RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11515
(117 letters)
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain
T1, pentamer, unkno function; 1.90A {Homo sapiens}
Length = 107
Score = 98.2 bits (245), Expect = 3e-28
Identities = 35/85 (41%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 13 RFSTSIQTLMWVPDSFFTALLSGR--ISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDL 70
F T+ QTL P SF L + S KDETGA IDRDP F +LNYLR + +
Sbjct: 16 YFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVI 75
Query: 71 -KSTDLRTLRHEAEYYGIAPLVKRL 94
K + EAE+Y I L+K +
Sbjct: 76 NKDLAEEGVLEEAEFYNITSLIKLV 100
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium
channel domain T1, pentameric assembly, HOST-virus
interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Length = 202
Score = 97.0 bits (241), Expect = 1e-26
Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 13 RFSTSIQTLMWVPDSFFTALLSGR--ISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDL 70
F T+ QTL P SF L + S KDETGA IDRDP F +LNYLR + +
Sbjct: 22 YFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVI 81
Query: 71 -KSTDLRTLRHEAEYYGIAPLVKRLVLCEDL 100
K + EAE+Y I L+K L +D
Sbjct: 82 NKDLAEEGVLEEAEFYNITSLIK---LVKDK 109
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated
potassium channel SHAL, membrane protein; 2.10A {Rattus
norvegicus} SCOP: d.42.1.2
Length = 105
Score = 83.6 bits (207), Expect = 2e-22
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 13 RFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDL-K 71
RF T TL PD+ + S R ET F DRDP +F ILN+ RT + +
Sbjct: 10 RFQTWQDTLERYPDTLLGS--SERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPR 67
Query: 72 STDLRTLRHEAEYYGIAPLVKRLVLCEDLNQ 102
+ E ++G+ P + E+
Sbjct: 68 HECISAYDEELAFFGLIPEIIGDCCYEEYKD 98
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1,
membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Length = 140
Score = 81.4 bits (201), Expect = 3e-21
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 13 RFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDL-K 71
RF T TL PD+ + + ++T F DRDP+VF +LN+ RT + +
Sbjct: 45 RFQTWRTTLERYPDTLLGST--EKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPR 102
Query: 72 STDLRTLRHEAEYYGIAPLVKRLVLCEDLNQ 102
+ E +YGI P + E+
Sbjct: 103 YECISAYDDELAFYGILPEIIGDCCYEEYKD 133
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels,
tetramerization domain, T1 domain, transport PR; 2.60A
{Homo sapiens} SCOP: d.42.1.2
Length = 124
Score = 80.6 bits (199), Expect = 3e-21
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 13 RFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKS 72
RF T TL PD+ + + ++T F DRDP+VF +LN+ RT +
Sbjct: 23 RFQTWRTTLERYPDTLLGST--EKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPR 80
Query: 73 T-DLRTLRHEAEYYGIAPLVKRLVLCEDLNQ 102
+ E +YGI P + E+
Sbjct: 81 YECISAYDDELAFYGILPEIIGDCCYEEYKD 111
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular
recogni zinc-binding; 2.00A {Aplysia californica} SCOP:
d.42.1.2
Length = 115
Score = 78.6 bits (194), Expect = 2e-20
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 13 RFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDL-K 71
R T TL +P + + L + + F DR P VFA I+NY R+ +
Sbjct: 15 RHETYKATLKKIPATRLSRLTE-GMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPT 73
Query: 72 STDLRTLRHEAEYYGIAPLVKRLVLCEDLNQ 102
E E++G+
Sbjct: 74 DVCGPLFEEELEFWGLDSNQVEPCCWMTYTA 104
>1t1d_A Protein (potassium channel KV1.1); potassium channels,
tetramerization domain, aplysia KV1.1, proton
transport, membrane protein; 1.51A {Aplysia
californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A
1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Length = 100
Score = 73.3 bits (180), Expect = 2e-18
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 13 RFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKS 72
RF T ++TL PD+ R F DR+ F IL + ++ +
Sbjct: 11 RFETQLKTLNQFPDTLLGNPQK-RNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRP 69
Query: 73 TD--LRTLRHEAEYYGIAPLV 91
+ L E ++Y +
Sbjct: 70 VNVPLDVFSEEIKFYELGENA 90
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 39.7 bits (92), Expect = 7e-05
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 13 RFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRT 65
RF T ++TL P++ R+ F DR+ F IL Y ++
Sbjct: 62 RFETQLKTLAQFPETLLGDPKK-RMRYFDPLRNEYFFDRNRPSFDAILYYYQS 113
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 32.6 bits (74), Expect = 0.021
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 27 SFFTALLSGRISSLKDETGAIFI-DRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEAEYY 85
F+A+ + + + + I D +P+VF ++ ++ T L A+ Y
Sbjct: 198 PVFSAMFEHEME--ESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKY 255
Query: 86 GIAPLVKRL--VLCEDLNQSSCGDVL 109
+ L LC +L+ + ++L
Sbjct: 256 ALERLKVMCEDALCSNLSVENAAEIL 281
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.18
Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 49/121 (40%)
Query: 25 PDSFFTALLSGRISSL---------------KDETGAIFIDRDPK-------VFA----- 57
+ ++SG SL D++ F +R K V +
Sbjct: 374 AKNL---VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 58 -------IILNYLRTRDIDLKSTDLR-----T-----LRHEAEYYGIAPLVKRLVLCEDL 100
+I L ++ + D++ T LR + I+ + ++ +
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG--SISERIVDCIIRLPV 488
Query: 101 N 101
Sbjct: 489 K 489
Score = 29.2 bits (65), Expect = 0.34
Identities = 21/141 (14%), Positives = 39/141 (27%), Gaps = 47/141 (33%)
Query: 10 EIPRFSTSIQTLMWVPDSFFTALLSGR-----ISSLKDETGAIFIDRDPKVFAIILNYLR 64
++ +F + + F L G + L E K +I NY+
Sbjct: 76 KVGQFDQVLNLCL---TEFENCYLEGNDIHALAAKLLQENDT----TLVKTKELIKNYIT 128
Query: 65 TRDIDLKSTDLRT----LRH----EAEYYGI---------------------APLVKRLV 95
R + + D ++ R A+ I LV L+
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 96 ------LCEDLNQSSCGDVLF 110
L E + + + +F
Sbjct: 189 KFSAETLSELIRTTLDAEKVF 209
Score = 28.1 bits (62), Expect = 0.67
Identities = 21/150 (14%), Positives = 37/150 (24%), Gaps = 68/150 (45%)
Query: 12 PRFSTS---IQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPK-----VFAIILNYL 63
+FS + P F + LL + + + + K V+
Sbjct: 414 LKFSNRFLPVA----SP--FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD------ 461
Query: 64 RTRDIDLKSTDLRTLRHEA--------------------------------EYYGIAPLV 91
T D +DLR L G+ L
Sbjct: 462 -TFD----GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516
Query: 92 K--------RLVLCEDLNQSSCGDVLFYGY 113
R+++ L+ + D YG+
Sbjct: 517 HRNKDGTGVRVIVAGTLDINPDDD---YGF 543
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 0.78
Identities = 3/18 (16%), Positives = 9/18 (50%), Gaps = 2/18 (11%)
Query: 10 EIPRFSTSIQTLMWVPDS 27
+ + S++ ++ DS
Sbjct: 21 ALKKLQASLK--LYADDS 36
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 27.1 bits (61), Expect = 0.84
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 27 SFFTALLSGRISSLKDETGAIFI-DRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEAEYY 85
S F A+ G L + I I D +P F I+L Y+ + +IDL++ + + A+ Y
Sbjct: 36 SVFYAMFYG---DLAEVKSEIHIPDVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKY 92
Query: 86 GIAPLVKRLVLCED 99
+ L K C +
Sbjct: 93 IVPALAK---ACVN 103
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 25.5 bits (55), Expect = 4.5
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 4 EPY--LLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILN 61
EP+ + IE+P I S + + + F D K++ +
Sbjct: 169 EPFENIAIELP--PNEIL------FSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFF 220
Query: 62 YLRTRD 67
+ +
Sbjct: 221 FKQAEQ 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 25.8 bits (57), Expect = 4.6
Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 15/94 (15%)
Query: 15 STSIQTLMWVPDSFFTALLSGRIS-SLKDETGAIF-IDRDPKVFAIILN----YLRTRDI 68
S SI + WV D F + R++ + +T + ++ + + YL R++
Sbjct: 533 SESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREV 592
Query: 69 DLKSTDLRTLRHEAEYYGIAPLVKRLVLCEDLNQ 102
+ ++ E+ + L L ++ +
Sbjct: 593 HVYGYEI--SLEVLEF-------QTLTLRGEIEE 617
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 25.3 bits (56), Expect = 4.9
Identities = 8/67 (11%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 27 SFFTALLSGRISSLKDETGAIFIDR-DPKVFAIILNYLRTRDIDLKSTDLRTLRHEAEYY 85
S+F + + G+ + + K F ++ + T + L ++ + E+
Sbjct: 60 SYFHSRIVGQTDAELTV---TLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFL 116
Query: 86 GIAPLVK 92
+ + +
Sbjct: 117 SVHNIEE 123
>3qb8_A A654L protein; GNAT N-acetyltransferase, acetyltransferase, COA,
spermine, spermidine, transferase; HET: COA; 1.50A
{Paramecium bursaria chlorella virus 1}
Length = 197
Score = 24.9 bits (54), Expect = 7.2
Identities = 11/62 (17%), Positives = 22/62 (35%)
Query: 25 PDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEAEY 84
F T+ + + F+D D + A ILN ++ ++R +
Sbjct: 37 TCDFTTSFQNIMKQCVDYGHSFAFVDADDNIKAQILNIPYDAYENMHYGNIRETDPMFDL 96
Query: 85 YG 86
+G
Sbjct: 97 FG 98
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD,
DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Length = 440
Score = 24.8 bits (55), Expect = 7.5
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 37 ISSLKDETGAIFIDRDPKVFAI-----ILNYLRTRDIDLKSTD 74
+S ++ AI+++ D F+I I I+ K+ +
Sbjct: 83 VSRFFNKVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYE 125
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 24.4 bits (54), Expect = 9.1
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 46 AIFIDRDPKVFAII---LNYLRTRDIDLKSTD-LRTLRHEAEYYGI 87
A I+ D V + L L+ + + +++ + L + + I
Sbjct: 80 ATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNI 125
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 24.2 bits (53), Expect = 9.2
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 27 SFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEAEYYG 86
S+F L + + + P+ F IL++ T + + D L + A +
Sbjct: 57 SYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQ 112
Query: 87 IAPLVK 92
I +++
Sbjct: 113 IQEIME 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.143 0.430
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,830,065
Number of extensions: 99239
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 28
Length of query: 117
Length of database: 6,701,793
Length adjustment: 80
Effective length of query: 37
Effective length of database: 4,468,113
Effective search space: 165320181
Effective search space used: 165320181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.9 bits)