RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11515
         (117 letters)



>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 105

 Score = 78.0 bits (192), Expect = 9e-21
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 13  RFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDL-K 71
           RF T   TL   PD+   +    R      ET   F DRDP +F  ILN+ RT  +   +
Sbjct: 10  RFQTWQDTLERYPDTLLGSS--ERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPR 67

Query: 72  STDLRTLRHEAEYYGIAPLVKRLVLCEDLNQ 102
              +     E  ++G+ P +      E+   
Sbjct: 68  HECISAYDEELAFFGLIPEIIGDCCYEEYKD 98


>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea
          hare (Aplysia californica) [TaxId: 6500]}
          Length = 100

 Score = 75.2 bits (185), Expect = 1e-19
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 13 RFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKS 72
          RF T ++TL   PD+        R           F DR+   F  IL + ++     + 
Sbjct: 11 RFETQLKTLNQFPDTLLGNPQK-RNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRP 69

Query: 73 TD--LRTLRHEAEYYGIAPLV 91
           +  L     E ++Y +    
Sbjct: 70 VNVPLDVFSEEIKFYELGENA 90


>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel
          {California sea hare (Aplysia californica) [TaxId:
          6500]}
          Length = 103

 Score = 74.2 bits (182), Expect = 2e-19
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 13 RFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDL-K 71
          R  T   TL  +P +  + L  G ++         F DR P VFA I+NY R+  +    
Sbjct: 12 RHETYKATLKKIPATRLSRLTEGMLN-YDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPT 70

Query: 72 STDLRTLRHEAEYYGIAPLV 91
                   E E++G+    
Sbjct: 71 DVCGPLFEEELEFWGLDSNQ 90


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 27.7 bits (61), Expect = 0.20
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 50  DRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEAEYYGIAPLVKRLVLCEDLNQS 103
              PK F  IL Y  T  +  K+ DL  L + AE   I  L +    C  + ++
Sbjct: 69  FLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEE---QCLKMLET 119


>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia
          coli [TaxId: 562]}
          Length = 106

 Score = 24.3 bits (53), Expect = 3.2
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 10/51 (19%)

Query: 15 STSIQTLMWVPDSFFTALLSGRISS--------LKDETGAIFIDRDPKVFA 57
          +T         D++ T  L G I           KD +G I +D D K + 
Sbjct: 25 TTVESAKSLRDDTWVT--LRGNIVERISDDLYVFKDASGTINVDIDHKRWN 73


>d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]}
          Length = 179

 Score = 24.1 bits (51), Expect = 4.4
 Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 4/50 (8%)

Query: 20  TLMWVPDSFFTALLSGRISSLKDET----GAIFIDRDPKVFAIILNYLRT 65
           T ++            R+   ++      G I +    +V ++I   L  
Sbjct: 125 TSIYSSADMIVMNYLSRLDGARNVQIHGVGHIGLLYSSQVNSLIKEGLNG 174


>g1n13.1 d.155.1.2 (A:,B:) Arginine decarboxylase {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 159

 Score = 23.6 bits (51), Expect = 6.0
 Identities = 6/26 (23%), Positives = 9/26 (34%)

Query: 63  LRTRDIDLKSTDLRTLRHEAEYYGIA 88
              R  +L   +   + H  E  G A
Sbjct: 125 FEMRGWELDRIESIAVEHTVEKLGCA 150


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.143    0.430 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 443,893
Number of extensions: 18557
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 9
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.0 bits)