BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11518
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 12/127 (9%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTITC 59
L QT HS + + + + AS+ D+TV L++ ++G L+Q H ++
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVRG 226
Query: 60 LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
+ F+P+G + S SDD ++ ++ L+ L + ++VN ++ P G+ S D
Sbjct: 227 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDD 283
Query: 120 KTLRTWN 126
KT++ WN
Sbjct: 284 KTVKLWN 290
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 16/129 (12%)
Query: 4 LTQTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTI 57
L QT HS +SVR VA + AS+ D+TV L++ ++G L+Q H ++
Sbjct: 459 LLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSV 511
Query: 58 TCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG 117
+ F+P+G + S SDD ++ ++ L+ L + ++V ++ P G+ S
Sbjct: 512 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVWGVAFSPDGQTIASAS 568
Query: 118 KDKTLRTWN 126
DKT++ WN
Sbjct: 569 SDKTVKLWN 577
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 16/129 (12%)
Query: 4 LTQTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTI 57
L QT HS +SVR VA + AS+ D+TV L++ ++G L+Q H ++
Sbjct: 90 LLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSV 142
Query: 58 TCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG 117
+ F+P+G + S SDD ++ ++ L+ L + ++V ++ P G+ S
Sbjct: 143 WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVWGVAFSPDGQTIASAS 199
Query: 118 KDKTLRTWN 126
DKT++ WN
Sbjct: 200 DDKTVKLWN 208
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 12/127 (9%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTITC 59
L QT HS + + + + AS+ D+TV L++ ++G L+Q H ++
Sbjct: 418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVRG 472
Query: 60 LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
+ F+P+G + S SDD ++ ++ L+ L + ++V ++ P G+ S D
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVRGVAFSPDGQTIASASDD 529
Query: 120 KTLRTWN 126
KT++ WN
Sbjct: 530 KTVKLWN 536
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 12/127 (9%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTITC 59
L QT HS + + + + AS+ D+TV L++ ++G L+Q H ++
Sbjct: 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVWG 308
Query: 60 LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
+ F+P+G + S SDD ++ ++ L+ L + ++V ++ P G+ S D
Sbjct: 309 VAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHS---SSVWGVAFSPDGQTIASASDD 365
Query: 120 KTLRTWN 126
KT++ WN
Sbjct: 366 KTVKLWN 372
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 16/129 (12%)
Query: 4 LTQTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTI 57
L QT HS +SVR VA + AS+ D+TV L++ ++G L+Q H ++
Sbjct: 377 LLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSV 429
Query: 58 TCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG 117
+ F+P+ + S SDD ++ ++ L+ L + ++V ++ P G+ S
Sbjct: 430 WGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVRGVAFSPDGQTIASAS 486
Query: 118 KDKTLRTWN 126
DKT++ WN
Sbjct: 487 DDKTVKLWN 495
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 12/127 (9%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTITC 59
L QT HS + + + + AS+ D+TV L++ ++G L+Q H ++
Sbjct: 49 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVRG 103
Query: 60 LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
+ F+P+G + S SDD ++ ++ L+ L + ++V ++ P G+ S D
Sbjct: 104 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVWGVAFSPDGQTIASASDD 160
Query: 120 KTLRTWN 126
KT++ WN
Sbjct: 161 KTVKLWN 167
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTITCLK 61
QT HS + + + + AS+ D+TV L++ ++G L+Q H ++ +
Sbjct: 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVRGVA 392
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
F+P+G + S SDD ++ ++ L+ L + ++V ++ P + S DKT
Sbjct: 393 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVWGVAFSPDDQTIASASDDKT 449
Query: 122 LRTWN 126
++ WN
Sbjct: 450 VKLWN 454
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 45 KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHI 104
K+ L H ++ + F+P+G + S SDD ++ ++ L+ L + ++V +
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVWGV 63
Query: 105 SIHPSGKLALSVGKDKTLRTWN 126
+ P G+ S DKT++ WN
Sbjct: 64 AFSPDGQTIASASDDKTVKLWN 85
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 126 NLVKGR 131
+ KG+
Sbjct: 220 DYSKGK 225
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 130
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 131 VRIWDVKTGK 140
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 118 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 177
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 178 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Query: 126 NLVKGR 131
+ KG+
Sbjct: 237 DYSKGK 242
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 30 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 89
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 90 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 147
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 148 VRIWDVKTGK 157
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 126 NLVKGR 131
+ KG+
Sbjct: 220 DYSKGK 225
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 130
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 131 VRIWDVKTGK 140
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 100 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 159
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 160 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Query: 126 NLVKGR 131
+ KG+
Sbjct: 219 DYSKGK 224
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 12 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 71
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 129
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 130 VRIWDVKTGK 139
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 126 NLVKGR 131
+ KG+
Sbjct: 226 DYSKGK 231
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 136
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 137 VRIWDVKTGK 146
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 97 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 156
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 157 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Query: 126 NLVKGR 131
+ KG+
Sbjct: 216 DYSKGK 221
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 68
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 69 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 126
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 127 VRIWDVKTGK 136
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 106 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 165
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 166 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Query: 126 NLVKGR 131
+ KG+
Sbjct: 225 DYSKGK 230
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 18 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 77
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 78 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 135
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 136 VRIWDVKTGK 145
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 126 NLVKGR 131
+ KG+
Sbjct: 223 DYSKGK 228
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS-NYVFCCNFNPQSNLIVSGSFDES 133
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 134 VRIWDVKTGK 143
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 126 NLVKGR 131
+ KG+
Sbjct: 223 DYSKGK 228
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS-NYVFCCNFNPQSNLIVSGSFDES 133
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 134 VRIWDVKTGK 143
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 102 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 161
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 162 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Query: 126 NLVKGR 131
+ KG+
Sbjct: 221 DYSKGK 226
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 14 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 73
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 74 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 131
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 132 VRIWDVKTGK 141
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 126 NLVKGR 131
+ KG+
Sbjct: 226 DYSKGK 231
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 136
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 137 VRIWDVKTGK 146
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 126 NLVKGR 131
+ KG+
Sbjct: 226 DYSKGK 231
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 136
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 137 VRIWDVKTGK 146
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 126 NLVKGR 131
+ KG+
Sbjct: 223 DYSKGK 228
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 13 HTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
H + VA + S L S+ D+T+ ++D+ K L H + C F P+ + ++
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
S S D S+ I+ V + + K AH V+ + + G L +S D R W+ G
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTL-PAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 131 R 131
+
Sbjct: 185 Q 185
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + A+S AD+ + ++ K + H+ I+ +
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHS-NYVFCCNFNPQSNLIVSGSFDES 133
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 134 VRIWDVKTGK 143
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 123 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 182
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 126 NLVKGR 131
+ KG+
Sbjct: 242 DYSKGK 247
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 152
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 153 VRIWDVKTGK 162
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 125 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 184
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 185 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Query: 126 NLVKGR 131
+ KG+
Sbjct: 244 DYSKGK 249
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 96
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 97 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 154
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 155 VRIWDVKTGK 164
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 3 TLTQTFVTHSHTASVRSVAATS--KLAASSGADETVVLYDMVKR-KQSGALMQHEGTITC 59
T T+ FV HT V SVA +S + S D+T+ L++ + K + H ++C
Sbjct: 96 TTTRRFV--GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 153
Query: 60 LKFTPEGSH--LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG 117
++F+P S+ ++SC D + ++ + + +L K H G +N +++ P G L S G
Sbjct: 154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-KTNHIGHTG-YLNTVTVSPDGSLCASGG 211
Query: 118 KDKTLRTWNLVKGRSAY 134
KD W+L +G+ Y
Sbjct: 212 KDGQAMLWDLNEGKHLY 228
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 14/92 (15%)
Query: 48 GALMQHEGTITCLKFTPEGSHLI-SCSDDGSIAIFRVGSWQLEK------LFKKAHKGTA 100
G L H G +T + TP+ +I S S D +I + W+L + + ++A +G +
Sbjct: 9 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIM-----WKLTRDETNYGIPQRALRGHS 63
Query: 101 --VNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
V+ + I G+ ALS D TLR W+L G
Sbjct: 64 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 95
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 3 TLTQTFVTHSHTASVRSVAATS--KLAASSGADETVVLYDMVKR-KQSGALMQHEGTITC 59
T T+ FV HT V SVA +S + S D+T+ L++ + K + H ++C
Sbjct: 119 TTTRRFV--GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 176
Query: 60 LKFTPEGSH--LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG 117
++F+P S+ ++SC D + ++ + + +L K H G +N +++ P G L S G
Sbjct: 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-KTNHIGHTG-YLNTVTVSPDGSLCASGG 234
Query: 118 KDKTLRTWNLVKGRSAY 134
KD W+L +G+ Y
Sbjct: 235 KDGQAMLWDLNEGKHLY 251
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 19/116 (16%)
Query: 29 SSGAD---ETVVLYDMVKRKQS--GALMQHEGTITCLKFTPEGSHLI-SCSDDGSIAIFR 82
SSG D E + M+ + + G L H G +T + TP+ +I S S D +I +
Sbjct: 8 SSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIM-- 65
Query: 83 VGSWQLEK------LFKKAHKGTA--VNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
W+L + + ++A +G + V+ + I G+ ALS D TLR W+L G
Sbjct: 66 ---WKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 118
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 15/138 (10%)
Query: 3 TLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVK--RKQSGALMQHEGTITCL 60
T + FV H + + ++ S+GA+ + L++++ + S H ++C+
Sbjct: 109 TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV 168
Query: 61 KFTP----------EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
+++P + S DG + ++ ++Q+ FK AH+ + VNH+SI P+G
Sbjct: 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-AHE-SNVNHLSISPNG 225
Query: 111 KLALSVGKDKTLRTWNLV 128
K + GKDK L W+++
Sbjct: 226 KYIATGGKDKKLLIWDIL 243
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 32 ADETVVLYDMVKRKQSGALMQHEGTITCL------KFTPEGSHLISCSDDGSIAIFRVGS 85
AD + + +VKR G L H +T + K + LIS S D ++ I+++
Sbjct: 2 ADNSSLDIQVVKR---GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYE 58
Query: 86 WQLEKLFKKAHKG-TAVNH----ISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ F HK T NH +++ A+S DKTLR W+L G
Sbjct: 59 EEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG 108
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
+ + TF H + S++ K A+ G D+ ++++D++ TI +
Sbjct: 203 FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIA 262
Query: 62 FTPEGSHLISCSDDGSIAIFRV 83
F P+ + +D G + IF +
Sbjct: 263 FNPKLQWVAVGTDQG-VKIFNL 283
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ L H ++ + F +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD 163
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 126 NLVKGR 131
+ KG+
Sbjct: 223 DYSKGK 228
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 133
Query: 122 LRTWNLVKG 130
+R W++ G
Sbjct: 134 VRIWDVKTG 142
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 50 LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPS 109
L H ++ +KF+P G L S S D I I+ + EK HK ++ ++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHK-LGISDVAWSSD 79
Query: 110 GKLALSVGKDKTLRTWNLVKGR 131
L +S DKTL+ W++ G+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGK 101
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 9 VTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQ--SGALMQHEGTITCLKFTP 64
V +SHT V+ V + +L AS+ D+TV LY + L HE T+ L F P
Sbjct: 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP 204
Query: 65 EGSHLISCSDDGSIAIFR 82
G L SCSDD ++ I+R
Sbjct: 205 SGQRLASCSDDRTVRIWR 222
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
H+ T+ + ++P G++L S S D + I++ E + V ++ PSG L
Sbjct: 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL 119
Query: 113 ALSVGKDKTLRTWNL 127
+ +DK++ W +
Sbjct: 120 LATCSRDKSVWVWEV 134
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 13 HTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQS---GALMQHEGTITCLKFTPEGS 67
H V+SVA + L A+ D++V ++++ + + L H + + + P
Sbjct: 104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163
Query: 68 HLISCSDDGSIAIFRV--GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
L S S D ++ ++R W + H+ T V ++ PSG+ S D+T+R W
Sbjct: 164 LLASASYDDTVKLYREEEDDWVCCATLE-GHEST-VWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 53 HEGTITCLKFTP-EGSHLISCSDDGSIAIFR 82
H + C+ + P E L SCSDDG +A ++
Sbjct: 302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HT SV+ ++ + KL AS AD T+ L+D + + H+ ++ + P G H++
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
S S D +I ++ V + K F H+ V + + G L S D+T+R W
Sbjct: 209 SASRDKTIKMWEVQTGYCVKTF-TGHR-EWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 22/152 (14%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+TF H + L AS D+TV ++ + ++ L +H + C+ + PE
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 287
Query: 66 --------------------GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHIS 105
G L+S S D +I ++ V + L V +
Sbjct: 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGVL 345
Query: 106 IHPSGKLALSVGKDKTLRTWNLVKGRSAYITN 137
H GK LS DKTLR W+ R N
Sbjct: 346 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 377
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 26 LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS 85
+ S+ D T+ ++D L H ++ + F G L SCS D +I ++
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 86 WQ-LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
++ + + H V+ +SI P+G +S +DKT++ W + G
Sbjct: 182 FECIRTMHGHDHN---VSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 49 ALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP 108
AL H +T + F P S ++S S+D +I ++ + E+ K H +V IS
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTD-SVQDISFDH 160
Query: 109 SGKLALSVGKDKTLRTWNL 127
SGKL S D T++ W+
Sbjct: 161 SGKLLASCSADMTIKLWDF 179
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 26/151 (17%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTI 57
+ +T H H S S+ S+ D+T+ ++++ Q+G ++ H +
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV----QTGYCVKTFTGHREWV 237
Query: 58 TCLKFTPEGSHLISCSDDGSIAIFRVG------------------SWQLEKLFKKAHKGT 99
++ +G+ + SCS+D ++ ++ V SW E + + T
Sbjct: 238 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 297
Query: 100 AVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
G LS +DKT++ W++ G
Sbjct: 298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 13 HTASVRSVAATS--KLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
H VR V S K S D+T+ ++D ++ L HE +T L F +++
Sbjct: 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 396
Query: 71 SCSDDGSIAIF 81
+ S D ++ ++
Sbjct: 397 TGSVDQTVKVW 407
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 4 LTQTFVTHSHTASVRSV----AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITC 59
L Q+F H H A V + + T S G D+ +++DM + A HE +
Sbjct: 188 LLQSF--HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNS 245
Query: 60 LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
+++ P G S SDD + ++ + + + ++ K + + SG+L + D
Sbjct: 246 VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND 305
Query: 120 KTLRTWNLVKG 130
T+ W+++KG
Sbjct: 306 YTINVWDVLKG 316
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTITCLK 61
++ H++ S S + ++ D T L+D+ +SG L+Q H + CL
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDV----ESGQLLQSFHGHGADVLCLD 203
Query: 62 FTPE--GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
P G+ +S D ++ + S Q + F + H+ + VN + +PSG S D
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF-ETHE-SDVNSVRYYPSGDAFASGSDD 261
Query: 120 KTLRTWNLVKGRSAYI 135
T R ++L R I
Sbjct: 262 ATCRLYDLRADREVAI 277
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 40 DMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGT 99
+M +K+S A+ H ++ FT +++ S DG+ A++ V S QL + F G
Sbjct: 142 NMAAKKKSVAM--HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG--HGA 197
Query: 100 AVNHISIHPS--GKLALSVGKDKTLRTWNLVKGR 131
V + + PS G +S G DK W++ G+
Sbjct: 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ 231
Score = 32.3 bits (72), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Query: 6 QTFVTH-SHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTI---TCLK 61
Q F TH S SVR + A+ S D T LYD+ ++ A+ E I + +
Sbjct: 234 QAFETHESDVNSVRYYPSGDAFASGSD-DATCRLYDLRADREV-AIYSKESIIFGASSVD 291
Query: 62 FTPEGSHLISCSDDGSIAIFRV--GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
F+ G L + +D +I ++ V GS ++ LF ++ V+ + + P G S D
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGS-RVSILFGHENR---VSTLRVSPDGTAFCSGSWD 347
Query: 120 KTLRTW 125
TLR W
Sbjct: 348 HTLRVW 353
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 15 ASVRSVAATSKLAASSGADET--VVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISC 72
A V + L + DE + + ++V + + QH+ T+ ++FT + LIS
Sbjct: 968 AQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISS 1027
Query: 73 SDDGSIAIFRVGSWQLEK-LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
SDD I +V +WQL+K +F + H+ T V + + +L LS D T++ WN++ G
Sbjct: 1028 SDDAEI---QVWNWQLDKCIFLRGHQET-VKDFRLLKNSRL-LSWSFDGTVKVWNIITG 1081
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 10/140 (7%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+ FV H T ++ + +S+ AD+T ++ L H G + C F+ +
Sbjct: 1085 KDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVD 1144
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNH------ISIHPSGKLALSVGKD 119
+ L + D+G I I+ V + +L L + A H + P GK+ +S G
Sbjct: 1145 STLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG-- 1202
Query: 120 KTLRTWNLVKGRSA--YITN 137
++ WN+V G S+ + TN
Sbjct: 1203 GYIKWWNVVTGESSQTFYTN 1222
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 4 LTQTFVTHSHTASVRSVAATSK--LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
L T+ HS + +S L A+ +D + L+D+ +++ + H ++ +
Sbjct: 697 LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCR 756
Query: 62 FTPEGSHLISCSDDGSIAIFRVGS 85
F+P+ L SCS DG++ ++ S
Sbjct: 757 FSPDDKLLASCSADGTLKLWDATS 780
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
H + + + A+ D+ V +++ + + +H + C FT HL+
Sbjct: 662 HEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLL 721
Query: 71 SCSDDGSIAIFRVGSWQL-EKLFKKAHKG--TAVNHISIHPSGKLALSVGKDKTLRTWN 126
+ GS F + W L +K + G +VNH P KL S D TL+ W+
Sbjct: 722 LAT--GSSDCF-LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 8 FVTHSHTASVR--SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
V HT +V + + AS GAD+T+ ++ ++ + HE + C F+ +
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTD 674
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG-KDKTLRT 124
+ +CS D + I+ + +L + + + H + + S L L+ G D L+
Sbjct: 675 DRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFT-NSSHHLLLATGSSDCFLKL 733
Query: 125 WNL 127
W+L
Sbjct: 734 WDL 736
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQ-----HEGTITCLKFTPEGSHLISCS 73
V +KL A D ++ + + +K L + H + F+ +G + SC
Sbjct: 581 EVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCG 640
Query: 74 DDGSIAIFRVGSWQLEKLFK-KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
D ++ +F+ + EKL + KAH+ + + + + DK ++ WN + G
Sbjct: 641 ADKTLQVFKAETG--EKLLEIKAHEDEVLC-CAFSTDDRFIATCSVDKKVKIWNSMTGE 696
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
H T + + LA + + V L++ R + H + + F+P+GS +
Sbjct: 845 HHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFL 904
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN-----HISIHPSGKLALSVGKDKTLRTW 125
+ SDD +I ++ KK K +AV + + + L+V +R
Sbjct: 905 TSSDDQTIRLWET---------KKVCKNSAVMLKQEVDVVFQENEVMVLAVDH---IRRL 952
Query: 126 NLVKGRSAYITNLS 139
L+ GR+ I L+
Sbjct: 953 QLINGRTGQIDYLT 966
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ L H ++ + F +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD 163
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D L+ W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Query: 126 NLVKGR 131
+ KG+
Sbjct: 223 DYSKGK 228
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 133
Query: 122 LRTWNLVKG 130
+R W++ G
Sbjct: 134 VRIWDVKTG 142
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 50 LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPS 109
L H ++ +KF+P G L S S D I I+ + EK HK ++ ++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHK-LGISDVAWSSD 79
Query: 110 GKLALSVGKDKTLRTWNLVKGR 131
L +S DKTL+ W++ G+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGK 101
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 13 HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGAL-------MQHEGTITCLKFT 63
HT V SV L AS+G D T+VLY+ V ++G + H G++ L ++
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLEK 90
P+G+ + S S D +I I+ V + ++EK
Sbjct: 249 PDGTKIASASADKTIKIWNVATLKVEK 275
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 33 DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIF------RVGSW 86
D TV +++ K +H + +++ P+GS S DG+I ++ + G +
Sbjct: 169 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 228
Query: 87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ + L AH G+ V ++ P G S DKT++ WN+
Sbjct: 229 EDDSLKNVAHSGS-VFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 36 VVLYDMVKRKQSGALMQHEGTITCLKFTPEGS-HLISCSDDGSIAIFRVGSWQLEKLFKK 94
V L+D +G L + + F P +IS SDD ++AIF ++ + F +
Sbjct: 131 VFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 188
Query: 95 AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
K V+ + +P G L S G D T+ +N V G
Sbjct: 189 HTK--FVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 5 TQTFVTHSHTASVRSVAAT--SKLAASSGADETVVLYDMV---KRKQSGALMQHEGTITC 59
T+ FV HT V SVA + ++ S+ D T+ L++ + K S H ++C
Sbjct: 465 TRRFV--GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522
Query: 60 LKFTPE--GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG 117
++F+P ++S S D ++ ++ + + +L H G V+ +++ P G L S G
Sbjct: 523 VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGY-VSTVAVSPDGSLCASGG 580
Query: 118 KDKTLRTWNLVKGRSAY 134
KD + W+L +G+ Y
Sbjct: 581 KDGVVLLWDLAEGKKLY 597
Score = 32.3 bits (72), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
L T H+ S +V+ L AS G D V+L+D+ + K+ +L + I L F+
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL-EANSVIHALCFS 611
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLE 89
P L + ++ G + W LE
Sbjct: 612 PNRYWLCAATEHG------IKIWDLE 631
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 13 HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HT V S+ A ++L S D + L+D+ + HE I + F P G+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ SDD + +F + + Q + + + +S SG+L L+ D W+ +K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 131 RSA 133
A
Sbjct: 303 DRA 305
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV 83
+++ SSG D T L+D+ +Q+ H G + L P+ +S + D S ++ V
Sbjct: 155 NQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ F H+ + +N I P+G + D T R ++L
Sbjct: 214 REGMCRQTF-TGHE-SDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 13 HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HT V S+ A ++L S D + L+D+ + HE I + F P G+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ SDD + +F + + Q + + + +S SG+L L+ D W+ +K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 131 RSA 133
A
Sbjct: 303 DRA 305
Score = 33.1 bits (74), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV 83
+++ SSG D T L+D+ +Q+ H G + L P+ +S + D S ++ V
Sbjct: 155 NQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ F H+ + +N I P+G + D T R ++L
Sbjct: 214 REGMCRQTF-TGHE-SDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 13 HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HT V S+ A ++L S D + L+D+ + HE I + F P G+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ SDD + +F + + Q + + + +S SG+L L+ D W+ +K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 131 RSA 133
A
Sbjct: 303 DRA 305
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV 83
+++ SSG D T L+D+ +Q+ H G + L P+ +S + D S ++ V
Sbjct: 155 NQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ F H+ + +N I P+G + D T R ++L
Sbjct: 214 REGMCRQTF-TGHE-SDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 13 HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HT V S+ A ++L S D + L+D+ + HE I + F P G+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ SDD + +F + + Q + + + +S SG+L L+ D W+ +K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 131 RSA 133
A
Sbjct: 303 DRA 305
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV 83
+++ SSG D T L+D+ +Q+ H G + L P+ +S + D S ++ V
Sbjct: 155 NQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ F H+ + +N I P+G + D T R ++L
Sbjct: 214 REGMCRQTF-TGHE-SDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 13 HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HT V S+ A ++L S D + L+D+ + HE I + F P G+
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ SDD + +F + + Q + + + +S SG+L L+ D W+ +K
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 313
Query: 131 RSA 133
A
Sbjct: 314 DRA 316
Score = 33.1 bits (74), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV 83
+++ SSG D T L+D+ +Q+ H G + L P+ +S + D S ++ V
Sbjct: 166 NQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Query: 84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ F H+ + +N I P+G + D T R ++L
Sbjct: 225 REGMCRQTF-TGHE-SDINAICFFPNGNAFATGSDDATCRLFDL 266
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 2 YTLTQTFVTHSHTASVRSVAA---TSKLAASSGADETVVLY------DMVKRKQSGALMQ 52
+TL +H ++RSVA TS LAA S D TV ++ D A+++
Sbjct: 46 FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS-FDSTVSIWAKEESADRTFEMDLLAIIE 104
Query: 53 -HEGTITCLKFTPEGSHLISCSDDGSIAIFRV---GSWQLEKLFKKAHKGTAVNHISIHP 108
HE + + ++ +G +L +CS D S+ I+ G + E + V H+ HP
Sbjct: 105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE-EYECISVLQEHSQDVKHVIWHP 163
Query: 109 SGKLALSVGKDKTLRTW 125
S L S D T+R W
Sbjct: 164 SEALLASSSYDDTVRIW 180
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP- 64
Q FV H + + + S D+T+ ++ +K + L+ H ++ ++ P
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPN 159
Query: 65 -----EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
+ +IS +D + + + +Q+E F + +N ++ P G L S GKD
Sbjct: 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKD 217
Query: 120 KTLRTWNLVKGRSAY 134
+ WNL ++ Y
Sbjct: 218 GEIMLWNLAAKKAMY 232
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
++F HSH ++ A A S+ D+T+ L+D+ + + H+ + + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL------ALSVGKD 119
S +IS S D +I ++ + L L H V+ + + P+ K +S G D
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLL--GHNDW-VSQVRVVPNEKADDDSVTIISAGND 175
Query: 120 KTLRTWNL 127
K ++ WNL
Sbjct: 176 KMVKAWNL 183
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 48 GALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRV-GSWQLEKLFKKAHKGTA--VNH 103
G L H G +T L + + + L+S S D ++ +++ G Q + ++ KG + V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 104 ISIHPSGKLALSVGKDKTLRTWNLVKGRS 132
++ G ALS DKTLR W++ G +
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGET 99
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP- 64
Q FV H + + + S D+T+ ++ +K + L+ H ++ ++ P
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPN 159
Query: 65 -----EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
+ +IS +D + + + +Q+E F + +N ++ P G L S GKD
Sbjct: 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKD 217
Query: 120 KTLRTWNLVKGRSAY 134
+ WNL ++ Y
Sbjct: 218 GEIMLWNLAAKKAMY 232
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
++F HSH ++ A A S+ D+T+ L+D+ + + H+ + + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL------ALSVGKD 119
S +IS S D +I ++ + L L H V+ + + P+ K +S G D
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLL--GHNDW-VSQVRVVPNEKADDDSVTIISAGND 175
Query: 120 KTLRTWNL 127
K ++ WNL
Sbjct: 176 KMVKAWNL 183
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 48 GALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRV-GSWQLEKLFKKAHKGTA--VNH 103
G L H G +T L + + + L+S S D ++ +++ G Q + ++ KG + V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 104 ISIHPSGKLALSVGKDKTLRTWNLVKGRS 132
++ G ALS DKTLR W++ G +
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGET 99
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP- 64
Q FV H + + + S D+T+ ++ +K + L+ H ++ ++ P
Sbjct: 95 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPN 153
Query: 65 -----EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
+ +IS +D + + + +Q+E F + +N ++ P G L S GKD
Sbjct: 154 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKD 211
Query: 120 KTLRTWNLVKGRSAY 134
+ WNL ++ Y
Sbjct: 212 GEIMLWNLAAKKAMY 226
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
++F HSH ++ A A S+ D+T+ L+D+ + + H+ + + +
Sbjct: 53 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 112
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL------ALSVGKD 119
S +IS S D +I ++ + L L H V+ + + P+ K +S G D
Sbjct: 113 ASMIISGSRDKTIKVWTIKGQCLATLL--GHNDW-VSQVRVVPNEKADDDSVTIISAGND 169
Query: 120 KTLRTWNL 127
K ++ WNL
Sbjct: 170 KMVKAWNL 177
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 48 GALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRV-GSWQLEKLFKKAHKGTA--VNH 103
G L H G +T L + + + L+S S D ++ +++ G Q + ++ KG + V
Sbjct: 5 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 64
Query: 104 ISIHPSGKLALSVGKDKTLRTWNLVKGRS 132
++ G ALS DKTLR W++ G +
Sbjct: 65 CTLTADGAYALSASWDKTLRLWDVATGET 93
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP- 64
Q FV H + + + S D+T+ ++ +K + L+ H ++ ++ P
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPN 159
Query: 65 -----EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
+ +IS +D + + + +Q+E F + +N ++ P G L S GKD
Sbjct: 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKD 217
Query: 120 KTLRTWNLVKGRSAY 134
+ WNL ++ Y
Sbjct: 218 GEIMLWNLAAKKAMY 232
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
++F HSH ++ A A S+ D+T+ L+D+ + + H+ + + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL------ALSVGKD 119
S +IS S D +I ++ + L L H V+ + + P+ K +S G D
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLL--GHN-DWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 120 KTLRTWNL 127
K ++ WNL
Sbjct: 176 KMVKAWNL 183
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 48 GALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRV-GSWQLEKLFKKAHKGTA--VNH 103
G L H G +T L + + + L+S S D ++ +++ G Q + ++ KG + V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 104 ISIHPSGKLALSVGKDKTLRTWNLVKGRS 132
++ G ALS DKTLR W++ G +
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGET 99
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP- 64
Q FV H + + + S D+T+ ++ +K + L+ H ++ ++ P
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPN 159
Query: 65 -----EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
+ +IS +D + + + +Q+E F + +N ++ P G L S GKD
Sbjct: 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKD 217
Query: 120 KTLRTWNLVKGRSAY 134
+ WNL ++ Y
Sbjct: 218 GEIMLWNLAAKKAMY 232
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
++F HSH ++ A A S+ D+T+ L+D+ + + H+ + + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL------ALSVGKD 119
S +IS S D +I ++ + L L H V+ + + P+ K +S G D
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLL--GHNDW-VSQVRVVPNEKADDDSVTIISAGND 175
Query: 120 KTLRTWNL 127
K ++ WNL
Sbjct: 176 KMVKAWNL 183
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 48 GALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRV-GSWQLEKLFKKAHKGTA--VNH 103
G L H G +T L + + + L+S S D ++ +++ G Q + ++ KG + V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 104 ISIHPSGKLALSVGKDKTLRTWNLVKGRS 132
++ G ALS DKTLR W++ G +
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGET 99
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 9/135 (6%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP- 64
Q FV H + + S D+T+ ++ +K + L+ H ++ ++ P
Sbjct: 101 QRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPN 159
Query: 65 -----EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
+ +IS +D + + + +Q+E F + +N ++ P G L S GKD
Sbjct: 160 EKADDDSVTIISAGNDKXVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKD 217
Query: 120 KTLRTWNLVKGRSAY 134
+ WNL ++ Y
Sbjct: 218 GEIXLWNLAAKKAXY 232
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
++F HSH ++ A A S+ D+T+ L+D+ + + H+ + + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKK 118
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLA------LSVGKD 119
S +IS S D +I ++ + L L H V+ + + P+ K +S G D
Sbjct: 119 ASXIISGSRDKTIKVWTIKGQCLATLL--GHNDW-VSQVRVVPNEKADDDSVTIISAGND 175
Query: 120 KTLRTWNL 127
K ++ WNL
Sbjct: 176 KXVKAWNL 183
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 48 GALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRV-GSWQLEKLFKKAHKGTA--VNH 103
G L H G +T L + + + L+S S D ++ +++ G Q + ++ KG + V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 104 ISIHPSGKLALSVGKDKTLRTWNLVKGRS 132
++ G ALS DKTLR W++ G +
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGET 99
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 40.8 bits (94), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 1 KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
K TL + HT SV + ++ + +D TV ++D+ + L+ H + L
Sbjct: 160 KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 219
Query: 61 KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG--TAVNHISIHPSGKLALSVGK 118
+F +++CS D SIA++ + S + ++ G AVN + K +S
Sbjct: 220 RFN--NGMMVTCSKDRSIAVWDMAS-PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274
Query: 119 DKTLRTWN 126
D+T++ WN
Sbjct: 275 DRTIKVWN 282
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 25/137 (18%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTITCLKFTPEG 66
+ H + + +L S +D T+ L+D+ + GA ++ HE + C++F +
Sbjct: 293 NGHKRGIACLQYRDRLVVSGSSDNTIRLWDI----ECGACLRVLEGHEELVRCIRF--DN 346
Query: 67 SHLISCSDDGSIAIFRVGSWQL-EKLFKKAHKGTAVNHISIHPSGKL---------ALSV 116
++S + DG I + W L L +A GT + SG++ +S
Sbjct: 347 KRIVSGAYDGKIKV-----WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSS 401
Query: 117 GKDKTLRTWNLVKGRSA 133
D T+ W+ + +A
Sbjct: 402 SHDDTILIWDFLNDPAA 418
Score = 31.2 bits (69), Expect = 0.21, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 33 DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF 92
D T+ ++D + L H G++ CL++ + +I+ S D ++ ++ V + ++ L
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM--LN 207
Query: 93 KKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
H AV H+ + + ++ KD+++ W++
Sbjct: 208 TLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDM 240
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 13 HTASVRSVAATS---KLAASSGADETVVLYDM-VKRKQSGALMQHEGTITCLKFTPEGSH 68
HTA V S++ S + S D TV L+D+ + + HEG I +KF P+G
Sbjct: 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR 263
Query: 69 LISCSDDGSIAIF--RVGSWQLEKLFKKAHKG----TAVNHISIHPSGKLALSVGKDKTL 122
+ SDDG+ +F R G QL+ ++ + V ++ SG+L + +
Sbjct: 264 FGTGSDDGTCRLFDMRTGH-QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC 322
Query: 123 RTWN 126
W+
Sbjct: 323 YVWD 326
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 50 LMQHEGTITCLKFTPEGSHLISCSDDGSIAIF 81
L H G + L +TPE + ++S S DG + ++
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVW 93
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIF 81
HEG I+CL + +GS L + S D ++ I+
Sbjct: 343 HEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 9 VTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH 68
V H ASVR+V+ + S D T++++D+ + K L H I + E
Sbjct: 265 VLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKR 324
Query: 69 LISCSDDGSIAIFRVGSWQLE--KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
IS S D +I I W LE +L TA+ + + S K +S D ++R W+
Sbjct: 325 CISASXDTTIRI-----WDLENGELXYTLQGHTALVGL-LRLSDKFLVSAAADGSIRGWD 378
Score = 33.1 bits (74), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 13 HTASVRSVAATSKLAASSGADETVV-LYDMVKRKQSGALMQHEGTITCLKFTPEGSHLIS 71
H SV + +GAD+ + +YD + +K L H+G + LK+ G L+S
Sbjct: 120 HXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILVS 178
Query: 72 CSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
S D ++ ++ + +F+ + I + + K ++ +D TL W L K
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238
Query: 132 SA 133
S
Sbjct: 239 SV 240
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 9 VTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH 68
V H ASVR+V+ + S D T++++D+ + K L H I + E
Sbjct: 265 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR 324
Query: 69 LISCSDDGSIAIFRVGSWQLE--KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
IS S D +I I W LE +L TA+ + + S K +S D ++R W+
Sbjct: 325 CISASMDTTIRI-----WDLENGELMYTLQGHTALVGL-LRLSDKFLVSAAADGSIRGWD 378
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 13 HTASVRSVAATSKLAASSGADETVV-LYDMVKRKQSGALMQHEGTITCLKFTPEGSHLIS 71
H SV + +GAD+ ++ +YD + +K L H+G + LK+ G L+S
Sbjct: 120 HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILVS 178
Query: 72 CSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
S D ++ ++ + +F+ + I + + K ++ +D TL W L K
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238
Query: 132 SA 133
S
Sbjct: 239 SV 240
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL-EKLFKKAHKGTAVNHISIHPSGK 111
H+ + ++FT +G LIS S+D ++ +V +WQ + +F +AH+ T + + S
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSED---SVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRL 1065
Query: 112 LALSVGKDKTLRTWNLVKGR 131
L+ S D T++ WN++ GR
Sbjct: 1066 LSWSF--DGTVKVWNVITGR 1083
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 12 SHTASVRSVAATSK--LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL 69
+H V A +S A+ AD+ V ++D K +H + C FT + +HL
Sbjct: 662 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 721
Query: 70 ISCSDDGSIAIFRVGSWQL-EKLFKKAHKG--TAVNHISIHPSGKLALSVGKDKTLRTWN 126
+ + GS F + W L +K + G +VNH P +L S D TLR W+
Sbjct: 722 LLAT--GSNDFF-LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 778
Query: 127 L 127
+
Sbjct: 779 V 779
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 8 FVTHSHTASVR--SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
V HT +V + + AS GAD+T+ ++ ++ + HE + C F+ +
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 675
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG-KDKTLRT 124
S++ +CS D + I+ + +L + + + H + + S L L+ G D L+
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT-NKSNHLLLATGSNDFFLKL 734
Query: 125 WNL 127
W+L
Sbjct: 735 WDL 737
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
+ + F H T ++++ + +S+ AD+T ++ L H G + C F+
Sbjct: 1084 IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS 1143
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLEKLFKK--AHKGTA-----VNHISIHPSGKLALSV 116
+G L + D+G I I+ V QL +GTA V + P K +S
Sbjct: 1144 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1203
Query: 117 GKDKTLRTWNLVKGRSA--YITN 137
G L+ WN+ G S+ + TN
Sbjct: 1204 G--GYLKWWNVATGDSSQTFYTN 1224
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 4 LTQTFVTHSHTASVRSVAATSK--LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
L T+ HS + S L A+ D + L+D+ +++ + H ++ +
Sbjct: 698 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR 757
Query: 62 FTPEGSHLISCSDDGSIAIFRVGS 85
F+P+ L SCS DG++ ++ V S
Sbjct: 758 FSPDDELLASCSADGTLRLWDVRS 781
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 54 EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA--HKGTAVNHISIHPSGK 111
E ++C +P ++ +DG+I I + + ++F HK AV HI GK
Sbjct: 968 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHK-KAVRHIQFTADGK 1023
Query: 112 LALSVGKDKTLRTWNLVKGRSAYI 135
+S +D ++ WN G ++
Sbjct: 1024 TLISSSEDSVIQVWNWQTGDYVFL 1047
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
L + H T + LA + + V L+++ R + H + + F+
Sbjct: 839 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 898
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA 95
P+GS ++ SDD +I + W+ +K+ K +
Sbjct: 899 PDGSSFLTASDDQTIRV-----WETKKVCKNS 925
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 31 GADETVVLYDMVKRKQSGALMQ----HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW 86
A V+L+D+ SG L + H TI F+P HL + ++ + V W
Sbjct: 823 AAKNKVLLFDI---HTSGLLAEIHTGHHSTIQYCDFSPY-DHLAVIA----LSQYCVELW 874
Query: 87 QLEKLFKKAH-KG--TAVNHISIHPSGKLALSVGKDKTLRTW 125
++ K A +G + V+ + P G L+ D+T+R W
Sbjct: 875 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL-EKLFKKAHKGTAVNHISIHPSGK 111
H+ + ++FT +G LIS S+D ++ +V +WQ + +F +AH+ T + + S
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSED---SVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRL 1058
Query: 112 LALSVGKDKTLRTWNLVKGR 131
L+ S D T++ WN++ GR
Sbjct: 1059 LSWSF--DGTVKVWNVITGR 1076
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 12 SHTASVRSVAATSK--LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL 69
+H V A +S A+ AD+ V ++D K +H + C FT + +HL
Sbjct: 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 714
Query: 70 ISCSDDGSIAIFRVGSWQL-EKLFKKAHKG--TAVNHISIHPSGKLALSVGKDKTLRTWN 126
+ + GS F + W L +K + G +VNH P +L S D TLR W+
Sbjct: 715 LLAT--GSNDFF-LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Query: 127 L 127
+
Sbjct: 772 V 772
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 8 FVTHSHTASVR--SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
V HT +V + + AS GAD+T+ ++ ++ + HE + C F+ +
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 668
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG-KDKTLRT 124
S++ +CS D + I+ + +L + + + H + + S L L+ G D L+
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT-NKSNHLLLATGSNDFFLKL 727
Query: 125 WNL 127
W+L
Sbjct: 728 WDL 730
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
+ + F H T ++++ + +S+ AD+T ++ L H G + C F+
Sbjct: 1077 IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS 1136
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLEKLFKK--AHKGTA-----VNHISIHPSGKLALSV 116
+G L + D+G I I+ V QL +GTA V + P K +S
Sbjct: 1137 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196
Query: 117 GKDKTLRTWNLVKGRSA--YITN 137
G L+ WN+ G S+ + TN
Sbjct: 1197 G--GYLKWWNVATGDSSQTFYTN 1217
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 4 LTQTFVTHSHTASVRSVAATSK--LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
L T+ HS + S L A+ D + L+D+ +++ + H ++ +
Sbjct: 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR 750
Query: 62 FTPEGSHLISCSDDGSIAIFRVGS 85
F+P+ L SCS DG++ ++ V S
Sbjct: 751 FSPDDELLASCSADGTLRLWDVRS 774
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 54 EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA--HKGTAVNHISIHPSGK 111
E ++C +P ++ +DG+I I + + ++F HK AV HI GK
Sbjct: 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHK-KAVRHIQFTADGK 1016
Query: 112 LALSVGKDKTLRTWNLVKGRSAYI 135
+S +D ++ WN G ++
Sbjct: 1017 TLISSSEDSVIQVWNWQTGDYVFL 1040
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
L + H T + LA + + V L+++ R + H + + F+
Sbjct: 832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 891
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA 95
P+GS ++ SDD +I + W+ +K+ K +
Sbjct: 892 PDGSSFLTASDDQTIRV-----WETKKVCKNS 918
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 31 GADETVVLYDMVKRKQSGALMQ----HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW 86
A V+L+D+ SG L + H TI F+P HL + ++ + V W
Sbjct: 816 AAKNKVLLFDI---HTSGLLAEIHTGHHSTIQYCDFSPY-DHLAVIA----LSQYCVELW 867
Query: 87 QLEKLFKKAH-KG--TAVNHISIHPSGKLALSVGKDKTLRTW 125
++ K A +G + V+ + P G L+ D+T+R W
Sbjct: 868 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 13 HTASVRSVAATSK--LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
H+A V VA ++ A S+ D ++ L+++ + + H + + F+P+ ++
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPS--GKLALSVGKDKTLRTWNLV 128
S D ++ ++ V + L + AH V+ + PS + +S G D ++ W+L
Sbjct: 126 SGGRDNALRVWNVKGECMHTLSRGAHT-DWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 129 KGR 131
GR
Sbjct: 185 TGR 187
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 13 HTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ--HEGTITCLKFTP--EG 66
HT V SVA ++ S G D + +++ VK + L + H ++C++F+P +
Sbjct: 108 HTKDVLSVAFSPDNRQIVSGGRDNALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 67 SHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
++S D + ++ + + +L K H V +++ P G L S KD R W+
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDLK-GHT-NYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 127 LVKGRS 132
L KG +
Sbjct: 225 LTKGEA 230
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 17 VRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD 74
+RSV + K A+ D + ++D+ RK L HE I L + P G L+S S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 75 DGSIAIF--RVGSWQLEKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWN 126
D ++ I+ R G L + V +++ P GK + D+ +R W+
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIED-----GVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Score = 32.3 bits (72), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 57 ITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSV 116
I + F+P+G L + ++D I I+ + + ++ + + + + + PSG +S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD--IYSLDYFPSGDKLVSG 183
Query: 117 GKDKTLRTWNLVKGR 131
D+T+R W+L G+
Sbjct: 184 SGDRTVRIWDLRTGQ 198
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 19/94 (20%)
Query: 51 MQHEGTITCLKFTPEGSHLIS-CSDDGSIAIFRVGSWQL--------------EKLFKKA 95
+ H + C+KF+ +G +L + C + + ++RV L E L +
Sbjct: 61 LDHTSVVCCVKFSNDGEYLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS 118
Query: 96 HKGTA--VNHISIHPSGKLALSVGKDKTLRTWNL 127
+ + + P GK + +D+ +R W++
Sbjct: 119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 152
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 31 GADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK 90
G + +Y + ++ +G L+ H G I+ L+F L+S SDDG++ I+ G+ +
Sbjct: 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN 283
Query: 91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
F H + V+ + ++ S+ D ++R W+L
Sbjct: 284 CF-YGHSQSIVSASWVGDDKVISCSM--DGSVRLWSL 317
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 60 LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
L +P+ SC DG+IA++ + + L + F+ G + I I G + G D
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC--IDISNDGTKLWTGGLD 204
Query: 120 KTLRTWNLVKGR 131
T+R+W+L +GR
Sbjct: 205 NTVRSWDLREGR 216
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 3 TLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGT--ITCL 60
TL + F H+ AS ++ + G D TV +D+ + +Q L QH+ T I L
Sbjct: 174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ---LQQHDFTSQIFSL 230
Query: 61 KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
+ P G L + ++ + V + +K H+ + V + GK +S GKD
Sbjct: 231 GYCPTGEWLAVGMESSNVEVLHVN--KPDKYQLHLHE-SCVLSLKFAYCGKWFVSTGKDN 287
Query: 121 TLRTWNLVKGRSAY 134
L W G S +
Sbjct: 288 LLNAWRTPYGASIF 301
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 39.3 bits (90), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
H IT LKF P G LIS S D + I+ V + H+ T V I+I G+
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHRAT-VTDIAIIDRGRN 195
Query: 113 ALSVGKDKTLRTWNLVKGRSAYITN 137
LS D T+R W G + + N
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFN 220
Score = 30.8 bits (68), Expect = 0.26, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 29 SSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL 88
SS D + ++ + L+ H T+T + G +++S S DG+I ++ G+
Sbjct: 156 SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215
Query: 89 EKLF-KKAHKGTAVNHISIHPSGKLALSVGKDKTL 122
F +K + VN I AL VG D+ L
Sbjct: 216 IHTFNRKENPHDGVNSI--------ALFVGTDRQL 242
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query: 11 HSHTASV---RSVAATSKLAASSGADETVVLY--DMVKRKQSGALMQHEGTITCLKFTPE 65
+H ASV + V+ + ++ AD+T+ L+ D V + SG H + L +
Sbjct: 139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGI---HNDVVRHLAVVDD 195
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
G H ISCS+DG I + + + + + + H+ + V I + P+G + +S G+D+T+R W
Sbjct: 196 G-HFISCSNDGLIKLVDXHTGDVLRTY-EGHE-SFVYCIKLLPNGDI-VSCGEDRTVRIW 251
Query: 126 NLVKG 130
+ G
Sbjct: 252 SKENG 256
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
Query: 12 SHTASVRSVAATSKLAASSGADETVVLYDM-VKRKQSGALMQHEGTITCLKFTPEGSHLI 70
SH+A V S++ S + +S + +D+ V L H + L++ P+G HL
Sbjct: 107 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA 166
Query: 71 SCSDDGSIAIFRV----GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG---KDKTLR 123
S +D + ++ G W + F + H+G AV ++ P L+ G D+ +R
Sbjct: 167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQ-HQG-AVKAVAWCPWQSNVLATGGGTSDRHIR 224
Query: 124 TWNLVKG 130
WN+ G
Sbjct: 225 IWNVCSG 231
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
Query: 12 SHTASVRSVAATSKLAASSGADETVVLYDM-VKRKQSGALMQHEGTITCLKFTPEGSHLI 70
SH+A V S++ S + +S + +D+ V L H + L++ P+G HL
Sbjct: 187 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA 246
Query: 71 SCSDDGSIAIFRV----GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG---KDKTLR 123
S +D + ++ G W + F + H+G AV ++ P L+ G D+ +R
Sbjct: 247 SGGNDNLVNVWPSAPGEGGWVPLQTFTQ-HQG-AVKAVAWCPWQSNVLATGGGTSDRHIR 304
Query: 124 TWNLVKG 130
WN+ G
Sbjct: 305 IWNVCSG 311
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
Query: 12 SHTASVRSVAATSKLAASSGADETVVLYDM-VKRKQSGALMQHEGTITCLKFTPEGSHLI 70
SH+A V S++ S + +S + +D+ V L H + L++ P+G HL
Sbjct: 198 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA 257
Query: 71 SCSDDGSIAIFRV----GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG---KDKTLR 123
S +D + ++ G W + F + H+G AV ++ P L+ G D+ +R
Sbjct: 258 SGGNDNLVNVWPSAPGEGGWVPLQTFTQ-HQG-AVKAVAWCPWQSNVLATGGGTSDRHIR 315
Query: 124 TWNLVKG 130
WN+ G
Sbjct: 316 IWNVCSG 322
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 25 KLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV 83
K AS D + ++D+ K L H I L F+P+ L++ SDDG I I+ V
Sbjct: 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSI 78
++ T +AASS D + L+D+ KQ ++ L F+P+ +L + + G +
Sbjct: 87 DISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKV 146
Query: 79 AIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
IF V S +K + +G + I+ P GK S D + +++ G+
Sbjct: 147 NIFGVES--GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK 197
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 13 HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
H +RS+ + S+L ++ D + +YD+ +G L H + + F P+ +H +
Sbjct: 205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFV 264
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
S S D S+ ++ VG+ F V + + +G +SVG D+ + ++
Sbjct: 265 SSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
H IT LKF P G LIS S D + I+ V + H+ T V I+I G+
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHRAT-VTDIAIIDRGRN 192
Query: 113 ALSVGKDKTLRTWNLVKGRSAYITN 137
LS D T+R W G + + N
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFN 217
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 29 SSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL 88
SS D + ++ + L+ H T+T + G +++S S DG+I ++ G+
Sbjct: 153 SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 212
Query: 89 EKLF-KKAHKGTAVNHISIHPSGKLALSVGKDKTL 122
F +K + VN I AL VG D+ L
Sbjct: 213 IHTFNRKENPHDGVNSI--------ALFVGTDRQL 239
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.4 bits (80), Expect = 0.011, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 13 HTASVRSVA---ATSKLAASSGADETVVLYDMVKR---KQSGALMQHEGTITCLKFTPEG 66
HTA V V+ L S D+ ++++D K S ++ H + CL F P
Sbjct: 226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYS 285
Query: 67 SHLISC-SDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLAL-SVGKDKTLRT 124
+++ S D ++A++ + + +L+ ++HK + + P + L S G D+ L
Sbjct: 286 EFILATGSADKTVALWDLRNLKLKLHSFESHK-DEIFQVQWSPHNETILASSGTDRRLNV 344
Query: 125 WNLVK 129
W+L K
Sbjct: 345 WDLSK 349
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 98 GTAVNHISIHP-SGKLALSVGKDKTLRTWNL 127
G A+N + HP L LSV KD LR WN+
Sbjct: 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNI 145
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 98 GTAVNHISIHP-SGKLALSVGKDKTLRTWNL 127
G A+N + HP L LSV KD LR WN+
Sbjct: 114 GNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 1 KYTLTQTFVTHSHTASVRSVAATSKLA---ASSGADETVVLYDMVKRKQSGALM--QHEG 55
+ L QTF H H V VA K AS D TV ++ + + + L Q G
Sbjct: 129 NWALEQTFEGHEHF--VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 56 TITCLKFT-PEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHIS------IHP 108
+ P+ ++I+ SDD +I I W + K+ T H+S HP
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKI-----WDYQT---KSCVATLEGHMSNVSFAVFHP 238
Query: 109 SGKLALSVGKDKTLRTWN 126
+ + +S +D TL+ WN
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 32.3 bits (72), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 36 VVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA 95
V L++ + + ++ E + KF + +I SDD I +F + EK+
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDFE 94
Query: 96 HKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
+ I++HP+ LS D T++ WN
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 33 DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF 92
D T+ ++D + L H ++ F P +IS S+DG++ I+ ++++EK
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 93 KKAHKGTAVNHISIHPSGK 111
+ + I+ HP+G+
Sbjct: 267 NVGLERSWC--IATHPTGR 283
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 1 KYTLTQTFVTHSHTASVRSVAATSKLA---ASSGADETVVLYDMVKRKQSGALM--QHEG 55
+ L QTF H H V VA K AS D TV ++ + + + L Q G
Sbjct: 129 NWALEQTFEGHEHF--VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 56 TITCLKFT-PEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHIS------IHP 108
+ P+ ++I+ SDD +I I W + K+ T H+S HP
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKI-----WDYQT---KSCVATLEGHMSNVSFAVFHP 238
Query: 109 SGKLALSVGKDKTLRTWN 126
+ + +S +D TL+ WN
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 32.3 bits (72), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 36 VVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA 95
V L++ + + ++ E + KF + +I SDD I +F + EK+
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDFE 94
Query: 96 HKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
+ I++HP+ LS D T++ WN
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 33 DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF 92
D T+ ++D + L H ++ F P +IS S+DG++ I+ ++++EK
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 93 KKAHKGTAVNHISIHPSGK 111
+ + I+ HP+G+
Sbjct: 267 NVGLERSWC--IATHPTGR 283
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 98 GTAVNHISIHP-SGKLALSVGKDKTLRTWNL 127
G A+N + HP L LSV KD LR WN+
Sbjct: 114 GNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 98 GTAVNHISIHP-SGKLALSVGKDKTLRTWNL 127
G A+N + HP L LSV KD LR WN+
Sbjct: 110 GNAINELKFHPRDPNLLLSVSKDHALRLWNI 140
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 98 GTAVNHISIHP-SGKLALSVGKDKTLRTWNL 127
G A+N + HP L LSV KD LR WN+
Sbjct: 151 GNAINELKFHPRDPNLLLSVSKDHALRLWNI 181
>pdb|4H5I|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5I|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5J|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
pdb|4H5J|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
Length = 365
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 57 ITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSV 116
IT +G + S+D SIA+ ++ K+FK+AH A+ ++I P SV
Sbjct: 272 ITSXDVDXKGELAVLASNDNSIALVKLKDLSXSKIFKQAH-SFAITEVTISPDSTYVASV 330
Query: 117 GKDKTLRTWNLVKGRSAY 134
T+ L + Y
Sbjct: 331 SAANTIHIIKLPLNYANY 348
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 32.7 bits (73), Expect = 0.067, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 29 SSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL 88
++ D T+ ++D + L H ++ F P +IS S+DG++ I+ ++++
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 89 EKLFKKAHKGTAVNHISIHPSGK 111
EK + + I+ HP+G+
Sbjct: 263 EKTLNVGLERSWC--IATHPTGR 283
Score = 32.7 bits (73), Expect = 0.073, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 22/137 (16%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSK---LAASSGADETVVLYDMVKRKQSGALMQ-HEGTI 57
+ L QTF H H V VA K AS D TV ++ + + + L E +
Sbjct: 130 WALEQTFEGHEHF--VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 58 TCLKF--TPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHIS------IHPS 109
+ + P+ ++I+ SDD +I I W + K+ T H+S HP+
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKI-----WDYQT---KSCVATLEGHMSNVSFAVFHPT 239
Query: 110 GKLALSVGKDKTLRTWN 126
+ +S +D TL+ WN
Sbjct: 240 LPIIISGSEDGTLKIWN 256
Score = 30.4 bits (67), Expect = 0.30, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 61 KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
KF + +I SDD I +F + EK+ + I++HP+ LS D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 121 TLRTWN 126
T++ WN
Sbjct: 120 TVKLWN 125
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 32.7 bits (73), Expect = 0.072, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 29 SSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL 88
++ D T+ ++D + L H ++ F P +IS S+DG++ I+ ++++
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 89 EKLFKKAHKGTAVNHISIHPSGK 111
EK + + I+ HP+G+
Sbjct: 263 EKTLNVGLERSWC--IATHPTGR 283
Score = 32.3 bits (72), Expect = 0.080, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 22/137 (16%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSK---LAASSGADETVVLYDMVKRKQSGALMQ-HEGTI 57
+ L QTF H H V VA K AS D TV ++ + + + L E +
Sbjct: 130 WALEQTFEGHEHF--VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 58 TCLKF--TPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHIS------IHPS 109
+ + P+ ++I+ SDD +I I W + K+ T H+S HP+
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKI-----WDYQT---KSCVATLEGHMSNVSFAVFHPT 239
Query: 110 GKLALSVGKDKTLRTWN 126
+ +S +D TL+ WN
Sbjct: 240 LPIIISGSEDGTLKIWN 256
Score = 30.4 bits (67), Expect = 0.31, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 61 KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
KF + +I SDD I +F + EK+ + I++HP+ LS D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 121 TLRTWN 126
T++ WN
Sbjct: 120 TVKLWN 125
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.3 bits (72), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 50 LMQHEGTITCLKFTPEGSHLISCSDDGSIAI-FRVGSWQLEKLFKKAHKGTAVNHISIHP 108
L HE +T +K+ EG L SCS D S ++ + + +L L H GT + I +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL--DGHTGT-IWSIDVDC 84
Query: 109 SGKLALSVGKDKTLRTWNLVKGR 131
K ++ D +++ W++ G+
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQ 107
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.3 bits (72), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 4 LTQTFVTHSHTASVR--SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
L F + H V+ SV + A S G D +V ++D+ ++ + H + C+
Sbjct: 129 LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA 188
Query: 62 FTP-EGSHLISCSDDGSIAIF 81
P + + +SC +DG I ++
Sbjct: 189 ACPGKDTIFLSCGEDGRILLW 209
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 49 ALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL------FKKAHKGTAVN 102
A +Q E +T + + E L++ SD G++ ++ + LEK F K V
Sbjct: 89 AGVQTEAGVTDVAWVSEKGILVA-SDSGAVELWEI----LEKESLLVNKFAKYEHDDIVK 143
Query: 103 HISIHPSGKLALSVGKDKTLRTWNL 127
+S+ G A+S GKD +++ W+L
Sbjct: 144 TLSVFSDGTQAVSGGKDFSVKVWDL 168
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
+ HT++VR + K S D T+ ++D+ + LM H + C+++ +G ++
Sbjct: 196 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVV 253
Query: 71 SCSDDGSIAIFRVGSWQLE-KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK 129
S + D F V W E + +G S+ G +S D ++R W++
Sbjct: 254 SGAYD-----FMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET 308
Query: 130 GRSAY 134
G +
Sbjct: 309 GNCIH 313
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVG----SWQLEKLFKKAHKGTAVNHISIHP 108
H+ + + + G H+ +CS D I +F++ +W+L + +AH + V P
Sbjct: 8 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASP 66
Query: 109 S-GKLALSVGKDKTLRTW 125
G++ S DKT++ W
Sbjct: 67 EYGRIIASASYDKTVKLW 84
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 16 SVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD 75
S R + AT + E L + + +++ + +I +KF+P+GS L D
Sbjct: 195 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254
Query: 76 ---GSIAIF------RVGSWQLEKLFKKAHKG-----TAVNHISIHPSGKLALSVGKDKT 121
G I ++ R+GS + +A G + V +S + SG+ S G D
Sbjct: 255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 314
Query: 122 LRTWNL 127
LR W++
Sbjct: 315 LRFWDV 320
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVG----SWQLEKLFKKAHKGTAVNHISIHP 108
H+ + + + G H+ +CS D I +F++ +W+L + +AH + V P
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASP 68
Query: 109 S-GKLALSVGKDKTLRTW 125
G++ S DKT++ W
Sbjct: 69 EYGRIIASASYDKTVKLW 86
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 16 SVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD 75
S R + AT + E L + + +++ + +I +KF+P+GS L D
Sbjct: 205 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 264
Query: 76 ---GSIAIF------RVGSWQLEKLFKKAHKG-----TAVNHISIHPSGKLALSVGKDKT 121
G I ++ R+GS + +A G + V +S + SG+ S G D
Sbjct: 265 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 324
Query: 122 LRTWNL 127
LR W++
Sbjct: 325 LRFWDV 330
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVG----SWQLEKLFKKAHKGTAVNHISIHP 108
H+ + + + G H+ +CS D I +F++ +W+L + +AH + V P
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASP 68
Query: 109 S-GKLALSVGKDKTLRTW 125
G++ S DKT++ W
Sbjct: 69 EYGRIIASASYDKTVKLW 86
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.4 bits (67), Expect = 0.33, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 28 ASSGADETVVLYDMVKRKQSGALM---QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG 84
A++ D+TV ++D+ + + + + H + F+P+G+ L++ I ++
Sbjct: 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326
Query: 85 SW 86
W
Sbjct: 327 QW 328
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.4 bits (67), Expect = 0.33, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 28 ASSGADETVVLYDMVKRKQSGALM---QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG 84
A++ D+TV ++D+ + + + + H + F+P+G+ L++ I ++
Sbjct: 268 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 327
Query: 85 SW 86
W
Sbjct: 328 QW 329
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.4 bits (67), Expect = 0.35, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 28 ASSGADETVVLYDMVKRKQSGALM---QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG 84
A++ D+TV ++D+ + + + + H + F+P+G+ L++ I ++
Sbjct: 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326
Query: 85 SW 86
W
Sbjct: 327 QW 328
>pdb|3SFM|A Chain A, Novel Crystallization Conditions For Tandem Variant R67
Dhfr Yields Wild-Type Crystal Structure
Length = 62
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 32 ADETVVLYDMVKRKQSGALMQHEGTIT---CLKFTPEGSHLISCSDDGSIAIFRVGSWQL 88
+D T + D V RK+SGA Q G I C TPEG + S + GS+ I+ V + L
Sbjct: 4 SDATFGMGDRV-RKKSGAAWQ--GQIVGWYCTNLTPEGYAVESEAHPGSVQIYPVAA--L 58
Query: 89 EKL 91
E++
Sbjct: 59 ERI 61
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 26 LAASSGADETVVLYDMVKRKQSGALMQ-HEGTITCLKFTPEGS-HLISCSDDGSI 78
+ A+ G D + ++D+ + +L++ HE + + F P HL +CS+DGS+
Sbjct: 251 VVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSL 305
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex
Lacking The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex
Lacking The Arp2 Subunit
Length = 377
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 32 ADETVVLY--DMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV---GSW 86
A V LY D K + H+ +TC+ + P+ + +++CS D + ++ G+W
Sbjct: 31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW 90
Query: 87 Q 87
+
Sbjct: 91 K 91
>pdb|2GQV|A Chain A, High-Resolution Structure Of A Plasmid-Encoded
Dihydrofolate Reductase: Pentagonal Network Of Water
Molecules In The D2-Symmetric Active Site
pdb|1VIE|A Chain A, Structure Of Dihydrofolate Reductase
pdb|1VIF|A Chain A, Structure Of Dihydrofolate Reductase
pdb|2RH2|A Chain A, High Resolution Dhfr R-67
pdb|2RK1|A Chain A, Dhfr R67 Complexed With Nadp And Dihydrofolate
pdb|2RK2|A Chain A, Dhfr R-67 Complexed With Nadp
Length = 62
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 44 RKQSGALMQHEGTIT---CLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL 91
RK+SGA Q G I C TPEG + S + GS+ I+ V + LE++
Sbjct: 15 RKKSGAAWQ--GQIVGWYCTNLTPEGYAVESEAHPGSVQIYPVAA--LERI 61
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 31 GADETVVLYDMVKRKQSGALMQH--EGT-ITCLKFTPE-GSHLISCSDDGSIAIFRVGSW 86
G D +VV Y K S + H +G+ + ++F+P+ G +I+ D I+ F S
Sbjct: 180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239
Query: 87 QLEKLFKKAHKGT--AVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ K + + + +S S K A +VG D T+R W++
Sbjct: 240 EFLKYIEDDQEPVQGGIFALSWLDSQKFA-TVGADATIRVWDV 281
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 31 GADETVVLYDMVKRKQSGALMQH--EGT-ITCLKFTPE-GSHLISCSDDGSIAIFRVGSW 86
G D +VV Y K S + H +G+ + ++F+P+ G +I+ D I+ F S
Sbjct: 180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239
Query: 87 QLEKLFKKAHKGT--AVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ K + + + +S S K A +VG D T+R W++
Sbjct: 240 EFLKYIEDDQEPVQGGIFALSWLDSQKFA-TVGADATIRVWDV 281
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 8 FVTHSHTASVRSVAA---TSKLAASSGA--DETVVLYDMVKRKQSGALMQHEGTITCLKF 62
F +H A+V++VA S L A+ G D+ + ++ + + +T L +
Sbjct: 253 FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIW 311
Query: 63 TPEGSHLISCS--DDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
+P ++S D +++I+ S L K T V + ++ P G++ + D+
Sbjct: 312 SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371
Query: 121 TLRTWNLVKG 130
L+ W + G
Sbjct: 372 NLKFWRVYDG 381
>pdb|4HAC|A Chain A, Crystal Structure Of The Mevalonate Kinase From An
Archaeon Methanosarcina Mazei
Length = 321
Score = 28.9 bits (63), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 62 FTPEGSHLISCSDDGSIAIF 81
P GSH++SCS G I +F
Sbjct: 14 LVPRGSHMVSCSAPGKIYLF 33
>pdb|2P4T|A Chain A, Structure Of The Q67h Mutant Of R67 Dihydrofolate
Reductase- Nadp+ Complex Reveals A Novel Cofactor
Binding Mode
Length = 62
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 44 RKQSGALMQHEGTIT---CLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL 91
RK+SGA Q G I C TPEG + S + GS+ I+ V + LE++
Sbjct: 15 RKKSGAAWQ--GQIVGWYCTNLTPEGYAVESEAHPGSVHIYPVAA--LERI 61
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 48 GALMQ-HEGTITCLKFTPEGSHLISCSDDGS-IAIFRVGSWQLEKLFKKAHKGTAVNHIS 105
G L++ H + ++ +G + +CS DG+ I +F+ + L + F++ T++ +
Sbjct: 172 GVLVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMR 231
Query: 106 IHPSGKLALSVGKDK 120
P G L+V DK
Sbjct: 232 WSPDGS-KLAVVSDK 245
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 28 ASSGADETVVLYDMVKRKQS--GALMQHEGTITCLKFTPE--GSHLISCSDDGSIAIFRV 83
A+ +D +V ++D+ Q L HEG + + + G+ L SCS D + I+R
Sbjct: 29 ATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88
Query: 84 GSWQLEKLFKKAHKGTAVNHISIHP 108
+ EK + A ++VN + P
Sbjct: 89 ENGTWEKSHEHAGHDSSVNSVCWAP 113
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIF--RVGSWQLEKLFKKAHKGTAVNHISIHP-S 109
HE I + G+ L +CS D S+ IF R G Q+ + H+G HP
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMY 70
Query: 110 GKLALSVGKDKTLRTWNLVKG 130
G + S D+ + W G
Sbjct: 71 GNILASCSYDRKVIIWREENG 91
>pdb|4HAC|B Chain B, Crystal Structure Of The Mevalonate Kinase From An
Archaeon Methanosarcina Mazei
Length = 321
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 62 FTPEGSHLISCSDDGSIAIF 81
P GSH +SCS G I +F
Sbjct: 14 LVPRGSHXVSCSAPGKIYLF 33
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 25 KLAASSGADETVVLYDMVKR--KQSGALMQHEGTITCLKFT-PE-GSHLISCSDDGSIAI 80
K A+ +D+T+ ++++ K L HEG + + + P+ G+ L SCS DG + I
Sbjct: 22 KRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXI 81
Query: 81 FRVGSWQLEKLFKKAHKGTAVNHISIHP 108
++ + + ++ A +VN + P
Sbjct: 82 WKEENGRWSQIAVHAVHSASVNSVQWAP 109
>pdb|2WZM|A Chain A, Crystal Structure Of A Mycobacterium Aldo-Keto Reductase
In Its Apo And Liganded Form
pdb|2WZM|B Chain B, Crystal Structure Of A Mycobacterium Aldo-Keto Reductase
In Its Apo And Liganded Form
pdb|2WZT|A Chain A, Crystal Structure Of A Mycobacterium Aldo-keto Reductase
In Its Apo And Liganded Form
pdb|2WZT|B Chain B, Crystal Structure Of A Mycobacterium Aldo-keto Reductase
In Its Apo And Liganded Form
Length = 283
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 69 LISCSDDG---SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP 108
L+ +DG SI + G+ LE + + AVN I +HP
Sbjct: 132 LMKVKEDGIARSIGVCNFGAEDLETIVSLTYFTPAVNQIELHP 174
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 25 KLAASSGADETVVLYDMVKR--KQSGALMQHEGTITCLKFT-PE-GSHLISCSDDGSIAI 80
K A+ +D+T+ ++++ K L HEG + + + P+ G+ L SCS DG + I
Sbjct: 22 KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81
Query: 81 FRVGSWQLEKLFKKAHKGTAVNHISIHP 108
++ + + ++ A +VN + P
Sbjct: 82 WKEENGRWSQIAVHAVHSASVNSVQWAP 109
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 25 KLAASSGADETVVLYDMVKR--KQSGALMQHEGTITCLKFT-PE-GSHLISCSDDGSIAI 80
K A+ +D+T+ ++++ K L HEG + + + P+ G+ L SCS DG + I
Sbjct: 22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81
Query: 81 FRVGSWQLEKLFKKAHKGTAVNHI--SIHPSGKLALSVGKD 119
++ + + ++ A +VN + + H G L L D
Sbjct: 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 51 MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK-------LFKKAHKGTAVNH 103
+Q E + L + E L++ SD G++ + W+L++ F K V+
Sbjct: 79 VQTEAGVADLTWVGERGILVA-SDSGAVEL-----WELDENETLIVSKFCKYEHDDIVST 132
Query: 104 ISIHPSGKLALSVGKDKTLRTWNLVK 129
+S+ SG A+S KD ++ W+L +
Sbjct: 133 VSVLSSGTQAVSGSKDICIKVWDLAQ 158
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 95 AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT 136
AH G VN + G L+VG D +R WN G + +
Sbjct: 243 AHNG-KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVN 283
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 25 KLAASSGADETVVLYDMVKR--KQSGALMQHEGTITCLKFT-PE-GSHLISCSDDGSIAI 80
K A+ +D+T+ ++++ K L HEG + + + P+ G+ L SCS DG + I
Sbjct: 24 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83
Query: 81 FRVGSWQLEKLFKKAHKGTAVNHI--SIHPSGKLALSVGKD 119
++ + + ++ A +VN + + H G L L D
Sbjct: 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124
>pdb|3OFJ|A Chain A, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9
pdb|3OFK|A Chain A, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
pdb|3OFK|B Chain B, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
pdb|3OFK|C Chain C, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
pdb|3OFK|D Chain D, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
Length = 216
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 99 TAVNHI--SIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLS 139
TA++++ + P G L +D T R W V G IT L+
Sbjct: 135 TAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILT 177
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 25 KLAASSGADETVVLYDMVKR--KQSGALMQHEGTITCLKFT-PE-GSHLISCSDDGSIAI 80
K A+ +D+T+ ++++ K L HEG + + + P+ G+ L SCS DG + I
Sbjct: 22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81
Query: 81 FRVGSWQLEKLFKKAHKGTAVNHI--SIHPSGKLALSVGKD 119
++ + + ++ A +VN + + H G L L D
Sbjct: 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND
INHIBITOR Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND
INHIBITOR Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two
Binding Sites For Nucleation Promoting Factor Wasp-Vca
On Arp23 COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With
Bound Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 43 KRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIF 81
K Q L +H G +T + + P+ + +++C D + ++
Sbjct: 41 KWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVW 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.127 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,898,337
Number of Sequences: 62578
Number of extensions: 146814
Number of successful extensions: 819
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 256
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)