RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11518
(139 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 72.8 bits (177), Expect = 1e-16
Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 6/118 (5%)
Query: 13 HTASVRSVA--ATSKLAASSGADETVVL--YDMVKRKQSGALMQHEGTITCLKFTPEGSH 68
H + + ++ A+ D T L + + + IT + F+ G
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 69 LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
L++ DD + ++ + H V+ + + G + D L+ WN
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVL-AGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 72.1 bits (175), Expect = 2e-16
Identities = 24/107 (22%), Positives = 44/107 (41%)
Query: 25 KLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG 84
+L S D + L+D+ + HE I + F P G+ + SDD + +F +
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 85 SWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
+ Q + + + +S SG+L L+ D W+ +K
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Score = 57.1 bits (136), Expect = 3e-11
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 11 HSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH 68
+ + SV+ + +L + D ++D +K ++G L H+ ++CL T +G
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 69 LISCSDDGSIAIF 81
+ + S D + I+
Sbjct: 327 VATGSWDSFLKIW 339
Score = 42.4 bits (98), Expect = 4e-06
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 5/111 (4%)
Query: 17 VRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDG 76
R A + L+ + + V M R+ L H I + + + L+S S DG
Sbjct: 21 ARKACADATLSQITNNIDPVGRIQMRTRRT---LRGHLAKIYAMHWGTDSRLLVSASQDG 77
Query: 77 SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ I+ + + + V + PSG G D +NL
Sbjct: 78 KLIIWDSYTTNKVHAIP--LRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126
Score = 29.3 bits (64), Expect = 0.13
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
+ H + + +L +S +D L W+
Sbjct: 52 RGHLA-KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN 88
Score = 27.0 bits (58), Expect = 0.76
Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 3 TLTQTFVTHSHTASVRSVAAT--SKLAASSGADETVVLYD 40
+ V H V + T A+ D + +++
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 72.1 bits (175), Expect = 2e-16
Identities = 20/121 (16%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 5 TQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP 64
+ + ++ + + + S D+T+ ++D+ L+ H+ + + F
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 257
Query: 65 EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRT 124
G ++SC+DD ++ ++ + + K AH+ V + H + ++ D+T++
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEH-FVTSLDFHKTAPYVVTGSVDQTVKV 315
Query: 125 W 125
W
Sbjct: 316 W 316
Score = 56.3 bits (134), Expect = 6e-11
Identities = 16/79 (20%), Positives = 33/79 (41%)
Query: 3 TLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKF 62
T V H + + K S D+T+ ++D ++ L HE +T L F
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297
Query: 63 TPEGSHLISCSDDGSIAIF 81
++++ S D ++ ++
Sbjct: 298 HKTAPYVVTGSVDQTVKVW 316
Score = 52.1 bits (123), Expect = 2e-09
Identities = 35/146 (23%), Positives = 54/146 (36%), Gaps = 22/146 (15%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+TF H + L AS D+TV ++ + ++ L +H + C+ + PE
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196
Query: 66 --------------------GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHIS 105
G L+S S D +I ++ V + H V +
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDN-WVRGVL 254
Query: 106 IHPSGKLALSVGKDKTLRTWNLVKGR 131
H GK LS DKTLR W+ R
Sbjct: 255 FHSGGKFILSCADDKTLRVWDYKNKR 280
Score = 44.3 bits (103), Expect = 8e-07
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP 108
H +T + F P S ++S S+D +I ++ + E+ K H +V IS
Sbjct: 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTD-SVQDISFDH 69
Score = 41.7 bits (96), Expect = 8e-06
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 6 QTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
+ + H + V V + S+ D T+ ++D L H ++ + F
Sbjct: 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLR 123
G L SCS D +I ++ ++ + + +SI P+G +S +DKT++
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNV--SSVSIMPNGDHIVSASRDKTIK 126
Query: 124 TWNL 127
W +
Sbjct: 127 MWEV 130
Score = 41.3 bits (95), Expect = 1e-05
Identities = 19/127 (14%), Positives = 47/127 (37%), Gaps = 18/127 (14%)
Query: 23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR 82
S+ D+T+ ++++ H + ++ +G+ + SCS+D ++ ++
Sbjct: 112 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171
Query: 83 VGSWQLEKLFKKAHKG------------------TAVNHISIHPSGKLALSVGKDKTLRT 124
V + + + ++ T G LS +DKT++
Sbjct: 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231
Query: 125 WNLVKGR 131
W++ G
Sbjct: 232 WDVSTGM 238
Score = 36.3 bits (82), Expect = 6e-04
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
H+ V + HP + +S +D T++ W+ G
Sbjct: 14 SGHRS-PVTRVIFHPVFSVMVSASEDATIKVWDYETGD 50
Score = 25.9 bits (55), Expect = 1.8
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 3 TLTQTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYD 40
++H V S+ T+ + D+TV +++
Sbjct: 278 NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 62.9 bits (151), Expect = 3e-13
Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 20/134 (14%)
Query: 13 HTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALM------------QHEGTIT 58
H SV SV + S D +V L+++ H+ +
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 59 CLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGT-----AVNHISIHPSGKLA 113
+ T +++S S D + + S + + H+ + N S+ P +
Sbjct: 313 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-QGHRNSVISVAVANGSSLGPEYNVF 371
Query: 114 LSVGKDKTLRTWNL 127
+ D R W
Sbjct: 372 ATGSGDCKARIWKY 385
Score = 56.0 bits (133), Expect = 9e-11
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 17/121 (14%)
Query: 28 ASSGADETVVLYDMVKRKQSGALMQ-------HEGTITCLKFTPEGSHLISCSDDGSIAI 80
A+ D V ++D L H+ ++ + FT +G ++S S D S+ +
Sbjct: 221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 280
Query: 81 FRV----------GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ + V ++ + + LS KD+ + W+ G
Sbjct: 281 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 340
Query: 131 R 131
Sbjct: 341 N 341
Score = 40.6 bits (93), Expect = 2e-05
Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 21/120 (17%)
Query: 27 AASSGADETVVLYDMVKRKQSGA----LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR 82
A ++ +LY+ ++ + H + C+KF+ +G +L + + + ++R
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK-TTQVYR 89
Query: 83 VGSWQLEKLFKKAHKGT----------------AVNHISIHPSGKLALSVGKDKTLRTWN 126
V L + + P GK + +D+ +R W+
Sbjct: 90 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149
Score = 31.3 bits (69), Expect = 0.031
Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 21/98 (21%)
Query: 10 THSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRK------------------QSGA 49
+ HT+ V V + A+ G ++T +Y + + +
Sbjct: 58 SLDHTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS 116
Query: 50 LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ 87
+ I + F+P+G L + ++D I I+ + + +
Sbjct: 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK 154
Score = 24.0 bits (50), Expect = 9.8
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 8/47 (17%)
Query: 3 TLTQTFVTHSHTASVRSVAATSKLA--------ASSGADETVVLYDM 41
+ + H SV SVA + + A+ D ++
Sbjct: 339 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 62.5 bits (150), Expect = 4e-13
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 51 MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
HE + LKF G +S D + +R +F+ +V I
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQSKESS-SVLSCDISVDD 318
Query: 111 KLALSVGKDKTLRTWNLV 128
K ++ DK + ++
Sbjct: 319 KYIVTGSGDKKATVYEVI 336
Score = 51.3 bits (121), Expect = 4e-09
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
H A K S+G D + + S + ++ + + +++
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWR-TPYGASIFQSKESSSVLSCDISVDDKYIV 322
Query: 71 SCSDDGSIAIFRV 83
+ S D ++ V
Sbjct: 323 TGSGDKKATVYEV 335
Score = 45.2 bits (105), Expect = 5e-07
Identities = 12/111 (10%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 20 VAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIA 79
V A ++ + ++ + + + + H + + + H+ + G +
Sbjct: 17 VTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVK 75
Query: 80 IFRVGSWQ----LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
++ + + +L + + P G + G+ TL W+
Sbjct: 76 VWDISHPGNKSPVSQLDCLNRDN-YIRSCKLLPDGCTLIVGGEASTLSIWD 125
Score = 42.1 bits (97), Expect = 5e-06
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 10 THSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ-----HEGTITCLKF 62
T +H V +V ++ + G V ++D+ + Q + I K
Sbjct: 47 TLNHGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL 105
Query: 63 TPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP 108
P+G LI + +++I+ + + + A ++I P
Sbjct: 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Score = 34.0 bits (76), Expect = 0.003
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Query: 51 MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
I L + P G L + ++ + V ++ + V + G
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK---YQLHLHESCVLSLKFAYCG 277
Query: 111 KLALSVGKDKTLRTWNLVKGR 131
K +S GKD L W G
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGA 298
Score = 29.4 bits (64), Expect = 0.12
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 6 QTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMV 42
+ ++SV S K + D+ +Y+++
Sbjct: 298 ASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
Score = 29.0 bits (63), Expect = 0.17
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 79 AIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
A+ G + + + G V ++I + + G ++ W++
Sbjct: 32 ALIGPGIPRHARQINTLNHGEVVCAVTISNPTRH-VYTGGKGCVKVWDISHP 82
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 59.5 bits (142), Expect = 5e-12
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 57 ITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK-KAHKGTAVNHISIHPSGKLALS 115
I+C + + + + C ++ + I+ + ++ + K H G V + P ++
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVT 68
Query: 116 VGKDKTLRTWN 126
G D+ W
Sbjct: 69 CGTDRNAYVWT 79
Score = 52.6 bits (124), Expect = 1e-09
Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 5/123 (4%)
Query: 10 THS-HTASVRSVA--ATSKLAASSGADETVVLYDMV--KRKQSGALMQHEGTITCLKFTP 64
HS + A A + V +Y+ K Q L +H G +T + + P
Sbjct: 2 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61
Query: 65 EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRT 124
+ + +++C D + ++ + + A + P+ K + +
Sbjct: 62 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121
Query: 125 WNL 127
Sbjct: 122 CYF 124
Score = 37.9 bits (86), Expect = 2e-04
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 7 TFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEG 66
+F S + D+ +G H+ +++ + G
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA-AGAGLDSLHKNSVSQISVLSGG 337
Query: 67 ----SHLISCSDDGSIAIFRVGSWQLEKLFK 93
S + DG ++I+ V S LE K
Sbjct: 338 KAKCSQFCTTGMDGGMSIWDVRS--LESALK 366
Score = 35.6 bits (80), Expect = 0.001
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 7/103 (6%)
Query: 29 SSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL 88
++G D VL+ + + + D + GS
Sbjct: 259 AAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS--EGSAAA 316
Query: 89 EKLFKKAHKGTAVNHISIHPSGKLAL----SVGKDKTLRTWNL 127
HK + V+ IS+ GK + G D + W++
Sbjct: 317 GAGLDSLHKNS-VSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
Score = 29.8 bits (65), Expect = 0.10
Identities = 1/40 (2%), Positives = 10/40 (25%)
Query: 100 AVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLS 139
++ + + + + + + + L
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK 48
Score = 29.1 bits (63), Expect = 0.16
Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 6/138 (4%)
Query: 3 TLTQTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKR--KQSGALMQHEGTIT 58
Q H V V S + G D ++ + R K + +++
Sbjct: 40 KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99
Query: 59 CLKFTPEGSHLISCSDDGSIAIFRVGSWQ--LEKLFKKAHKGTAVNHISIHPSGKLALSV 116
C+++ P S I+I K + V + HP+ L +
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159
Query: 117 GKDKTLRTWNLVKGRSAY 134
D R ++
Sbjct: 160 SCDFKCRIFSAYIKEVEE 177
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 57.2 bits (136), Expect = 3e-11
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 13 HTASVRS-VAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLIS 71
H SV + + + D+ + +YD + +K L H+G + LK+ G L+S
Sbjct: 11 HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVS 69
Query: 72 CSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
S D ++ ++ + +F+ + I + + K ++ +D TL W L K
Sbjct: 70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129
Query: 132 S 132
S
Sbjct: 130 S 130
Score = 41.4 bits (95), Expect = 9e-06
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 51 MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
H ++ + +++ + I+ + S +L + ++
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD-QIWSVNFKGKT 336
Query: 111 KLALSVGKDKTLRTWNL 127
+A +V KD L
Sbjct: 337 LVA-AVEKDGQSFLEIL 352
Score = 36.8 bits (83), Expect = 4e-04
Identities = 10/71 (14%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGA-LMQHEGTITCLKFTPEGSHL 69
H++ +++ + + + S G++ +Y++ K A +++ I + F + +
Sbjct: 281 HTNLSAITTFYVSDNILVS-GSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LV 338
Query: 70 ISCSDDGSIAI 80
+ DG +
Sbjct: 339 AAVEKDGQSFL 349
Score = 27.9 bits (60), Expect = 0.46
Identities = 9/91 (9%), Positives = 21/91 (23%)
Query: 41 MVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTA 100
++ + G + K ++ T
Sbjct: 224 TIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 283
Query: 101 VNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
++ I+ L G + +NL G+
Sbjct: 284 LSAITTFYVSDNILVSGSENQFNIYNLRSGK 314
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 54.5 bits (129), Expect = 3e-10
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 39 YDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG 98
V S + H G++ L ++P+G+ + S S D +I I+ V + ++EK
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI-PVGTR 281
Query: 99 TAVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ I + + +S+ + + N
Sbjct: 282 IEDQQLGIIWTKQALVSISANGFINFVNP 310
Score = 46.0 bits (107), Expect = 3e-07
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 30 SGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSI 78
+V + + +H T K +P G + S G++
Sbjct: 34 YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNV 82
Score = 44.9 bits (104), Expect = 7e-07
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 55 GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLAL 114
GT L TP G + C+ S+ VGS +++ H PSG
Sbjct: 18 GTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYT-EHSH-QTTVAKTSPSGYYCA 74
Query: 115 SVGKDKTLRTWN 126
S +R W+
Sbjct: 75 SGDVHGNVRIWD 86
Score = 41.0 bits (94), Expect = 1e-05
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 24 SKLAASSGADETVVLYDMVKRKQSGALMQHEG-TITCLKFTPEGSHLISCSDDGSIAIF 81
AS+ AD+T+ ++++ K + L L+S S +G I
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
Score = 28.7 bits (62), Expect = 0.22
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 102 NHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
++ P G S DKT++ WN+ +
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLK 271
Score = 25.6 bits (54), Expect = 2.2
Identities = 4/40 (10%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 3 TLTQTFVTHS-HTASVRSVAATSKLAASSGADETVVLYDM 41
+ +T + + T + S A+ + +
Sbjct: 271 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 51.1 bits (120), Expect = 4e-09
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
H IT L + +G L S +G I + + + ++F H + I G L
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT-MITGIKTTSKGDL 69
Query: 113 ALSVGKDKTLRTWNL 127
+V D L+
Sbjct: 70 F-TVSWDDHLKVVPA 83
Score = 45.0 bits (104), Expect = 5e-07
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 51 MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK-LFKKAHKGTAVNHISIHPS 109
H + C+ ++P+ L + S D S+ ++ + + K AH ++VN +
Sbjct: 221 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE 280
Query: 110 GKLALSVGKDKTLRTWNL 127
+ S G+D ++ WN+
Sbjct: 281 TTIV-SAGQDSNIKFWNV 297
Score = 37.7 bits (85), Expect = 2e-04
Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 3 TLTQTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ-HEGTITC 59
++ Q + H ++ +++ A K S+ A+ + +D+ + H IT
Sbjct: 3 SIDQVR--YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60
Query: 60 LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAH 96
+K T + L + S D + + G ++ A+
Sbjct: 61 IKTTSK-GDLFTVSWDDHLKVVPAGGSGVDSSKAVAN 96
Score = 36.1 bits (81), Expect = 8e-04
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 96 HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS 132
H A+ +S GK S + + +W++ G S
Sbjct: 11 HNK-AITALSSSADGKTLFSADAEGHINSWDISTGIS 46
Score = 25.3 bits (53), Expect = 2.7
Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 3 TLTQTFVTHSHTASVRSVAATS--KLAASSGADETVVLYD 40
+ + +H S + S+G D + ++
Sbjct: 257 SDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 49.8 bits (117), Expect = 1e-08
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 38 LYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHK 97
+ + + + ++F+P L + DG I+ + + + + K F K ++
Sbjct: 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE 294
Query: 98 GTAVNHISIHPSGKLALSVGKDKTLRTWNLVK 129
+ V I S + D T +T +
Sbjct: 295 DSVV---KIACSDNILCLATSDDTFKTNAAID 323
Score = 49.5 bits (116), Expect = 2e-08
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRV--GSWQLEKLFKKAHKGTAVNHISIHPSG 110
+ I+ +K P S L+ S DGS+ +++ + ++ L +K + + +
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH-PLLCCNFIDNT 68
Query: 111 KLALSVG 117
L + VG
Sbjct: 69 DLQIYVG 75
Score = 44.1 bits (102), Expect = 1e-06
Identities = 8/72 (11%), Positives = 24/72 (33%), Gaps = 5/72 (6%)
Query: 9 VTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ---HEGTITCLKFT 63
+ + + + + L + D ++ +Y + ++ L+Q ++ + C F
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 64 PEGSHLISCSDD 75
I
Sbjct: 66 DNTDLQIYVGTV 77
Score = 35.2 bits (79), Expect = 0.002
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
+A K ++ I I PS L L D +L +
Sbjct: 8 QAPKDY-ISDIKIIPSKSLLLITSWDGSLTVYKFDIQA 44
Score = 29.4 bits (64), Expect = 0.13
Identities = 15/94 (15%), Positives = 21/94 (22%), Gaps = 13/94 (13%)
Query: 51 MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAV--------- 101
E S DG +A+ + K
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250
Query: 102 ----NHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
N I P K + G D + WNL +
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 48.4 bits (113), Expect = 3e-08
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 51 MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
+ E + + S D +I I+ V AHK VN++
Sbjct: 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPS 270
Query: 111 KLALSVGKDKTLRTWNLV 128
L S G D ++ WN+V
Sbjct: 271 TLV-SSGADACIKRWNVV 287
Score = 36.1 bits (81), Expect = 6e-04
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 11/61 (18%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
H IT L P LIS S DG I W + + H + + + +
Sbjct: 12 HNKGITALTVNP----LISGSYDGRIME-----WSSSSMH-QDHSN-LIVSLDNSKAQEY 60
Query: 113 A 113
+
Sbjct: 61 S 61
Score = 26.1 bits (55), Expect = 1.7
Identities = 5/41 (12%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY 134
H + ++++P +S D + W+ +
Sbjct: 10 SGHNK-GITALTVNP----LISGSYDGRIMEWSSSSMHQDH 45
Score = 24.9 bits (52), Expect = 4.7
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 11 HSHTASVRSVA-ATSKLAASSGADETVVLYDMV 42
++H V ++ T SSGAD + +++V
Sbjct: 255 NAHKDGVNNLLWETPSTLVSSGADACIKRWNVV 287
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 48.3 bits (113), Expect = 4e-08
Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 8/127 (6%)
Query: 9 VTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQ-SGALMQHEGTITCLKFTPEGS 67
H + + + S AD TV ++D+ + ++ +
Sbjct: 212 TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 271
Query: 68 HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGT---AVNHISIHPSGKLALSVGKDKT--- 121
+I+ SDDG++ ++ + + + + G V I + + ++ T
Sbjct: 272 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
Query: 122 -LRTWNL 127
L +
Sbjct: 332 KLLVLDF 338
Score = 45.6 bits (106), Expect = 4e-07
Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 3/121 (2%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HT V S+ S D ++ ++D+ L H+ + ++ + L+
Sbjct: 174 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILV 231
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
S + D ++ I+ + + Q + + +K + + ++ D T++ W+L G
Sbjct: 232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQ-SAVTCLQFNKNFVITSSDDGTVKLWDLKTG 290
Query: 131 R 131
Sbjct: 291 E 291
Score = 43.3 bits (100), Expect = 2e-06
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 6/120 (5%)
Query: 8 FVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGS 67
V H A+VR V + S D V ++D L H T +G
Sbjct: 131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQFDGI 188
Query: 68 HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
H++S S D SI ++ V + G + + +S D T++ W++
Sbjct: 189 HVVSGSLDTSIRVWDVETGNC----IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 244
Score = 39.4 bits (90), Expect = 5e-05
Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDM-----VKRKQSGALMQHEGT 56
L + H ++V + +S D TV L+D+ ++ + G
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307
Query: 57 ITCLKFTPEGSHLISCSDDGSIAIF 81
+ ++ + S +G+
Sbjct: 308 VWRIRASNTKLVCAVGSRNGTEETK 332
Score = 38.6 bits (88), Expect = 8e-05
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 3 TLTQTFVTHSHTASVRSVAATS-KLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
L V H V + S D T+ ++ V K L+ H G + +
Sbjct: 5 ELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 64
Query: 62 FTPEGSHLISC 72
S
Sbjct: 65 MRDNIIISGST 75
Score = 37.1 bits (84), Expect = 3e-04
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 50 LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPS 109
L H+ + G+ ++S SDD ++ ++ + + + H G V + +
Sbjct: 12 LKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTG-GVWSSQMRDN 68
Score = 35.9 bits (81), Expect = 7e-04
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 82 RVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
R G + K+ K H + + G +S D TL+ W+ V G+
Sbjct: 2 RRGELKSPKVLK-GHDDHVIT--CLQFCGNRIVSGSDDNTLKVWSAVTGK 48
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 47.9 bits (112), Expect = 6e-08
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 1 KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
Y + + SV + + ++ YD+ RK + + + +T L
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDL 320
Query: 61 KFTPEGSHLISCSDDGSIAIFRVGSWQLEK 90
+ + + ++ DDG I F + + E+
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPEDER 350
Score = 46.4 bits (108), Expect = 2e-07
Identities = 10/120 (8%), Positives = 31/120 (25%), Gaps = 6/120 (5%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
+ A + + D + L + ++
Sbjct: 233 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQ 292
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ G + + V + ++ ++ + + + K + D + T+ L K
Sbjct: 293 GAPEKGVLLKYDVKTRKVTEVKN------NLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346
Score = 26.7 bits (57), Expect = 0.95
Identities = 1/29 (3%), Positives = 5/29 (17%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIF 81
I ++ + +
Sbjct: 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLG 69
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 46.8 bits (109), Expect = 2e-07
Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 13/138 (9%)
Query: 1 KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ------HE 54
K + +H A + SV+A + S D + ++D + H+
Sbjct: 1 KVFIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK 60
Query: 55 GTITCLKF-------TPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIH 107
+ + E + + S G + +R+ K + + H
Sbjct: 61 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120
Query: 108 PSGKLALSVGKDKTLRTW 125
L D+ L
Sbjct: 121 SFWALKWGASNDRLLSHR 138
Score = 42.1 bits (97), Expect = 6e-06
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTA----VNHISI-- 106
H+ I + S +SCS DG + ++ E K++ ++H+ +
Sbjct: 13 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 107 -----HPSGKLALSVGKDKTLRTWNLVKGR 131
L + L + + +
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITRED 100
Score = 31.4 bits (69), Expect = 0.032
Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 21/143 (14%)
Query: 10 THSHTASVRSVAATSK-LAASSGADETVVLYDMVKRKQSGALMQHE------GTITCLKF 62
+ + SV + + L A+ + TV + ++ + +I +KF
Sbjct: 180 PMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239
Query: 63 TPEGSHLISCSDDGSIAIFR--------------VGSWQLEKLFKKAHKGTAVNHISIHP 108
+P+GS L D S V + + + + V +S +
Sbjct: 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 299
Query: 109 SGKLALSVGKDKTLRTWNLVKGR 131
SG+ S G D LR W++
Sbjct: 300 SGETLCSAGWDGKLRFWDVKTKE 322
Score = 28.7 bits (62), Expect = 0.24
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 21/102 (20%)
Query: 28 ASSGADETVVLYDMVKRKQSGALMQHEGTI----TCLKFTPEGSHLISCSDDGSIAIFRV 83
S+G D + +D+ +++ L H I L G L
Sbjct: 305 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP----------- 353
Query: 84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
G + ++ L K + V D+++R +
Sbjct: 354 GVFDVKFLKK------GWRSGMGADLNESLCCVCLDRSIRWF 389
Score = 27.9 bits (60), Expect = 0.42
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY 134
KAH + S+ +S D L+ W+ +
Sbjct: 11 KAHDA-DIF--SVSACNSFTVSCSGDGYLKVWDNKLLDNEN 48
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 43.4 bits (100), Expect = 2e-06
Identities = 9/78 (11%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Query: 51 MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
+ + + D +I ++ V + + + + + + + +G
Sbjct: 248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG 307
Query: 111 -KLALSVGKDKTLRTWNL 127
+S+ D TL + L
Sbjct: 308 NGRIISLSLDGTLNFYEL 325
Score = 39.9 bits (91), Expect = 4e-05
Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 4/80 (5%)
Query: 55 GTITCLKFTPEGSHLISCS-DDGSIAIFRVGSWQLEKLFK-KAHKGTAVNHISIHP--SG 110
T L + P + + + G ++ + + H + V + P
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 111 KLALSVGKDKTLRTWNLVKG 130
+ S + + W
Sbjct: 78 QYLCSGDESGKVIVWGWTFD 97
Score = 38.0 bits (86), Expect = 2e-04
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 24 SKLAASSGADETVVLYDMVKRK--QSGALMQHEGTITCLKFTPEG-SHLISCSDDGSIAI 80
S+ A+ GAD T+ ++D+ K Q L + + + G +IS S DG++
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
Query: 81 FRV 83
+ +
Sbjct: 323 YEL 325
Score = 34.5 bits (77), Expect = 0.002
Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 16/126 (12%)
Query: 1 KYTLTQTF-----VTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALM---Q 52
+L + + T + T+ +A G V D K +
Sbjct: 2 SISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH 61
Query: 53 HEGTITCLKFTPE--GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGT------AVNHI 104
+T +KF+P +L S + G + ++ + + K ++ I
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 105 SIHPSG 110
S G
Sbjct: 122 SWDFEG 127
Score = 24.1 bits (50), Expect = 7.0
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 102 NHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
+ +VG D T+R W++ +
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSK 284
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 41.0 bits (94), Expect = 1e-05
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 7/129 (5%)
Query: 3 TLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKF 62
T + H + + +L S +D T+ L+D+ + +
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI--ECGACLRVLEGHEELVRCI 224
Query: 63 TPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHK-GTAVNH----ISIHPSGKLALSVG 117
+ ++S + DG I ++ + + + T V H + +S
Sbjct: 225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSS 284
Query: 118 KDKTLRTWN 126
D T+ W+
Sbjct: 285 HDDTILIWD 293
Score = 40.6 bits (93), Expect = 2e-05
Identities = 11/62 (17%), Positives = 26/62 (41%)
Query: 1 KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
+++L + + V + + S D T+ ++D + L H G++ CL
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61
Query: 61 KF 62
++
Sbjct: 62 QY 63
Score = 36.0 bits (81), Expect = 6e-04
Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 52 QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG 98
+ + CL++ + ++S D +I I+ + + +++ H G
Sbjct: 13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTG 56
Score = 29.4 bits (64), Expect = 0.12
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 50 LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPS 109
L+ H + + F + S S D +I ++ + + + G +
Sbjct: 134 LVGHRAAVNVVDFDDKYIV--SASGDRTIKVWNTSTCEF----VRTLNGHKRGIACLQYR 187
Query: 110 GKLALSVGKDKTLRTWNL 127
+L +S D T+R W++
Sbjct: 188 DRLVVSGSSDNTIRLWDI 205
Score = 28.7 bits (62), Expect = 0.25
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 105 SIHPSGKLALSVGKDKTLRTWNLVKGR 131
+ + +S +D T++ W+
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIWDKNTLE 46
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 37.4 bits (85), Expect = 3e-04
Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 5/123 (4%)
Query: 10 THSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALM-QHEGTITCLKFTPEGSH 68
S ++ + A++ + D+ K +P+ +
Sbjct: 206 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN 265
Query: 69 LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV 128
I + +A + + +L K H ++ G G L +N
Sbjct: 266 QIYGVLN-RLAKYDLKQRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321
Query: 129 KGR 131
Sbjct: 322 TLE 324
Score = 34.3 bits (77), Expect = 0.003
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 5 TQTFVTHSHTASVRSVAATSKLA-ASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
T T T + + K G + YD+ +RK A + T C+ F
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA-NLDHTYYCVAFD 300
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLEKLFK 93
+G L +A+F + + K K
Sbjct: 301 KKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 36.7 bits (83), Expect = 5e-04
Identities = 10/84 (11%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 10 THSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL 69
S A + GA + +D +++ S + + + + +GS +
Sbjct: 236 VRIMDVFYFSTAVNPAKTRAFGAYNVLESFD-LEKNASIKRVPLPHSYYSVNVSTDGSTV 294
Query: 70 ISCSDDGSIAIFRVGSWQLEKLFK 93
G +A + + + +
Sbjct: 295 WLGGALGDLAAYDAETLEKKGQVD 318
Score = 31.7 bits (70), Expect = 0.021
Identities = 9/108 (8%), Positives = 25/108 (23%), Gaps = 6/108 (5%)
Query: 25 KLAASSGADETVVLYDMVKRK-QSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV 83
A + ++ D+ + + + P + + F +
Sbjct: 210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL 267
Query: 84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
K H + +++ G G L ++
Sbjct: 268 EKNASIKRVPLPH---SYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 35.6 bits (80), Expect = 0.001
Identities = 7/62 (11%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 70 ISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLV 128
I+ + I ++ + L + V + + P + L + V + + + +
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67
Query: 129 KG 130
Sbjct: 68 PD 69
Score = 27.1 bits (58), Expect = 0.74
Identities = 5/32 (15%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 53 HEGTITCLKFTPEGSHLI-SCSDDGSIAIFRV 83
E G +LI + I+++ +
Sbjct: 274 TETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 33.6 bits (76), Expect = 0.005
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 56 TITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALS 115
T + E ++ D G IA+ +++++ + G AV+ + SG+
Sbjct: 22 TQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLSASGRYLFV 78
Query: 116 VGKDKTLRTWNLVKGR 131
+G+D + +L
Sbjct: 79 IGRDGKVNMIDLWMKE 94
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 32.2 bits (71), Expect = 0.013
Identities = 5/56 (8%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 39 YDMVKRKQSGALMQHEGTITCLKFTPEGSHL-ISCSDDGSIAIFRVGSWQLEKLFK 93
+ A + + TP+G + ++ S ++++ + +
Sbjct: 228 MIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
Score = 28.7 bits (62), Expect = 0.23
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 90 KLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKGR 131
K+ + G I++ P GK + +++ T+ +
Sbjct: 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 31.8 bits (71), Expect = 0.018
Identities = 8/105 (7%), Positives = 28/105 (26%), Gaps = 6/105 (5%)
Query: 26 LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS 85
+ + + L D +K + + + + G +L+ D I + + +
Sbjct: 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWA 92
Query: 86 WQLEKLFK----KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
+ K+ + + + ++
Sbjct: 93 KEPTKVAEIKIGIEARSVES-SKFKGYEDRYTIAGAYWPPQFAIM 136
>d2rh2a1 b.34.4.1 (A:21-78) R67 dihydrofolate reductase
{Escherichia coli, plasmid PLZ1 [TaxId: 562]}
Length = 58
Score = 27.4 bits (60), Expect = 0.14
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 44 RKQSGALMQHEGTIT---CLKFTPEGSHLISCSDDGSIAIFRVGSWQ 87
RK+SGA Q G I C TPEG + S + GS+ I+ V + +
Sbjct: 11 RKKSGAAWQ--GQIVGWYCTNLTPEGYAVESEAHPGSVQIYPVAALE 55
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a
(LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 25.6 bits (56), Expect = 1.1
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 98 GTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
G +H+S H + + K L TW + K R
Sbjct: 52 GLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQR 85
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing
enzyme {Neurospora crassa [TaxId: 5141]}
Length = 365
Score = 26.3 bits (57), Expect = 1.6
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
+ I+ + F E ++ + + F V S G + +
Sbjct: 38 QDEPISWMTFDHERKNIY-GAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRA 96
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 25.4 bits (54), Expect = 2.5
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 53 HEGTITCLKFTPEGSHLISCSDD----GSIAIFRV 83
H T +F P + LI CS+D G ++ V
Sbjct: 273 HMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTV 307
>d1ni9a_ e.7.1.2 (A:) Glycerol metabolism protein GlpX {Escherichia
coli [TaxId: 562]}
Length = 328
Score = 25.2 bits (55), Expect = 3.6
Identities = 14/81 (17%), Positives = 22/81 (27%), Gaps = 6/81 (7%)
Query: 49 ALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIH- 107
A+ EGT +++ D G +EKL A I ++
Sbjct: 85 AVDPIEGTRMTAMGQANALAVLAVGDKGC--FLNAPDMYMEKL---IVGPGAKGTIDLNL 139
Query: 108 PSGKLALSVGKDKTLRTWNLV 128
P +V L
Sbjct: 140 PLADNLRNVAAALGKPLSELT 160
Score = 24.0 bits (52), Expect = 7.4
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 5 TQTFVTHSHTASVRSVAATSKL 26
T+T + + ++R + + L
Sbjct: 305 TETLLIRGKSRTIRRIQSIHYL 326
>d1a6sa_ a.61.1.4 (A:) GAG polyprotein M-domain {Rous sarcoma virus
[TaxId: 11886]}
Length = 87
Score = 22.9 bits (49), Expect = 9.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 113 ALSVGKDKTLRTWNLVKG 130
A+ +GK L+TW LV G
Sbjct: 62 AMILGKSGELKTWGLVLG 79
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.127 0.365
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 459,663
Number of extensions: 18352
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 102
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.8 bits)