BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11519
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DOV|A Chain A, Crystal Structure Of The Alpha-Catenin Dimerization Domain
Length = 181
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 61 TVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLE 120
V + +L N N + + E+ +L + +R +LKD R QM+AAR +L+
Sbjct: 75 VVEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGNRDQMAAARGILQ 134
Query: 121 RSTMLLLTSSKTCLRHPDSETARQNRDTVF 150
++ +L T+S+ CL+HPD + NRD ++
Sbjct: 135 KNVPILYTASQACLQHPDVAAYKANRDLIY 164
>pdb|1DOW|A Chain A, Crystal Structure Of A Chimera Of Beta-Catenin And Alpha-
Catenin
Length = 205
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 61 TVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLE 120
V + +L N N + + E+ +L +R +LKD R Q +AAR +L+
Sbjct: 100 VVEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIXAAKRQQELKDVGNRDQXAAARGILQ 159
Query: 121 RSTMLLLTSSKTCLRHPDSETARQNRDTVF 150
++ +L T+S+ CL+HPD + NRD ++
Sbjct: 160 KNVPILYTASQACLQHPDVAAYKANRDLIY 189
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 54.7 bits (130), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 62 VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
V + +L N N + + E+ +L + +R +LKD R QM+AAR +L++
Sbjct: 76 VEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAAARGILQK 135
Query: 122 STMLLLTSSKTCLRHPDSETARQNRDTVF 150
+ +L T+S+ CL+HPD + NRD ++
Sbjct: 136 NVPILYTASQACLQHPDVAAYKANRDLIY 164
>pdb|2L7A|A Chain A, Solution Structure Of The Talin Vbs2b Domain
Length = 131
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 15/77 (19%)
Query: 82 FSQFG--GEMVELAHVTGERGGDLKD------------ERRRAQMSAARQVLERSTMLLL 127
FS G GEMV A + + DL + E R +SAA+ +L +T ++
Sbjct: 33 FSSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAK-ILADATAKMV 91
Query: 128 TSSKTCLRHPDSETARQ 144
++K HPDSE +Q
Sbjct: 92 EAAKGAAAHPDSEEQQQ 108
>pdb|1U89|A Chain A, Solution Structure Of Vbs2 Fragment Of Talin
Length = 139
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 15/77 (19%)
Query: 82 FSQFG--GEMVELAHVTGERGGDLKD------------ERRRAQMSAARQVLERSTMLLL 127
FS G GEMV A + + DL + E R +SAA+ +L +T ++
Sbjct: 63 FSSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAK-ILADATAKMV 121
Query: 128 TSSKTCLRHPDSETARQ 144
++K HPDSE +Q
Sbjct: 122 EAAKGAAAHPDSEEQQQ 138
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 26.9 bits (58), Expect = 4.5, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 57 DFRSTVSRSLCRLENVTNFTEFVKAFSQFGG--EMVELAHVTGERGGDLKDERRRAQMSA 114
D + + ++ RL+ V N + V+ + + E+ L V G+R + KD +A+M
Sbjct: 569 DKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKK 628
Query: 115 ARQVLE 120
++E
Sbjct: 629 MYDLIE 634
>pdb|3H3E|A Chain A, Crystal Structure Of Tm1679, A Metal-Dependent Hydrolase
Of The Beta-Lactamase Superfamily
Length = 267
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 77 EFVKAFSQFGGEMVELAHVTGERGGDL 103
+ VKAF++ G E V H TGER D+
Sbjct: 219 KIVKAFNELGVETVVPCHCTGERAVDI 245
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 25.8 bits (55), Expect = 9.0, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 71 NVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSS 130
N T+ T ++AF +FG ++ ++ + ER D K R ++ LLL SS
Sbjct: 790 NWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGP-------VQMPYTLLLPSS 842
Query: 131 KTCL 134
K L
Sbjct: 843 KEGL 846
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 25.8 bits (55), Expect = 9.3, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 71 NVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSS 130
N T+ T ++AF +FG ++ ++ + ER D K R ++ LLL SS
Sbjct: 790 NWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGP-------VQMPYTLLLPSS 842
Query: 131 KTCL 134
K L
Sbjct: 843 KEGL 846
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,702,554
Number of Sequences: 62578
Number of extensions: 121799
Number of successful extensions: 181
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 10
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)