BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11519
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O88327|CTNL1_MOUSE Alpha-catulin OS=Mus musculus GN=Ctnnal1 PE=2 SV=1
Length = 731
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 72/92 (78%)
Query: 59 RSTVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQV 118
R+ + ++ RLE V +F EFV+ FSQFG EMVE AH+TG+R DLKDE+++A+M+ AR V
Sbjct: 170 RNKILATMERLEKVNSFQEFVQIFSQFGNEMVEFAHLTGDRQNDLKDEKKKARMAVARAV 229
Query: 119 LERSTMLLLTSSKTCLRHPDSETARQNRDTVF 150
LE+ TM+LLT+SKTCLRHP E+A N++ VF
Sbjct: 230 LEKGTMMLLTASKTCLRHPSCESAHTNKEGVF 261
>sp|Q5RC06|CTNL1_PONAB Alpha-catulin OS=Pongo abelii GN=CTNNAL1 PE=2 SV=1
Length = 734
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 76/95 (80%)
Query: 56 IDFRSTVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAA 115
I R+ V ++ RLE V +F EFV+ FSQFG EMVE AH++G+R DLKDE+++A+M+AA
Sbjct: 168 ITSRNKVLATMERLEKVNSFQEFVQIFSQFGNEMVEFAHLSGDRQNDLKDEKKKAKMAAA 227
Query: 116 RQVLERSTMLLLTSSKTCLRHPDSETARQNRDTVF 150
R VLE+ TM+LLT+SKTCLRHP+ E+A +N++ VF
Sbjct: 228 RAVLEKCTMMLLTASKTCLRHPNCESAHKNKEGVF 262
>sp|Q9UBT7|CTNL1_HUMAN Alpha-catulin OS=Homo sapiens GN=CTNNAL1 PE=1 SV=2
Length = 734
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 76/95 (80%)
Query: 56 IDFRSTVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAA 115
I R+ V ++ RLE V +F EFV+ FSQFG EMVE AH++G+R DLKDE+++A+M+AA
Sbjct: 168 ITSRNKVLATMERLEKVNSFQEFVQIFSQFGNEMVEFAHLSGDRQNDLKDEKKKAKMAAA 227
Query: 116 RQVLERSTMLLLTSSKTCLRHPDSETARQNRDTVF 150
R VLE+ TM+LLT+SKTCLRHP+ E+A +N++ VF
Sbjct: 228 RAVLEKCTMMLLTASKTCLRHPNCESAHKNKEGVF 262
>sp|P30997|CTNA2_CHICK Catenin alpha-2 OS=Gallus gallus GN=CTNNA2 PE=1 SV=1
Length = 906
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%)
Query: 62 VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
V +L ++N TN + F +FG EMV+L +V R +LKD R +M+AAR L++
Sbjct: 156 VEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKK 215
Query: 122 STMLLLTSSKTCLRHPDSETARQNRDTVF 150
+ +L T+S+ LRHPD R NRD VF
Sbjct: 216 NATMLYTASQAFLRHPDVAATRANRDYVF 244
>sp|Q5R416|CTNA2_PONAB Catenin alpha-2 OS=Pongo abelii GN=CTNNA2 PE=2 SV=3
Length = 905
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%)
Query: 62 VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
V +L ++N TN + F +FG EMV+L +V R +LKD R +M+AAR L++
Sbjct: 156 VEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKK 215
Query: 122 STMLLLTSSKTCLRHPDSETARQNRDTVF 150
+ +L T+S+ LRHPD R NRD VF
Sbjct: 216 NATMLYTASQAFLRHPDVAATRANRDYVF 244
>sp|Q61301|CTNA2_MOUSE Catenin alpha-2 OS=Mus musculus GN=Ctnna2 PE=1 SV=3
Length = 953
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%)
Query: 62 VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
V +L ++N TN + F +FG EMV+L +V R +LKD R +M+AAR L++
Sbjct: 156 VEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKK 215
Query: 122 STMLLLTSSKTCLRHPDSETARQNRDTVF 150
+ +L T+S+ LRHPD R NRD VF
Sbjct: 216 NATMLYTASQAFLRHPDVAATRANRDYVF 244
>sp|P26232|CTNA2_HUMAN Catenin alpha-2 OS=Homo sapiens GN=CTNNA2 PE=1 SV=5
Length = 953
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%)
Query: 62 VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
V +L ++N TN + F +FG EMV+L +V R +LKD R +M+AAR L++
Sbjct: 156 VEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKK 215
Query: 122 STMLLLTSSKTCLRHPDSETARQNRDTVF 150
+ +L T+S+ LRHPD R NRD VF
Sbjct: 216 NATMLYTASQAFLRHPDVAATRANRDYVF 244
>sp|A4IGI7|CTNA2_XENTR Catenin alpha-2 OS=Xenopus tropicalis GN=ctnna2 PE=2 SV=1
Length = 966
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%)
Query: 62 VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
V +L ++N TN + F +FG EMV+L +V R +LKD R +M+AAR L++
Sbjct: 156 VEEALESVKNATNEQDLAHRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKK 215
Query: 122 STMLLLTSSKTCLRHPDSETARQNRDTVF 150
+ +L T+S+ LRHPD R NRD VF
Sbjct: 216 NATMLYTASQAFLRHPDVAATRANRDYVF 244
>sp|Q6GLP0|CTNA2_XENLA Catenin alpha-2 OS=Xenopus laevis GN=ctnna2 PE=2 SV=1
Length = 966
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%)
Query: 62 VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
V +L ++N TN + F +FG EMV+L +V R +LKD R +M+AAR L++
Sbjct: 156 VEEALEMVKNATNEQDLAHRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKK 215
Query: 122 STMLLLTSSKTCLRHPDSETARQNRDTVF 150
+ +L T+S+ LRH D R NRD VF
Sbjct: 216 NATMLYTASQAFLRHSDVAATRANRDYVF 244
>sp|P35220|CTNA_DROME Catenin alpha OS=Drosophila melanogaster GN=alpha-Cat PE=1 SV=2
Length = 917
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%)
Query: 62 VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
V L +L+N ++ E + QFG EL +R +LKD + R ++AAR +L++
Sbjct: 162 VEDDLNKLKNASSQDELMDNMRQFGRNAGELIKQAAKRQQELKDPQLRDDLAAARAMLKK 221
Query: 122 STMLLLTSSKTCLRHPDSETARQNRDTVF 150
+ +LLT+SK +RHP+ + A+ NRD +
Sbjct: 222 HSTMLLTASKVYVRHPELDLAKVNRDFIL 250
>sp|P35221|CTNA1_HUMAN Catenin alpha-1 OS=Homo sapiens GN=CTNNA1 PE=1 SV=1
Length = 906
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 62 VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
V + +L N N + + E+ +L + +R +LKD R QM+AAR +L++
Sbjct: 157 VEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAAARGILQK 216
Query: 122 STMLLLTSSKTCLRHPDSETARQNRDTVF 150
+ +L T+S+ CL+HPD + NRD ++
Sbjct: 217 NVPILYTASQACLQHPDVAAYKANRDLIY 245
>sp|Q59I72|CTNA1_RABIT Catenin alpha-1 OS=Oryctolagus cuniculus GN=CTNNA1 PE=3 SV=1
Length = 907
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 62 VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
V + +L N N + + E+ +L + +R +LKD R QM+AAR +L++
Sbjct: 157 VEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAAARGILQK 216
Query: 122 STMLLLTSSKTCLRHPDSETARQNRDTVF 150
+ +L T+S+ CL+HPD + NRD ++
Sbjct: 217 NVPILYTASQACLQHPDVAAYKANRDLIY 245
>sp|P26231|CTNA1_MOUSE Catenin alpha-1 OS=Mus musculus GN=Ctnna1 PE=1 SV=1
Length = 906
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 62 VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
V + +L N N + + E+ +L + +R +LKD R QM+AAR +L++
Sbjct: 157 VEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGNRDQMAAARGILQK 216
Query: 122 STMLLLTSSKTCLRHPDSETARQNRDTVF 150
+ +L T+S+ CL+HPD + NRD ++
Sbjct: 217 NVPILYTASQACLQHPDVAAYKANRDLIY 245
>sp|Q3MHM6|CTNA1_BOVIN Catenin alpha-1 OS=Bos taurus GN=CTNNA1 PE=2 SV=1
Length = 906
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%)
Query: 62 VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
V + +L N + + E+ +L + +R +LKD R QM+AAR +L++
Sbjct: 157 VEDGILKLRNAGTEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAAARGILQK 216
Query: 122 STMLLLTSSKTCLRHPDSETARQNRDTVF 150
+ +L T+S+ CL+HPD + NRD ++
Sbjct: 217 NVPILYTASQACLQHPDVAAYKANRDLIY 245
>sp|Q9UI47|CTNA3_HUMAN Catenin alpha-3 OS=Homo sapiens GN=CTNNA3 PE=1 SV=2
Length = 895
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%)
Query: 60 STVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVL 119
S R+ L+NV N ++ K + + G E+ L ++ +R DLK +R +++ AR L
Sbjct: 152 SAFQRTFESLKNVANKSDLQKTYQKLGKELENLDYLAFKRQQDLKSPNQRDEIAGARASL 211
Query: 120 ERSTMLLLTSSKTCLRHPDSETARQNRDTV 149
+ ++ LL + CL H D + + ++DTV
Sbjct: 212 KENSPLLHSICSACLEHSDVASLKASKDTV 241
>sp|Q65CL1|CTNA3_MOUSE Catenin alpha-3 OS=Mus musculus GN=Ctnna3 PE=1 SV=2
Length = 895
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%)
Query: 60 STVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVL 119
S+ R+ L+NV+N ++ + + + G E+ L ++ +R DLK +R +++ AR L
Sbjct: 152 SSFQRTFESLKNVSNKSDLQRTYQKLGKELESLDYLAFKRQQDLKSPSQRDEIAGARATL 211
Query: 120 ERSTMLLLTSSKTCLRHPDSETARQNRDTV 149
+ ++ LL + CL H D + + ++DTV
Sbjct: 212 KENSPLLHSICSACLEHSDVASLKASKDTV 241
>sp|B7ZC77|CTNA2_DANRE Catenin alpha-2 OS=Danio rerio GN=Ctnna2 PE=2 SV=1
Length = 865
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 92 LAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETARQNRDTVF 150
LAH+ E LKD + R +M+AAR L+++ +L T+S+ LRHPD R NRD VF
Sbjct: 150 LAHLKIE----LKDPQCRDEMAAARGALKKNATMLYTASQAFLRHPDVAATRANRDYVF 204
>sp|P90947|HMP1_CAEEL Protein humpback-1 OS=Caenorhabditis elegans GN=hmp-1 PE=1 SV=2
Length = 927
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 99 RGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETARQNRD 147
R DL +R + AAR L ++ LL TS++T +RHP+ E AR+NRD
Sbjct: 189 RAIDLVKPNQRDDLLAARSALRQTAPLLYTSTRTFVRHPEHEEARRNRD 237
>sp|P49035|SUS1_DAUCA Sucrose synthase isoform 1 OS=Daucus carota PE=2 SV=1
Length = 808
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 65 SLCRLENVTNFTEFVKAFSQFGG--EMVELAHVTGERGGDLKDERRRAQMSAARQVLE 120
++ RL+NV N T FV+ +++ E+V L V G+R + KD +AQM ++++
Sbjct: 577 TMARLDNVKNLTGFVEWYAKSPKLRELVNLVVVGGDRRKESKDLEEQAQMKKMYELID 634
>sp|Q74ZG2|GUF1_ASHGO Translation factor GUF1, mitochondrial OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=GUF1 PE=3 SV=1
Length = 644
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 14/64 (21%)
Query: 3 DQITSALELTISMSLKMCSLSTHSRPAVNRCRLNRPYCLDNIDSLLHLVDPPS-IDFRST 61
D++ E I++ + CS+ H + +D LLHLVD P +DFRS
Sbjct: 84 DKLEVERERGITVKAQTCSMFYHDKRT-------------GLDYLLHLVDTPGHVDFRSE 130
Query: 62 VSRS 65
VSRS
Sbjct: 131 VSRS 134
>sp|B2USI5|LEPA_HELPS Elongation factor 4 OS=Helicobacter pylori (strain Shi470) GN=lepA
PE=3 SV=1
Length = 602
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 34 RLNRPYCLDNIDSLLHLVDPPS-IDFRSTVSRSLCRLEN---VTNFTEFVKA 81
RLN Y L D +L+L+D P +DF VSRSLC E V + T+ V+A
Sbjct: 66 RLN--YTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEA 115
>sp|Q17X87|LEPA_HELAH Elongation factor 4 OS=Helicobacter acinonychis (strain Sheeba)
GN=lepA PE=3 SV=1
Length = 604
Score = 33.5 bits (75), Expect = 0.52, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 34 RLNRPYCLDNIDSLLHLVDPPS-IDFRSTVSRSLCRLEN---VTNFTEFVKA 81
RLN Y L D +L+L+D P +DF VSRSLC E V + T+ V+A
Sbjct: 68 RLN--YTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEA 117
>sp|Q7S0P6|GUF1_NEUCR Translation factor guf1, mitochondrial OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=guf1 PE=3 SV=1
Length = 662
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 42 DNIDSLLHLVDPPS-IDFRSTVSRS 65
D +D LLHLVD P +DFR+ V+RS
Sbjct: 127 DGLDYLLHLVDTPGHVDFRAEVTRS 151
>sp|D1ZET3|GUF1_SORMK Translation factor GUF1, mitochondrial OS=Sordaria macrospora
(strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)
GN=GUF1 PE=3 SV=1
Length = 690
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 42 DNIDSLLHLVDPPS-IDFRSTVSRS 65
D +D LLHLVD P +DFR+ V+RS
Sbjct: 155 DGLDYLLHLVDTPGHVDFRAEVTRS 179
>sp|C5M6K8|GUF1_CANTT Translation factor GUF1, mitochondrial OS=Candida tropicalis
(strain ATCC MYA-3404 / T1) GN=GUF1 PE=3 SV=1
Length = 653
Score = 33.1 bits (74), Expect = 0.71, Method: Composition-based stats.
Identities = 16/24 (66%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 43 NIDSLLHLVDPPS-IDFRSTVSRS 65
N D LLHLVD P +DFR+ VSRS
Sbjct: 120 NQDYLLHLVDTPGHVDFRAEVSRS 143
>sp|C5DN84|GUF1_LACTC Translation factor GUF1, mitochondrial OS=Lachancea thermotolerans
(strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=GUF1
PE=3 SV=1
Length = 640
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 16/24 (66%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 43 NIDSLLHLVDPPS-IDFRSTVSRS 65
N D LLHLVD P +DFR+ VSRS
Sbjct: 106 NKDYLLHLVDTPGHVDFRAEVSRS 129
>sp|B5ZBD4|LEPA_UREU1 Elongation factor 4 OS=Ureaplasma urealyticum serovar 10 (strain
ATCC 33699 / Western) GN=lepA PE=3 SV=1
Length = 599
Score = 32.3 bits (72), Expect = 1.00, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 19/75 (25%)
Query: 1 MNDQITSALELT----ISMSLKMCSLSTHSRPAVNRCRLNRPYCLDNIDSLLHLVDPPS- 55
M +QI ++++ I++ L + H+R DN + L+HL+D P
Sbjct: 38 MTNQILDSMDIERERGITIKLNAVQIKYHAR--------------DNNEYLIHLIDTPGH 83
Query: 56 IDFRSTVSRSLCRLE 70
+DF VSRSL E
Sbjct: 84 VDFTYEVSRSLAACE 98
>sp|P19693|VC10A_BPT3 Major capsid protein 10A OS=Enterobacteria phage T3 GN=10 PE=3 SV=1
Length = 347
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 1 MNDQITSALELTISMSLKMCSLSTHSRPAVNRCRLNRPYCLDNIDSLLHLVDPPSIDFRS 60
+ D + + +++ SL+ + PA +R P DN ++L + P + ++++
Sbjct: 174 LTDPVELGKAIIAQLTIARASLTKNYVPAADRTFYTTP---DNYSAILAALMPNAANYQA 230
Query: 61 TVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDE 106
+ + NV F E+VE+ H+T GD +++
Sbjct: 231 LLDPERGTIRNVMGF------------EVVEVPHLTAGGAGDTRED 264
>sp|B6JKS8|LEPA_HELP2 Elongation factor 4 OS=Helicobacter pylori (strain P12) GN=lepA
PE=3 SV=1
Length = 604
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 34 RLNRPYCLDNIDSLLHLVDPPS-IDFRSTVSRSLCRLEN---VTNFTEFVKA 81
RLN Y D +L+L+D P +DF VSRSLC E V + T+ V+A
Sbjct: 68 RLN--YTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEA 117
>sp|P54939|TLN1_CHICK Talin-1 OS=Gallus gallus GN=TLN1 PE=1 SV=2
Length = 2541
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 70 ENVTNFTEFVKAFSQFG--GEMVELAHVTGERGGDLKD------------ERRRAQMSAA 115
+ + N TE + FS G GEMV A + + DL + E R +SAA
Sbjct: 803 DTILNVTENI--FSSMGDAGEMVRQARILAQATSDLVNAIKADAEGETDLENSRKLLSAA 860
Query: 116 RQVLERSTMLLLTSSKTCLRHPDSETARQ 144
+ +L +T ++ ++K HPDSE +Q
Sbjct: 861 K-ILADATAKMVEAAKGAAAHPDSEEQQQ 888
>sp|Q9ZM93|LEPA_HELPJ Elongation factor 4 OS=Helicobacter pylori (strain J99) GN=lepA
PE=3 SV=1
Length = 604
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 34 RLNRPYCLDNIDSLLHLVDPPS-IDFRSTVSRSLCRLEN---VTNFTEFVKA 81
RLN Y D +L+L+D P +DF VSRSLC E V + T+ V+A
Sbjct: 68 RLN--YTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEA 117
>sp|Q1CUF5|LEPA_HELPH Elongation factor 4 OS=Helicobacter pylori (strain HPAG1) GN=lepA
PE=3 SV=1
Length = 602
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 34 RLNRPYCLDNIDSLLHLVDPPS-IDFRSTVSRSLCRLEN---VTNFTEFVKA 81
RLN Y D +L+L+D P +DF VSRSLC E V + T+ V+A
Sbjct: 66 RLN--YTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEA 115
>sp|B5ZAB8|LEPA_HELPG Elongation factor 4 OS=Helicobacter pylori (strain G27) GN=lepA
PE=3 SV=1
Length = 602
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 34 RLNRPYCLDNIDSLLHLVDPPS-IDFRSTVSRSLCRLEN---VTNFTEFVKA 81
RLN Y D +L+L+D P +DF VSRSLC E V + T+ V+A
Sbjct: 66 RLN--YTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEA 115
>sp|O25122|LEPA_HELPY Elongation factor 4 OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=lepA PE=3 SV=1
Length = 602
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 34 RLNRPYCLDNIDSLLHLVDPPS-IDFRSTVSRSLCRLEN---VTNFTEFVKA 81
RLN Y D +L+L+D P +DF VSRSLC E V + T+ V+A
Sbjct: 66 RLN--YTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEA 115
>sp|Q6CUH2|GUF1_KLULA Translation factor GUF1, mitochondrial OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=GUF1 PE=3 SV=1
Length = 631
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 44 IDSLLHLVDPPS-IDFRSTVSRS 65
+D LLHLVD P +DFR+ VSRS
Sbjct: 99 LDYLLHLVDTPGHVDFRAEVSRS 121
>sp|B9WBR8|GUF1_CANDC Translation factor GUF1, mitochondrial OS=Candida dubliniensis
(strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 /
NRRL Y-17841) GN=GUF1 PE=3 SV=1
Length = 654
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 45 DSLLHLVDPPS-IDFRSTVSRS 65
D LLHLVD P +DFR+ VSRS
Sbjct: 123 DYLLHLVDTPGHVDFRAEVSRS 144
>sp|C4Y8M4|GUF1_CLAL4 Translation factor GUF1, mitochondrial OS=Clavispora lusitaniae
(strain ATCC 42720) GN=GUF1 PE=3 SV=1
Length = 664
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 45 DSLLHLVDPPS-IDFRSTVSRS 65
D LLHLVD P +DFR+ VSRS
Sbjct: 132 DYLLHLVDTPGHVDFRAEVSRS 153
>sp|Q4WYV0|GUF1_ASPFU Translation factor guf1, mitochondrial OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=guf1 PE=3 SV=2
Length = 683
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 45 DSLLHLVDPPS-IDFRSTVSRS 65
D LLHLVD P +DFR+ VSRS
Sbjct: 132 DYLLHLVDTPGHVDFRAEVSRS 153
>sp|B0XZZ2|GUF1_ASPFC Translation factor guf1, mitochondrial OS=Neosartorya fumigata
(strain CEA10 / CBS 144.89 / FGSC A1163) GN=guf1 PE=3
SV=2
Length = 683
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 45 DSLLHLVDPPS-IDFRSTVSRS 65
D LLHLVD P +DFR+ VSRS
Sbjct: 132 DYLLHLVDTPGHVDFRAEVSRS 153
>sp|P19728|VC10B_BPT3 Minor capsid protein 10B OS=Enterobacteria phage T3 GN=10 PE=3 SV=2
Length = 433
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 1 MNDQITSALELTISMSLKMCSLSTHSRPAVNRCRLNRPYCLDNIDSLLHLVDPPSIDFRS 60
+ D + + +++ SL+ + PA +R P DN ++L + P + ++++
Sbjct: 174 LTDPVELGKAIIAQLTIARASLTKNYVPAADRTFYTTP---DNYSAILAALMPNAANYQA 230
Query: 61 TVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDE 106
+ + NV F E+VE+ H+T GD +++
Sbjct: 231 LLDPERGTIRNVMGF------------EVVEVPHLTAGGAGDTRED 264
>sp|C4YIT6|GUF1_CANAW Translation factor GUF1, mitochondrial OS=Candida albicans (strain
WO-1) GN=GUF1 PE=3 SV=1
Length = 654
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 45 DSLLHLVDPPS-IDFRSTVSRS 65
D LLHLVD P +DFR+ VSRS
Sbjct: 123 DYLLHLVDTPGHVDFRAEVSRS 144
>sp|Q59P53|GUF1_CANAL Translation factor GUF1, mitochondrial OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=GUF1 PE=3 SV=1
Length = 654
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 45 DSLLHLVDPPS-IDFRSTVSRS 65
D LLHLVD P +DFR+ VSRS
Sbjct: 123 DYLLHLVDTPGHVDFRAEVSRS 144
>sp|P47384|LEPA_MYCGE Elongation factor 4 OS=Mycoplasma genitalium (strain ATCC 33530 /
G-37 / NCTC 10195) GN=lepA PE=3 SV=1
Length = 598
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 41 LDNIDSLLHLVDPPS-IDFRSTVSRSLCRLENV 72
+DN + L HL+D P +DF VSRSL E V
Sbjct: 67 VDNNNYLFHLIDTPGHVDFTYEVSRSLAACEGV 99
>sp|A1D5Z0|GUF1_NEOFI Translation factor guf1, mitochondrial OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=guf1 PE=3 SV=1
Length = 683
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 45 DSLLHLVDPPS-IDFRSTVSRS 65
D LLHLVD P +DFR+ VSRS
Sbjct: 132 DYLLHLVDTPGHVDFRAEVSRS 153
>sp|C8VPJ1|GUF1_EMENI Translation factor guf1, mitochondrial OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=guf1 PE=3 SV=1
Length = 662
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 45 DSLLHLVDPPS-IDFRSTVSRS 65
D LLHLVD P +DFR+ VSRS
Sbjct: 130 DYLLHLVDTPGHVDFRAEVSRS 151
>sp|A5DG70|GUF1_PICGU Translation factor GUF1, mitochondrial OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=GUF1 PE=3 SV=2
Length = 662
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 45 DSLLHLVDPPS-IDFRSTVSRS 65
D LLHLVD P +DFR+ VSRS
Sbjct: 130 DYLLHLVDTPGHVDFRAEVSRS 151
>sp|Q0CS42|GUF1_ASPTN Translation factor guf1, mitochondrial OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=guf1 PE=3 SV=1
Length = 665
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 45 DSLLHLVDPPS-IDFRSTVSRS 65
D LLHLVD P +DFR+ VSRS
Sbjct: 133 DYLLHLVDTPGHVDFRAEVSRS 154
>sp|B6H2S6|GUF1_PENCW Translation factor guf1, mitochondrial OS=Penicillium chrysogenum
(strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255)
GN=guf1 PE=3 SV=1
Length = 666
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 45 DSLLHLVDPPS-IDFRSTVSRS 65
D LLHLVD P +DFR+ VSRS
Sbjct: 134 DYLLHLVDTPGHVDFRAEVSRS 155
>sp|A5DWY7|GUF1_LODEL Translation factor GUF1, mitochondrial OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=GUF1 PE=3 SV=1
Length = 674
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 45 DSLLHLVDPPS-IDFRSTVSRS 65
D LLHLVD P +DFR+ VSRS
Sbjct: 143 DYLLHLVDTPGHVDFRAEVSRS 164
>sp|A1CLD7|GUF1_ASPCL Translation factor guf1, mitochondrial OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=guf1 PE=3 SV=1
Length = 664
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 45 DSLLHLVDPPS-IDFRSTVSRS 65
D LLHLVD P +DFR+ VSRS
Sbjct: 132 DYLLHLVDTPGHVDFRAEVSRS 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,992,891
Number of Sequences: 539616
Number of extensions: 1627674
Number of successful extensions: 4234
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 4205
Number of HSP's gapped (non-prelim): 89
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)