Query psy11519
Match_columns 150
No_of_seqs 82 out of 105
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 20:28:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3681|consensus 100.0 8.8E-51 1.9E-55 371.1 13.2 150 1-150 74-229 (835)
2 PF01044 Vinculin: Vinculin fa 100.0 9.8E-44 2.1E-48 335.6 11.5 150 1-150 72-232 (968)
3 PF01044 Vinculin: Vinculin fa 95.8 0.092 2E-06 51.1 10.8 141 4-144 555-706 (968)
4 PF08913 VBS: Vinculin Binding 90.3 5.3 0.00011 30.1 9.8 89 55-143 9-99 (125)
5 PRK10391 oriC-binding nucleoid 75.7 6.7 0.00015 26.9 4.3 43 62-104 3-51 (71)
6 PRK10945 gene expression modul 62.1 19 0.00042 24.8 4.3 45 61-105 7-56 (72)
7 KOG3681|consensus 56.8 41 0.00089 32.8 6.9 71 73-146 394-467 (835)
8 cd07639 BAR_ACAP1 The Bin/Amph 54.8 89 0.0019 25.3 7.7 61 55-119 88-149 (200)
9 PF14733 ACDC: AP2-coincident 49.9 35 0.00076 23.6 4.2 31 60-90 41-71 (91)
10 cd07595 BAR_RhoGAP_Rich-like T 44.9 1.8E+02 0.0039 24.0 9.6 62 75-136 120-191 (244)
11 cd07603 BAR_ACAPs The Bin/Amph 44.3 1.6E+02 0.0036 23.5 8.3 65 55-123 88-153 (200)
12 smart00307 ILWEQ I/LWEQ domain 41.8 1.9E+02 0.0041 23.5 13.0 123 3-136 12-146 (200)
13 PF08913 VBS: Vinculin Binding 41.5 1.5E+02 0.0032 22.2 7.2 50 77-126 67-117 (125)
14 KOG4515|consensus 40.5 1.7E+02 0.0036 24.0 7.1 59 55-128 118-176 (217)
15 PF09548 Spore_III_AB: Stage I 40.4 1.6E+02 0.0035 22.6 7.0 51 76-126 104-154 (170)
16 PF11464 Rbsn: Rabenosyn Rab b 38.0 98 0.0021 19.1 5.7 40 55-98 1-40 (42)
17 PF12753 Nro1: Nuclear pore co 34.6 2.1E+02 0.0045 25.8 7.5 79 55-135 75-160 (404)
18 cd07601 BAR_APPL The Bin/Amphi 30.5 3E+02 0.0065 22.4 9.1 119 3-124 23-160 (215)
19 PRK12714 flgK flagellar hook-a 30.2 1.4E+02 0.0031 28.0 6.0 88 15-118 112-206 (624)
20 PF13925 Katanin_con80: con80 27.5 2.5E+02 0.0054 21.5 6.1 53 78-130 93-146 (164)
21 COG1256 FlgK Flagellar hook-as 27.2 1.2E+02 0.0026 28.3 4.9 86 14-117 115-211 (552)
22 cd07637 BAR_ACAP3 The Bin/Amph 23.9 3.8E+02 0.0083 21.4 9.2 121 4-128 24-158 (200)
23 PF13748 ABC_membrane_3: ABC t 23.5 3.2E+02 0.0069 22.8 6.3 51 83-133 71-126 (237)
24 TIGR02492 flgK_ends flagellar 23.3 2.8E+02 0.006 23.5 6.1 88 15-118 112-209 (322)
25 PF05321 HHA: Haemolysin expre 23.2 1.4E+02 0.0031 19.6 3.4 36 69-104 3-43 (57)
26 KOG3251|consensus 22.9 4.4E+02 0.0094 21.7 9.0 74 55-133 8-88 (213)
27 KOG1991|consensus 22.7 3.9E+02 0.0085 26.9 7.6 51 2-54 581-632 (1010)
28 PRK06799 flgK flagellar hook-a 22.1 5.6E+02 0.012 22.7 8.1 88 14-117 116-210 (431)
29 cd07682 F-BAR_srGAP2 The F-BAR 21.9 2.5E+02 0.0054 23.9 5.4 33 109-141 118-151 (263)
30 COG4842 Uncharacterized protei 21.8 2.9E+02 0.0063 19.3 6.0 53 55-107 29-81 (97)
31 PF11014 DUF2852: Protein of u 21.7 1.3E+02 0.0027 22.6 3.3 30 55-84 83-112 (115)
32 PRK05683 flgK flagellar hook-a 20.8 4.3E+02 0.0092 25.2 7.3 87 15-118 112-208 (676)
33 cd00166 SAM Sterile alpha moti 20.6 2.1E+02 0.0045 17.1 5.5 55 60-119 5-62 (63)
34 PRK07191 flgK flagellar hook-a 20.2 3.2E+02 0.0069 24.4 6.1 88 14-118 111-208 (456)
35 PRK08307 stage III sporulation 20.1 2.3E+02 0.0049 22.0 4.6 65 62-126 90-155 (171)
No 1
>KOG3681|consensus
Probab=100.00 E-value=8.8e-51 Score=371.11 Aligned_cols=150 Identities=38% Similarity=0.524 Sum_probs=149.1
Q ss_pred ChHHHHHHHHHhHHHHHhhhhhhcCCCcchhccccccc--hhhHHHhHHHhhcChh----hHhhHhHHHHHHhhHhhcCC
Q psy11519 1 MNDQITSALELTISMSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDSLLHLVDPP----SIDFRSTVSRSLCRLENVTN 74 (150)
Q Consensus 1 m~~A~~~v~~aG~~m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtrlLllaD~~----il~~~~~v~~~l~~~~~~~s 74 (150)
||+||++|+++|+.|.+++++|.+||||+++|+.||+| +||||||||||||||+ ||++|++|+++|+++++++|
T Consensus 74 m~~A~~~V~~~~~~m~~aa~~~~~Dp~s~~~R~~~i~aaR~LLsavtrlLllaD~~dV~~ii~~~~~V~~~l~~le~~~t 153 (835)
T KOG3681|consen 74 MPAALEEVRKAGDLMKQAAREFDDDPCSVPKRGNLIRAARGLLSAVTRLLLLADMVDVKKIIRSCKKVLETLEVLENVNT 153 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999999999999999999999 9999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcCCCcHHHHhccccCC
Q psy11519 75 FTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETARQNRDTVF 150 (150)
Q Consensus 75 ~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~hp~~~~A~~nRd~v~ 150 (150)
|+||+++|++|||+|++|++.+++||+|||||.|||+|++||+.||+++|||||||||||+||+++.+++||||+|
T Consensus 154 ~~dlv~~~k~lg~~m~~l~~~~~~RqqeLk~~~~rd~laaar~~lk~~~p~L~task~~lrhp~~~~a~~NRd~v~ 229 (835)
T KOG3681|consen 154 MQDLVQIFKQLGPEMVKLAHMAGKRQQELKDPKHRDQLAAARAVLKKLAPMLLTASKTCLRHPNCESAKKNRDYVF 229 (835)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhHHHHHHHHHHHcCccHHHHHhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=100.00 E-value=9.8e-44 Score=335.56 Aligned_cols=150 Identities=40% Similarity=0.525 Sum_probs=146.8
Q ss_pred ChHHHHHHHHHhHHHHHhhhhhhcCCCcchhccccccc--hhhHHHhHHHhhcChh----hHhhHhHHHHHHhhHhhcCC
Q psy11519 1 MNDQITSALELTISMSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDSLLHLVDPP----SIDFRSTVSRSLCRLENVTN 74 (150)
Q Consensus 1 m~~A~~~v~~aG~~m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtrlLllaD~~----il~~~~~v~~~l~~~~~~~s 74 (150)
||+||++|+.+|+.|..+++.|.+|||++++|+.||+| +||++||||||+||++ ||+.+++|+++|+++++++|
T Consensus 72 M~~A~~~v~~ag~~l~~aa~~l~~dP~s~~~R~~lv~aar~lL~~vt~lLllaD~~~Vr~Ii~~~~~v~~~l~~~e~~~s 151 (968)
T PF01044_consen 72 MPEACEEVRDAGKNLLQAAQELRDDPCSSPKRKKLVRAARGLLSGVTRLLLLADMADVRKIIRACKKVLDYLERLESAES 151 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGCT-SS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999 9999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcC---C--CcHHHHhccccC
Q psy11519 75 FTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRH---P--DSETARQNRDTV 149 (150)
Q Consensus 75 ~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~h---p--~~~~A~~nRd~v 149 (150)
++||+++|++||++|++|++++++||+||+||.||++|.+||++||+++||||||||+|++| | ++++|++||||+
T Consensus 152 ~~el~~~~~~f~~~~~~l~~~~~~Rq~eL~~~~~r~~l~~a~~~Lk~~~p~L~ts~k~~l~h~~~p~~~~~~a~~nRd~v 231 (968)
T PF01044_consen 152 MEELVQAFKDFGPEMVELAKLTGRRQQELKDPEHRDQLAAARAVLKKCSPMLLTSSKTYLRHPNDPGKEVEEARENRDYV 231 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTSSTHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 9 999999999998
Q ss_pred C
Q psy11519 150 F 150 (150)
Q Consensus 150 ~ 150 (150)
|
T Consensus 232 ~ 232 (968)
T PF01044_consen 232 F 232 (968)
T ss_dssp H
T ss_pred c
Confidence 5
No 3
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=95.81 E-value=0.092 Score=51.11 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=110.1
Q ss_pred HHHHHHHHhHHHHHhhhhhhcCCCcchhccccccc--hhhHHHhHHHhhcChh-----hHhh-HhHHHHHHhh---Hhhc
Q psy11519 4 QITSALELTISMSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDSLLHLVDPP-----SIDF-RSTVSRSLCR---LENV 72 (150)
Q Consensus 4 A~~~v~~aG~~m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtrlLllaD~~-----il~~-~~~v~~~l~~---~~~~ 72 (150)
+...++.-+.-+..|++.+..+|.+...+++|=-= ..-..|.+|.-+.|.+ .|.. ...+.+.+.. .-..
T Consensus 555 aa~~l~~L~pqvi~Aa~~l~~~P~sk~A~e~le~~~~~W~~~v~~L~~~vd~i~d~~eFl~vSe~~i~~d~~~c~~Al~~ 634 (968)
T PF01044_consen 555 AAEQLEKLTPQVINAARILAANPSSKAAKEHLEVFREAWEDAVEDLTEAVDEITDVDEFLAVSEEHILKDVDKCEKALRS 634 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677777788899999999998887777555 7778888888888877 2221 2333333333 3356
Q ss_pred CChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcCCCcHHHHh
Q psy11519 73 TNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETARQ 144 (150)
Q Consensus 73 ~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~hp~~~~A~~ 144 (150)
++.+.|+..-..+......+...+.+-..--.||..|..+..+-..|++.+|-++..-|.+..+|....++.
T Consensus 635 ~d~~~~~~~a~~I~~ra~rV~~va~~e~dn~eDp~y~~~v~~a~~~L~~~i~~~v~~ak~va~n~~d~~a~~ 706 (968)
T PF01044_consen 635 GDPQELDRAASSIAGRANRVIQVAKREMDNSEDPIYRNRVLEAIDQLEQAIPPMVAAAKEVATNPLDKNAQQ 706 (968)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCcchhh
Confidence 899999999999999999999999988888899999999999999999999999999999988876655543
No 4
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions. Talin, in turn, links integrins to the actin cytoskeleton. The consensus sequence for Vinculin binding sites is LxxAAxxVAxxVxxLIxxA, with a secondary structure prediction of four amphipathic helices. The hydrophobic residues that define the VBS are themselves 'masked' and are buried in the core of a series of helical bundles that make up the talin rod []. ; PDB: 2L10_A 2KVP_A 2B0H_A 1RKC_B 1XWJ_B.
Probab=90.33 E-value=5.3 Score=30.07 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=73.0
Q ss_pred hHhhHhHHHHHHhhHh--hcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhh
Q psy11519 55 SIDFRSTVSRSLCRLE--NVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKT 132 (150)
Q Consensus 55 il~~~~~v~~~l~~~~--~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt 132 (150)
|++.++.+..+-..|. +..+++||...=++|+.+-.+|+..+..=..-+.+++-..+|..+-..|=..+.=|+.+.+.
T Consensus 9 mv~~ak~ia~~a~emv~ks~~~p~eL~~la~~lt~~y~~La~~~~~aaat~~~~ev~~~i~~~vq~LG~sc~~Lv~aag~ 88 (125)
T PF08913_consen 9 MVEAAKEIARTAQEMVTKSRTNPEELGTLANDLTHDYSQLAQDAKGAAATTPSAEVQNRIKSAVQDLGMSCIELVQAAGA 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 6677777777776665 45788899999999999999999988887888889999999999999999999999999999
Q ss_pred hhcCCCcHHHH
Q psy11519 133 CLRHPDSETAR 143 (150)
Q Consensus 133 ~l~hp~~~~A~ 143 (150)
+=-||+.+.++
T Consensus 89 ~~~~P~d~~~k 99 (125)
T PF08913_consen 89 VQSNPSDPYAK 99 (125)
T ss_dssp HHH-TT-HHHH
T ss_pred CCCCCCchhHH
Confidence 98899877654
No 5
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=75.68 E-value=6.7 Score=26.92 Aligned_cols=43 Identities=16% Similarity=0.399 Sum_probs=36.2
Q ss_pred HHHHHhhHhhcCChHHHHHHHHHHh------HHHHHHHHHHhhhhccCc
Q psy11519 62 VSRSLCRLENVTNFTEFVKAFSQFG------GEMVELAHVTGERGGDLK 104 (150)
Q Consensus 62 v~~~l~~~~~~~s~~el~~~f~~f~------~~m~~l~~~~~~Rq~dLk 104 (150)
..++|-+++.++|.+-|.+.|.... .+++.+...++.|-.||+
T Consensus 3 k~eyLlkfRkcss~eTLEkv~e~~~y~L~~~~e~~~f~~AaDHR~AEL~ 51 (71)
T PRK10391 3 VQDYLLKFRKISSLESLEKLFDHLNYTLTDDQEIINMYRAADHRRAELV 51 (71)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998763 677788888888888775
No 6
>PRK10945 gene expression modulator; Provisional
Probab=62.14 E-value=19 Score=24.79 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=37.2
Q ss_pred HHHHHHhhHhhcCChHHHHHHHHHH-----hHHHHHHHHHHhhhhccCcc
Q psy11519 61 TVSRSLCRLENVTNFTEFVKAFSQF-----GGEMVELAHVTGERGGDLKD 105 (150)
Q Consensus 61 ~v~~~l~~~~~~~s~~el~~~f~~f-----~~~m~~l~~~~~~Rq~dLk~ 105 (150)
...|+|-+++..+|.+-|.+.|... +.+++.+...++.|-.||+.
T Consensus 7 tk~dyL~~fRrcss~eTLEkvie~~~~~L~~~E~~~f~~AaDHR~AEL~~ 56 (72)
T PRK10945 7 TKTDYLMRLRRCQTIDTLERVIEKNKYELSDDELAVFYSAADHRLAELTM 56 (72)
T ss_pred cHHHHHHHHHhcCcHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHh
Confidence 3489999999999999999988765 35678888889988888764
No 7
>KOG3681|consensus
Probab=56.84 E-value=41 Score=32.79 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=53.7
Q ss_pred CChHHHHH---HHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcCCCcHHHHhcc
Q psy11519 73 TNFTEFVK---AFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETARQNR 146 (150)
Q Consensus 73 ~s~~el~~---~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~hp~~~~A~~nR 146 (150)
++.+++.+ .|+.+...|++.++++..=. .+..-=+.+..+-..|+..+|..+.+-.+-.+||++-.|++|=
T Consensus 394 G~ee~~~eya~~f~eha~~lvevarl~~~is---~n~~~v~~v~~sa~ql~~L~Pqvi~Aa~~l~~~P~sk~A~enm 467 (835)
T KOG3681|consen 394 GNEEEVKEYAANFREHANKLVEVARLACSIS---NNEEGVKIVQHSAAQLESLCPQVINAARILAARPGSKAAQENM 467 (835)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccchhHHHHHHHHHHHhcchHHHHHHHHHHhCccchhHHHHH
Confidence 55555555 45566666677676665433 5556666777788899999999999999999999999999874
No 8
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=54.81 E-value=89 Score=25.28 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=37.0
Q ss_pred hHhhHhH-HHHHHhhHhhcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHH
Q psy11519 55 SIDFRST-VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVL 119 (150)
Q Consensus 55 il~~~~~-v~~~l~~~~~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~L 119 (150)
|+..+.. +.+.|..++ +....|.+...++-..+...++.-.++..++ +.-.++|..+|..-
T Consensus 88 l~~~L~~F~k~dl~~vK--e~kK~FdK~s~~~d~al~K~~~~~k~k~~e~--~Ea~~~l~~~R~~F 149 (200)
T cd07639 88 FKQQLQLLVKEDLRGFR--DARKEFERGAESLEAALQHNAETPRRKAQEV--EEAAAALLGARATF 149 (200)
T ss_pred HHHHHHHHHHhhhHHHH--HHhhhHhhcchhHHHHHHHHhhccccchHHH--HHHHHHHHHHHHHH
Confidence 5555444 555666655 5666788888888888888877665545544 33334555555444
No 9
>PF14733 ACDC: AP2-coincident C-terminal
Probab=49.89 E-value=35 Score=23.65 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=27.8
Q ss_pred hHHHHHHhhHhhcCChHHHHHHHHHHhHHHH
Q psy11519 60 STVSRSLCRLENVTNFTEFVKAFSQFGGEMV 90 (150)
Q Consensus 60 ~~v~~~l~~~~~~~s~~el~~~f~~f~~~m~ 90 (150)
..+...+..++++.+..++..+++-|+.++.
T Consensus 41 ~~i~~H~~~V~~a~~~~~L~pyl~lF~~cI~ 71 (91)
T PF14733_consen 41 RVIDYHIRYVNSAKNIEELQPYLALFSNCIK 71 (91)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 4577788999999999999999999999984
No 10
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=44.88 E-value=1.8e+02 Score=24.04 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhcc----------CccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcC
Q psy11519 75 FTEFVKAFSQFGGEMVELAHVTGERGGD----------LKDERRRAQMSAARQVLERSTMLLLTSSKTCLRH 136 (150)
Q Consensus 75 ~~el~~~f~~f~~~m~~l~~~~~~Rq~d----------Lk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~h 136 (150)
+.+..+.=+.+...-..++..-.+-++- =|-+.-+++|..|..-+..+.=.+.+.|..++.+
T Consensus 120 ik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~ 191 (244)
T cd07595 120 IPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAK 191 (244)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444455555554554443333322 2234569999999999999999999999999887
No 11
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.27 E-value=1.6e+02 Score=23.47 Aligned_cols=65 Identities=11% Similarity=0.195 Sum_probs=42.0
Q ss_pred hHhhHhH-HHHHHhhHhhcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhh
Q psy11519 55 SIDFRST-VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERST 123 (150)
Q Consensus 55 il~~~~~-v~~~l~~~~~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~ 123 (150)
|+..+.. +.+.|..++ +....|.+..++|-..+.....+...|..+++... .+|..+|..-...+
T Consensus 88 i~~pL~~F~k~dL~~vK--E~kk~Fdk~s~~yd~al~k~~~~~K~K~~~~~Ea~--~~L~~~Rk~f~~~s 153 (200)
T cd07603 88 VSTQLQNFVKEDIKKVK--ESKKHFEKISDDLDNALVKNAQAPRSKPQEAEEAT--NILTATRSCFRHTA 153 (200)
T ss_pred HHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH--HHHHHHHHHHHHHH
Confidence 5555443 556666666 67777888888888888887777777765655433 45555555544433
No 12
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=41.76 E-value=1.9e+02 Score=23.48 Aligned_cols=123 Identities=10% Similarity=0.085 Sum_probs=81.3
Q ss_pred HHHHHHHHHhHHHHHhhhhh----hcC-----CCcchhccccccc-hhhHHHhHHHhhcChh--hHhhHhHHHHHHhhHh
Q psy11519 3 DQITSALELTISMSLKMCSL----STH-----SRPAVNRCRLNRP-YCLDNIDSLLHLVDPP--SIDFRSTVSRSLCRLE 70 (150)
Q Consensus 3 ~A~~~v~~aG~~m~~aa~~f----~~d-----p~s~~~R~~lvra-~lLs~vtrlLllaD~~--il~~~~~v~~~l~~~~ 70 (150)
+||..+-.+-..|..++... +.. +.....+.+---+ ||+++.-. +++-+ |++..+.+. .
T Consensus 12 ~aa~~i~~a~~~Lv~aA~~~Q~Eiv~~gr~~~~~~~fY~kn~~w~EgLisAAka---V~~a~~~Lv~aA~~~~------~ 82 (200)
T smart00307 12 EAAKAITKAIAALVKAATNAQREIVAQGRGGASPGEFYKKNSRWTEGLISAAKA---VAAATNVLVEAADGVV------T 82 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCcccHHHHHHHHH---HHHHHHHHHHHHHHHh------c
Confidence 46666666666666665433 221 1111112222233 77776532 33333 666666655 3
Q ss_pred hcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcC
Q psy11519 71 NVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRH 136 (150)
Q Consensus 71 ~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~h 136 (150)
.-.+.++|+...+..+.....|-...+ -+-=.|+..+++|..|-..+...+--|.-+.|.+...
T Consensus 83 g~~~~E~LI~aAk~VAasTaQLVaAsr--vka~~~S~~~~~L~~Ask~V~~At~~LVaaak~~~~~ 146 (200)
T smart00307 83 GKGSEEELIVAAKEVAASTAQLVAASR--VKADKDSQAQDRLQAASKAVTNATANLVAAVKSGMIF 146 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHh--hccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999984433 4434667788999999999999999999999998654
No 13
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions. Talin, in turn, links integrins to the actin cytoskeleton. The consensus sequence for Vinculin binding sites is LxxAAxxVAxxVxxLIxxA, with a secondary structure prediction of four amphipathic helices. The hydrophobic residues that define the VBS are themselves 'masked' and are buried in the core of a series of helical bundles that make up the talin rod []. ; PDB: 2L10_A 2KVP_A 2B0H_A 1RKC_B 1XWJ_B.
Probab=41.49 E-value=1.5e+02 Score=22.20 Aligned_cols=50 Identities=26% Similarity=0.366 Sum_probs=39.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhccCccHH-HHHHHHHHHHHHHhhhHHH
Q psy11519 77 EFVKAFSQFGGEMVELAHVTGERGGDLKDER-RRAQMSAARQVLERSTMLL 126 (150)
Q Consensus 77 el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~-~rd~l~aAr~~Lk~~~~~L 126 (150)
.+....+++|....+|-..++..|.+-.|+. +|+--.+||.+-++-.-+|
T Consensus 67 ~i~~~vq~LG~sc~~Lv~aag~~~~~P~d~~~k~~L~~~AR~v~EkVs~Vl 117 (125)
T PF08913_consen 67 RIKSAVQDLGMSCIELVQAAGAVQSNPSDPYAKRELADAARAVSEKVSQVL 117 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999997 6666667888777655544
No 14
>KOG4515|consensus
Probab=40.51 E-value=1.7e+02 Score=23.99 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=39.3
Q ss_pred hHhhHhHHHHHHhhHhhcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHH
Q psy11519 55 SIDFRSTVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLT 128 (150)
Q Consensus 55 il~~~~~v~~~l~~~~~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~t 128 (150)
|+.-|+.|...+..+- +-+.+-.+.|..|...+..+..+ -++|-.....|..++|||=+
T Consensus 118 lv~r~K~v~~s~~tLf--~~~~~~qk~ya~yaeq~~k~n~l-------------s~~l~riq~~l~~~Vp~le~ 176 (217)
T KOG4515|consen 118 LVARCKSVEASMITLF--EETRAHQKQYAGYAEQLSKLNQL-------------SDDLCRIQIILEDIVPMLET 176 (217)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhHHHHHH
Confidence 7777777777766552 22444555666666666555544 35677788899999999865
No 15
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=40.36 E-value=1.6e+02 Score=22.61 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHH
Q psy11519 76 TEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLL 126 (150)
Q Consensus 76 ~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L 126 (150)
.|=.+.+.+||..+...+..--.++-+|.-+.-+.++..|++.-++..-|.
T Consensus 104 ~~d~e~L~~lg~~LG~~D~~~Q~k~i~l~~~~L~~~~~~a~~~~~~~~Kly 154 (170)
T PF09548_consen 104 KEDKEILLELGKSLGYSDREMQEKHIELYLEQLEQQLEEAREEAKKKGKLY 154 (170)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 345677889999999999999999999999999999999999988876653
No 16
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=37.96 E-value=98 Score=19.09 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=28.4
Q ss_pred hHhhHhHHHHHHhhHhhcCChHHHHHHHHHHhHHHHHHHHHHhh
Q psy11519 55 SIDFRSTVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGE 98 (150)
Q Consensus 55 il~~~~~v~~~l~~~~~~~s~~el~~~f~~f~~~m~~l~~~~~~ 98 (150)
+++....+..++...+.+..++|+...=. .+.+|.+...+
T Consensus 1 LleQi~~I~~~I~qAk~~~r~dEV~~L~~----NL~EL~~e~~~ 40 (42)
T PF11464_consen 1 LLEQINIIESYIKQAKAARRFDEVATLEE----NLRELQDEIDE 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHH----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHH----HHHHHHHHHHh
Confidence 57788999999999999999999765433 34455444433
No 17
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=34.62 E-value=2.1e+02 Score=25.82 Aligned_cols=79 Identities=24% Similarity=0.234 Sum_probs=53.6
Q ss_pred hHhhHhHHHHHHhhHhhcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHh-------hhHHHH
Q psy11519 55 SIDFRSTVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER-------STMLLL 127 (150)
Q Consensus 55 il~~~~~v~~~l~~~~~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~-------~~~~L~ 127 (150)
||+.||++++--+.-+......+ .||..|+-+|.+|+..-..=..+.+++.-.+-.-+|.+.++- +..+++
T Consensus 75 iIHECDRLLR~~e~~~~~~~Lp~--~FhaIYalALsELa~f~~~~~~~~~~~~v~efFdaAlER~e~Gl~~~p~s~~L~l 152 (404)
T PF12753_consen 75 IIHECDRLLRNSEEEEKKKELPD--RFHAIYALALSELAIFKAEEEEEKKREKVSEFFDAALERVELGLEKFPDSILLLL 152 (404)
T ss_dssp HHHHHHHHHHHSS-GG---GS-H--HHHHHHHHHHHHHHHTHHHHGGGS-TT--HHHHHHHHHHHHHGGSSS--H-HHHH
T ss_pred chHHHHHHHHccccccccccccH--HHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHHHHHHhhhhcCCCchhHHH
Confidence 88999888765422221112222 678999999999999988888888888888888888888873 346777
Q ss_pred Hhhhhhhc
Q psy11519 128 TSSKTCLR 135 (150)
Q Consensus 128 ts~kt~l~ 135 (150)
+-+|..+.
T Consensus 153 ~~skIll~ 160 (404)
T PF12753_consen 153 AKSKILLQ 160 (404)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777653
No 18
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.50 E-value=3e+02 Score=22.44 Aligned_cols=119 Identities=13% Similarity=0.103 Sum_probs=69.7
Q ss_pred HHHHHHHHHhHHHHHhhhhhhc-------C--CCcchhccccccc-----hhhHHHhHH-HhhcChh---hHhhHhHHH-
Q psy11519 3 DQITSALELTISMSLKMCSLST-------H--SRPAVNRCRLNRP-----YCLDNIDSL-LHLVDPP---SIDFRSTVS- 63 (150)
Q Consensus 3 ~A~~~v~~aG~~m~~aa~~f~~-------d--p~s~~~R~~lvra-----~lLs~vtrl-LllaD~~---il~~~~~v~- 63 (150)
..|..+.++|..+..|.+.|+. . ++. .+-..++.+ ..|+.+... =+|.|.+ |+..+....
T Consensus 23 K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~-~dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~~l~~pL~~F~k 101 (215)
T cd07601 23 QACKRVYDAQNELKSATQALSKKLGEYEKQKFELG-RDDEILVSTLKQFSKVVDELSTMHSTLSSQLADTVLHPISQFME 101 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888665532 2 222 233333322 222222211 1334444 555555544
Q ss_pred HHHhhHhhcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhH
Q psy11519 64 RSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTM 124 (150)
Q Consensus 64 ~~l~~~~~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~ 124 (150)
+.|..++ +....|.+...++-..++...++..+|.++-.-..--++|..+|..-...+.
T Consensus 102 ~Dl~~vK--e~kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea~~~l~~~R~~F~~~~l 160 (215)
T cd07601 102 SDLAEIM--TLKELFKAASNDHDGVLSKYSRLSKKRENTKVKIEVNDEVYACRKKQHQTAM 160 (215)
T ss_pred HHhHHHH--HHHHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777666 6677789999999999999999998886543322444556666655544443
No 19
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=30.23 E-value=1.4e+02 Score=27.96 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=49.6
Q ss_pred HHHhhhhhhcCCCcchhccccccc-hhhHHHhHHHhhcChhhHhhHhHHHHHHhhHhhcCC--hHHHHHHHHHHhHHHHH
Q psy11519 15 MSLKMCSLSTHSRPAVNRCRLNRP-YCLDNIDSLLHLVDPPSIDFRSTVSRSLCRLENVTN--FTEFVKAFSQFGGEMVE 91 (150)
Q Consensus 15 m~~aa~~f~~dp~s~~~R~~lvra-~lLs~vtrlLllaD~~il~~~~~v~~~l~~~~~~~s--~~el~~~f~~f~~~m~~ 91 (150)
|-.+-+.+..+|.+...|..++.. .- +....+.+...|..+++--+ ...-+.....+...+.+
T Consensus 112 ff~alq~la~~P~~~~~R~~vl~~A~~--------------La~~f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~ 177 (624)
T PRK12714 112 FFDSTSALSSNASSTAERQSMLDSGNS--------------LATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAK 177 (624)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444557778899999999988877 22 22333344444443333222 22345555666666666
Q ss_pred HHHHHhhh----hccCccHHHHHHHHHHHHH
Q psy11519 92 LAHVTGER----GGDLKDERRRAQMSAARQV 118 (150)
Q Consensus 92 l~~~~~~R----q~dLk~~~~rd~l~aAr~~ 118 (150)
|+.....- .+||. ++||++..-...
T Consensus 178 LN~~I~~~~~~~~ndLl--DqRD~ll~eLS~ 206 (624)
T PRK12714 178 INGTIGSSAQNAAPDLL--DQRDALVSKLVG 206 (624)
T ss_pred HHHHHHHhcCCCchhhH--HHHHHHHHHHHh
Confidence 66666432 34554 466776655543
No 20
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=27.49 E-value=2.5e+02 Score=21.50 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=42.9
Q ss_pred HHHHHHHHhHHHHHHHHHH-hhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhh
Q psy11519 78 FVKAFSQFGGEMVELAHVT-GERGGDLKDERRRAQMSAARQVLERSTMLLLTSS 130 (150)
Q Consensus 78 l~~~f~~f~~~m~~l~~~~-~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~ 130 (150)
|...++.||+.+.+..... ....-|+..+.+.++-..+-..|++..+++..=.
T Consensus 93 L~~i~~~f~~~I~~~~~~~~~~~gVDl~~EeR~~kc~~c~~~L~~i~~~l~~l~ 146 (164)
T PF13925_consen 93 LRSILKKFGPVIRSNLSAPSPSIGVDLSAEERMEKCQECYQQLRKIVQILKSLA 146 (164)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999998887754 4556699999999999999999998888776543
No 21
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=27.19 E-value=1.2e+02 Score=28.26 Aligned_cols=86 Identities=15% Similarity=0.258 Sum_probs=48.4
Q ss_pred HHHHhhhhhhcCCCcchhccccccc--hhhHHHhHHHhhcChhhHhhHhHHHHHHhhHh---------hcCChHHHHHHH
Q psy11519 14 SMSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDSLLHLVDPPSIDFRSTVSRSLCRLE---------NVTNFTEFVKAF 82 (150)
Q Consensus 14 ~m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtrlLllaD~~il~~~~~v~~~l~~~~---------~~~s~~el~~~f 82 (150)
.+-.+-+++..+|.+...|+.++.. .|..++ +..-..|.+++ .+....+|.+.+
T Consensus 115 ~ff~s~q~la~~P~~~a~r~~vl~~a~~l~~~i---------------n~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qI 179 (552)
T COG1256 115 DFFNSLQELASNPSDTAARQAVLSKAQTLVNQI---------------NNTYEQLTDLRKDINAEIAATVDEVNSLLKQI 179 (552)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455667889999999999998877 443332 22222222222 122223344444
Q ss_pred HHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHH
Q psy11519 83 SQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQ 117 (150)
Q Consensus 83 ~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~ 117 (150)
.++...+... ...+..-+||.| +||+|..-..
T Consensus 180 a~lN~qI~~~-~~~g~~~NdLlD--qRD~Lv~eLs 211 (552)
T COG1256 180 ADLNKQIRKV-KAAGNDPNDLLD--QRDQLVDELS 211 (552)
T ss_pred HHHHHHHHHh-ccCCCCchhHHH--HHHHHHHHHH
Confidence 4555555555 445666777764 6777754433
No 22
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.93 E-value=3.8e+02 Score=21.45 Aligned_cols=121 Identities=7% Similarity=0.056 Sum_probs=60.6
Q ss_pred HHHHHHHHhHHHHHhhhhhhc-----------CCCcchhccccccc--hhhHHHhHHHhhcChhhHhhHhH-HHHHHhhH
Q psy11519 4 QITSALELTISMSLKMCSLST-----------HSRPAVNRCRLNRP--YCLDNIDSLLHLVDPPSIDFRST-VSRSLCRL 69 (150)
Q Consensus 4 A~~~v~~aG~~m~~aa~~f~~-----------dp~s~~~R~~lvra--~lLs~vtrlLllaD~~il~~~~~-v~~~l~~~ 69 (150)
.|....++|+....+.+.|.. ||.....=.+-..+ .+...-+.++-=++..|+..+.. +.+.|..+
T Consensus 24 ~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~dL~~~ 103 (200)
T cd07637 24 LCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKEDVRKF 103 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 567777778888877766654 33211111111111 22222222222222224444443 44455544
Q ss_pred hhcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHH
Q psy11519 70 ENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLT 128 (150)
Q Consensus 70 ~~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~t 128 (150)
+ +....|.+.-++|-..+...++.-.+|..++.. -..+|-.+|..-.+.+.=++.
T Consensus 104 K--E~rK~Fdk~se~yd~al~k~~~~k~kk~~~l~E--a~~~L~~~Rk~f~~asLdyv~ 158 (200)
T cd07637 104 K--ETKKQFDKVREDLEIALVKNAQAPRHKPHEVEE--ATSTLTITRKCFRHLALDYVL 158 (200)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4 455556666677777777755555555555533 246666666665555543333
No 23
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=23.48 E-value=3.2e+02 Score=22.84 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=39.7
Q ss_pred HHHhHHHHHHHHH--HhhhhccCccHHHHHHHHHHHHHH---HhhhHHHHHhhhhh
Q psy11519 83 SQFGGEMVELAHV--TGERGGDLKDERRRAQMSAARQVL---ERSTMLLLTSSKTC 133 (150)
Q Consensus 83 ~~f~~~m~~l~~~--~~~Rq~dLk~~~~rd~l~aAr~~L---k~~~~~L~ts~kt~ 133 (150)
+.|+.--.+++.. ...|++.+.+..--..+.-+|+.. +++.|.|+||.=..
T Consensus 71 Rvf~rIy~~la~~vi~~qr~~~~~~S~i~ARv~lsRE~VdFfE~~lP~lits~vsi 126 (237)
T PF13748_consen 71 RVFSRIYAELAVPVILSQRQQGLSVSTIAARVALSREFVDFFEQHLPTLITSVVSI 126 (237)
T ss_pred HHHHHHHHHHhHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455555556666 789999999999999999999864 69999999986443
No 24
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=23.26 E-value=2.8e+02 Score=23.49 Aligned_cols=88 Identities=11% Similarity=0.058 Sum_probs=48.8
Q ss_pred HHHhhhhhhcCCCcchhccccccc-hhhHHHhHHHhhcChhhHhhHhHHHHHHhhHhhc--CChHHHHHHHHHHhHHHHH
Q psy11519 15 MSLKMCSLSTHSRPAVNRCRLNRP-YCLDNIDSLLHLVDPPSIDFRSTVSRSLCRLENV--TNFTEFVKAFSQFGGEMVE 91 (150)
Q Consensus 15 m~~aa~~f~~dp~s~~~R~~lvra-~lLs~vtrlLllaD~~il~~~~~v~~~l~~~~~~--~s~~el~~~f~~f~~~m~~ 91 (150)
+-.+-+.+..+|.+...|..++.+ .- +...++...+.|..++.- .....-+.....+...+.+
T Consensus 112 ff~a~~~ls~~P~~~~~r~~vl~~a~~--------------l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~ 177 (322)
T TIGR02492 112 FFNALQELAKNPDSEALRQAVLESAQA--------------LANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIAS 177 (322)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778899999988888776 22 233334444444433332 2233455556666666666
Q ss_pred HHHHHhhhh-------ccCccHHHHHHHHHHHHH
Q psy11519 92 LAHVTGERG-------GDLKDERRRAQMSAARQV 118 (150)
Q Consensus 92 l~~~~~~Rq-------~dLk~~~~rd~l~aAr~~ 118 (150)
|+.....-. +||. ++||++..-.+.
T Consensus 178 lN~~I~~~~~~~g~~~n~L~--DqRD~ll~~LS~ 209 (322)
T TIGR02492 178 LNKEIQQVEAKSGQDANDLL--DQRDLLLKELSQ 209 (322)
T ss_pred HHHHHHHHhccCCCCchHhH--HHHHHHHHHHHh
Confidence 666665432 3554 456666554443
No 25
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=23.21 E-value=1.4e+02 Score=19.62 Aligned_cols=36 Identities=11% Similarity=0.262 Sum_probs=23.0
Q ss_pred HhhcCChHHHHHHHHHH-----hHHHHHHHHHHhhhhccCc
Q psy11519 69 LENVTNFTEFVKAFSQF-----GGEMVELAHVTGERGGDLK 104 (150)
Q Consensus 69 ~~~~~s~~el~~~f~~f-----~~~m~~l~~~~~~Rq~dLk 104 (150)
++..+|.+.|.+.|... +.+++.+...++.|-.||+
T Consensus 3 ~Rrcss~dtLEkv~e~~~~~L~~~e~~~f~~AaDHR~AEL~ 43 (57)
T PF05321_consen 3 FRRCSSLDTLEKVIEHNRYKLTDDELEAFNSAADHRRAELT 43 (57)
T ss_dssp HHTSS-HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHhhHHHHHHHhhCcCCHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655443 4567778888888877764
No 26
>KOG3251|consensus
Probab=22.86 E-value=4.4e+02 Score=21.74 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=48.3
Q ss_pred hHhhHhHHHHHHhhHhhcCChHHHHHHHHHHhHHHH-------HHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHH
Q psy11519 55 SIDFRSTVSRSLCRLENVTNFTEFVKAFSQFGGEMV-------ELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLL 127 (150)
Q Consensus 55 il~~~~~v~~~l~~~~~~~s~~el~~~f~~f~~~m~-------~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ 127 (150)
....++++..+|.++|...+-+|....+......+. .+...+++ +--++++.+.+. .+.|+-..--|-
T Consensus 8 t~~~~~k~q~~l~rlE~~~~~~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~---epp~~rq~~rlr--~dQl~~d~~~l~ 82 (213)
T KOG3251|consen 8 TNRQLDKLQRGLIRLERTIKTQEVSAVENSIQRSIDQYASRCQRLDVLVSK---EPPKSRQAARLR--VDQLLEDVEHLQ 82 (213)
T ss_pred HHHHHHHHHHHHHHHHccccccchHHHHHHHHHhHHHHHHHHHHHHhHhhc---CCCCcHHHHHHH--HHHHHHHHHHHH
Confidence 456788999999999999985555444444444444 44444443 222344444444 888888888888
Q ss_pred Hhhhhh
Q psy11519 128 TSSKTC 133 (150)
Q Consensus 128 ts~kt~ 133 (150)
++.+++
T Consensus 83 ~~l~~~ 88 (213)
T KOG3251|consen 83 TSLRTS 88 (213)
T ss_pred HHHHHH
Confidence 888887
No 27
>KOG1991|consensus
Probab=22.66 E-value=3.9e+02 Score=26.95 Aligned_cols=51 Identities=8% Similarity=0.033 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhHHHHHhhhhhhcCCCcchhccccccc-hhhHHHhHHHhhcChh
Q psy11519 2 NDQITSALELTISMSLKMCSLSTHSRPAVNRCRLNRP-YCLDNIDSLLHLVDPP 54 (150)
Q Consensus 2 ~~A~~~v~~aG~~m~~aa~~f~~dp~s~~~R~~lvra-~lLs~vtrlLllaD~~ 54 (150)
|=|.+-++.-.+.+.+-.+. .++.+...-.+-+.| |+|..++-+|+-.+..
T Consensus 581 PfA~eL~q~La~~F~k~l~~--~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~ 632 (1010)
T KOG1991|consen 581 PFAVELCQNLAETFLKVLQT--SEDEDESDDDKAIAASGILRTISTILLSLENH 632 (1010)
T ss_pred hhHHHHHHHHHHHHHHHHhc--cCCCCccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44555555555555555554 456666667777888 9999999999988877
No 28
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.11 E-value=5.6e+02 Score=22.74 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=45.9
Q ss_pred HHHHhhhhhhcCCCcchhccccccc-hhhHHHhHHHhhcChhhHhhHhHHHHHHhhHhhc--CChHHHHHHHHHHhHHHH
Q psy11519 14 SMSLKMCSLSTHSRPAVNRCRLNRP-YCLDNIDSLLHLVDPPSIDFRSTVSRSLCRLENV--TNFTEFVKAFSQFGGEMV 90 (150)
Q Consensus 14 ~m~~aa~~f~~dp~s~~~R~~lvra-~lLs~vtrlLllaD~~il~~~~~v~~~l~~~~~~--~s~~el~~~f~~f~~~m~ 90 (150)
.|-.+-+.+..+|.+...|..++.. .- +...++.+...|..++.- .....-+.....+...+.
T Consensus 116 ~ff~a~~~ls~~P~~~~~r~~vl~~a~~--------------l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia 181 (431)
T PRK06799 116 GFFNAFREVAKNPEQANYYDTLISETGK--------------FTSQLNRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLA 181 (431)
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556778899999988888766 22 233334444444433321 222334444555555555
Q ss_pred HHHHHHhhh----hccCccHHHHHHHHHHHH
Q psy11519 91 ELAHVTGER----GGDLKDERRRAQMSAARQ 117 (150)
Q Consensus 91 ~l~~~~~~R----q~dLk~~~~rd~l~aAr~ 117 (150)
+|+....+- .+||. ++||++..-.+
T Consensus 182 ~LN~~I~~~~~~~~ndL~--DqRD~ll~eLS 210 (431)
T PRK06799 182 EANKKIGQAGTQVPNQLL--DERDRILTEMS 210 (431)
T ss_pred HHHHHHHHcCCCCchhhH--HHHHHHHHHHH
Confidence 555555432 22443 45666654443
No 29
>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.86 E-value=2.5e+02 Score=23.88 Aligned_cols=33 Identities=21% Similarity=0.097 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhh-hcCCCcHH
Q psy11519 109 RAQMSAARQVLERSTMLLLTSSKTC-LRHPDSET 141 (150)
Q Consensus 109 rd~l~aAr~~Lk~~~~~L~ts~kt~-l~hp~~~~ 141 (150)
|+......+-|=+-..=|+|+|||| +-|-++..
T Consensus 118 KEi~~q~~eeLlkV~~ELqt~mktYh~y~~e~~~ 151 (263)
T cd07682 118 KEVGLQLQEDLMKVLNELYTVMKTYHMYNADSIS 151 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777778888899999999 44444433
No 30
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.79 E-value=2.9e+02 Score=19.29 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=41.8
Q ss_pred hHhhHhHHHHHHhhHhhcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHH
Q psy11519 55 SIDFRSTVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDER 107 (150)
Q Consensus 55 il~~~~~v~~~l~~~~~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~ 107 (150)
++..++...+-|...=.-.+...|...|.++.+.+.+|.+..+.=.+.|++-.
T Consensus 29 ~l~~l~s~~~~l~~~W~G~a~~~f~~~~~~w~~~~~~l~~~l~~i~~~l~~~a 81 (97)
T COG4842 29 LLQDLASEIAKLQSAWEGDAAEAFQSEQQQWNQAATELNEALEQLADALRHAA 81 (97)
T ss_pred HHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777766666788889999999999999999999877666666543
No 31
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=21.71 E-value=1.3e+02 Score=22.55 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=24.4
Q ss_pred hHhhHhHHHHHHhhHhhcCChHHHHHHHHH
Q psy11519 55 SIDFRSTVSRSLCRLENVTNFTEFVKAFSQ 84 (150)
Q Consensus 55 il~~~~~v~~~l~~~~~~~s~~el~~~f~~ 84 (150)
|=+.-+...++|++|+.+.+++||.++..+
T Consensus 83 LEeEq~eF~~Fl~rLR~AKDk~EFD~FM~~ 112 (115)
T PF11014_consen 83 LEEEQREFEDFLERLRRAKDKEEFDQFMAE 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 445556788999999999999999988654
No 32
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=20.82 E-value=4.3e+02 Score=25.24 Aligned_cols=87 Identities=8% Similarity=0.043 Sum_probs=49.8
Q ss_pred HHHhhhhhhcCCCcchhccccccc--hhhHHHhHHHhhcChhhHhhHhHHHHHHhhHhhcC--ChHHHHHHHHHHhHHHH
Q psy11519 15 MSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDSLLHLVDPPSIDFRSTVSRSLCRLENVT--NFTEFVKAFSQFGGEMV 90 (150)
Q Consensus 15 m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtrlLllaD~~il~~~~~v~~~l~~~~~~~--s~~el~~~f~~f~~~m~ 90 (150)
|-.+-+.+..+|.+...|..++.. .| ...++.+...|..++.-- ....-+.....+...+.
T Consensus 112 Ff~alq~la~~P~s~aaRq~vl~~A~~L---------------a~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA 176 (676)
T PRK05683 112 FFTALQTAAANPTDTAARQLLLTQAQGL---------------SKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIA 176 (676)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778899999999988877 43 333344444444443322 12334555566666666
Q ss_pred HHHHHHhhh------hccCccHHHHHHHHHHHHH
Q psy11519 91 ELAHVTGER------GGDLKDERRRAQMSAARQV 118 (150)
Q Consensus 91 ~l~~~~~~R------q~dLk~~~~rd~l~aAr~~ 118 (150)
+|+....+- .+||. ++||+|..-+..
T Consensus 177 ~LN~qI~~~~~~G~~~NdLl--DqRD~Ll~eLS~ 208 (676)
T PRK05683 177 SYNKQIAQASASGATPNDLL--DARDEAVRQLNE 208 (676)
T ss_pred HHHHHHHHhhcCCCCchHhH--HHHHHHHHHHHh
Confidence 666665432 34554 467777554443
No 33
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=20.58 E-value=2.1e+02 Score=17.13 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=33.8
Q ss_pred hHHHHHHhhHhhcCChHHHHHHHHHH---hHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHH
Q psy11519 60 STVSRSLCRLENVTNFTEFVKAFSQF---GGEMVELAHVTGERGGDLKDERRRAQMSAARQVL 119 (150)
Q Consensus 60 ~~v~~~l~~~~~~~s~~el~~~f~~f---~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~L 119 (150)
+.|.+-|..+ ...+....|+.. |..+.+++...-. .-..+++.+|..|..+-..|
T Consensus 5 ~~V~~wL~~~----~~~~y~~~f~~~~i~g~~L~~l~~~dL~-~lgi~~~g~r~~i~~~i~~l 62 (63)
T cd00166 5 EDVAEWLESL----GLGQYADNFRENGIDGDLLLLLTEEDLK-ELGITLPGHRKKILKAIQKL 62 (63)
T ss_pred HHHHHHHHHc----ChHHHHHHHHHcCCCHHHHhHCCHHHHH-HcCCCCHHHHHHHHHHHHHc
Confidence 3455555443 347788888776 4444444443323 66778889999987766554
No 34
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=20.18 E-value=3.2e+02 Score=24.40 Aligned_cols=88 Identities=8% Similarity=0.016 Sum_probs=47.7
Q ss_pred HHHHhhhhhhcCCCcchhccccccc--hhhHHHhHHHhhcChhhHhhHhHHHHHHhhHhhcC--ChHHHHHHHHHHhHHH
Q psy11519 14 SMSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDSLLHLVDPPSIDFRSTVSRSLCRLENVT--NFTEFVKAFSQFGGEM 89 (150)
Q Consensus 14 ~m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtrlLllaD~~il~~~~~v~~~l~~~~~~~--s~~el~~~f~~f~~~m 89 (150)
.|-.+-+.+..+|.+...|..++.. .|-..... +...|..++.-- ....-+.....+...+
T Consensus 111 ~ff~a~~~la~~P~~~~~r~~vl~~a~~la~~~n~---------------~~~~l~~~~~~~~~~i~~~V~~iN~ll~~I 175 (456)
T PRK07191 111 NFFSALSAATQLPDSPPMRQQVIESANAMALRFNN---------------VNNFIVQQKKSIGQQRDATVKQINSLTRSI 175 (456)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567888999999999988877 44333322 222222222211 1123445555555556
Q ss_pred HHHHHHHhhh------hccCccHHHHHHHHHHHHH
Q psy11519 90 VELAHVTGER------GGDLKDERRRAQMSAARQV 118 (150)
Q Consensus 90 ~~l~~~~~~R------q~dLk~~~~rd~l~aAr~~ 118 (150)
.+|+.....- .+||. ++||++..-.+.
T Consensus 176 a~LN~~I~~~~~~g~~~ndL~--DqRD~ll~eLS~ 208 (456)
T PRK07191 176 ADYNQKILKNRSDGNNISDLL--DQRDLQIKKLSG 208 (456)
T ss_pred HHHHHHHHHhhcCCCCCchhH--HHHHHHHHHHHh
Confidence 6666555432 34555 466666554443
No 35
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=20.08 E-value=2.3e+02 Score=21.96 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=50.3
Q ss_pred HHHHHhhHhhcCC-hHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHH
Q psy11519 62 VSRSLCRLENVTN-FTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLL 126 (150)
Q Consensus 62 v~~~l~~~~~~~s-~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L 126 (150)
..+++++...... .++=.+.+++||..+...+...-.|+-+|.-+.-+.++..|++.-+++.-|.
T Consensus 90 w~~~~~~~~~~~~L~~~d~eiL~~lg~~LG~~D~e~Q~k~i~L~~e~L~~~~~~a~~~~~k~~Kmy 155 (171)
T PRK08307 90 WEKALEENWKNTALKKEDIEILLQFGKTLGQSDREGQQKHIRLALEHLEREEEEAEEEQKKNEKMY 155 (171)
T ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 3445555433333 3345677899999999999999999999999999999999999988876553
Done!