Query psy11519
Match_columns 150
No_of_seqs 82 out of 105
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 20:28:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dow_A Alpha-catenin; four-hel 100.0 9.8E-58 3.4E-62 365.9 13.1 150 1-150 34-189 (205)
2 3rf3_A Vinculin, metavinculin; 100.0 2.9E-52 1E-56 343.8 11.8 150 1-150 74-234 (258)
3 4igg_A Catenin alpha-1; asymme 100.0 1.4E-48 4.7E-53 362.4 12.4 150 1-150 9-164 (832)
4 1tr2_A Vinculin isoform 1; act 100.0 3.4E-30 1.2E-34 244.0 11.2 150 1-150 74-234 (1066)
5 1h6g_A Alpha-1 catenin; adhesi 97.6 0.0013 4.5E-08 53.3 12.6 138 4-141 77-230 (256)
6 1u89_A Talin 1, talin; 4-helix 96.3 0.037 1.3E-06 41.5 9.7 74 69-142 63-136 (139)
7 2l7a_A Talin-1; vinculin, bund 96.2 0.084 2.9E-06 39.1 11.1 75 70-144 34-108 (131)
8 1h6g_A Alpha-1 catenin; adhesi 95.6 0.17 5.9E-06 40.7 11.3 68 75-145 40-107 (256)
9 4igg_A Catenin alpha-1; asymme 95.1 0.45 1.5E-05 44.6 13.9 70 73-145 333-402 (832)
10 1tr2_A Vinculin isoform 1; act 94.3 0.76 2.6E-05 43.8 13.6 138 4-141 664-812 (1066)
11 2b0h_A Talin-1; vinculin, heli 87.0 7.5 0.00026 28.7 10.7 89 55-143 21-111 (137)
12 3dyj_A Talin-1; helix bundles, 86.6 13 0.00046 31.2 13.9 128 3-138 121-266 (332)
13 2kvp_A Talin-1; VBS, vinculin, 84.1 12 0.00041 28.4 10.1 89 55-143 49-139 (165)
14 2x0c_A Talin-1; cytoskeleton, 83.7 16 0.00055 30.1 11.4 121 6-144 146-281 (309)
15 3fyq_A CG6831-PA (talin); 5-he 69.4 38 0.0013 26.4 9.4 87 55-141 49-139 (199)
16 3rf3_A Vinculin, metavinculin; 63.8 25 0.00084 28.2 7.3 67 75-144 40-106 (258)
17 3i9y_A Sensor protein; stacked 63.2 38 0.0013 27.5 8.5 68 61-133 172-239 (276)
18 1jw2_A Hemolysin expression mo 54.5 21 0.00073 23.6 4.5 43 62-104 8-55 (72)
19 3dyj_A Talin-1; helix bundles, 51.6 1.1E+02 0.0036 25.7 11.1 88 55-142 58-149 (332)
20 2l7a_A Talin-1; vinculin, bund 47.5 15 0.00051 26.8 3.2 44 3-46 78-123 (131)
21 1sj8_A Talin 1; structural pro 47.2 1.2E+02 0.0042 25.1 10.8 99 34-132 126-241 (308)
22 1z0k_B FYVE-finger-containing 46.7 58 0.002 21.2 5.7 46 51-100 21-66 (69)
23 2l10_A Talin-1; helical bundle 41.4 1.1E+02 0.0037 22.8 15.0 118 6-143 8-133 (158)
24 3i9w_A Sensor protein TORS; st 41.2 45 0.0015 27.3 5.5 63 67-134 185-250 (290)
25 4hpq_C ATG17, KLTH0D15642P; au 40.6 77 0.0026 27.2 7.0 54 43-101 295-350 (413)
26 2x0c_A Talin-1; cytoskeleton, 39.1 1.6E+02 0.0054 24.1 14.2 76 22-112 98-175 (309)
27 2jqt_A H-NS/STPA-binding prote 37.8 22 0.00077 23.4 2.5 42 63-104 4-51 (71)
28 1usu_A Heat shock protein HSP8 33.0 68 0.0023 25.8 5.2 53 40-94 104-160 (260)
29 2cge_A ATP-dependent molecular 29.2 73 0.0025 27.1 5.0 34 59-94 125-158 (405)
30 3vf0_A Vinculin, metavinculin; 27.1 2.4E+02 0.0081 23.1 7.5 71 55-126 136-212 (283)
31 3pry_A Heat shock protein HSP 26.1 75 0.0026 25.7 4.3 33 59-93 127-159 (268)
32 1k04_A FADK 1, focal adhesion 23.9 2.3E+02 0.008 21.3 9.2 56 76-132 58-113 (162)
33 2b0h_A Talin-1; vinculin, heli 23.6 2.1E+02 0.0073 20.7 7.1 50 77-126 79-129 (137)
34 3q6m_A Heat shock protein HSP 21.7 92 0.0031 27.1 4.3 53 39-93 103-159 (448)
35 3gxq_A Putative regulator of t 21.0 73 0.0025 19.3 2.5 10 114-123 41-50 (54)
36 1yzm_A FYVE-finger-containing 20.3 1.6E+02 0.0054 18.0 6.2 33 52-84 4-36 (51)
37 2d4y_A HAP1, flagellar HOOK-as 20.2 2.1E+02 0.007 24.1 6.2 88 14-118 48-147 (463)
No 1
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=100.00 E-value=9.8e-58 Score=365.90 Aligned_cols=150 Identities=25% Similarity=0.354 Sum_probs=149.1
Q ss_pred ChHHHHHHHHHhHHHHHhhhhhhcCCCcchhccccccc--hhhHHHhHHHhhcChh----hHhhHhHHHHHHhhHhhcCC
Q psy11519 1 MNDQITSALELTISMSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDSLLHLVDPP----SIDFRSTVSRSLCRLENVTN 74 (150)
Q Consensus 1 m~~A~~~v~~aG~~m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtrlLllaD~~----il~~~~~v~~~l~~~~~~~s 74 (150)
||+||++|+++|+.|..++++|..||||.++|+.||+| +||+|||||||+||++ |++++++|+++|+++++++|
T Consensus 34 M~~A~~~v~~ag~~l~~a~~~~~~dP~s~~~R~~lV~aaR~lLs~vtrlLllaD~~~Vrkil~~~~~v~~~L~~le~~~s 113 (205)
T 1dow_A 34 LVVAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNAGN 113 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999 9999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcCCCcHHHHhccccCC
Q psy11519 75 FTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETARQNRDTVF 150 (150)
Q Consensus 75 ~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~hp~~~~A~~nRd~v~ 150 (150)
|+||+++|++||++|.+|++++++||+|||||.|||+|++||++||+++||||||||+||+||++++|++||||+|
T Consensus 114 ~~el~~~f~~f~~~m~~l~~l~~~Rq~dLk~~~~rd~l~aAr~~Lk~~sp~L~ta~k~~lrhp~~~~a~~nRd~v~ 189 (205)
T 1dow_A 114 EQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGNRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIY 189 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ...
Probab=100.00 E-value=2.9e-52 Score=343.80 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=148.9
Q ss_pred ChHHHHHHHHHhHHHHHhhhhhhcCCCcchhccccccc--hhhHHHhHHHhhcChh----hHhhHhHHHHHHhhHhhcCC
Q psy11519 1 MNDQITSALELTISMSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDSLLHLVDPP----SIDFRSTVSRSLCRLENVTN 74 (150)
Q Consensus 1 m~~A~~~v~~aG~~m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtrlLllaD~~----il~~~~~v~~~l~~~~~~~s 74 (150)
||+||++|+++|+.|..++++|.+|||++++|+.||+| +||++||||||+||++ |+.++++|+++|+++++++|
T Consensus 74 M~~A~~~v~~ag~~l~~aa~~~~~dP~s~~~R~~lV~aAR~lLs~vtrlLllaD~~dVr~il~~~~~v~~~l~~l~~~~~ 153 (258)
T 3rf3_A 74 MPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVVET 153 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999999999999999 9999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcC-----CCcHHHHhccccC
Q psy11519 75 FTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRH-----PDSETARQNRDTV 149 (150)
Q Consensus 75 ~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~h-----p~~~~A~~nRd~v 149 (150)
++||+++|++||++|++|++++++||+|||||.||++|++||++||+++||||||||+|++| |++++|++||||+
T Consensus 154 ~~el~~~~~~f~~~~~~L~~~~~~Rq~eL~~~~~r~~l~~Ar~~Lk~~~p~L~ta~k~~lrh~~~~~~~~~~a~~nRd~v 233 (258)
T 3rf3_A 154 MEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFT 233 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999998
Q ss_pred C
Q psy11519 150 F 150 (150)
Q Consensus 150 ~ 150 (150)
|
T Consensus 234 ~ 234 (258)
T 3rf3_A 234 V 234 (258)
T ss_dssp H
T ss_pred H
Confidence 5
No 3
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=100.00 E-value=1.4e-48 Score=362.39 Aligned_cols=150 Identities=25% Similarity=0.362 Sum_probs=149.1
Q ss_pred ChHHHHHHHHHhHHHHHhhhhhhcCCCcchhccccccc--hhhHHHhHHHhhcChh----hHhhHhHHHHHHhhHhhcCC
Q psy11519 1 MNDQITSALELTISMSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDSLLHLVDPP----SIDFRSTVSRSLCRLENVTN 74 (150)
Q Consensus 1 m~~A~~~v~~aG~~m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtrlLllaD~~----il~~~~~v~~~l~~~~~~~s 74 (150)
||+||++|+++|++|..++++|.+|||++++|+.||+| +||++|||||||||++ ||..+++|+++|+++++++|
T Consensus 9 M~~A~~~v~~ag~~l~~aa~~l~~DP~s~~~R~~lV~aAR~LLs~vTrLLllaD~~~VrkIi~~~~~Vl~~L~~le~v~s 88 (832)
T 4igg_A 9 LVAAVEDVRKQGDLMKAAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNAGN 88 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999999999999999 9999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcCCCcHHHHhccccCC
Q psy11519 75 FTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETARQNRDTVF 150 (150)
Q Consensus 75 ~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~hp~~~~A~~nRd~v~ 150 (150)
|+||+++|++||++|++|++++++||+|||||.||++|++||++||+++||||||||+||+||++++|++||||||
T Consensus 89 ~~eLv~~f~~f~~~m~eL~~lt~~Rq~dLk~~~~R~~L~aAr~~Lk~~spmLlta~Kt~lrhp~~~~A~~nRd~v~ 164 (832)
T 4igg_A 89 EQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIY 164 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
No 4
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A
Probab=99.96 E-value=3.4e-30 Score=244.03 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=147.3
Q ss_pred ChHHHHHHHHHhHHHHHhhhhhhcCCCcchhccccccc--hhhHHHhHHHhhcChh----hHhhHhHHHHHHhhHhhcCC
Q psy11519 1 MNDQITSALELTISMSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDSLLHLVDPP----SIDFRSTVSRSLCRLENVTN 74 (150)
Q Consensus 1 m~~A~~~v~~aG~~m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtrlLllaD~~----il~~~~~v~~~l~~~~~~~s 74 (150)
||+||++|+.+|..|..+++.|..||+++++|+.||+| +||++|++||++||++ |+..|++|+++|+.++++++
T Consensus 74 m~~A~~~v~~a~s~L~~aak~l~~dp~s~~~r~~Li~aAR~vl~sv~~LL~~~D~a~v~kl~~a~~~v~~~L~~~~~~~~ 153 (1066)
T 1tr2_A 74 MPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVVET 153 (1066)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHCTTCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 79999999999999999999999999999999999999 9999999999999999 89999999999999999999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhc--C---CCcHHHHhccccC
Q psy11519 75 FTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLR--H---PDSETARQNRDTV 149 (150)
Q Consensus 75 ~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~--h---p~~~~A~~nRd~v 149 (150)
++||+++||+||++|.+|++.+++||+||+|+.+|++|.+|+..|++++|+|++|+|+|++ | |++++|++||+|+
T Consensus 154 ~~elv~~~k~l~~~m~~l~~~~~~r~~~l~d~~~r~~L~~A~~~L~~~~~~L~~a~k~~~~~~~~~~~~~~~A~~~r~~~ 233 (1066)
T 1tr2_A 154 MEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFT 233 (1066)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCCCcccHHHHHhhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 6 8999999999997
Q ss_pred C
Q psy11519 150 F 150 (150)
Q Consensus 150 ~ 150 (150)
|
T Consensus 234 ~ 234 (1066)
T 1tr2_A 234 V 234 (1066)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=97.57 E-value=0.0013 Score=53.30 Aligned_cols=138 Identities=8% Similarity=0.052 Sum_probs=109.6
Q ss_pred HHHHHHHHhHHHHHhhhhhhcCCCcchhccccccc--hhhHHHhHHHhhcChh------hHhhHhHHHHHH---hhHhhc
Q psy11519 4 QITSALELTISMSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDSLLHLVDPP------SIDFRSTVSRSL---CRLENV 72 (150)
Q Consensus 4 A~~~v~~aG~~m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtrlLllaD~~------il~~~~~v~~~l---~~~~~~ 72 (150)
|...++..+.-+..+++.+...|.|...+++|--. ..-..|..|.-++|.+ |--+...+.++. ...-..
T Consensus 77 aa~~~~~l~pQvv~aar~l~~~p~s~~a~E~l~~~~~~w~~~v~~L~~~vd~~~~~~~fl~ase~~i~~~~~~c~~al~~ 156 (256)
T 1h6g_A 77 SASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQE 156 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44556777777889999999999999999999666 6677777777777766 112222222222 233477
Q ss_pred CChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhh-hHHHHHhhhhh----hcCCCcHH
Q psy11519 73 TNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERS-TMLLLTSSKTC----LRHPDSET 141 (150)
Q Consensus 73 ~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~-~~~L~ts~kt~----l~hp~~~~ 141 (150)
++.++++...+.+......+...+..-..--.||..|+.+..|-..|... +|-+..+.|.| -.+|+.+.
T Consensus 157 ~d~~~~~~~a~~i~~~a~rv~~v~k~e~d~~ed~~~~~~v~~a~~~L~~a~~p~mv~~ak~~~~~~a~np~d~~ 230 (256)
T 1h6g_A 157 KDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPM 230 (256)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSSCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHH
Confidence 88999999999999999999999998888889999999999999999997 99999999998 77887644
No 6
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1
Probab=96.30 E-value=0.037 Score=41.47 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=67.3
Q ss_pred HhhcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcCCCcHHH
Q psy11519 69 LENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETA 142 (150)
Q Consensus 69 ~~~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~hp~~~~A 142 (150)
+.+..+.+|.++..+.++.....|-+........-.||.+|+.|..|=..|-..+.-|+=+.|-|-.||++++.
T Consensus 63 ~~s~gd~~eMvrqak~Laqat~~LV~~iK~eAe~~~D~~~q~rLL~AAk~lAdATa~mVeAAk~~a~nP~~~~~ 136 (139)
T 1u89_A 63 FSSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEAAKGAAAHPDSEEQ 136 (139)
T ss_dssp HHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSCC
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 34566788999999999999999999999999999999999999999999999999999999999999998654
No 7
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=96.22 E-value=0.084 Score=39.09 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=66.5
Q ss_pred hhcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcCCCcHHHHh
Q psy11519 70 ENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETARQ 144 (150)
Q Consensus 70 ~~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~hp~~~~A~~ 144 (150)
-+-.+.++.+...+.++.....|-.........-.||..|+.|..|=..|-..++=|.=+.|.|-.||++++++.
T Consensus 34 ~s~~~p~~Mv~~ak~iAr~a~~Li~~~K~eAd~seDp~~~~rLl~AAk~La~At~~MVeaAK~~A~NP~d~~~q~ 108 (131)
T 2l7a_A 34 SSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEAAKGAAAHPDSEEQQQ 108 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 456778899999999999998888877777778899999999999999999999999999999999999976543
No 8
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=95.57 E-value=0.17 Score=40.69 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcCCCcHHHHhc
Q psy11519 75 FTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETARQN 145 (150)
Q Consensus 75 ~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~hp~~~~A~~n 145 (150)
+.+....|.++...|.+.++++.. -=.||.....+..|-..++..+|-++++.|+...||++..|++|
T Consensus 40 ~~~~~~~f~~~~~~l~~~aklva~---~s~~~~~~~~v~~aa~~~~~l~pQvv~aar~l~~~p~s~~a~E~ 107 (256)
T 1h6g_A 40 VKEYAQVFREHANKLIEVANLACS---ISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQEN 107 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCHHHHHH
Confidence 455667778888888888888765 33589999999999999999999999999999999999999887
No 9
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=95.08 E-value=0.45 Score=44.56 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcCCCcHHHHhc
Q psy11519 73 TNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETARQN 145 (150)
Q Consensus 73 ~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~hp~~~~A~~n 145 (150)
.++++....|.++...|.+.++++. .- -.|+.....+..+-..|+..+|-+++|.++...||++..|++|
T Consensus 333 e~~~e~a~~F~eha~~lvevA~Lv~--~~-s~ne~~v~~i~~aa~~le~L~PQVI~Aar~L~~~P~Sk~A~En 402 (832)
T 4igg_A 333 KEVKEYAQVFREHANKLIEVANLAC--SI-SNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQEN 402 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hh-cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHH
Confidence 4566677788888899999999993 33 5588899999999999999999999999999999999999988
No 10
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A
Probab=94.27 E-value=0.76 Score=43.78 Aligned_cols=138 Identities=14% Similarity=0.156 Sum_probs=100.7
Q ss_pred HHHHHHHHhHHHHHhhhhhhcCCCcchhccccccc--hhhHHHhHHHhhcChh--h---Hhh-HhHHHHHHhhHhh---c
Q psy11519 4 QITSALELTISMSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDSLLHLVDPP--S---IDF-RSTVSRSLCRLEN---V 72 (150)
Q Consensus 4 A~~~v~~aG~~m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtrlLllaD~~--i---l~~-~~~v~~~l~~~~~---~ 72 (150)
|...+++.+..+..+++....+|.+...+.++... .+-..|.+|+-..|.+ + +.. -+.+.+....+.. .
T Consensus 664 aa~~l~~~t~~lv~aar~~~~~p~n~~Ak~~l~~~~~~~~~~v~~L~~~V~~i~dl~~f~aas~~~i~ed~~~~~~a~~~ 743 (1066)
T 1tr2_A 664 SVKTARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAIDTKSLLDASEEAIKKDLDKCKVAMAN 743 (1066)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCSCTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566777788889999999999999999999888 8888888887777665 1 111 1233333333322 3
Q ss_pred CChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcCCCcHH
Q psy11519 73 TNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSET 141 (150)
Q Consensus 73 ~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~hp~~~~ 141 (150)
+..+.|...-+.....+..|...+..=..---||..+..+..|-..|...++=|+.+.|.+...|..+.
T Consensus 744 ~~~~~l~~~a~~i~~~~~~l~~vv~~~~~~s~~p~~q~~v~~a~k~l~~s~~~li~~aK~~a~~p~d~~ 812 (1066)
T 1tr2_A 744 IQPQMLVAGATSIARRANRILLVAKREVENSEDPKFREAVKAASDELSKTISPMVMDAKAVAGNISDPG 812 (1066)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCTTCTT
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCChH
Confidence 455678888888888888887777655555678999999987777777777777778899988886654
No 11
>2b0h_A Talin-1; vinculin, helical bundle, VBS, structural protein; NMR {Mus musculus} SCOP: a.24.9.2
Probab=87.03 E-value=7.5 Score=28.68 Aligned_cols=89 Identities=13% Similarity=0.103 Sum_probs=78.5
Q ss_pred hHhhHhHHHHHHhhH--hhcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhh
Q psy11519 55 SIDFRSTVSRSLCRL--ENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKT 132 (150)
Q Consensus 55 il~~~~~v~~~l~~~--~~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt 132 (150)
|++.++.+..+...+ ....+++||...-++++..-.+|+..+..=..-+-+++-..+|..+-..|=..+.=|+.+.+.
T Consensus 21 m~~~~K~iA~~aqemv~ks~~~p~eL~~la~~lt~~Y~~La~~~~~A~~~~~~~~v~~~Ir~~Vq~LG~ac~~lV~~ag~ 100 (137)
T 2b0h_A 21 MVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKAGA 100 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSSTHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 778888888888877 467899999999999999999999999999999999999999999998998888889999999
Q ss_pred hhcCCCcHHHH
Q psy11519 133 CLRHPDSETAR 143 (150)
Q Consensus 133 ~l~hp~~~~A~ 143 (150)
+=.||++..++
T Consensus 101 ~q~~p~d~~~q 111 (137)
T 2b0h_A 101 LQCSPSDVYTK 111 (137)
T ss_dssp HHHCTTCHHHH
T ss_pred ccCCcccHHHH
Confidence 98899876653
No 12
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Probab=86.59 E-value=13 Score=31.17 Aligned_cols=128 Identities=12% Similarity=0.142 Sum_probs=90.3
Q ss_pred HHHHHHHHHhHHHHHhhhhhhcCCCcchhccccccc--hhhHHHhHHHhhc----Chh--hHhhHhHHHHHHhh----Hh
Q psy11519 3 DQITSALELTISMSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDSLLHLV----DPP--SIDFRSTVSRSLCR----LE 70 (150)
Q Consensus 3 ~A~~~v~~aG~~m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtrlLlla----D~~--il~~~~~v~~~l~~----~~ 70 (150)
.|+.+|-.+-..|..+++.-...|...+.-..+-.+ .+.++|++||=.. |.. -++.++.+.+.+.. +.
T Consensus 121 na~kdVa~al~~Li~atK~A~G~~~~dpa~~~Lk~aAk~mv~nV~sLlktVk~vede~~rG~RaLEaai~~I~~el~~~~ 200 (332)
T 3dyj_A 121 NAVKDVAKALGDLISATKAAAGKVGDDPAVWQLKNSAKVMVTNVTSLLKTVKAVEDEATKGTRALEATTEHIRQELAVFC 200 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHccC
Confidence 467888888889999998888888877777777777 8999999998875 555 66666665555422 11
Q ss_pred ------hcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcCCC
Q psy11519 71 ------NVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPD 138 (150)
Q Consensus 71 ------~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~hp~ 138 (150)
+..+.+||.+.-+.+.....++-....- ..++++..+-...++.+-=|+.++|.-..|++
T Consensus 201 s~~~p~~~~tpE~li~~ak~vt~atakaVaA~ns--------~~qeDii~aan~~r~aV~dll~~~k~aa~~~~ 266 (332)
T 3dyj_A 201 SPEPPAKTSTPEDFIRMTKGITMATAKAVAAGNS--------CRQEDVIATANLSRRAIADMLRACKEAAFHPE 266 (332)
T ss_dssp SSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCC--------CCHHHHHHHHHhHHHHHHHHHHHHHHHHhccC
Confidence 2245778888888877776555444332 23355667777777777777778887777776
No 13
>2kvp_A Talin-1; VBS, vinculin, helical bundle, cytoplasm, cytoskeleto membrane, phosphoprotein, structural protein, acetylation, membrane; NMR {Mus musculus}
Probab=84.07 E-value=12 Score=28.36 Aligned_cols=89 Identities=13% Similarity=0.103 Sum_probs=78.3
Q ss_pred hHhhHhHHHHHHhhH--hhcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhh
Q psy11519 55 SIDFRSTVSRSLCRL--ENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKT 132 (150)
Q Consensus 55 il~~~~~v~~~l~~~--~~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt 132 (150)
|++.++.+..+...+ ....+++||...-++++..-.+|+..+..=..-+-+++-..+|..+-..|=..+.=|+.+.+.
T Consensus 49 m~~~~K~iA~~aq~mv~k~~~~p~eL~~la~~it~~y~~La~~~~~A~~t~~~~~i~~~Ik~~Vq~LG~sc~~lV~~ag~ 128 (165)
T 2kvp_A 49 MVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKAGA 128 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 888888888888877 467899999999999999999999999998999999999999999988888888889999999
Q ss_pred hhcCCCcHHHH
Q psy11519 133 CLRHPDSETAR 143 (150)
Q Consensus 133 ~l~hp~~~~A~ 143 (150)
+=.||++..++
T Consensus 129 ~q~~p~d~~~q 139 (165)
T 2kvp_A 129 LQCSPSDVYTK 139 (165)
T ss_dssp HHHCTTCHHHH
T ss_pred ccCCCccHHHH
Confidence 98899866543
No 14
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu cell adhesion, cell projection; 2.00A {Mus musculus} PDB: 1zw3_B
Probab=83.72 E-value=16 Score=30.13 Aligned_cols=121 Identities=11% Similarity=0.122 Sum_probs=75.2
Q ss_pred HHHHHHhHHHHHhhhhhhcCCCcchhccccccc--hhhHHHhHHHhhcChhhHhhHhHHHHHHhhHhhc---CChHHHHH
Q psy11519 6 TSALELTISMSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDSLLHLVDPPSIDFRSTVSRSLCRLENV---TNFTEFVK 80 (150)
Q Consensus 6 ~~v~~aG~~m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtrlLllaD~~il~~~~~v~~~l~~~~~~---~s~~el~~ 80 (150)
..|-+....|..+++.-...|.....|..++.+ .+-.+++.|+ .++..+... .+.+++..
T Consensus 146 ~~va~~t~~L~~~cr~as~~~~n~~~k~ql~~~ak~va~st~~lV---------------~~iK~ld~~~~~~~r~~~~~ 210 (309)
T 2x0c_A 146 TIVAKHTSALCNSCRLASARTANPTAKRQFVQSAKEVANSTANLV---------------KTIKALDGDFTEENRAQCRA 210 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHH---------------HHHHHHhccCCchhHHHHHH
Confidence 444555556666666666677777777777777 6666655543 233333333 34466888
Q ss_pred HHHHHhHHHHHHHHHHhhhhccCc------c----HHHHHHHHHHHHHHHhhhHHHHHhhhhhhcCCCcHHHHh
Q psy11519 81 AFSQFGGEMVELAHVTGERGGDLK------D----ERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETARQ 144 (150)
Q Consensus 81 ~f~~f~~~m~~l~~~~~~Rq~dLk------~----~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~hp~~~~A~~ 144 (150)
+.+.|.....+|-..+. .-|+- . ..++..+.++|.++..++- |+...|.+.-||+.+..+.
T Consensus 211 aa~~L~~Av~~Lv~~A~--spefa~~~~~is~~~~~aq~~il~a~r~v~~~s~~-ll~taK~la~~P~dp~~~~ 281 (309)
T 2x0c_A 211 ATAPLLEAVDNLSAFAS--NPEFSSVPAQISPEGRAAMEPIVISAKTMLESAGG-LIQTARALAVNPRDPPRWS 281 (309)
T ss_dssp HHHHHHHHHHHHHHHHT--SSSSSCBCCBCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--ChhhhhcccccChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCchHHH
Confidence 88888887777777653 11221 1 2355667777777765554 5556688889999887654
No 15
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=69.44 E-value=38 Score=26.44 Aligned_cols=87 Identities=9% Similarity=0.037 Sum_probs=55.5
Q ss_pred hHhhHhHHHHHHhhHh--hcCChHHHHHHHHHHhHHHHHHHHHHhhhhccC--ccHHHHHHHHHHHHHHHhhhHHHHHhh
Q psy11519 55 SIDFRSTVSRSLCRLE--NVTNFTEFVKAFSQFGGEMVELAHVTGERGGDL--KDERRRAQMSAARQVLERSTMLLLTSS 130 (150)
Q Consensus 55 il~~~~~v~~~l~~~~--~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dL--k~~~~rd~l~aAr~~Lk~~~~~L~ts~ 130 (150)
|++..+.+.+.-..+. +.+|.++|-..-+.+..-+.+|++.+..=..-| .||.-+-.|..|-..+-...-=|+.++
T Consensus 49 Ilk~Ak~Lvedtk~LV~~a~~tQe~LA~aa~~~v~~i~~La~~vK~gAAsl~s~dp~tQv~LLna~kdVa~aL~~Li~at 128 (199)
T 3fyq_A 49 ILQTAKALVEDTKVLVTGAAGTQDQLANAAQNAVSTITQLAEAVKRGACSLGSTQPDSQVMVINAVKDVASALGDLINCT 128 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555443 356777788888999999999998888887777 677666666555545555556666777
Q ss_pred hhhhcCCCcHH
Q psy11519 131 KTCLRHPDSET 141 (150)
Q Consensus 131 kt~l~hp~~~~ 141 (150)
|.-=+.|..++
T Consensus 129 K~a~g~~~~d~ 139 (199)
T 3fyq_A 129 KLASGKSINDP 139 (199)
T ss_dssp HHHC-------
T ss_pred hhccCCCCCch
Confidence 76656664443
No 16
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ...
Probab=63.80 E-value=25 Score=28.21 Aligned_cols=67 Identities=21% Similarity=0.193 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcCCCcHHHHh
Q psy11519 75 FTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETARQ 144 (150)
Q Consensus 75 ~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~hp~~~~A~~ 144 (150)
..-+++....=...+++.++.+.. +=.||.-+++|-.|-+-+++.+..|..++..|...|.+..+|.
T Consensus 40 ~~~~~~aV~~Av~nfv~vG~~ia~---~~ed~~lk~eM~~A~~~v~~ag~~l~~aa~~~~~dP~s~~~R~ 106 (258)
T 3rf3_A 40 LTAPVAAVQAAVSNLVRVGKETVQ---TTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARD 106 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh---cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHH
Confidence 334444444433334444433333 3457888899999999999999999999999988898877664
No 17
>3i9y_A Sensor protein; stacked two four-helix bundles, ATP-binding, kinase, nucleotide-binding, phosphoprotein, transferase, transmembrane; 2.16A {Vibrio parahaemolyticus} PDB: 3o1i_A* 3o1h_A* 3o1j_A
Probab=63.23 E-value=38 Score=27.49 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=51.5
Q ss_pred HHHHHHhhHhhcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhh
Q psy11519 61 TVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTC 133 (150)
Q Consensus 61 ~v~~~l~~~~~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~ 133 (150)
++..-+..+....+..++.+.=++|+..+. ...+|.....||.++.++......|.+. +-++..-+-+
T Consensus 172 ~l~~~i~~~~~~~~~~~l~~l~~~~~~~l~----il~rRv~~I~DP~R~~q~~~lL~~L~~~-~~l~~l~~q~ 239 (276)
T 3i9y_A 172 KMLNQIEEARTLTNVDRIQQIQTAFENNLK----IMKRRVLAVEDPTRSKQMSQLLTELGKR-QVVFTILLQQ 239 (276)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHH----HHHHHHHTCCSHHHHHHHHHHHHHHHHG-GGHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHH----HHHHHHHhcCCchHHHHHHHHHHHHHcc-chHHHHHHHH
Confidence 455667777788888888888888887774 5678899999999999999999999743 4454444433
No 18
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=54.53 E-value=21 Score=23.60 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=36.0
Q ss_pred HHHHHhhHhhcCChHHHHHHHHHH-----hHHHHHHHHHHhhhhccCc
Q psy11519 62 VSRSLCRLENVTNFTEFVKAFSQF-----GGEMVELAHVTGERGGDLK 104 (150)
Q Consensus 62 v~~~l~~~~~~~s~~el~~~f~~f-----~~~m~~l~~~~~~Rq~dLk 104 (150)
..|+|=+++.++|.+-|.+.|... +.+++.+...++.|-.||+
T Consensus 8 k~d~L~k~Rrc~s~eTLEkv~e~~~y~Lt~~el~~f~~AaDHR~AEL~ 55 (72)
T 1jw2_A 8 KTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELT 55 (72)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999988544 3488889999999988875
No 19
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Probab=51.56 E-value=1.1e+02 Score=25.67 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=61.9
Q ss_pred hHhhHhHHHHHHhhHh--hcCChHHHHHHHHHHhHHHHHHHHHHhhhhccC--ccHHHHHHHHHHHHHHHhhhHHHHHhh
Q psy11519 55 SIDFRSTVSRSLCRLE--NVTNFTEFVKAFSQFGGEMVELAHVTGERGGDL--KDERRRAQMSAARQVLERSTMLLLTSS 130 (150)
Q Consensus 55 il~~~~~v~~~l~~~~--~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dL--k~~~~rd~l~aAr~~Lk~~~~~L~ts~ 130 (150)
|++..+.+.+....+. ..++.++|-..-+++..-+..|++.+..=..-| -||.-+-.|..|-..+-...-=|+.++
T Consensus 58 Ilk~ak~Lve~~~~Lv~~a~~tqe~La~aa~~~a~~i~~La~~vK~gAAsl~~~d~~tQv~lLna~kdVa~al~~Li~at 137 (332)
T 3dyj_A 58 ILKTAKVLVEDTKVLVQNAAGSQEKLAQAAQSSVATITRLADVVKLGAASLGAEDPETQVVLINAVKDVAKALGDLISAT 137 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666554 456777899999999999999999998888887 777666665544444444445555666
Q ss_pred hhhhcCCCcHHH
Q psy11519 131 KTCLRHPDSETA 142 (150)
Q Consensus 131 kt~l~hp~~~~A 142 (150)
|.-=.+|..+++
T Consensus 138 K~A~G~~~~dpa 149 (332)
T 3dyj_A 138 KAAAGKVGDDPA 149 (332)
T ss_dssp HHTTTCCTTCHH
T ss_pred HhccCCCCCChh
Confidence 666688876554
No 20
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=47.49 E-value=15 Score=26.82 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=34.8
Q ss_pred HHHHHHHHHhHHHHHhhhhhhcCCCcchhccccccc--hhhHHHhH
Q psy11519 3 DQITSALELTISMSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDS 46 (150)
Q Consensus 3 ~A~~~v~~aG~~m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtr 46 (150)
.|...+.++-.-|+.+++.+...|.++.....+.+| .|+.+|..
T Consensus 78 ~AAk~La~At~~MVeaAK~~A~NP~d~~~q~~Lr~Aae~L~~at~~ 123 (131)
T 2l7a_A 78 SAAKILADATAKMVEAAKGAAAHPDSEEQQQRLREAAEGLRMATNA 123 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888888888888888 77776654
No 21
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1
Probab=47.23 E-value=1.2e+02 Score=25.09 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=66.1
Q ss_pred ccccc--hhhHHHhHHHhhcChh-------hHhhHhHHHH-------HHhhHhhcCChHH-HHHHHHHHhHHHHHHHHHH
Q psy11519 34 RLNRP--YCLDNIDSLLHLVDPP-------SIDFRSTVSR-------SLCRLENVTNFTE-FVKAFSQFGGEMVELAHVT 96 (150)
Q Consensus 34 ~lvra--~lLs~vtrlLllaD~~-------il~~~~~v~~-------~l~~~~~~~s~~e-l~~~f~~f~~~m~~l~~~~ 96 (150)
.++.| .|-.++++||--+... |+.....|-+ ++..-+.-+.++| |+..-|.-...-..|-..+
T Consensus 126 ~Ll~AAk~l~~Ais~Llkaa~~~~~e~rq~ll~AA~~Vg~as~~~l~~i~e~~~d~~~~e~Li~aAKAVA~ATa~LV~~A 205 (308)
T 1sj8_A 126 PLLQAAKGLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGELLQQIGESDTDPHFQDVLMQLANAVASAAAALVLKA 205 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHHHHHHHTTCCCSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccchHHHHHHHHHhHhHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666 8888888887766665 6655555433 2221112233554 6666676666666666666
Q ss_pred hhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhh
Q psy11519 97 GERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKT 132 (150)
Q Consensus 97 ~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt 132 (150)
..=...-.||..|++++.|=...-..+.-|.+++|+
T Consensus 206 k~Va~~~~d~e~Q~~lI~AA~~~A~sTsQLVA~sKV 241 (308)
T 1sj8_A 206 KSVAQRTEDSGLQTQVIAAATQCALSTSQLVACTKV 241 (308)
T ss_dssp HHHHTSCTTSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 655666778888899988888777788888888885
No 22
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=46.75 E-value=58 Score=21.25 Aligned_cols=46 Identities=7% Similarity=0.073 Sum_probs=33.2
Q ss_pred cChhhHhhHhHHHHHHhhHhhcCChHHHHHHHHHHhHHHHHHHHHHhhhh
Q psy11519 51 VDPPSIDFRSTVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERG 100 (150)
Q Consensus 51 aD~~il~~~~~v~~~l~~~~~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq 100 (150)
.|..++++...|..+|...+....++|+...=.+ +-+|.....++|
T Consensus 21 ~~dPL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~N----LrEL~~ei~~~q 66 (69)
T 1z0k_B 21 DSDPLLQQIHNITSFIRQAKAAGRMDEVRTLQEN----LRQLQDEYDQQQ 66 (69)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----HHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH----HHHHHHHHHHHh
Confidence 3444999999999999999999999997654333 444444444443
No 23
>2l10_A Talin-1; helical bundle, cytoskeleton, focal adhesion, structu protein; NMR {Mus musculus}
Probab=41.35 E-value=1.1e+02 Score=22.81 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=58.6
Q ss_pred HHHHHHhHHHHHhhhhhhcCCCcchhc------cccccc--hhhHHHhHHHhhcChhhHhhHhHHHHHHhhHhhcCChHH
Q psy11519 6 TSALELTISMSLKMCSLSTHSRPAVNR------CRLNRP--YCLDNIDSLLHLVDPPSIDFRSTVSRSLCRLENVTNFTE 77 (150)
Q Consensus 6 ~~v~~aG~~m~~aa~~f~~dp~s~~~R------~~lvra--~lLs~vtrlLllaD~~il~~~~~v~~~l~~~~~~~s~~e 77 (150)
.+|..+-+.|..+...+..++.+...| ..+..+ .|=.++..|..-+ -++..+
T Consensus 8 rdvd~Ai~~I~~as~~l~~~~~~~~~~~~~~~Q~eL~~aA~~Ln~A~~~vv~aa--------------------rgsp~~ 67 (158)
T 2l10_A 8 RDVDNALRAVGDASKRLLSDLLPPSTGTFQEAQSRLNEAAAGLNQAATELVQAS--------------------RGTPQD 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------TTCHHH
T ss_pred chHHHHHHHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------hcCHHH
Confidence 567788788888877776666543333 223332 3333333332211 123444
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcCCCcHHHH
Q psy11519 78 FVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETAR 143 (150)
Q Consensus 78 l~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l~hp~~~~A~ 143 (150)
|...-+.|+..-.+|-...-.=...=.|+..|.+|..-...+-..+--|+.+.|++--.|+.+-++
T Consensus 68 La~as~~f~~~~~~l~~ag~~mag~~~~~~~r~~iv~~L~~vs~~s~~LL~~ak~~~~dp~~pn~~ 133 (158)
T 2l10_A 68 LARASGRFGQDFSTFLEAGVEMAGQAPSQEDRAQVVSNLKGISMSSSKLLLAAKALSTDPASPNLK 133 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHH
Confidence 444444444442222222211111122455566666666666666666666666666666655544
No 24
>3i9w_A Sensor protein TORS; stacked two four-helix bundles, ATP-binding, cell inner membrane, cell membrane, kinase, membrane; 2.70A {Escherichia coli k-12}
Probab=41.21 E-value=45 Score=27.27 Aligned_cols=63 Identities=14% Similarity=0.012 Sum_probs=44.1
Q ss_pred hhHhhcCChHH---HHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhhhh
Q psy11519 67 CRLENVTNFTE---FVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCL 134 (150)
Q Consensus 67 ~~~~~~~s~~e---l~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt~l 134 (150)
..+..+.+..+ +.+.=+.|+..+ ....+|.....||.++.++......|. ..+-++..-+-++
T Consensus 185 ~~i~~~~~~~~~~~l~~l~~~~~~~l----~il~rRv~~I~DP~R~~q~~~lL~~L~-~~~~l~~l~~q~~ 250 (290)
T 3i9w_A 185 QMVMNLGLEQIQKNAPTLEKQLNNAV----KILQRRQIRIEDPGVRAQVATTLTTVS-QYSDLLALYQQDS 250 (290)
T ss_dssp HHHHTCCSHHHHHTHHHHHHHHHHHH----HHHHHHHTTCSSHHHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHH----HHHHHHHHhcCCchHHHHHHHHHHHHH-ccchHHHHHHHHH
Confidence 34555555444 666666776666 456789999999999999999999996 4444555444443
No 25
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=40.58 E-value=77 Score=27.16 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=38.1
Q ss_pred HHhHHHhhcChh--hHhhHhHHHHHHhhHhhcCChHHHHHHHHHHhHHHHHHHHHHhhhhc
Q psy11519 43 NIDSLLHLVDPP--SIDFRSTVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGG 101 (150)
Q Consensus 43 ~vtrlLllaD~~--il~~~~~v~~~l~~~~~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~ 101 (150)
.+.+.|.+++.+ ++.. ..+.+ ......+.+|..+|..|++.-..|-..+.+|+.
T Consensus 295 ~~~e~l~i~~~i~e~l~~---fk~~~--~~~~~~~~~L~~~Y~~f~~aY~~lL~Ev~RRr~ 350 (413)
T 4hpq_C 295 KHEEYISVFEGISALIQK---FKASC--LEDIRQTRNLLDFYANFERSYHNLLKEVKRRKE 350 (413)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444577777777 5432 22222 445566788999999999999998888888887
No 26
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu cell adhesion, cell projection; 2.00A {Mus musculus} PDB: 1zw3_B
Probab=39.13 E-value=1.6e+02 Score=24.08 Aligned_cols=76 Identities=8% Similarity=0.027 Sum_probs=36.5
Q ss_pred hhcCCCcchhccccccc-hhhHHHhHHHhhcChhhHhhHhHHHHHHhhHhhc-CChHHHHHHHHHHhHHHHHHHHHHhhh
Q psy11519 22 LSTHSRPAVNRCRLNRP-YCLDNIDSLLHLVDPPSIDFRSTVSRSLCRLENV-TNFTEFVKAFSQFGGEMVELAHVTGER 99 (150)
Q Consensus 22 f~~dp~s~~~R~~lvra-~lLs~vtrlLllaD~~il~~~~~v~~~l~~~~~~-~s~~el~~~f~~f~~~m~~l~~~~~~R 99 (150)
-+.||.+.+.|..+|.. . +.+....+...-..+.+- .+...+...-+....+...|.+..+.-
T Consensus 98 gVs~p~s~~g~~glvD~~~---------------~~ra~~~i~~ac~~~~~~~~~q~~vL~~A~~va~~t~~L~~~cr~a 162 (309)
T 2x0c_A 98 GVSDPNSQAGQQGLVEPTQ---------------FARANQAIQMACQSLGEPGCTQAQVLSAATIVAKHTSALCNSCRLA 162 (309)
T ss_dssp HHHSTTCBCCBCCSSCSHH---------------HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccCccccchHHH---------------HHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35788888888877744 2 233333333333333333 444444444444444444444444433
Q ss_pred hccCccHHHHHHH
Q psy11519 100 GGDLKDERRRAQM 112 (150)
Q Consensus 100 q~dLk~~~~rd~l 112 (150)
...-.||.-|.++
T Consensus 163 s~~~~n~~~k~ql 175 (309)
T 2x0c_A 163 SARTANPTAKRQF 175 (309)
T ss_dssp HTTCCCHHHHHHH
T ss_pred hcCcCCchHHHHH
Confidence 3333344444444
No 27
>2jqt_A H-NS/STPA-binding protein 2; CNU, YDGT, replication origin associated, ORIC, protein binding; NMR {Escherichia coli}
Probab=37.80 E-value=22 Score=23.42 Aligned_cols=42 Identities=12% Similarity=0.377 Sum_probs=33.3
Q ss_pred HHHHhhHhhcCChHHHHHHHHHHh-----H-HHHHHHHHHhhhhccCc
Q psy11519 63 SRSLCRLENVTNFTEFVKAFSQFG-----G-EMVELAHVTGERGGDLK 104 (150)
Q Consensus 63 ~~~l~~~~~~~s~~el~~~f~~f~-----~-~m~~l~~~~~~Rq~dLk 104 (150)
.|+|-+++.++|.+-|.+.|.... . +++.+...++.|..||+
T Consensus 4 ~d~L~kfRkc~s~eTLEkv~e~~~y~L~~~~e~~~f~~AaDHRrAEl~ 51 (71)
T 2jqt_A 4 QDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELV 51 (71)
T ss_dssp CCTHHHHHHCCCSHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 456778899999999999885443 2 78888889998888875
No 28
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=32.96 E-value=68 Score=25.83 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=32.0
Q ss_pred hhHHHhHHHhhcChh---hH-hhHhHHHHHHhhHhhcCChHHHHHHHHHHhHHHHHHHH
Q psy11519 40 CLDNIDSLLHLVDPP---SI-DFRSTVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAH 94 (150)
Q Consensus 40 lLs~vtrlLllaD~~---il-~~~~~v~~~l~~~~~~~s~~el~~~f~~f~~~m~~l~~ 94 (150)
|=-.|+|=.|=-|.+ |= ...++|.+.|..+.. +.+.+.++|++||..+-+-.+
T Consensus 104 LpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~--d~e~y~~f~~~fg~~lK~G~~ 160 (260)
T 1usu_A 104 LPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAE--DSEQFEKFYSAFSKNIKLGVH 160 (260)
T ss_dssp CCSCC------CCHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHhhhhcchhc
Confidence 333445544444444 11 124567888887765 788999999999999866655
No 29
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=29.24 E-value=73 Score=27.09 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=27.3
Q ss_pred HhHHHHHHhhHhhcCChHHHHHHHHHHhHHHHHHHH
Q psy11519 59 RSTVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAH 94 (150)
Q Consensus 59 ~~~v~~~l~~~~~~~s~~el~~~f~~f~~~m~~l~~ 94 (150)
.++|.+.|..+-. +.+.+.++|++||..+-+-.+
T Consensus 125 ~kkvl~~L~~la~--~~e~y~kf~~~fg~~lK~G~~ 158 (405)
T 2cge_A 125 VKKLIEAFNEIAE--DSEQFEKFYSAFSKNIKLGVH 158 (405)
T ss_dssp HHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CHHHHHHHHHHhhhhhcchhc
Confidence 4567888877755 688999999999999876655
No 30
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens}
Probab=27.11 E-value=2.4e+02 Score=23.10 Aligned_cols=71 Identities=10% Similarity=0.124 Sum_probs=54.2
Q ss_pred hHhhHhHHHHHHhhH------hhcCChHHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHH
Q psy11519 55 SIDFRSTVSRSLCRL------ENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLL 126 (150)
Q Consensus 55 il~~~~~v~~~l~~~------~~~~s~~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L 126 (150)
||...+........| +. .|..||...-+.|..+-.+|..++..=.....|.+.|.+|....+.+...+.-|
T Consensus 136 II~~AK~MA~mM~~Ms~ftRGg~-kTt~DLI~~AK~IAe~g~~l~k~ar~iA~qCtD~r~K~~LL~~lerIpti~~QL 212 (283)
T 3vf0_A 136 IIAAAKRMALLMAEMSRLVRGGS-GTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQL 212 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHhhhhhHHHHH
Confidence 666655544443222 23 788999999999999999999999999999999999999987776665544444
No 31
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=26.07 E-value=75 Score=25.68 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=27.2
Q ss_pred HhHHHHHHhhHhhcCChHHHHHHHHHHhHHHHHHH
Q psy11519 59 RSTVSRSLCRLENVTNFTEFVKAFSQFGGEMVELA 93 (150)
Q Consensus 59 ~~~v~~~l~~~~~~~s~~el~~~f~~f~~~m~~l~ 93 (150)
.++|.+.|..+- ++.+.+.++|++||..+-+-.
T Consensus 127 ~kkvl~~l~~la--~d~e~Y~~f~~~fg~~lK~G~ 159 (268)
T 3pry_A 127 VKKCLELFSELA--EDKENYKKFYEAFSKNLKLGI 159 (268)
T ss_dssp HHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHhHh
Confidence 456888888887 788999999999999886544
No 32
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A
Probab=23.87 E-value=2.3e+02 Score=21.25 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHhhhHHHHHhhhh
Q psy11519 76 TEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKT 132 (150)
Q Consensus 76 ~el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~~rd~l~aAr~~Lk~~~~~L~ts~kt 132 (150)
+|++...|+.|-++-+|-..++..-..|-+..||+ +..|...|-+-.-=|+++||-
T Consensus 58 eey~~~VK~VGl~LR~Ll~sVd~~~~~lp~s~~rE-Vema~k~L~kDM~eLis~mkl 113 (162)
T 1k04_A 58 EEYVPMVKEVGLALRTLLATVDETIPLLPASTHRE-IEMAQKLLNSDLGELINKMKL 113 (162)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhccCHHhhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888877777666665 445566666666667777765
No 33
>2b0h_A Talin-1; vinculin, helical bundle, VBS, structural protein; NMR {Mus musculus} SCOP: a.24.9.2
Probab=23.59 E-value=2.1e+02 Score=20.70 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=41.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhccCccHH-HHHHHHHHHHHHHhhhHHH
Q psy11519 77 EFVKAFSQFGGEMVELAHVTGERGGDLKDER-RRAQMSAARQVLERSTMLL 126 (150)
Q Consensus 77 el~~~f~~f~~~m~~l~~~~~~Rq~dLk~~~-~rd~l~aAr~~Lk~~~~~L 126 (150)
-+....+++|....+|-..++..|.+-.|+. +|+-..+||.+-++-.-+|
T Consensus 79 ~Ir~~Vq~LG~ac~~lV~~ag~~q~~p~d~~~q~eL~~~aR~VsEkVs~vL 129 (137)
T 2b0h_A 79 HIKHRVQELGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVL 129 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778999999999999999999989988 7777888888887766553
No 34
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=21.68 E-value=92 Score=27.06 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=32.0
Q ss_pred hhhHHHhHHHhhcChh--hH--hhHhHHHHHHhhHhhcCChHHHHHHHHHHhHHHHHHH
Q psy11519 39 YCLDNIDSLLHLVDPP--SI--DFRSTVSRSLCRLENVTNFTEFVKAFSQFGGEMVELA 93 (150)
Q Consensus 39 ~lLs~vtrlLllaD~~--il--~~~~~v~~~l~~~~~~~s~~el~~~f~~f~~~m~~l~ 93 (150)
-|=-.|+|=.|=-|.+ .| ...++|.+.|..+- .+.+.+.++|++||..+-+-.
T Consensus 103 DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la--~d~e~Y~~f~~~fg~~lK~Gi 159 (448)
T 3q6m_A 103 DLPLNISREMLQQSKILKVIRKNLVKKCLELFTELA--EDKENYKKFYEQFSKNIKLGI 159 (448)
T ss_dssp CCC---------CCSHHHHHHHHHHHHHHHHHHHHT--SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHhHHHHhhh
Confidence 4445566666655655 11 13467888888887 888999999999999886544
No 35
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=21.02 E-value=73 Score=19.26 Aligned_cols=10 Identities=30% Similarity=0.647 Sum_probs=6.9
Q ss_pred HHHHHHHhhh
Q psy11519 114 AARQVLERST 123 (150)
Q Consensus 114 aAr~~Lk~~~ 123 (150)
+.|++||++.
T Consensus 41 agreilkkgl 50 (54)
T 3gxq_A 41 AGREILKKGL 50 (54)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6677777753
No 36
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=20.29 E-value=1.6e+02 Score=17.99 Aligned_cols=33 Identities=6% Similarity=0.085 Sum_probs=27.1
Q ss_pred ChhhHhhHhHHHHHHhhHhhcCChHHHHHHHHH
Q psy11519 52 DPPSIDFRSTVSRSLCRLENVTNFTEFVKAFSQ 84 (150)
Q Consensus 52 D~~il~~~~~v~~~l~~~~~~~s~~el~~~f~~ 84 (150)
|..++.+...|..++...+..+.++|+...=.+
T Consensus 4 ~dPL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~N 36 (51)
T 1yzm_A 4 GSPLLQQIHNITSFIRQAKAAGRMDEVRTLQEN 36 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 444889999999999999999999997654333
No 37
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=20.23 E-value=2.1e+02 Score=24.10 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=45.6
Q ss_pred HHHHhhhhhhcCCCcchhccccccc--hhhHHHhHHHhhcChhhHhhHhHHHHHHhhHhhcC--ChHHHHHHHHHHhHHH
Q psy11519 14 SMSLKMCSLSTHSRPAVNRCRLNRP--YCLDNIDSLLHLVDPPSIDFRSTVSRSLCRLENVT--NFTEFVKAFSQFGGEM 89 (150)
Q Consensus 14 ~m~~aa~~f~~dp~s~~~R~~lvra--~lLs~vtrlLllaD~~il~~~~~v~~~l~~~~~~~--s~~el~~~f~~f~~~m 89 (150)
.|-.+-+.++.+|.+...|..++.. .|- ..++.+...|..++.-- ....-|.....+...+
T Consensus 48 ~ff~alq~la~~P~~~~~R~~vl~~a~~La---------------~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qI 112 (463)
T 2d4y_A 48 SFFTSLQTLVSNAEDPAARQALIGKAEGLV---------------NQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQI 112 (463)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567788999999999988877 432 23333333333332211 1222344444555555
Q ss_pred HHHHHHH--------hhhhccCccHHHHHHHHHHHHH
Q psy11519 90 VELAHVT--------GERGGDLKDERRRAQMSAARQV 118 (150)
Q Consensus 90 ~~l~~~~--------~~Rq~dLk~~~~rd~l~aAr~~ 118 (150)
.+|+... +.-.+||. ++||+|..-+..
T Consensus 113 a~LN~qI~~~~~~~~g~~~ndLl--DqRD~ll~eLS~ 147 (463)
T 2d4y_A 113 ANLNDQISRMTGVGAGASPNDLL--DQRDQLVSELNK 147 (463)
T ss_dssp HHHHHHHHHHC--------CHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCCchHhH--HHHHHHHHHHHh
Confidence 5555544 33344565 466776554443
Done!