RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11519
(150 letters)
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus
musculus} SCOP: a.24.9.1 PDB: 1dov_A
Length = 205
Score = 100 bits (251), Expect = 1e-27
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 40 CLDNIDSLLHLVDPPS----IDFRSTVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHV 95
L + LL L D + V + +L N N + + E+ +L +
Sbjct: 75 LLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIM 134
Query: 96 TGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETARQNRDTVF 150
+R +LKD R QM+AAR +L+++ +L T+S+ CL+HPD + NRD ++
Sbjct: 135 AAKRQQELKDVGNRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIY 189
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal
protein, protein-Pro interactions, cell adhesion,
cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A
1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A
3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A
1t01_A
Length = 258
Score = 92.9 bits (230), Expect = 4e-24
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 56 IDFRSTVSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAA 115
I + L E V + V G M ++A + ER +L + R + +
Sbjct: 135 IRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNS 194
Query: 116 RQVLERSTMLLLTSSKTCL-----RHPDSETARQNRDTVF 150
++ +L+++ K + ++ E A +NR+
Sbjct: 195 MNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTV 234
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 7e-04
Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 36/163 (22%)
Query: 11 LTISMSLKMCSLSTHSRPAVNRCRLNRPYCLDNIDSLLHLVDPPSID--FRSTVSRSLCR 68
+ + + +K+ + R V+ + + + D++ PP +D F S + L
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL-------IPPYLDQYFYSHIGHHLKN 483
Query: 69 LENVTNFTEFVKAFSQFGGEMVELAHVT---GERGG------DLK---------DERRRA 110
+E+ T F F F ++ H + G LK D +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 111 QMSAARQVLERSTMLLLTSSKTC-----LRHPDS----ETARQ 144
++A L + L+ S T L D E +Q
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 27.5 bits (60), Expect = 2.2
Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 27/77 (35%)
Query: 30 VNRCRLNRP-YCLDNIDSLLHLVDPPS---IDFRSTVS--------------------RS 65
+ C N P L+ + LL+ +DP D S +
Sbjct: 189 LKNC--NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 66 LCRLENVTNFTEFVKAF 82
L L NV N + AF
Sbjct: 247 LLVLLNVQN-AKAWNAF 262
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.031
Identities = 27/190 (14%), Positives = 47/190 (24%), Gaps = 68/190 (35%)
Query: 2 NDQITSALELTISMSLKMCSLSTHSRPAVNRCRL--------NRPYCLDNID------SL 47
+D+ T+ EL L S ++ Y L+ D L
Sbjct: 51 DDEPTTPAELVGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCY-LEGNDIHALAAKL 108
Query: 48 LHLVDPPSIDF----------RSTVSRSLCR------LENVTNFTEFVKAFSQFGG---- 87
L D + R R + V + + FGG
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG--EGNAQLVAIFGGQGNT 166
Query: 88 -----EMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTC--------- 133
E+ +L GDL + + + L L+ ++
Sbjct: 167 DDYFEELRDLYQTYHVLVGDL--------IKFSAETLSE----LIRTTLDAEKVFTQGLN 214
Query: 134 ----LRHPDS 139
L +P +
Sbjct: 215 ILEWLENPSN 224
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 27.9 bits (63), Expect = 1.3
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 13/94 (13%)
Query: 36 NRPYCLDN-------IDSLLHLVDPPSIDFRSTVSRSLCRLENVTNFTEFVKAFSQFGGE 88
NRP +D +D L V P R + +++ + V
Sbjct: 154 NRPDIIDPAILRPGRLDKTLF-VGLPPPADRLAILKTITKNGTKPPLDADVNL-----EA 207
Query: 89 MVELAHVTGERGGDLKDERRRAQMSAARQVLERS 122
+ G DL R A + A RQ + R
Sbjct: 208 IAGDLRCDCYTGADLSALVREASICALRQEMARQ 241
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; 2.00A {Thermus thermophilus} SCOP:
c.134.1.1
Length = 227
Score = 27.3 bits (61), Expect = 2.0
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 90 VELAHVT-GERGGDLKDERRRAQMSAARQVL 119
+ +T GE G E R +++ A ++L
Sbjct: 32 TGILDLTRGEMGSKGTPEEREKEVAEASRIL 62
>1hbn_A Methyl-coenzyme M reductase I alpha subunit; methanogenesis,
biological methanogenesis, NI-enzyme, oxidoreductase;
HET: MHS AGM MGN F43 TP7; 1.16A
{Methanothermobacterthermautotrophicus} SCOP: a.89.1.1
d.58.31.2 PDB: 1hbm_A* 1hbo_A* 1hbu_A* 3m1v_A* 3m2r_A*
3m2u_A* 3m2v_A* 3m30_A* 3m32_A* 3pot_A* 1mro_A* 1e6v_A*
Length = 549
Score = 26.8 bits (59), Expect = 3.8
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 78 FVKAFSQ-FGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
F+ A + F E GG + ER+ ++A ++V +
Sbjct: 5 FINALKKKFEESPEEKKTTFYTLGGWKQSERKTEFVNAGKEVAAK 49
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein;
HET: OGA; 2.57A {Homo sapiens}
Length = 442
Score = 25.6 bits (55), Expect = 7.5
Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 6/137 (4%)
Query: 16 SLKMCSLSTHSRPAVNRCRLNRPYCLDNIDSLLHLVDPPSIDFRSTVSRSLCRLEN---- 71
+ + STH + + + LD I L+ ++ R+ + R L
Sbjct: 221 TPAGLAHSTHVTISTYQNNSWGDFLLDTISGLVFDTAKEDVELRTGIPRQLLLQVESTTV 280
Query: 72 -VTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSS 130
+ F++ + EL + + + ++ L S
Sbjct: 281 ATRRLSGFLRTLADRLEGTKELL-SSDMKKDFIMHRLPPYSAGDGAELSTPGGKLPRLDS 339
Query: 131 KTCLRHPDSETARQNRD 147
L+ D D
Sbjct: 340 VVRLQFKDHIVLTVLPD 356
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Length = 186
Score = 25.3 bits (55), Expect = 7.6
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 40 CLDNIDSLLHLVDPPSIDFRSTVSR 64
+D ID +++P +T R
Sbjct: 95 VMDEIDEKTWVLEPEKPPRSATARR 119
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR
{Mus musculus}
Length = 131
Score = 25.1 bits (54), Expect = 8.1
Identities = 14/77 (18%), Positives = 31/77 (40%)
Query: 69 LENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLT 128
++ + E V+ +L + D ++ +A ++L +T ++
Sbjct: 33 FSSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVE 92
Query: 129 SSKTCLRHPDSETARQN 145
++K HPDSE +Q
Sbjct: 93 AAKGAAAHPDSEEQQQR 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.131 0.374
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,067,937
Number of extensions: 110993
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 14
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)