RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11519
         (150 letters)



>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 181

 Score =  108 bits (272), Expect = 2e-31
 Identities = 28/89 (31%), Positives = 49/89 (55%)

Query: 62  VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
           V   + +L N  N  +    +     E+ +L  +  +R  +LKD   R QM+AAR +L++
Sbjct: 76  VEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGNRDQMAAARGILQK 135

Query: 122 STMLLLTSSKTCLRHPDSETARQNRDTVF 150
           +  +L T+S+ CL+HPD    + NRD ++
Sbjct: 136 NVPILYTASQACLQHPDVAAYKANRDLIY 164


>d1t01a2 a.24.9.1 (A:126-252) Vinculin {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 127

 Score =  103 bits (259), Expect = 5e-30
 Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 62  VSRSLCRLENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
           +   L   E V    + V      G  M ++A +  ER  +L  +  R  +  +   ++ 
Sbjct: 16  ILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKE 75

Query: 122 STMLLLTSSKTCLRHPDS-----ETARQNRDTVF 150
              +L+++ K  +   ++     E A +NR+   
Sbjct: 76  LLPVLISAMKIFVTTKNTKSQGIEEALKNRNFTV 109


>d1b35a_ b.121.4.1 (A:) Insect picorna-like virus coat proteins
          {Cricket paralysis virus [TaxId: 12136]}
          Length = 260

 Score = 30.0 bits (67), Expect = 0.083
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 48 LHLVDPPSIDFRS----TVSRSLCRLENVTNFTEFVKAFSQFGG 87
           H V P SID          +++C  E V +  + +K F  FG 
Sbjct: 14 QHGVHPISIDTHRISNNWSPQAMCIGEKVVSIRQLIKRFGIFGD 57


>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 125

 Score = 25.5 bits (56), Expect = 2.1
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 91  ELAHVTGERGGDLKDERRRAQMSAARQVLERSTMLLLTSSKTCLRHPDSETAR 143
            L  V  E     +D+  +  M  A   +E +   L+ +++     P S  AR
Sbjct: 53  NLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVRAAQMLQADPYSVPAR 105


>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 138

 Score = 25.2 bits (55), Expect = 2.9
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 13/87 (14%)

Query: 70  ENVTNFTEFVKAFSQFGGEMVELAHVTGERGGDL------------KDERRRAQMSAARQ 117
           + +   TE + +     GEMV  A +  +   DL              E  R  +SAA+ 
Sbjct: 52  DTILTVTENIFSSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKI 111

Query: 118 VLERSTMLLLTSSKTCLRHPDSETARQ 144
           + + +T  ++ ++K    HPDSE  +Q
Sbjct: 112 LAD-ATAKMVEAAKGAAAHPDSEEQQQ 137


>d1hbna2 d.58.31.2 (A:2-269) Alpha chain {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 268

 Score = 24.9 bits (54), Expect = 5.1
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 78  FVKAFSQ-FGGEMVELAHVTGERGGDLKDERRRAQMSAARQVLER 121
           F+ A  + F     E        GG  + ER+   ++A ++V  +
Sbjct: 5   FINALKKKFEESPEEKKTTFYTLGGWKQSERKTEFVNAGKEVAAK 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 483,245
Number of extensions: 19719
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 9
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)