BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1152
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 11/178 (6%)
Query: 7 IQSRSSQQIAVGTQHHIDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGSASQLTSFTI 66
++ R Q G V+ I + G+RGL++G V R + + ++L ++ +
Sbjct: 128 VKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDL 187
Query: 67 FKSYFKRHKIFSQNEDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQGVDQHGKGLLY 126
K + + + D + F ++ G + +P D + TR N + Q Y
Sbjct: 188 IKDTLLKANLMT---DDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQ------Y 238
Query: 127 KSYMDCVRQTFKQEGIQGLYKGILPCYLRIGPHTVLSLVFWDML-RGIQAKY-SKPPP 182
S C ++EG + YKG +P +LR+G V+ V ++ L R + A Y S+ P
Sbjct: 239 HSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAP 296
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 8/165 (4%)
Query: 8 QSRSSQQIAVGT-QHHIDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGSASQLTSFTI 66
++R + + G Q G+ + KI+ G+RGL++G +V +++ A+ +
Sbjct: 137 RTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDT 196
Query: 67 FKSYFKRHKIFSQNEDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQGVDQHGKGLLY 126
K K N I++ A + V + PFDT+ R+ Q + G ++Y
Sbjct: 197 AKGMLPDPK----NVHIIVSWMIAQTVTAV-AGLVSYPFDTVRRRMMMQS-GRKGADIMY 250
Query: 127 KSYMDCVRQTFKQEGIQGLYKGILPCYLRIGPHTVLSLVFWDMLR 171
+DC R+ K EG + +KG LR G LV +D ++
Sbjct: 251 TGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFVLVLYDEIK 294
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 17/156 (10%)
Query: 1 SKVKTHIQSR-SSQQIAVGTQHHIDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGSAS 59
+VK +Q + +S+QI+ Q+ GI+ + +I + G +RG L VIR A
Sbjct: 29 ERVKLLLQVQHASKQISAEKQYK--GIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQAL 86
Query: 60 QLTSFTIFKSYF----KRHKIFSQNEDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQ 115
+K F RHK F + A+ G F+ P D TRL
Sbjct: 87 NFAFKDKYKQIFLGGVDRHKQFWR---YFAGNLASGGAAGATSLCFVYPLDFARTRL--- 140
Query: 116 GVDQHGKGLLYKSYM---DCVRQTFKQEGIQGLYKG 148
GKG + + +C+ + FK +G++GLY+G
Sbjct: 141 -AADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQG 175
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 78 SQNEDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQ-GVDQHGKGLLYKSYMDCVRQT 136
S S + F A + +AP + + L Q Q YK +DCV +
Sbjct: 1 SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 60
Query: 137 FKQEGIQGLYKGILPCYLRIGPHTVLSLVFWDMLRGI 173
K++G ++G L +R P L+ F D + I
Sbjct: 61 PKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQI 97
>pdb|2OVD|A Chain A, Crystal Structure Of Human Complement Protein C8gamma With
Laurate
pdb|2OVE|A Chain A, Crystal Structure Of Recombinant Human Complement Protein
C8gamma
Length = 182
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 16/86 (18%)
Query: 15 IAVGTQHHIDGIVKTLGKIYGQFGVRGLF----RGALGAVIRVMVGSASQLTSFTIFKSY 70
+AV T +DGI + ++YG GV G F RGA GAV V+ + Q SF + Y
Sbjct: 64 MAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARGARGAVHVVVAETDYQ--SFAVL--Y 119
Query: 71 FKRH-----KIFSQN---EDSIINTF 88
+R K+++++ DS+++ F
Sbjct: 120 LERAGQLSVKLYARSLPVSDSVLSGF 145
>pdb|1IW2|A Chain A, X-Ray Structure Of Human Complement Protein C8gamma At
Ph7.O
pdb|1LF7|A Chain A, Crystal Structure Of Human Complement Protein C8gamma At
1.2 A Resolution
Length = 182
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 16/86 (18%)
Query: 15 IAVGTQHHIDGIVKTLGKIYGQFGVRGLF----RGALGAVIRVMVGSASQLTSFTIFKSY 70
+AV T +DGI + ++YG GV G F RGA GAV V+ + Q SF + Y
Sbjct: 64 MAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARGARGAVHVVVAETDYQ--SFAVL--Y 119
Query: 71 FKRH-----KIFSQN---EDSIINTF 88
+R K+++++ DS+++ F
Sbjct: 120 LERAGQLSVKLYARSLPVSDSVLSGF 145
>pdb|2QOS|C Chain C, Crystal Structure Of Complement Protein C8 In Complex With
A Peptide Containing The C8 Binding Site On C8
Length = 173
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 16/86 (18%)
Query: 15 IAVGTQHHIDGIVKTLGKIYGQFGVRGLF----RGALGAVIRVMVGSASQLTSFTIFKSY 70
+AV T +DGI + ++YG GV G F RGA GAV V+ + Q SF + Y
Sbjct: 55 MAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARGARGAVHVVVAETDYQ--SFAVL--Y 110
Query: 71 FKRH-----KIFSQN---EDSIINTF 88
+R K+++++ DS+++ F
Sbjct: 111 LERAGQLSVKLYARSLPVSDSVLSGF 136
>pdb|2RD7|C Chain C, Human Complement Membrane Attack Proteins Share A Common
Fold With Bacterial Cytolysins
Length = 184
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 15 IAVGTQHHIDGIVKTLGKIYGQFGVRGLF----RGALGAVIRVMVGSASQLTSFTIFKSY 70
+AV T +DGI + ++YG GV G F R A GAV V+ + Q SF + Y
Sbjct: 66 MAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARDARGAVHVVVAETDYQ--SFAVL--Y 121
Query: 71 FKRH-----KIFSQN---EDSIINTF 88
+R K+++++ DS+++ F
Sbjct: 122 LERAGQLSVKLYARSLPVSDSVLSGF 147
>pdb|3OJY|C Chain C, Crystal Structure Of Human Complement Component C8
Length = 182
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 15 IAVGTQHHIDGIVKTLGKIYGQFGVRGLF----RGALGAVIRVMVGSASQLTSFTIFKSY 70
+AV T +DGI + ++YG GV G F R A GAV V+ + Q SF + Y
Sbjct: 64 MAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARDARGAVHVVVAETDYQ--SFAVL--Y 119
Query: 71 FKRH-----KIFSQN---EDSIINTF 88
+R K+++++ DS+++ F
Sbjct: 120 LERAGQLSVKLYARSLPVSDSVLSGF 145
>pdb|3AH5|A Chain A, Crystal Structure Of Flavin Dependent Thymidylate
Synthase Thyx From Helicobacter Pylori Complexed With
Fad And Dump
pdb|3AH5|B Chain B, Crystal Structure Of Flavin Dependent Thymidylate
Synthase Thyx From Helicobacter Pylori Complexed With
Fad And Dump
pdb|3AH5|C Chain C, Crystal Structure Of Flavin Dependent Thymidylate
Synthase Thyx From Helicobacter Pylori Complexed With
Fad And Dump
pdb|3AH5|D Chain D, Crystal Structure Of Flavin Dependent Thymidylate
Synthase Thyx From Helicobacter Pylori Complexed With
Fad And Dump
pdb|3AH5|E Chain E, Crystal Structure Of Flavin Dependent Thymidylate
Synthase Thyx From Helicobacter Pylori Complexed With
Fad And Dump
pdb|3AH5|F Chain F, Crystal Structure Of Flavin Dependent Thymidylate
Synthase Thyx From Helicobacter Pylori Complexed With
Fad And Dump
Length = 216
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 29 TLGKIYGQFGVRGLFRGALGAVIRVMVGSAS 59
TL +Y F ++GL RGAL + R + S S
Sbjct: 51 TLEHLYYNFEIKGLSRGALQELSRHRIASLS 81
>pdb|3N3Y|A Chain A, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
pdb|3N3Y|B Chain B, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
pdb|3N3Y|C Chain C, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
pdb|3N3Y|D Chain D, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
Length = 216
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 29 TLGKIYGQFGVRGLFRGALGAVIRVMVGSAS 59
TL +Y F ++GL RGAL + R + S S
Sbjct: 59 TLEHLYYNFEIKGLSRGALQELSRHRIASLS 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,099,254
Number of Sequences: 62578
Number of extensions: 187179
Number of successful extensions: 551
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 12
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)