Query psy1152
Match_columns 186
No_of_seqs 115 out of 1177
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 20:30:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 8.4E-37 2.9E-41 237.1 11.3 163 1-176 126-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 4.5E-36 1.5E-40 232.4 15.0 175 1-177 29-204 (297)
3 1okc_A ADP, ATP carrier protei 100.0 8E-36 2.7E-40 231.0 12.0 164 1-174 134-297 (297)
4 2lck_A Mitochondrial uncouplin 100.0 2.9E-35 1E-39 228.4 14.5 172 1-178 23-196 (303)
5 1pp9_G Ubiquinol-cytochrome C 59.8 23 0.0008 21.1 4.9 42 140-181 32-73 (81)
6 3tgu_G UQCRQ, mitochondrial ub 59.5 14 0.00047 22.2 3.8 41 140-180 32-72 (81)
7 2acm_A Mucin-1; auto-catalytic 34.7 9.6 0.00033 21.3 0.3 20 24-43 40-59 (66)
8 3cx5_H Cytochrome B-C1 complex 19.8 69 0.0024 19.6 2.2 39 140-178 42-80 (93)
9 2khf_A PLNJ; anti-microbial, b 19.5 37 0.0013 14.8 0.7 13 143-155 12-24 (26)
10 1y9i_A Low temperature require 18.4 1.4E+02 0.0046 20.7 3.7 45 55-99 111-157 (178)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8.4e-37 Score=237.11 Aligned_cols=163 Identities=23% Similarity=0.473 Sum_probs=145.2
Q ss_pred CceeeeeecccccccccCcccCCCcHHHHHHHHHhhhccchhcccchhhHHHHhhhhhhHHHHHHHHHHHHhhhcccCCC
Q psy1152 1 SKVKTHIQSRSSQQIAVGTQHHIDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGSASQLTSFTIFKSYFKRHKIFSQN 80 (186)
Q Consensus 1 e~vk~rlQ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (186)
|+||+|||++... +....|.+.++++++|+++||++|||+|+.|++++.++..+++|.+||.+++.+.+....
T Consensus 126 d~vktrlq~~~~~----~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~--- 198 (303)
T 2lck_A 126 DVVKVRFQAQARA----GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM--- 198 (303)
T ss_dssp HHHHHHHHHSCSC----CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSC---
T ss_pred HHHHHHHhccccc----CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---
Confidence 7899999998532 223468999999999999999999999999999999999999999999999988754321
Q ss_pred ccchHHHHHHHHHHHHHHhhhhccHHHHHHHHhhcCccCCCCCcccCCHHHHHHHHHHhhhhhhhhcchhhHHHhHhhHH
Q psy1152 81 EDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQGVDQHGKGLLYKSYMDCVRQTFKQEGIQGLYKGILPCYLRIGPHT 160 (186)
Q Consensus 81 ~~~~~~~~~~g~~ag~~~~~i~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~ 160 (186)
..+....+++|++||++++++++|+|+||+|||.+.. ..|+++++|+++|+++||++|||||+.|++++.+|..
T Consensus 199 ~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~ 272 (303)
T 2lck_A 199 TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWN 272 (303)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHH
Confidence 2335788999999999999999999999999999842 2589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy1152 161 VLSLVFWDMLRGIQAK 176 (186)
Q Consensus 161 ~i~~~~y~~~~~~~~~ 176 (186)
+++|.+||.+++++.+
T Consensus 273 ~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 273 VVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988754
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.5e-36 Score=232.37 Aligned_cols=175 Identities=20% Similarity=0.283 Sum_probs=146.7
Q ss_pred CceeeeeecccccccccCcccCCCcHHHHHHHHHhhhccchhcccchhhHHHHhhhhhhHHHHHHHHHHHHhhhcccCCC
Q psy1152 1 SKVKTHIQSRSSQQIAVGTQHHIDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGSASQLTSFTIFKSYFKRHKIFSQN 80 (186)
Q Consensus 1 e~vk~rlQ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (186)
|+||||||++..... ......|+++++++++|+++||++|||+|+.+++++.++..+++|.+||.+++.+.......+.
T Consensus 29 d~vKtrlQ~~~~~~~-~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~ 107 (297)
T 1okc_A 29 ERVKLLLQVQHASKQ-ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQ 107 (297)
T ss_dssp HHHHHHHHHGGGCSS-CCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTC
T ss_pred HHHHHHHHhcccccc-cccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccc
Confidence 789999999853211 1123468999999999999999999999999999999999999999999999965432211111
Q ss_pred -ccchHHHHHHHHHHHHHHhhhhccHHHHHHHHhhcCccCCCCCcccCCHHHHHHHHHHhhhhhhhhcchhhHHHhHhhH
Q psy1152 81 -EDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQGVDQHGKGLLYKSYMDCVRQTFKQEGIQGLYKGILPCYLRIGPH 159 (186)
Q Consensus 81 -~~~~~~~~~~g~~ag~~~~~i~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~ 159 (186)
.......+++|+++|+++.++++|+|+||+|+|.+.... +....|+++++++++|+++||++|||||+.+++++.+|.
T Consensus 108 ~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 186 (297)
T 1okc_A 108 FWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIY 186 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHH
Confidence 123467899999999999999999999999999985322 223478999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy1152 160 TVLSLVFWDMLRGIQAKY 177 (186)
Q Consensus 160 ~~i~~~~y~~~~~~~~~~ 177 (186)
.+++|.+||.+++++.+.
T Consensus 187 ~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 187 RAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHHHHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 999999999999987654
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=8e-36 Score=230.97 Aligned_cols=164 Identities=23% Similarity=0.384 Sum_probs=138.1
Q ss_pred CceeeeeecccccccccCcccCCCcHHHHHHHHHhhhccchhcccchhhHHHHhhhhhhHHHHHHHHHHHHhhhcccCCC
Q psy1152 1 SKVKTHIQSRSSQQIAVGTQHHIDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGSASQLTSFTIFKSYFKRHKIFSQN 80 (186)
Q Consensus 1 e~vk~rlQ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (186)
|+||+|||++.... +....|+++++++++|+++||++|||+|+.|++++.++..+++|.+||.+++.+.+..
T Consensus 134 d~vktrlq~~~~~~---~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~----- 205 (297)
T 1okc_A 134 DFARTRLAADVGKG---AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK----- 205 (297)
T ss_dssp HHHHHHHHHCCCSS---TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG-----
T ss_pred HHHHHHHhccccCC---CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC-----
Confidence 78999999984321 2235689999999999999999999999999999999999999999999999765422
Q ss_pred ccchHHHHHHHHHHHHHHhhhhccHHHHHHHHhhcCccCCCCCcccCCHHHHHHHHHHhhhhhhhhcchhhHHHhHhhHH
Q psy1152 81 EDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQGVDQHGKGLLYKSYMDCVRQTFKQEGIQGLYKGILPCYLRIGPHT 160 (186)
Q Consensus 81 ~~~~~~~~~~g~~ag~~~~~i~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~ 160 (186)
..+....+++|+++|++++++++|+|+||+|||.+.... +....|+++++|+++|+++||++|||||+.|++++. +..
T Consensus 206 ~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~-~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~ 283 (297)
T 1okc_A 206 NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK-GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGG 283 (297)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC-GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHH
T ss_pred CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC-CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccc
Confidence 223577899999999999999999999999999975322 122478999999999999999999999999999996 578
Q ss_pred HHHHHHHHHHHHHH
Q psy1152 161 VLSLVFWDMLRGIQ 174 (186)
Q Consensus 161 ~i~~~~y~~~~~~~ 174 (186)
++.|.+||.+++++
T Consensus 284 ~~~f~~ye~~k~~l 297 (297)
T 1okc_A 284 AFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHTC----
T ss_pred eeeehHHHHHHhhC
Confidence 99999999988764
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.9e-35 Score=228.44 Aligned_cols=172 Identities=21% Similarity=0.338 Sum_probs=149.0
Q ss_pred Cceeeeeecccccccc--cCcccCCCcHHHHHHHHHhhhccchhcccchhhHHHHhhhhhhHHHHHHHHHHHHhhhcccC
Q psy1152 1 SKVKTHIQSRSSQQIA--VGTQHHIDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGSASQLTSFTIFKSYFKRHKIFS 78 (186)
Q Consensus 1 e~vk~rlQ~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (186)
|+||+|||++...... ......|+++++++++|+++||+++||+|+.+++++.++..+++|.+||.+++.+.+...
T Consensus 23 d~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~-- 100 (303)
T 2lck_A 23 DTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE-- 100 (303)
T ss_dssp HHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCS--
T ss_pred HHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--
Confidence 7899999998542110 011346899999999999999999999999999999999999999999999998865421
Q ss_pred CCccchHHHHHHHHHHHHHHhhhhccHHHHHHHHhhcCccCCCCCcccCCHHHHHHHHHHhhhhhhhhcchhhHHHhHhh
Q psy1152 79 QNEDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQGVDQHGKGLLYKSYMDCVRQTFKQEGIQGLYKGILPCYLRIGP 158 (186)
Q Consensus 79 ~~~~~~~~~~~~g~~ag~~~~~i~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~ 158 (186)
..+.+..+++|+++|+++.++++|+|+||+|+|.+... +....|+++++++++|+++||++|||||+.+++++.+|
T Consensus 101 --~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~ 176 (303)
T 2lck_A 101 --HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA--GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAI 176 (303)
T ss_dssp --SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHH
Confidence 24468899999999999999999999999999998542 12347899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q psy1152 159 HTVLSLVFWDMLRGIQAKYS 178 (186)
Q Consensus 159 ~~~i~~~~y~~~~~~~~~~~ 178 (186)
..+++|.+||.+++++.+..
T Consensus 177 ~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 177 VNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999987754
No 5
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=59.85 E-value=23 Score=21.13 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=34.3
Q ss_pred hhhhhhhcchhhHHHhHhhHHHHHHHHHHHHHHHHhhcCCCC
Q psy1152 140 EGIQGLYKGILPCYLRIGPHTVLSLVFWDMLRGIQAKYSKPP 181 (186)
Q Consensus 140 ~G~~glyrG~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~ 181 (186)
.|+...+|-+.-+++..+|..++.+.+|+..++.-...+...
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKn 73 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKN 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCC
Confidence 577777888888889999999999999999988876655443
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=59.50 E-value=14 Score=22.19 Aligned_cols=41 Identities=2% Similarity=0.182 Sum_probs=31.9
Q ss_pred hhhhhhhcchhhHHHhHhhHHHHHHHHHHHHHHHHhhcCCC
Q psy1152 140 EGIQGLYKGILPCYLRIGPHTVLSLVFWDMLRGIQAKYSKP 180 (186)
Q Consensus 140 ~G~~glyrG~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~ 180 (186)
.|+...+|-+..+++..+|..++...+|+..++.-...+..
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rK 72 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRK 72 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35556666677888899999999999999998876655433
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=34.73 E-value=9.6 Score=21.29 Aligned_cols=20 Identities=35% Similarity=0.384 Sum_probs=17.7
Q ss_pred CcHHHHHHHHHhhhccchhc
Q psy1152 24 DGIVKTLGKIYGQFGVRGLF 43 (186)
Q Consensus 24 ~~~~~~~~~i~~~~G~~~ly 43 (186)
+++...+-+|++++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 57888999999999998886
No 8
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=19.83 E-value=69 Score=19.63 Aligned_cols=39 Identities=5% Similarity=0.076 Sum_probs=30.8
Q ss_pred hhhhhhhcchhhHHHhHhhHHHHHHHHHHHHHHHHhhcC
Q psy1152 140 EGIQGLYKGILPCYLRIGPHTVLSLVFWDMLRGIQAKYS 178 (186)
Q Consensus 140 ~G~~glyrG~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~ 178 (186)
+|+...+|-+.-+++..+|..++...+|+..++.-...+
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l~ 80 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLY 80 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHHh
Confidence 466677777888888899999999999999887654433
No 9
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=19.54 E-value=37 Score=14.83 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=8.0
Q ss_pred hhhhcchhhHHHh
Q psy1152 143 QGLYKGILPCYLR 155 (186)
Q Consensus 143 ~glyrG~~~~~~~ 155 (186)
+|||.|-.-+.++
T Consensus 12 kgfydgeagrair 24 (26)
T 2khf_A 12 KGFYDGEAGRAIR 24 (26)
T ss_dssp HHHTTTHHHHTTT
T ss_pred hhcccchhhhHhh
Confidence 3788876655443
No 10
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=18.39 E-value=1.4e+02 Score=20.74 Aligned_cols=45 Identities=2% Similarity=-0.105 Sum_probs=27.1
Q ss_pred hhhhhHHHHHHHHHHHHhhhccc--CCCccchHHHHHHHHHHHHHHh
Q psy1152 55 VGSASQLTSFTIFKSYFKRHKIF--SQNEDSIINTFAASMIGGVFIA 99 (186)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~ag~~~~ 99 (186)
...++.|..+|..|.+....... +..-..+...+++|..|+++..
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~ 157 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASR 157 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHH
Confidence 45667788888888765543321 1222234777777777776553
Done!