RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1152
         (186 letters)



>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein. 
          Length = 96

 Score = 76.5 bits (189), Expect = 1e-18
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 3/99 (3%)

Query: 80  NEDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQGVDQHGKGLLYKSYMDCVRQTFKQ 139
           +  S + +  A  I G   A    P D + TRL +       K   YK  +DC ++ +K+
Sbjct: 1   SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRK---YKGILDCFKKIYKE 57

Query: 140 EGIQGLYKGILPCYLRIGPHTVLSLVFWDMLRGIQAKYS 178
           EGI+GLYKG+LP  LR+ P   +    ++ L+ +  K  
Sbjct: 58  EGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96



 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 3  VKTHIQSRSSQQIAVGTQHHIDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGSASQLT 62
          VKT +QS ++            GI+    KIY + G+RGL++G L  ++RV   +A    
Sbjct: 29 VKTRLQSSAAGGSRKYK-----GILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFG 83

Query: 63 SFTIFKSYFKRHK 75
          ++   K    +  
Sbjct: 84 TYETLKKLLLKKL 96


>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
           Provisional.
          Length = 300

 Score = 61.7 bits (150), Expect = 9e-12
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 5/164 (3%)

Query: 8   QSRSSQQIAVGTQHHIDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGSASQLTSFTIF 67
           ++R +  I  G      G+   L KI  Q G   L++G   +V  ++V   +    +   
Sbjct: 138 RTRLASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSA 197

Query: 68  KSYFKRHKIFSQNEDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQGVDQHGKGLLYK 127
           K+        +    +I+  +A +    +   +   PFDT+  R+      +    + Y 
Sbjct: 198 KALLFG----NDKNTNILYKWAVAQTVTILAGLISYPFDTVRRRMMMMSGRKAKSEIQYT 253

Query: 128 SYMDCVRQTFKQEGIQGLYKGILPCYLRIGPHTVLSLVFWDMLR 171
             +DC ++  K EG+ G +KG     LR G    L LVF+D L+
Sbjct: 254 GTLDCWKKILKNEGLGGFFKGAWANVLR-GAGGALVLVFYDELQ 296



 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 46/155 (29%), Positives = 68/155 (43%), Gaps = 17/155 (10%)

Query: 2   KVKTHIQSRSS-QQIAVGTQHHIDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGSASQ 60
           +VK  IQ++ S  +I  G      GIV    ++  + GV  L+RG    VIR      +Q
Sbjct: 30  RVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQGVLSLWRGNTANVIRYF---PTQ 86

Query: 61  LTSFTIFKSYFKRHKIFSQNEDSIINTFAASMI-GGVFIAI---FMAPFDTISTRLYN-- 114
             +F  FK YFK        +      F  +++ GG+  A     + P D   TRL +  
Sbjct: 87  AFNFA-FKDYFKNMFPKYNQKTDFWKFFGVNILSGGLAGASSLLIVYPLDFARTRLASDI 145

Query: 115 -QGVDQHGKGLLYKSYMDCVRQTFKQEGIQGLYKG 148
            +G D+   GL      DC+ +  KQ G   LY+G
Sbjct: 146 GKGGDREFTGLF-----DCLMKISKQTGFLSLYQG 175



 Score = 35.9 bits (83), Expect = 0.006
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 82  DSIINTFAASMI-GGVFIAI---FMAPFDTISTRLYNQGVD---QHGKGLLYKSYMDCVR 134
                 FA   + GG+  AI    +AP + +   +  Q      + GK   Y   ++C R
Sbjct: 1   MDKKTNFATDFLMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFR 60

Query: 135 QTFKQEGIQGLYKGILPCYLRIGPHTVLSLVFWDMLRGIQAKYSK 179
           +  K++G+  L++G     +R  P    +  F D  + +  KY++
Sbjct: 61  RVSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQ 105


>gnl|CDD|182753 PRK10814, PRK10814, outer membrane-specific lipoprotein transporter
           subunit LolC; Provisional.
          Length = 399

 Score = 31.2 bits (71), Expect = 0.24
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 15/59 (25%)

Query: 32  KIYGQFGVRGLFRGALGAVIRVMVGSASQLTSFTIFKSYFKRHKIFSQNEDSIINTFAA 90
           ++ GQ GV+       G  IR+MV SASQ T            +I SQ   ++I TFAA
Sbjct: 149 QLAGQLGVK------RGDQIRLMVPSASQFTPMG---------RIPSQRLFTVIGTFAA 192


>gnl|CDD|233117 TIGR00759, aceE, pyruvate dehydrogenase E1 component, homodimeric
           type.  Most members of this family are pyruvate
           dehydrogenase complex, E1 component. Note: this family
           was classified as subfamily rather than equivalog
           because it includes a counterexample from Pseudomonas
           putida, MdeB, that is active as an E1 component of an
           alpha-ketoglutarate dehydrogenase complex rather than a
           pyruvate dehydrogase complex. The second pyruvate
           dehydrogenase complex E1 protein from Alcaligenes
           eutrophus, PdhE, complements an aceE mutant of E. coli
           but is not part of a pyruvate dehydrogenase complex
           operon, is more similar to the Pseudomonas putida MdeB
           than to E. coli AceE, and may have also have a different
           primary specificity.
          Length = 885

 Score = 29.7 bits (67), Expect = 0.84
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 23  IDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGS 57
           +DG V+  GKI  +     LFRGA   VI+V+ GS
Sbjct: 261 LDGPVRGNGKIIQEL--ESLFRGAGWNVIKVLWGS 293


>gnl|CDD|192254 pfam09333, ATG_C, ATG C terminal domain.  ATG2 (also known as
          Apg2) is a peripheral membrane protein. It functions in
          both cytoplasm to vacuole targeting and autophagy.
          Length = 98

 Score = 27.6 bits (62), Expect = 1.8
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 24 DGIVKTLGKIYGQFG----VRGLFRGALGAVIRVMVGSASQLTSFT 65
          D ++    +++   G    V  + + A  AVIR ++G A++  S T
Sbjct: 33 DALIAAPSEVHESKGAQGAVGAVLKAAPIAVIRPIIG-ATEAVSKT 77


>gnl|CDD|225329 COG2609, AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1)
           component [Energy production and conversion].
          Length = 887

 Score = 28.5 bits (64), Expect = 2.5
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 23  IDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGS 57
           +DG V+  GKI  +    G+FRGA   VI+V+ G 
Sbjct: 264 LDGPVRGNGKIIQELE--GIFRGAGWNVIKVIWGR 296


>gnl|CDD|183626 PRK12618, flgA, flagellar basal body P-ring biosynthesis protein
           FlgA; Reviewed.
          Length = 141

 Score = 27.0 bits (60), Expect = 4.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 40  RGLFRGALGAVIRVM 54
           R L RG +G  IRVM
Sbjct: 104 RALSRGGVGDEIRVM 118


>gnl|CDD|238975 cd02017, TPP_E1_EcPDC_like, Thiamine pyrophosphate (TPP) family, E1
           of E. coli PDC-like subfamily, TPP-binding module;
           composed of proteins similar to the E1 component of the
           Escherichia coli pyruvate dehydrogenase multienzyme
           complex (PDC). PDC catalyzes the oxidative
           decarboxylation of pyruvate and the subsequent
           acetylation of coenzyme A to acetyl-CoA. The E1
           component of PDC catalyzes the first step of the
           multistep process, using TPP and a divalent cation as
           cofactors. E. coli PDC is a homodimeric enzyme.
          Length = 386

 Score = 26.9 bits (60), Expect = 7.2
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 23  IDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGS 57
           +DG V+  GKI  +    G+FRGA   VI+V+ GS
Sbjct: 190 LDGPVRGNGKIIQEL--EGIFRGAGWNVIKVIWGS 222


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,181,306
Number of extensions: 840268
Number of successful extensions: 1099
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1095
Number of HSP's successfully gapped: 37
Length of query: 186
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 95
Effective length of database: 6,901,388
Effective search space: 655631860
Effective search space used: 655631860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.4 bits)