RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1152
(186 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 174 bits (442), Expect = 2e-54
Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 13/184 (7%)
Query: 3 VKTHIQSRSSQQIAVGTQHHIDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGSASQLT 62
VK Q+ Q G V+ I + G+RGL++G V R + + ++L
Sbjct: 128 VKVRFQA----QARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELV 183
Query: 63 SFTIFKSYFKRHKIFSQNEDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQGVDQHGK 122
++ + K + + D + F ++ G + +P D + TR N + Q
Sbjct: 184 TYDLIKDTLLKANLM---TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQ--- 237
Query: 123 GLLYKSYMDCVRQTFKQEGIQGLYKGILPCYLRIGPHTVLSLVFWDMLRGIQAKYSKPPP 182
Y S C ++EG + YKG +P +LR+G V+ V ++ L+ +
Sbjct: 238 ---YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSRE 294
Query: 183 LLTT 186
Sbjct: 295 APFH 298
Score = 83.5 bits (207), Expect = 9e-20
Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 8/171 (4%)
Query: 3 VKTHIQ--SRSSQQIAVGTQHHIDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGSASQ 60
K +Q S + G++ T+ + G R L+ G + + R M ++ +
Sbjct: 25 AKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVR 84
Query: 61 LTSFTIFKSYFKRHKIFSQNEDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQGVDQH 120
+ + K ++ + I + A G P D + R Q +
Sbjct: 85 IGLYDSVKQFYTKGS----EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQA--RA 138
Query: 121 GKGLLYKSYMDCVRQTFKQEGIQGLYKGILPCYLRIGPHTVLSLVFWDMLR 171
G G Y+S ++ + ++EGI+GL+KG P R LV +D+++
Sbjct: 139 GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIK 189
Score = 67.3 bits (165), Expect = 5e-14
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 4/103 (3%)
Query: 88 FAASMIGGVFIAIFMAPFDTISTRLYNQG----VDQHGKGLLYKSYMDCVRQTFKQEGIQ 143
F + + P DT RL QG + + Y+ + + + EG +
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 144 GLYKGILPCYLRIGPHTVLSLVFWDMLRGIQAKYSKPPPLLTT 186
LY G++ R + + +D ++ K S+ + +
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSR 107
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 105 bits (264), Expect = 5e-28
Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 3/184 (1%)
Query: 3 VKTHIQSRSSQQIAVGTQHHIDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGSASQLT 62
VK +Q + + + + + GI+ + +I + G +RG L VIR A
Sbjct: 31 VKLLLQVQHASKQISAEKQY-KGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFA 89
Query: 63 SFTIFKSYFKRHK-IFSQNEDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQGVDQHG 121
+K F Q A+ G F+ P D TRL
Sbjct: 90 FKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAA 149
Query: 122 KGLLYKSYMDCVRQTFKQEGIQGLYKGILPCYLRIGPHTVLSLVFWDMLRGIQAKYSKPP 181
+ + +C+ + FK +G++GLY+G I + +D +G+
Sbjct: 150 QRE-FTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVH 208
Query: 182 PLLT 185
+++
Sbjct: 209 IIVS 212
Score = 96.2 bits (240), Expect = 1e-24
Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 10/171 (5%)
Query: 3 VKTHIQSRSSQQIAVGTQHHIDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGSASQLT 62
+T + + + Q G+ + KI+ G+RGL++G +V +++ A+
Sbjct: 136 ARTRLAADVGKG---AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFG 192
Query: 63 SFTIFKSYFKRHKIFSQNEDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQGVDQHGK 122
+ K K II ++ + + PFDT+ R+ Q + G
Sbjct: 193 VYDTAKGMLPDPK-----NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSG-RKGA 246
Query: 123 GLLYKSYMDCVRQTFKQEGIQGLYKGILPCYLRIGPHTVLSLVFWDMLRGI 173
++Y +DC R+ K EG + +KG LR LV +D ++
Sbjct: 247 DIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDEIKKF 296
Score = 56.5 bits (137), Expect = 4e-10
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 78 SQNEDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQGV-DQHGKGLLYKSYMDCVRQT 136
S S + F A + +AP + + L Q Q YK +DCV +
Sbjct: 1 SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 60
Query: 137 FKQEGIQGLYKGILPCYLRIGPHTVLSLVFWDMLRGI 173
K++G ++G L +R P L+ F D + I
Sbjct: 61 PKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQI 97
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.001
Identities = 26/171 (15%), Positives = 46/171 (26%), Gaps = 57/171 (33%)
Query: 37 FGVRGLFRGALGAVIR-----------------------VMVGSASQLTSFTIF------ 67
+ L + + + V+ G L +
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 68 KSYFKRHKI-FSQNEDSIINTFAASMIGGVFIAIFMAPF---------DTISTRLYNQGV 117
S + +I FS+ + N F+ + +PF D I+ L V
Sbjct: 399 PSGLDQSRIPFSERKLKFSN---------RFLPVA-SPFHSHLLVPASDLINKDLVKNNV 448
Query: 118 DQHGKGLLYKSYMDCVRQTFKQEGIQGLYKGILPCYLRIGPHTVLSLVFWD 168
+ K + V TF ++ L I RI + V W+
Sbjct: 449 SFNAKDIQIP-----VYDTFDGSDLRVLSGSISE---RIVDCIIRLPVKWE 491
Score = 32.3 bits (73), Expect = 0.085
Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 77/200 (38%)
Query: 32 KIYGQFG-----------VRGLF---RGALGAVIRVMVGSASQLTSFTIFKSYFKRHKIF 77
++ FG +R L+ +G +I+ A L+ ++ K+F
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS---AETLSELI--RTTLDAEKVF 209
Query: 78 SQNED--------------SIINTFAASM--IGGVFIAIFMAP-----FDTISTRLYNQG 116
+Q + + + S IG + +A ++ F R Y +G
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 117 VDQHGKGLL----------YKSYMDCVRQTFKQEGIQGLYKGILPCYLRIGPHTVLSLVF 166
H +GL+ ++S+ VR+ ++++F
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRK-------------------------AITVLF 304
Query: 167 WDMLRGIQA--KYSKPPPLL 184
+ +R +A S PP +L
Sbjct: 305 FIGVRCYEAYPNTSLPPSIL 324
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.046
Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 22/133 (16%)
Query: 46 ALGAVIRVMVGSASQLTSFT------IFKSYFKRHKIFS-QNEDSIINTFAASMIGGVFI 98
L A + + T + Y + E N S+I I
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAE-SI 337
Query: 99 AIFMAPFDTISTRLYNQGVDQHGKGLLYKSYMDCVRQTFKQEGIQGLYK--GILPCYLRI 156
+A +D + N D+ ++ S + + ++ + P I
Sbjct: 338 RDGLATWDN--WKHVN--CDKLTT-IIESSL-----NVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 157 GPHTVLSLVFWDM 169
P +LSL+++D+
Sbjct: 388 -PTILLSLIWFDV 399
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1,
S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo
sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Length = 334
Score = 32.0 bits (72), Expect = 0.095
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 51 IRVMVGSASQLTSFTIFKSYFKRHKIFSQNEDSIINTFAASMIGGVFIAIFMAPFDTIST 110
I+ V + + + I + YF R +I F I A DT
Sbjct: 51 IQHFVRLSKERKAPEINRGYFARVHGV----SQLIKAFLRKTECHCQIVNLGAGMDTTFW 106
Query: 111 RLYNQG 116
RL ++
Sbjct: 107 RLKDED 112
>3biy_A Histone acetyltransferase P300; P300 HAT, bisubstrate inhibitor,
protein-inhibitor complex; HET: 01K; 1.70A {Homo
sapiens}
Length = 380
Score = 30.2 bits (67), Expect = 0.39
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 6/112 (5%)
Query: 44 RGALGAVIRVMVGSASQLTSFTIFKSYFKRHKIFSQNEDSIINTFAA-SMIGGVFIAIFM 102
+ +RV+ S + K+ F +++ A I GV + F
Sbjct: 30 PESGEVTVRVVHASDKTVEVKPGMKARFVDSGEMAESFPYRTKALFAFEEIDGVDLCFFG 89
Query: 103 APFDTISTRLYNQGVDQHGKGLLYKSYMDCVRQTFKQEGIQGLYKGILPCYL 154
+ + Y + +Y SY+D V + +Y IL YL
Sbjct: 90 -----MHVQEYGSDCPPPNQRRVYISYLDSVHFFRPKCLRTAVYHEILIGYL 136
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.89A {Listeria innocua}
Length = 349
Score = 27.3 bits (60), Expect = 2.8
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 21/63 (33%)
Query: 113 YNQGVDQHGKGLLYK-----SYMDCVRQ-------TFKQEGI---------QGLYKGILP 151
YNQGV LY+ Y+D + ++GI +GL+KGI
Sbjct: 213 YNQGVYIGANLELYRITKEAIYLDTANKTAAISLKELTEDGIFKDEGNGGDEGLFKGIFY 272
Query: 152 CYL 154
Y
Sbjct: 273 RYF 275
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell
membrane, MEM protein transport, translocation,
transmembrane, transport; 3.30A {Thermus thermophilus}
PDB: 2rrn_A
Length = 741
Score = 27.1 bits (60), Expect = 4.1
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 81 EDSIINTFAASMIGGVFIAIFM 102
+D+I +++IG + I + +
Sbjct: 268 QDAIQAGIRSALIGTLAIFLLI 289
>1m3y_A The major capsid protein of PBCV-1, VP54; major capsit protein
VP54, jelly RO glycoprotein, viral protein; HET: NDG
MAN NAG; 2.00A {Paramecium bursaria chlorella virus 1}
SCOP: b.121.2.3 b.121.2.3 PDB: 1j5q_A* 3kk5_A 1m4x_A
Length = 413
Score = 26.8 bits (57), Expect = 4.7
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 65 TIFKSYFKRHKIFSQNEDSIINTF 88
T FK+ ++R+ F+ +SI T
Sbjct: 1 TFFKTVYRRYTNFAI--ESIQQTI 22
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 26.4 bits (59), Expect = 6.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 18 GTQHHIDGIVKTLGKIYGQFG 38
G H ID TL K YG FG
Sbjct: 234 GLMHRIDIFNGTLAKAYGVFG 254
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.417
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,712,239
Number of extensions: 151033
Number of successful extensions: 354
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 18
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.7 bits)