RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1152
         (186 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 69.4 bits (168), Expect = 5e-15
 Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 7/159 (4%)

Query: 12  SQQIAVGTQHHIDGIVKTLGKIYGQFGVRGLFRGALGAVIRVMVGSASQLTSFTIFKSYF 71
           +       Q    G+   + KI+   G+RGL++G   +V  +++  A             
Sbjct: 141 ADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRA-----AYFGVYDT 195

Query: 72  KRHKIFSQNEDSIINTFAASMIGGVFIAIFMAPFDTISTRLYNQGVDQHGKGLLYKSYMD 131
            +  +       II ++  +        +   PFDT+  R+  Q   + G  ++Y   +D
Sbjct: 196 AKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS-GRKGADIMYTGTVD 254

Query: 132 CVRQTFKQEGIQGLYKGILPCYLRIGPHTVLSLVFWDML 170
           C R+  K EG +  +KG     LR G      LV +D +
Sbjct: 255 CWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFVLVLYDEI 292



 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 83  SIINTFAASMIGGVFIAIFMAPFDTISTRLYNQGVDQHGKG-LLYKSYMDCVRQTFKQEG 141
           S +  F A  +        +AP + +   L  Q   +       YK  +DCV +  K++G
Sbjct: 5   SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQG 64

Query: 142 IQGLYKGILPCYLRIGPHTVLSLVFWDMLR 171
               ++G L   +R  P   L+  F D  +
Sbjct: 65  FLSFWRGNLANVIRYFPTQALNFAFKDKYK 94


>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
           niger [TaxId: 5061]}
          Length = 385

 Score = 27.2 bits (59), Expect = 1.3
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 20  QHHIDGIVKTLGKIYGQFGVR 40
              + G+V    ++YG  G+R
Sbjct: 327 PKEMGGVVDNAARVYGVQGLR 347


>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
           amagasakiense [TaxId: 63559]}
          Length = 391

 Score = 26.4 bits (57), Expect = 2.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 20  QHHIDGIVKTLGKIYGQFGVR 40
              + G+V    K+YG  G+R
Sbjct: 333 SRELGGVVDATAKVYGTQGLR 353


>d1m3ya1 b.121.2.3 (A:25-221) Major capsid protein vp54
          {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId:
          10506]}
          Length = 197

 Score = 24.9 bits (53), Expect = 6.7
 Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 65 TIFKSYFKRHKIFSQNEDSIINTF 88
          T FK+ ++R+  F+   +SI  T 
Sbjct: 1  TFFKTVYRRYTNFAI--ESIQQTI 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 647,100
Number of extensions: 27096
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 5
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)