BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11523
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E7E|A Chain A, Structure And Substrate Recruitment Of The Human Spindle
Checkpoint Kinase Bub
Length = 365
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 58/118 (49%)
Query: 8 LKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDVYGLAGSMCCTLLG 67
L LID G+SIDM L+P GT F+ T GFQC EM + W+Y D +G+A ++ C L G
Sbjct: 222 LALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFG 281
Query: 68 KYMNTVKRGARWILADTIPRYLRRDVMEPIFDKLLNSPSHYDITLLEDIIHSLEQELE 125
YM G R D+ F +LN P + + L+ + L++ +
Sbjct: 282 TYMKVKNEGGECKPEGLFRRLPHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQ 339
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 30.4 bits (67), Expect = 0.38, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 8 LKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDVYGLA 58
LKLIDFG + + P + T F E+ EG+ Y+TD++ +
Sbjct: 190 LKLIDFGLTAHLD---PKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVG 237
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 8 LKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDVYGLA 58
LKLIDFG + + P + T F E+ EG+ Y+TD++ +
Sbjct: 296 LKLIDFGLTAHLD---PKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVG 343
>pdb|1XDO|A Chain A, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDO|B Chain B, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDP|A Chain A, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
pdb|1XDP|B Chain B, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
Length = 687
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 74 KRGARWILADTIPRYLRRDVMEPIFDKLLNSPSHYDITLLEDIIHSLEQELECSL 128
+R IL D I RY D+ + FD ++ + Y + + D + L E+E SL
Sbjct: 190 RRRKPMILLDNILRYCLDDIFKGFFD--YDALNAYSMKMTRDAEYDLVHEMEASL 242
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 8 LKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDVYGLAGSMCCTLLG 67
+KL DFG S + + ++ V T + E +G +S +D++ + S+ +G
Sbjct: 154 IKLCDFGVSGQLI----DSMANSFVGTRSYMAPERLQGTHYSVQSDIWSMGLSLVELAVG 209
Query: 68 KY 69
+Y
Sbjct: 210 RY 211
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 26.6 bits (57), Expect = 5.0, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 94 MEPIFDKLLNSPSHYDITLLEDIIHSLEQELECSLARSDEGL 135
+EP +LL SP Y +T LE +I ++ ++ L+ GL
Sbjct: 77 VEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGL 118
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 26.6 bits (57), Expect = 5.0, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 94 MEPIFDKLLNSPSHYDITLLEDIIHSLEQELECSLARSDEGL 135
+EP +LL SP Y +T LE +I ++ ++ L+ GL
Sbjct: 77 VEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGL 118
>pdb|3U28|C Chain C, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
pdb|3UAI|C Chain C, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 114
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 16 SIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTD 53
+D L P F T+ DG Q T KEG ++ D
Sbjct: 67 KVDEILGPLNEVFFTIKCGDGVQATSFKEGDKFYIAAD 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,526,547
Number of Sequences: 62578
Number of extensions: 183377
Number of successful extensions: 377
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 9
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)