RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11523
(147 letters)
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas;
spindle assembly checkpoint, mitosis, kinase,
activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo
sapiens}
Length = 365
Score = 126 bits (317), Expect = 5e-36
Identities = 41/129 (31%), Positives = 60/129 (46%)
Query: 8 LKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDVYGLAGSMCCTLLG 67
L LID G+SIDM L+P GT F+ T GFQC EM + W+Y D +G+A ++ C L G
Sbjct: 222 LALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFG 281
Query: 68 KYMNTVKRGARWILADTIPRYLRRDVMEPIFDKLLNSPSHYDITLLEDIIHSLEQELECS 127
YM G R D+ F +LN P + + L+ + L++ +
Sbjct: 282 TYMKVKNEGGECKPEGLFRRLPHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQH 341
Query: 128 LARSDEGLQ 136
L+
Sbjct: 342 YTNKIRALR 350
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 32.1 bits (73), Expect = 0.051
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 6 PTLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDV 54
LKLIDFG + P + T F E+ EG+ Y+TD+
Sbjct: 294 NELKLIDFGLT---AHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDM 339
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma
gondii} PDB: 3q5z_A*
Length = 371
Score = 31.9 bits (72), Expect = 0.056
Identities = 8/62 (12%), Positives = 14/62 (22%), Gaps = 8/62 (12%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSY--HTDVYGLAGSMCCT 64
L L D GT + E ++ + + L G
Sbjct: 232 RLMLGDVSALW-----KVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQL-GLSIYR 285
Query: 65 LL 66
+
Sbjct: 286 VW 287
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.13
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 24/111 (21%)
Query: 50 YHTDVYGLAGSMCCTLLGKYMNTVKRGARWILAD-TIPRY-------LRR---DVMEPIF 98
+H+ + A + L VK + D IP Y LR + E I
Sbjct: 427 FHSHLLVPASDLINKDL------VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 99 DKLLNSPSHYDITLLEDIIHSLE------QELECSLARSDEGLQTVDTILA 143
D ++ P ++ T H L+ L R+ +G V I+A
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG-TGVRVIVA 530
Score = 28.1 bits (62), Expect = 1.3
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 10/40 (25%)
Query: 98 FDKL--LNSPSHYDI--TLLEDIIHSLEQELECSLARSDE 133
F++L L Y L+ D+I + L L R+
Sbjct: 170 FEELRDL-----YQTYHVLVGDLIKFSAETLS-ELIRTTL 203
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin
dependent protein kinase, Mg synaptic plasticity,
pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB:
3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Length = 351
Score = 30.7 bits (70), Expect = 0.16
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGF 37
+KL FG +I L G V T F
Sbjct: 171 PVKLGGFGVAIQ--LGESGLVAGGRVGTPHF 199
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens}
SCOP: d.144.1.7
Length = 321
Score = 29.5 bits (67), Expect = 0.37
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 6 PTLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDV 54
T+K+I+FG++ PG F + T + E+ + S TD+
Sbjct: 141 STIKIIEFGQA---RQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDM 186
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia
californica} SCOP: d.144.1.7
Length = 387
Score = 29.3 bits (66), Expect = 0.38
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 6 PTLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDV 54
++K+IDFG + T P T F E+ + ++TD+
Sbjct: 188 SSVKIIDFGLA---TKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDM 233
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase;
1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A
2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Length = 321
Score = 29.1 bits (66), Expect = 0.41
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 3 SGLPTLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDV 54
+P +KLIDFG + G F + T F E+ D+
Sbjct: 153 IPIPHIKLIDFGLA---HEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADM 201
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit;
HET: MES; 2.60A {Homo sapiens}
Length = 326
Score = 29.1 bits (66), Expect = 0.45
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 6 PTLKLIDFGRSIDMTLYPPGTTFSTVVTTDGF 37
P +K+IDFG + G F + T F
Sbjct: 155 PRIKIIDFGLA---HKIDFGNEFKNIFGTPEF 183
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine
kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing
protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB:
3lm0_A*
Length = 327
Score = 28.8 bits (65), Expect = 0.67
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 2 RSGLPTLKLIDFGRSIDMTLYPPGTTFSTVVTTDGF 37
L +K++DFG S ++ T +
Sbjct: 167 IYPLGDIKIVDFGMS---RKIGHACELREIMGTPEY 199
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3,
ZIP kinase, ZIPK, DAP kinase like kinase, DLK,
structural genomics consortium; HET: 7CP; 1.24A {Homo
sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A*
3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A*
3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A*
3dgk_A ...
Length = 283
Score = 28.7 bits (65), Expect = 0.73
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 6 PTLKLIDFGRSIDMTLYPPGTTFSTVVTTDGF 37
P +KLIDFG + G F + T F
Sbjct: 149 PRIKLIDFGIA---HKIEAGNEFKNIFGTPEF 177
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET:
AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Length = 361
Score = 28.5 bits (64), Expect = 0.75
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 3 SGLPTLKLIDFGRSIDMTLYPPGTTFSTVVTTDGF 37
+P +KLIDFG + G F + T F
Sbjct: 153 IPIPHIKLIDFGLA---HEIEDGVEFKNIFGTPEF 184
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 28.1 bits (63), Expect = 0.99
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 8 LKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDV 54
+K+IDFG + Y P T F E+ S+ TD+
Sbjct: 228 IKIIDFGLA---RRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDM 271
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase,
alternative splicing, ATP-binding, chromosome partition,
differentiation, mRNA processing; 1.73A {Homo sapiens}
PDB: 1wbp_A* 3beg_A* 2x7g_A*
Length = 397
Score = 27.9 bits (62), Expect = 1.1
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 1 MRSGLPTLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDVYGLA 58
+ +K+ D G + F+ + T ++ E+ G ++ D++ A
Sbjct: 228 KNAEKLKVKIADLGNA-----CWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTA 280
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated,
transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A*
2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Length = 362
Score = 27.7 bits (62), Expect = 1.5
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGF 37
+KL DFG +I + T G+
Sbjct: 169 AVKLADFGLAI---EVNDSEAWHGFAGTPGY 196
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics,
parasitology, structural genomics consortium, SGC,
ATP-binding, nucleotide-binding; HET: ANP; 2.55A
{Toxoplasma gondii}
Length = 285
Score = 27.6 bits (62), Expect = 1.7
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTT 34
+K+IDFG + L+ + T
Sbjct: 165 PIKIIDFGLA---ELFKSDEHSTNAAGT 189
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine
biosynthesis,oxidoreductase, structural GE PSI; 2.01A
{Pseudomonas aeruginosa}
Length = 328
Score = 27.5 bits (62), Expect = 1.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 4 GLPTLKLIDFGRSIDMTL 21
GLP LK FG ++++TL
Sbjct: 268 GLPVLKYKGFGAAVNVTL 285
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE
dehydrogenase, metal-binding, NAD, NADP, oxidoreductase,
PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB:
1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Length = 334
Score = 27.5 bits (62), Expect = 1.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 4 GLPTLKLIDFGRSIDMTL 21
GLP LK FGR++++TL
Sbjct: 273 GLPVLKYQGFGRAVNITL 290
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate
biosynthesis, structural GENO PSI-2, protein structure
initiative; 2.30A {Salmonella typhimurium}
Length = 330
Score = 27.2 bits (61), Expect = 1.9
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 4 GLPTLKLIDFGRSIDMTL 21
G LKL+ F +++T
Sbjct: 274 GHIPLKLLGFYDGVNITA 291
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: UNL; 2.63A {Campylobacter jejuni subsp}
Length = 367
Score = 27.4 bits (61), Expect = 1.9
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 4 GLPTLKLIDFGRSIDMTL 21
L LK + F +SI+++L
Sbjct: 307 ALAPLKALYFDKSINVSL 324
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding,
serine/threonine-protein kinase, CGD3_920, transferase;
HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB:
3dfa_A 3ma6_A*
Length = 287
Score = 27.2 bits (61), Expect = 2.0
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTT 34
+K+IDFG S T + T + T
Sbjct: 162 DIKIIDFGLS---TCFQQNTKMKDRIGT 186
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics,
structural genomics consortium, SGC; 1.80A {Toxoplasma
gondii} PDB: 2w1z_A
Length = 377
Score = 27.3 bits (60), Expect = 2.1
Identities = 13/107 (12%), Positives = 28/107 (26%), Gaps = 17/107 (15%)
Query: 8 LKLIDFGRSI--DMTLYPPGTT-FST--VVTTDGFQCTEMKEGREWSYHTDVYGLAGSMC 62
+ L F + + + F + ++ D + L G +
Sbjct: 245 VFLTGFEHLVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWAL-GLVI 303
Query: 63 CTLL-GK---YMNTVKRGARWILAD--TIPRYLRRDVMEPIFDKLLN 103
+ + G+ WI IP+ +R + L
Sbjct: 304 YWIWCADLPITKDAALGGSEWIFRSCKNIPQPVRALLE-----GFLR 345
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4
calmodulin like EF...; calcium dependent protein kinase;
HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II}
PDB: 2qg5_A*
Length = 277
Score = 27.2 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTT 34
LKLIDFG + + PG T V T
Sbjct: 147 PLKLIDFGLA---ARFKPGKMMRTKVGT 171
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 27.3 bits (61), Expect = 2.3
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGF 37
+KL DFG +I++ + T G+
Sbjct: 151 AVKLADFGLAIEVE--GEQQAWFGFAGTPGY 179
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 2.5
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 20/97 (20%)
Query: 54 VYGLAGSMCCTLLGKYMNTVKRGARWILADTIPRYLRRDVME-PIF---DKLLNSPSHYD 109
+ G+ GS GK W+ D Y + M+ IF K NSP
Sbjct: 155 IDGVLGS------GK---------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-ETV 198
Query: 110 ITLLEDIIHSLEQELECSLARSDEGLQTVDTILAQLK 146
+ +L+ +++ ++ S + +I A+L+
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Score = 26.0 bits (56), Expect = 6.5
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 30/96 (31%)
Query: 50 YHTDVYGLAGSMCCTLLGK-YMN-----------TVKRGARWILADTIP------RYLRR 91
+H M TL +++ + A + +T+ Y+
Sbjct: 479 HHLKNIEHPERM--TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 92 DVMEPIFDKLLNSPSHYDITLLEDIIHSLEQELECS 127
+ +P +++L+N+ + D + +E+ L CS
Sbjct: 537 N--DPKYERLVNA--------ILDFLPKIEENLICS 562
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 27.0 bits (60), Expect = 2.6
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGF 37
LKL DFG + + +T T +
Sbjct: 202 ILKLTDFGFA---KETTSHNSLTTPCYTPYY 229
>2fef_A Hypothetical protein PA2201; SAD, structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics; 1.90A {Pseudomonas aeruginosa} SCOP: a.29.11.1
a.254.1.1
Length = 294
Score = 27.1 bits (59), Expect = 2.6
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 77 ARWILADTIPRYLRRDVMEPIFDKLLNSPSHYDITLLEDIIHSLEQELE 125
A +L I R L + I+ + Y LL SL ++ E
Sbjct: 83 ASTLLLKAIDRGLAGAELRSIYLETAALWLDYS-RLLGAARDSLREQGE 130
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding,
nucleotide-binding, serine/threonine-protein kinase,
transferase; HET: TPO; 1.72A {Caenorhabditis elegans}
PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Length = 284
Score = 26.8 bits (60), Expect = 2.6
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGF 37
+KL DFG +I + T G+
Sbjct: 146 AVKLADFGLAI---EVNDSEAWHGFAGTPGY 173
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 27.0 bits (60), Expect = 2.7
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTT 34
+K+IDFG S T + T + T
Sbjct: 162 DIKIIDFGLS---TCFQQNTKMKDRIGT 186
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 26.6 bits (59), Expect = 3.4
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTT 34
+K++DFG S + + + T
Sbjct: 187 NIKIVDFGLS---SFFSKDYKLRDRLGT 211
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK,
ATP-binding, metal-binding, NUCL binding,
serine/threonine-protein kinase, transferase; 2.00A
{Homo sapiens} PDB: 3kn5_A
Length = 325
Score = 26.5 bits (59), Expect = 3.8
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 2 RSGLPTLKLIDFGRSIDMTLYPPGTTFSTVVTTDGF 37
+ +K+IDFG + P T T +
Sbjct: 142 ENDNLEIKIIDFGFARLKP--PDNQPLKTPCFTLHY 175
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV;
calmodulin-binding, nucleotide-binding,
serine/threonine-protein kinase, ATP-binding; HET: DKI;
2.17A {Homo sapiens}
Length = 349
Score = 26.5 bits (59), Expect = 3.9
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTT 34
LK+ DFG S + TV T
Sbjct: 189 PLKIADFGLS---KIVEHQVLMKTVCGT 213
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform;
transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A
1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A
1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Length = 365
Score = 26.6 bits (59), Expect = 3.9
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTT 34
++L DFG S PG + T
Sbjct: 238 QIRLSDFGFS---CHLEPGEKLRELCGT 262
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase,
serine/threonine-protein, ATP-binding,
calmodulin-binding; HET: ATP; 2.20A {Oryctolagus
cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Length = 298
Score = 26.5 bits (59), Expect = 4.1
Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTT 34
+KL DFG S PG V T
Sbjct: 162 NIKLTDFGFS---CQLDPGEKLREVCGT 186
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome
biogenesis, methyltransferase, processing, ribosomal
protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB:
3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Length = 253
Score = 26.1 bits (57), Expect = 4.4
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 85 IPRYLRR--DVMEPIFDKLLNSPSHYDITLLEDIIHSLEQELE 125
IPR +R +M + KL + + LL+ I + + L
Sbjct: 131 IPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLP 173
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 26.2 bits (58), Expect = 4.7
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTT 34
+K++DFG S ++ + T
Sbjct: 177 LIKIVDFGLS---AVFENQKKMKERLGT 201
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 26.2 bits (58), Expect = 5.0
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 9/49 (18%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGR------EWS 49
+++IDFG S T + + T + E+ G WS
Sbjct: 167 NIRIIDFGLS---THFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWS 212
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase,
PASK, protein kinase, drug discovery, ATP-bindin kinase,
nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Length = 335
Score = 25.8 bits (57), Expect = 6.6
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 11/50 (22%)
Query: 8 LKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGRE--------WS 49
+KLIDFG + G F T T + E+ G WS
Sbjct: 169 IKLIDFGSA---AYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWS 215
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase,
FHA domain, ATP-binding, cell cycle, mutation,
LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens}
PDB: 3i6w_A
Length = 419
Score = 25.8 bits (57), Expect = 6.8
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 6 PTLKLIDFGRSIDMTLYPPGTTFSTVVTT 34
+K+ DFG S + + T+ T
Sbjct: 279 CLIKITDFGHS---KILGETSLMRTLCGT 304
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2
calmodulin-like EF...; structural genomics, protist
parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa
II}
Length = 345
Score = 25.6 bits (56), Expect = 7.3
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 7 TLKLIDFGRSIDMTLYPPG--TTFSTVVTTDGFQCTEMKEGREWSY 50
+KL+DFG S + G +T T F E+ SY
Sbjct: 208 EIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESY 253
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2,
autoinhibitory, ATP-binding, nucleotide phosphorylation,
serine/threonine-protein kinase; 2.00A {Mus musculus}
PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Length = 342
Score = 25.3 bits (56), Expect = 7.8
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGF 37
++++ DFG + + T T F
Sbjct: 158 SIRICDFGFAKQLR--AENGLLMTPCYTANF 186
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 25.6 bits (56), Expect = 9.3
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 15/60 (25%)
Query: 8 LKLIDFG--RSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDVYGLAGSMCCTL 65
LKLID G I+ + T GFQ E+ + TD+Y + TL
Sbjct: 220 LKLIDLGAVSRINSF--------GYLYGTPGFQAPEIVRTGP-TVATDIYTVG----RTL 266
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 25.3 bits (54), Expect = 9.9
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 99 DKLLNSPSHYDITLLEDIIHSL-----------EQELECSLARSDEGLQTVDTILAQ 144
+ +L+ + DI LL+ ++ + ++ L + + Q D IL
Sbjct: 4 EGILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILT-KFQDNPDAWQKADQILQF 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.418
Gapped
Lambda K H
0.267 0.0627 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,306,799
Number of extensions: 129517
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 52
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)