RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11523
(147 letters)
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 263
Score = 36.1 bits (83), Expect = 6e-04
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDVYGLAGSMCCTLL 66
LK+ DFG S+ P + +T+ T + EM EGR D++ L L+
Sbjct: 144 ELKIADFGWSVHA----PSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLV 199
Query: 67 GKY 69
GK
Sbjct: 200 GKP 202
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 321
Score = 35.4 bits (81), Expect = 0.001
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 4 GLPTLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDVYGLAGSMCC 63
T+K+I+FG++ PG F + T + E+ + S TD++ L +
Sbjct: 139 RSSTIKIIEFGQA---RQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYV 195
Query: 64 TLLGKY 69
L G
Sbjct: 196 LLSGIN 201
>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 34.6 bits (79), Expect = 0.002
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 1/98 (1%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREW-SYHTDVYGLAGSMCCTL 65
LK+ DFG + + + T + E+ + RE+ + DV+ + L
Sbjct: 141 NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAML 200
Query: 66 LGKYMNTVKRGARWILADTIPRYLRRDVMEPIFDKLLN 103
G+ + +D + + + I L
Sbjct: 201 AGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLA 238
>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 301
Score = 32.9 bits (74), Expect = 0.009
Identities = 8/62 (12%), Positives = 18/62 (29%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDVYGLAGSMCCTLL 66
+K+ DFG S ++ + E ++ +DV+ +
Sbjct: 178 VVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFS 237
Query: 67 GK 68
Sbjct: 238 YG 239
>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 276
Score = 32.6 bits (74), Expect = 0.010
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHT---DVYGLAGSMCC 63
T+K+ DFG + + + F + + + E+ ++ + ++ DVY +
Sbjct: 142 TVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVY----AFGI 197
Query: 64 TLL 66
L
Sbjct: 198 VLY 200
>d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 288
Score = 31.5 bits (70), Expect = 0.024
Identities = 11/89 (12%), Positives = 23/89 (25%), Gaps = 2/89 (2%)
Query: 14 GRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDVYGLAGSMCCTLLGKYMNTV 73
GR I + G + DG + + + W +T + +++
Sbjct: 20 GRDIKVQFQSGGANSPALYLLDGLRAQD--DFSGWDINTPAFEWYDQSGLSVVMPVGGQS 77
Query: 74 KRGARWILADTIPRYLRRDVMEPIFDKLL 102
+ W + E L
Sbjct: 78 SFYSDWYQPACGKAGCQTYKWETFLTSEL 106
>d2plga1 d.198.1.2 (A:3-154) Uncharacterized protein Tll0839
{Synechococcus elongatus [TaxId: 32046]}
Length = 152
Score = 27.9 bits (62), Expect = 0.32
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 95 EPIFDKLLNSPSHYDITLLEDIIHSLEQELECSLARSDEG 134
+P+ L++P + ++E +I SL Q + ++D G
Sbjct: 8 QPVSPASLDAPLENAVEIIETVISSLHQGDAPLVGQTDSG 47
>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2
{Cow (Bos taurus) [TaxId: 9913]}
Length = 364
Score = 28.5 bits (63), Expect = 0.32
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDVYGLAGSMCCTLL 66
+++ D G + D + ++V T +++G + D + L + L
Sbjct: 145 HVRISDLGLACD---FSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLR 201
Query: 67 GKYM 70
G
Sbjct: 202 GHSP 205
>d1m6ka_ e.3.1.1 (A:) Class D beta-lactamase {Escherichia coli,
OXA-1 [TaxId: 562]}
Length = 251
Score = 27.1 bits (59), Expect = 0.78
Identities = 6/39 (15%), Positives = 15/39 (38%)
Query: 13 FGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYH 51
F ++ T P +TF ++ F + + + +
Sbjct: 33 FNKAKCATQMAPDSTFKIALSLMAFDAEIIDQKTIFKWD 71
>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 317
Score = 27.1 bits (59), Expect = 0.88
Identities = 8/55 (14%), Positives = 20/55 (36%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYHTDVYGLAGSM 61
+K+ DFG + + + E R +++ +DV+ ++
Sbjct: 149 HVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTV 203
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 309
Score = 26.9 bits (59), Expect = 1.1
Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 34/146 (23%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEG---REWSYHTDVYGLAGSMCC 63
+KL DFG + M ++ V T + E+ ++ DV+ L +
Sbjct: 153 LVKLGDFGSASIM------APANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIE 206
Query: 64 TLLGK-----------YMNTVKRGARWILADTIPRYLRRDVME----------PIFDKLL 102
K + + + + + Y R+ ++ P + LL
Sbjct: 207 LAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYF-RNFVDSCLQKIPQDRPTSEVLL 265
Query: 103 NSP---SHYDITLLEDIIHSLEQELE 125
T++ D+I + +
Sbjct: 266 KHRFVLRERPPTVIMDLIQRTKDAVR 291
>d1nrfa_ e.3.1.1 (A:) Penicillin receptor BlaR, C-terminal domain
{Bacillus licheniformis [TaxId: 1402]}
Length = 246
Score = 26.6 bits (58), Expect = 1.3
Identities = 6/57 (10%), Positives = 15/57 (26%), Gaps = 11/57 (19%)
Query: 9 KLIDFGRSIDMTLYPPGTTFSTVVT-----------TDGFQCTEMKEGREWSYHTDV 54
K + R + + P +T+ D + + ++ D
Sbjct: 34 KYTIYNRKESTSRFAPASTYKVFSALLALESGIITKNDSHMTWDGTQYPYKEWNQDQ 90
>d1k38a_ e.3.1.1 (A:) Class D beta-lactamase {Salmonella
typhimurium, OXA-2 [TaxId: 90371]}
Length = 241
Score = 26.3 bits (57), Expect = 1.6
Identities = 6/39 (15%), Positives = 11/39 (28%)
Query: 13 FGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYH 51
F Y P +TF T +++ +
Sbjct: 35 FDPVRSKKRYSPASTFKIPHTLFALDAGAVRDEFQIFRW 73
>d1wpia1 c.47.1.18 (A:1-133) Hypothetical protein YKR049C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 133
Score = 25.3 bits (55), Expect = 2.2
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 68 KYMNTVKRGARWILADTIPRYLRRDVMEPIFDKLLNSP 105
+YM T L IP+ L + D
Sbjct: 57 QYMRTSCPQGPVSLQRQIPK-LDSVLKYKHTDPTFGMD 93
>d1xa1a_ e.3.1.1 (A:) Regulatory protein BlaR1 {Staphylococcus
aureus [TaxId: 1280]}
Length = 246
Score = 25.5 bits (55), Expect = 2.8
Identities = 5/45 (11%), Positives = 11/45 (24%)
Query: 7 TLKLIDFGRSIDMTLYPPGTTFSTVVTTDGFQCTEMKEGREWSYH 51
K + Y P +T+ + G + +
Sbjct: 33 KDKYYIYNEKESRKRYSPNSTYKIYLAMFGLDRHIINDENSRMSW 77
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545,
C-terminal domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 73
Score = 23.9 bits (52), Expect = 3.2
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 70 MNTVKRGARWILADTIPRYLRRDVMEPIFDKLLNS 104
M T+ + +W + R L + I D + +
Sbjct: 12 MRTLSKCGKWSD---VKRALELEEGIEISDSEIYN 43
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase
PdxA {Escherichia coli [TaxId: 562]}
Length = 329
Score = 24.8 bits (53), Expect = 5.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 4 GLPTLKLIDFGRSIDMTL 21
GLP LK FGR +++TL
Sbjct: 269 GLPVLKYQGFGRGVNITL 286
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.418
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 561,359
Number of extensions: 24647
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 21
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)