BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11524
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 16/176 (9%)
Query: 83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKWQAHDGLILKVAWCSSTDLILS 139
P+ AW+ D ++ + V NK + + H+G + V W ++ I++
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 140 GGEDCKYKASFVWDTDGRQLYSSLTH---DHPISSLAWAPGGDMFAVGS-YNTLRLC--- 192
G D + ++VW GR +L + + WAP FAVGS + +C
Sbjct: 70 CGTD---RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 126
Query: 193 DKVGW--SHSLDKPDTGSVYDLVW-SNDATQIAGACANVIHIFDIXXXXXXNVTAP 245
+ W + KP +V L W N AG+C IF AP
Sbjct: 127 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 16/176 (9%)
Query: 83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNK---ATKWQAHDGLILKVAWCSSTDLILS 139
P+ AW+ D ++ + V NK + + H+G + + W ++ I++
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 140 GGEDCKYKASFVWDTDGRQLYSSLTH---DHPISSLAWAPGGDMFAVGS-YNTLRLC--- 192
G D + ++VW GR +L + + WAP FAVGS + +C
Sbjct: 70 CGTD---RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 126
Query: 193 DKVGW--SHSLDKPDTGSVYDLVW-SNDATQIAGACANVIHIFDIXXXXXXNVTAP 245
+ W + KP +V L W N AG+C IF AP
Sbjct: 127 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 122 DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSL-THDHPISSLAWAPGGDM 180
D L L +A + + +SGG D K + VWD Q + TH+ ++S+ + P GD
Sbjct: 198 DVLCLDLAPSETGNTFVSGGCD---KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA 254
Query: 181 FAVGSYN-TLRLCD 193
FA GS + T RL D
Sbjct: 255 FASGSDDATCRLYD 268
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 84 VYSAAWSPDSNKVLLT--QAKSLVIKPLSPNNKA-TKWQAHDGLILKVAWCSSTDLILSG 140
V AWSP N + A + + K + + T + H+ + VAW S +L+ +
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC 123
Query: 141 GEDCKYKASFVWDTDGRQLYSSLT----HDHPISSLAWAPGGDMFAVGSY-NTLRL 191
D K+ +VW+ D Y ++ H + + W P ++ A SY +T++L
Sbjct: 124 SRD---KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVW--DTDGRQLYSSLT-HDHPISSLAWA 175
+ H + KVAW + + S D + +W + D + ++L H++ + S+AWA
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFD---ATTCIWKKNQDDFECVTTLEGHENEVKSVAWA 114
Query: 176 PGGDMFAVGSYNTLRLCDKVGWSHSLDKPD 205
P G++ A S DK W +D+ D
Sbjct: 115 PSGNLLATCSR------DKSVWVWEVDEED 138
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 72 LSLCRTLNVSP-PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN---KATKWQAHDGLILK 127
++ + L++ P P Y A++ + + T A + V N A + HD ++
Sbjct: 1 MATSQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTC 60
Query: 128 VAWCSSTDLILSGGEDCKYKASFVWDT--DG--RQLYSSLTHDHPISSLAWAPGGDMFAV 183
V W ++ I++ +D + ++V++ DG +Q L + + + W+P D FAV
Sbjct: 61 VDWAPKSNRIVTCSQD---RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAV 117
Query: 184 GS-YNTLRLC---DKVGW--SHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
GS + +C + W S L +P ++ L W + +A CA+
Sbjct: 118 GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167
>pdb|2JMZ|A Chain A, Solution Structure Of A Klba Intein Precursor From
Methanococcus Jannaschii
pdb|2JNQ|A Chain A, Solution Structure Of A Klba Intein Precursor From
Methanococcus Jannaschii
Length = 186
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 145 KYKASFVWDTDGRQLYSSLTHDHPI----SSLAWAPGGDMFAVGSY------NTLRLCDK 194
KY + T + +LTHDHP+ + +M VG Y NT+ L D+
Sbjct: 81 KYSGKLIKITTKNRREITLTHDHPVYISKTGEVLEINAEMVKVGDYIYIPKNNTINL-DE 139
Query: 195 VGWSHSLDKPDTGSVYDLVWSNDATQIAG 223
V ++D G +YDL ++ T IAG
Sbjct: 140 VIKVETVDY--NGHIYDLTVEDNHTYIAG 166
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAW--AP 176
Q H G +L V W + + D K + +WD Q HD P+ ++ W AP
Sbjct: 83 QMHTGPVLDVCWSDDGSKVFTASCD---KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAP 139
Query: 177 GGDMFAVGSYN-TLRLCD 193
GS++ TL+ D
Sbjct: 140 NYSCVMTGSWDKTLKFWD 157
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 7/163 (4%)
Query: 68 WPQALSLCRTLNV-SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATK-WQAHDGLI 125
W + L +TL S V+ A+SPD ++ + + + +K + N + + H +
Sbjct: 412 WNRNGQLLQTLTGHSSSVWGVAFSPD-DQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 470
Query: 126 LKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGS 185
VA+ I S +D K +W+ +G+ L + H + +A++P G A S
Sbjct: 471 RGVAFSPDGQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527
Query: 186 YN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
+ T++L ++ G + SV+ + +S D IA A ++
Sbjct: 528 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSD 570
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 102/245 (41%), Gaps = 21/245 (8%)
Query: 81 SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATK-WQAHDGLILKVAWCSSTDLILS 139
S V A+SPD + + + + +K + N + + H + VA+ I S
Sbjct: 16 SSSVRGVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 74
Query: 140 GGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKVGWS 198
+D K +W+ +G+ L + H + +A++P G A S + T++L ++ G
Sbjct: 75 ASDDKTVK---LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 131
Query: 199 HSLDKPDTGSVYDLVWSNDATQIAGACAN-VIHIFDIXXXXXXNVTAPLSHSHEITQLAV 257
+ SV+ + +S D IA A + + +++ +T HS + +A
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVWGVAF 188
Query: 258 NQTGSL-----QERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACAN 312
+ G ++ V ++N L ++ HS SV + +S D IA A +
Sbjct: 189 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS------SSVRGVAFSPDGQTIASASDD 242
Query: 313 GSLLL 317
++ L
Sbjct: 243 KTVKL 247
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
Query: 68 WPQALSLCRTLNV-SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATK-WQAHDGLI 125
W + L +TL S V+ A+SPD + + + + +K + N + + H +
Sbjct: 125 WNRNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 183
Query: 126 LKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGS 185
VA+ I S +D K +W+ +G+ L + H + +A++P G A S
Sbjct: 184 WGVAFSPDGQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 240
Query: 186 YN-TLRLCDKVG 196
+ T++L ++ G
Sbjct: 241 DDKTVKLWNRNG 252
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 68 WPQALSLCRTLNV-SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATK-WQAHDGLI 125
W + L +TL S V A+SPD + + + + +K + N + + H +
Sbjct: 371 WNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 429
Query: 126 LKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGS 185
VA+ I S +D K +W+ +G+ L + H + +A++P G A S
Sbjct: 430 WGVAFSPDDQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 486
Query: 186 YN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGAC 225
+ T++L ++ G + SV + +S D IA A
Sbjct: 487 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 121 HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDM 180
H G ++ ++ T L +SG D K V + RQ ++ H+ I+++ + P G+
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG--HESDINAICFFPNGNA 251
Query: 181 FAVGSYN-TLRLCD 193
FA GS + T RL D
Sbjct: 252 FATGSDDATCRLFD 265
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 121 HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDM 180
H G ++ ++ T L +SG D K V + RQ ++ H+ I+++ + P G+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG--HESDINAICFFPNGNA 240
Query: 181 FAVGSYN-TLRLCD 193
FA GS + T RL D
Sbjct: 241 FATGSDDATCRLFD 254
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 121 HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDM 180
H G ++ ++ T L +SG D K V + RQ ++ H+ I+++ + P G+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG--HESDINAICFFPNGNA 240
Query: 181 FAVGSYN-TLRLCD 193
FA GS + T RL D
Sbjct: 241 FATGSDDATCRLFD 254
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 121 HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDM 180
H G ++ ++ T L +SG D K V + RQ ++ H+ I+++ + P G+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG--HESDINAICFFPNGNA 240
Query: 181 FAVGSYN-TLRLCD 193
FA GS + T RL D
Sbjct: 241 FATGSDDATCRLFD 254
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 121 HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDM 180
H G ++ ++ T L +SG D K V + RQ ++ H+ I+++ + P G+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG--HESDINAICFFPNGNA 240
Query: 181 FAVGSYN-TLRLCD 193
FA GS + T RL D
Sbjct: 241 FATGSDDATCRLFD 254
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 165 HDHPISSLAWAPGGDMFA-VGSYNTLRLCDKVGWSHSLDKPD--------TGSVYDLVWS 215
H + S+ + P G +FA G T+ L + V + + D +GSV+ L WS
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 216 NDATQIAGACAN-VIHIFDIXXXXXXNVTAPLSHSHEITQLAV 257
D T+IA A A+ I I+++ T P+ E QL +
Sbjct: 249 PDGTKIASASADKTIKIWNVATLKVEK-TIPVGTRIEDQQLGI 290
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 291 TGSVYDLVWSSDATQIAGACANGSLLL 317
+GSV+ L WS D T+IA A A+ ++ +
Sbjct: 239 SGSVFGLTWSPDGTKIASASADKTIKI 265
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 8/138 (5%)
Query: 46 TVINYPISPYISVLHSYAASHSWPQALSLCRTLNV-SPPVYSAAWSPDSNKVL-LTQAKS 103
T+++ + Y A S + P L CRTL S VYS W+P+ N ++ +Q
Sbjct: 31 TLLDTDVEKYSKAQGRTAVSFN-PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGR 89
Query: 104 LVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGED--CK-YKASFVWDTDGRQLY 160
L++ + K + H +++ A+ + + GG D C + S D DG
Sbjct: 90 LIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPV 149
Query: 161 SSLTHDHP--ISSLAWAP 176
S + H SS + P
Sbjct: 150 SRVLTGHKGYASSCQYVP 167
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 59/163 (36%), Gaps = 23/163 (14%)
Query: 81 SPPVYSAAWSPDSNKVLLTQAKSLV-IKPLSPNNKA----TKWQAHDGLILKVAWCSSTD 135
S V W+PD + +LV + P +P + H G + VAWC
Sbjct: 150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 209
Query: 136 LILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAP------GGDMFA-----VG 184
+L+ G + +W+ S++ + S+ W+P G FA +
Sbjct: 210 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIW 269
Query: 185 SYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
Y T+ ++ K T V L S D +A A A+
Sbjct: 270 KYPTMAKVAEL-------KGHTSRVLSLTMSPDGATVASAAAD 305
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 25 LSYPEVLRFVKNHLTIRRYDGTVINYP---ISPYISVLHSYAASHSWPQALSLCRTLNVS 81
+ Y + L+ + + + +N P + Y S SY H + +LC T+NV+
Sbjct: 120 VKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRSSSYNIDHLVRRLSTLCTTMNVA 179
Query: 82 PPV-YSAAWSPDSNKVLLTQAKSL 104
P V YS+ +P + ++ + K +
Sbjct: 180 PIVRYSSTSTPGTERMAMQLQKEI 203
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 23/155 (14%)
Query: 89 WSPDSNKVLLTQAKSLV-IKPLSPNNKA----TKWQAHDGLILKVAWCSSTDLILSGGED 143
W+PD + +LV + P +P + H G + VAWC +L+ G
Sbjct: 249 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 308
Query: 144 CKYKASFVWDTDGRQLYSSLTHDHPISSLAWAP------GGDMFA-----VGSYNTLRLC 192
+ +W+ S++ + S+ W+P G FA + Y T+
Sbjct: 309 TSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 368
Query: 193 DKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
++ K T V L S D +A A A+
Sbjct: 369 AEL-------KGHTSRVLSLTMSPDGATVASAAAD 396
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 59/163 (36%), Gaps = 23/163 (14%)
Query: 81 SPPVYSAAWSPDSNKVLLTQAKSLV-IKPLSPNNKA----TKWQAHDGLILKVAWCSSTD 135
S V W+PD + +LV + P +P + H G + VAWC
Sbjct: 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 289
Query: 136 LILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAP------GGDMFA-----VG 184
+L+ G + +W+ S++ + S+ W+P G FA +
Sbjct: 290 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIW 349
Query: 185 SYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
Y T+ ++ K T V L S D +A A A+
Sbjct: 350 KYPTMAKVAEL-------KGHTSRVLSLTMSPDGATVASAAAD 385
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 19/115 (16%)
Query: 136 LILSGGEDCKYKASFVWDTDGRQLYSSLT-HDHPISSLAWAPGGDMFAVGSYN-TLRLCD 193
L+ +G DC K +WD + ++ +++ H + ++ ++P + A S + TL+L D
Sbjct: 721 LLATGSSDCFLK---LWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Query: 194 KVGWSHS---------LDKPDTGSVYDLV-----WSNDATQIAGACANVIHIFDI 234
+ L+ D +++ WS D +I A N I +FDI
Sbjct: 778 ATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDI 832
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,460,536
Number of Sequences: 62578
Number of extensions: 432842
Number of successful extensions: 978
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 52
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)