Your job contains 1 sequence.
>psy11524
MNVSPQRVKMGKSRYGLGMDYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLH
SYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQA
HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDM
FAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSS
NVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWS
SDATQIAGACANGSLLLGTIIQR
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11524
(323 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1PNI0 - symbol:IFT80 "Uncharacterized protein"... 548 2.4e-63 2
ZFIN|ZDB-GENE-041212-50 - symbol:ift80 "intraflagellar tr... 535 1.3e-62 2
UNIPROTKB|Q9P2H3 - symbol:IFT80 "Intraflagellar transport... 542 2.5e-61 2
UNIPROTKB|E1BT30 - symbol:IFT80 "Uncharacterized protein"... 514 1.1e-59 2
UNIPROTKB|H3BRJ5 - symbol:H3BRJ5 "Uncharacterized protein... 539 1.4e-59 2
MGI|MGI:1915509 - symbol:Ift80 "intraflagellar transport ... 540 6.8e-54 2
RGD|1312006 - symbol:Ift80 "intraflagellar transport 80 h... 538 1.2e-53 2
WB|WBGene00000484 - symbol:che-2 species:6239 "Caenorhabd... 372 1.8e-41 2
FB|FBgn0032891 - symbol:Oseg5 "Oseg5" species:7227 "Droso... 316 1.4e-34 2
UNIPROTKB|F1N0G0 - symbol:F1N0G0 "Uncharacterized protein... 256 1.9e-30 2
ASPGD|ASPL0000006214 - symbol:AN6385 species:162425 "Emer... 132 8.0e-06 1
FB|FBgn0036354 - symbol:Poc1 "Proteome of centrioles 1" s... 119 0.00019 1
MGI|MGI:2442513 - symbol:Eml5 "echinoderm microtubule ass... 125 0.00033 1
RGD|1303275 - symbol:Eml5 "echinoderm microtubule associa... 125 0.00033 1
UNIPROTKB|D4A992 - symbol:D4A992 "Uncharacterized protein... 115 0.00040 1
DICTYBASE|DDB_G0282189 - symbol:tupA "transcriptional rep... 118 0.00046 1
ZFIN|ZDB-GENE-040426-1110 - symbol:strap "serine/threonin... 113 0.00067 1
TAIR|locus:2025732 - symbol:RAE1 "AT1G80670" species:3702... 113 0.00075 1
FB|FBgn0010356 - symbol:Taf5 "TBP-associated factor 5" sp... 110 0.00075 2
MGI|MGI:1343142 - symbol:Arpc1b "actin related protein 2/... 113 0.00083 1
RGD|2155 - symbol:Arpc1b "actin related protein 2/3 compl... 113 0.00083 1
UNIPROTKB|O88656 - symbol:Arpc1b "Actin-related protein 2... 113 0.00083 1
>UNIPROTKB|F1PNI0 [details] [associations]
symbol:IFT80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060349 "bone morphogenesis" evidence=IEA]
[GO:0060271 "cilium morphogenesis" evidence=IEA] [GO:0007224
"smoothened signaling pathway" evidence=IEA] [GO:0005929 "cilium"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0001649
"osteoblast differentiation" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005813 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005929 OMA:WSRSGML
GeneTree:ENSGT00440000033499 EMBL:AAEX03017331
Ensembl:ENSCAFT00000022596 Uniprot:F1PNI0
Length = 784
Score = 548 (198.0 bits), Expect = 2.4e-63, Sum P(2) = 2.4e-63
Identities = 100/161 (62%), Positives = 122/161 (75%)
Query: 68 WPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLIL 126
W + L TL PVYS AW PDS KVL T K L+IKPL PN K +W+AHDG+IL
Sbjct: 140 WSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIIL 199
Query: 127 KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY 186
KV W S DLILS GEDCKYK VWD+ GR LY+SL H+HPI+S+AWAP G++FAVGS+
Sbjct: 200 KVDWNSVNDLILSAGEDCKYK---VWDSYGRPLYNSLPHEHPITSVAWAPDGELFAVGSF 256
Query: 187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
+TLRLCDK GWS++L+KP+TGS++++ WS D TQIAGAC N
Sbjct: 257 HTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGN 297
Score = 196 (74.1 bits), Expect = 9.9e-13, P = 9.9e-13
Identities = 75/254 (29%), Positives = 116/254 (45%)
Query: 89 WSPDSNKVLL-TQAKSLVIKP-------LSPNNKATKW-QAHDGLILKVAWCSSTDLILS 139
W P S + TQA+S V+ +S + K +AH G +L W +++
Sbjct: 71 WFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVT 130
Query: 140 GGEDCKYKASFVWDTDGRQLYSSLTHDH-PISSLAWAPGGD--MFAVGSYNTLRLCD--- 193
GED + K +W G L S+L P+ S+AW P + ++ G ++
Sbjct: 131 VGEDGQIK---IWSKTG-MLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNA 186
Query: 194 KV-GW-SHS--LDKPDTGSVYDLVWSNDATQIAGACANVIHIFDIXXXXXXNVTAPLSHS 249
KV W +H + K D SV DL+ S AG ++D N L H
Sbjct: 187 KVLQWKAHDGIILKVDWNSVNDLILS------AGEDCKY-KVWDSYGRPLYN---SLPHE 236
Query: 250 HEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGA 309
H IT +A G L V R + WS++L+KP+TGS++++ WS D TQIAGA
Sbjct: 237 HPITSVAWAPDGELFA--VGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGA 294
Query: 310 CANGSLLLGTIIQR 323
C NG ++ ++++
Sbjct: 295 CGNGHVVFAHVVEQ 308
Score = 135 (52.6 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 20 DYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR 76
D E P ++ FV N +TIRR DG++++ ISPY ++LH Y + W A+ LCR
Sbjct: 560 DASEFSKNPHIVSFVGNQVTIRRADGSLVHISISPYPAILHEYVSGSKWEDAVRLCR 616
Score = 118 (46.6 bits), Expect = 2.4e-63, Sum P(2) = 2.4e-63
Identities = 33/99 (33%), Positives = 50/99 (50%)
Query: 215 SNDATQIAG-ACANVIHIFDIXXXXXXNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK 273
SND I A +I +F+ LSH +EI ++A++Q G +R +AFIDK
Sbjct: 432 SNDTIAIKDKADEKIIFLFEASTGKPLGDGKLLSHKNEILEIALDQKGLTNDRKIAFIDK 491
Query: 274 NRDLYL-SMWSHSLDKP--DTGS-VYDLVWSSDATQIAG 308
NRDLY+ S+ ++ G+ V+ L WS + G
Sbjct: 492 NRDLYITSVKRFGKEEQIIKLGTMVHTLAWSDTCNILCG 530
Score = 44 (20.5 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 12/60 (20%), Positives = 28/60 (46%)
Query: 157 RQLYSSLTHDHPISSLAWAPGGDMFAVGS-YNTLRLCDKVGWSHSLDK-PDTGSVYDLVW 214
++L +++TH +S + W ++++ + ++ G + + K PD DL W
Sbjct: 12 KRLLNTVTHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTGETSQIVKLPDDIYPIDLHW 71
Score = 37 (18.1 bits), Expect = 8.1e-55, Sum P(2) = 8.1e-55
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 253 TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKP 289
T + QT SL +A DK + + ++ S KP
Sbjct: 421 TDILNAQTVSLSNDTIAIKDKADEKIIFLFEASTGKP 457
>ZFIN|ZDB-GENE-041212-50 [details] [associations]
symbol:ift80 "intraflagellar transport 80 homolog
(Chlamydomonas)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] [GO:0060026 "convergent
extension" evidence=IMP] [GO:0008104 "protein localization"
evidence=IMP] [GO:0060042 "retina morphogenesis in camera-type eye"
evidence=IMP] [GO:0060271 "cilium morphogenesis" evidence=IMP]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
ZFIN:ZDB-GENE-041212-50 GO:GO:0008104 GO:GO:0019861
Gene3D:2.130.10.10 SUPFAM:SSF50978 eggNOG:COG2319 GO:GO:0060026
GO:GO:0060271 GO:GO:0060042 CTD:57560 HOGENOM:HOG000256816
HOVERGEN:HBG056828 OrthoDB:EOG4K3KX1 EMBL:BC086735 IPI:IPI00510981
RefSeq:NP_001008625.1 UniGene:Dr.37784 ProteinModelPortal:Q5PRA9
STRING:Q5PRA9 GeneID:494082 KEGG:dre:494082 NextBio:20865590
ArrayExpress:Q5PRA9 Uniprot:Q5PRA9
Length = 777
Score = 535 (193.4 bits), Expect = 1.3e-62, Sum P(2) = 1.3e-62
Identities = 97/161 (60%), Positives = 122/161 (75%)
Query: 68 WPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLIL 126
W ++ L TL PVYS AW+PDS +VL T + LV+KPL PN+K +W+AHDG+IL
Sbjct: 133 WSKSGMLRSTLAQQGTPVYSVAWAPDSGRVLYTSGRQLVVKPLQPNSKVLQWKAHDGVIL 192
Query: 127 KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY 186
KV W + DLILSGGEDCKYK VWD+ GR L+SS HD+PI+S+AWAP G++FA+GS+
Sbjct: 193 KVDWSAVNDLILSGGEDCKYK---VWDSYGRLLFSSAPHDYPITSVAWAPDGELFAMGSF 249
Query: 187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
+TLRLCDK GWS+SL+KP TGS+ L WS D TQ+AGAC N
Sbjct: 250 HTLRLCDKTGWSYSLEKPSTGSLLSLCWSADGTQLAGACGN 290
Score = 194 (73.4 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 64/209 (30%), Positives = 94/209 (44%)
Query: 119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDH-PISSLAWAPG 177
+AH G +L W +++ GED + K +W G L S+L P+ S+AWAP
Sbjct: 103 EAHRGAVLAGRWNYDGTALITAGEDGQLK---IWSKSG-MLRSTLAQQGTPVYSVAWAPD 158
Query: 178 GDMFAVGSYNTLRLCDKVGWSHSLD-KPDTGSVYDLVWS--NDATQIAGACANVIHIFDI 234
S L + S L K G + + WS ND G ++D
Sbjct: 159 SGRVLYTSGRQLVVKPLQPNSKVLQWKAHDGVILKVDWSAVNDLILSGGEDCKY-KVWDS 217
Query: 235 XXXXXXNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSV 294
+ +AP H + IT +A G L + R + WS+SL+KP TGS+
Sbjct: 218 YGRLLFS-SAP--HDYPITSVAWAPDGELFA--MGSFHTLRLCDKTGWSYSLEKPSTGSL 272
Query: 295 YDLVWSSDATQIAGACANGSLLLGTIIQR 323
L WS+D TQ+AGAC NG +L I+++
Sbjct: 273 LSLCWSADGTQLAGACGNGHVLFAHIVEQ 301
Score = 126 (49.4 bits), Expect = 1.3e-62, Sum P(2) = 1.3e-62
Identities = 34/101 (33%), Positives = 50/101 (49%)
Query: 215 SNDATQIAGAC-ANVIHIFDIXXXXXXNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK 273
SND I V+ +F+ PL H E+ +A++Q GS +R +A IDK
Sbjct: 425 SNDTIAIRDTTDERVVFLFEAQTGKAIGDGKPLIHKIEVVLIALDQCGSSNDRRIALIDK 484
Query: 274 NRDLYLSMW-----SHSLDKPDTGSVYD-LVWSSDATQIAG 308
NRDLYL+ +HS+ K GS+ D + W+ A + G
Sbjct: 485 NRDLYLTSVRKLGRAHSIYK--IGSMVDTMAWNDSANILCG 523
Score = 120 (47.3 bits), Expect = 0.00040, P = 0.00040
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 20 DYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR 76
D E P+++ +V + +T+RR DG+++ +SPY ++LH Y +S W AL +CR
Sbjct: 553 DSSEFSRPPQMVSYVGSQVTVRRVDGSLVCTAVSPYPTLLHEYTSSARWEDALRICR 609
>UNIPROTKB|Q9P2H3 [details] [associations]
symbol:IFT80 "Intraflagellar transport protein 80 homolog"
species:9606 "Homo sapiens" [GO:0005932 "microtubule basal body"
evidence=IEA] [GO:0035085 "cilium axoneme" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
EMBL:CH471052 eggNOG:COG2319 GO:GO:0005932 GO:GO:0035085
Orphanet:474 EMBL:AK303410 EMBL:AC024221 EMBL:AC079594
EMBL:BC030774 EMBL:BC042027 EMBL:BC101494 EMBL:BC113669
EMBL:AB037795 EMBL:AL133045 IPI:IPI00175647 IPI:IPI00946083
RefSeq:NP_001177170.1 RefSeq:NP_001177171.1 RefSeq:NP_065851.1
UniGene:Hs.478095 ProteinModelPortal:Q9P2H3 SMR:Q9P2H3
IntAct:Q9P2H3 STRING:Q9P2H3 PhosphoSite:Q9P2H3 DMDM:294862504
PaxDb:Q9P2H3 PRIDE:Q9P2H3 DNASU:57560 Ensembl:ENST00000326448
Ensembl:ENST00000483465 GeneID:57560 KEGG:hsa:57560 UCSC:uc003fdb.2
CTD:57560 GeneCards:GC03M159974 HGNC:HGNC:29262 HPA:HPA035868
MIM:611177 MIM:611263 neXtProt:NX_Q9P2H3 Orphanet:93271
PharmGKB:PA142671664 HOGENOM:HOG000256816 HOVERGEN:HBG056828
InParanoid:Q9P2H3 OMA:WSRSGML OrthoDB:EOG4K3KX1 PhylomeDB:Q9P2H3
ChiTaRS:IFT80 GenomeRNAi:57560 NextBio:64058 ArrayExpress:Q9P2H3
Bgee:Q9P2H3 CleanEx:HS_IFT80 Genevestigator:Q9P2H3
GermOnline:ENSG00000068885 Uniprot:Q9P2H3
Length = 777
Score = 542 (195.9 bits), Expect = 2.5e-61, Sum P(2) = 2.5e-61
Identities = 99/161 (61%), Positives = 121/161 (75%)
Query: 68 WPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLIL 126
W + L TL PVYS AW PDS KVL T K L+IKPL PN K +W+AHDG+IL
Sbjct: 133 WSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIIL 192
Query: 127 KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY 186
KV W S DLILS GEDCKYK VWD+ GR LY+S H+HPI+S+AWAP G++FAVGS+
Sbjct: 193 KVDWNSVNDLILSAGEDCKYK---VWDSYGRPLYNSQPHEHPITSVAWAPDGELFAVGSF 249
Query: 187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
+TLRLCDK GWS++L+KP+TGS++++ WS D TQIAGAC N
Sbjct: 250 HTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGN 290
Score = 195 (73.7 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 76/254 (29%), Positives = 117/254 (46%)
Query: 89 WSPDSNKVLL-TQAKSLVIKP-------LSPNNKATKW-QAHDGLILKVAWCSSTDLILS 139
W P S V TQA+S V+ +S + K +AH G +L W +++
Sbjct: 64 WFPKSLGVKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVT 123
Query: 140 GGEDCKYKASFVWDTDGRQLYSSLTHDH-PISSLAWAPGGD--MFAVGSYNTLRLCD--- 193
GED + K +W G L S+L P+ S+AW P + ++ G ++
Sbjct: 124 VGEDGQIK---IWSKTG-MLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNA 179
Query: 194 KV-GW-SHS--LDKPDTGSVYDLVWSNDATQIAGACANVIHIFDIXXXXXXNVTAPLSHS 249
KV W +H + K D SV DL+ S AG ++D N + P H
Sbjct: 180 KVLQWKAHDGIILKVDWNSVNDLILS------AGEDCKY-KVWDSYGRPLYN-SQP--HE 229
Query: 250 HEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGA 309
H IT +A G L V R + WS++L+KP+TGS++++ WS D TQIAGA
Sbjct: 230 HPITSVAWAPDGELFA--VGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGA 287
Query: 310 CANGSLLLGTIIQR 323
C NG ++ ++++
Sbjct: 288 CGNGHVVFAHVVEQ 301
Score = 136 (52.9 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 20 DYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR 76
D E P ++ FV N +TIRR DG++++ I+PY ++LH Y +S W A+ LCR
Sbjct: 553 DASEFSKNPHIVSFVGNQVTIRRADGSLVHISITPYPAILHEYVSSSKWEDAVRLCR 609
Score = 105 (42.0 bits), Expect = 2.5e-61, Sum P(2) = 2.5e-61
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 215 SNDATQIAG-ACANVIHIFDIXXXXXXNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK 273
SND I A +I +F+ LSH +EI ++A++Q G +R +AFIDK
Sbjct: 425 SNDTIAIRDKADEKIIFLFEASTGKPLGDGKFLSHKNEILEIALDQKGLTNDRKIAFIDK 484
Query: 274 NRDLYLS 280
NRDL ++
Sbjct: 485 NRDLCIT 491
Score = 37 (18.1 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 253 TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKP 289
T + QT SL +A DK + + ++ S KP
Sbjct: 414 TDILNAQTVSLSNDTIAIRDKADEKIIFLFEASTGKP 450
>UNIPROTKB|E1BT30 [details] [associations]
symbol:IFT80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001649 "osteoblast differentiation" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005929 "cilium"
evidence=IEA] [GO:0007224 "smoothened signaling pathway"
evidence=IEA] [GO:0060271 "cilium morphogenesis" evidence=IEA]
[GO:0060349 "bone morphogenesis" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005813 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005929 GeneTree:ENSGT00440000033499
EMBL:AADN02021067 IPI:IPI00603526 Ensembl:ENSGALT00000015564
ArrayExpress:E1BT30 Uniprot:E1BT30
Length = 780
Score = 514 (186.0 bits), Expect = 1.1e-59, Sum P(2) = 1.1e-59
Identities = 96/166 (57%), Positives = 121/166 (72%)
Query: 68 WPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLIL 126
W ++ L TL PVYS AW PDS KVL T K L+IKPL PN K +W+AHDGLIL
Sbjct: 134 WSKSGMLRSTLAQQGTPVYSVAWGPDSEKVLYTSGKQLIIKPLQPNVKLLQWKAHDGLIL 193
Query: 127 KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY 186
K W S +LILS GEDCKYK VWD+ G LYSS H++PI+S+AW+ G++FAVGS+
Sbjct: 194 KTDWNSVNELILSAGEDCKYK---VWDSYGHLLYSSQPHEYPITSVAWSGDGELFAVGSF 250
Query: 187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIF 232
+TLRLCDK GWS++L+KP+TGS++++ WS D TQ+AGAC N IF
Sbjct: 251 HTLRLCDKTGWSYALEKPNTGSIFNIAWSVDGTQLAGACGNGHVIF 296
Score = 185 (70.2 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 62/215 (28%), Positives = 103/215 (47%)
Query: 119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDH-PISSLAWAPG 177
+AH G +L W S + + GED + K +W G L S+L P+ S+AW P
Sbjct: 104 EAHSGAVLAGRWNSEGTALATVGEDGQVK---IWSKSG-MLRSTLAQQGTPVYSVAWGPD 159
Query: 178 GD--MFAVGSYNTLR-LCDKVG---W-SHS--LDKPDTGSVYDLVWSNDATQIAGACANV 228
+ ++ G ++ L V W +H + K D SV +L+ S AG
Sbjct: 160 SEKVLYTSGKQLIIKPLQPNVKLLQWKAHDGLILKTDWNSVNELILS------AGEDCKY 213
Query: 229 IHIFDIXXXXXXNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDK 288
++D + + P H + IT +A + G L V R + WS++L+K
Sbjct: 214 -KVWDSYGHLLYS-SQP--HEYPITSVAWSGDGELFA--VGSFHTLRLCDKTGWSYALEK 267
Query: 289 PDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQR 323
P+TGS++++ WS D TQ+AGAC NG ++ ++++
Sbjct: 268 PNTGSIFNIAWSVDGTQLAGACGNGHVIFAHVVEQ 302
Score = 137 (53.3 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 28 PEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR 76
P+++ FV N +TIRR DG++I+ ISPY +LH Y +S W A+ LCR
Sbjct: 562 PQIVHFVGNQITIRRADGSLIHINISPYPVILHEYVSSSKWEDAVRLCR 610
Score = 123 (48.4 bits), Expect = 1.1e-59, Sum P(2) = 1.1e-59
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 215 SNDATQIAG-ACANVIHIFDIXXXXXXNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK 273
SND + A VI+IFD L+H EI ++A++Q G ER +AFIDK
Sbjct: 426 SNDTLAVKDKADEKVIYIFDAISGKPLGDGKSLTHKTEIVEIALDQKGLTNERKIAFIDK 485
Query: 274 NRDLYLS 280
NRDLY++
Sbjct: 486 NRDLYIT 492
Score = 45 (20.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 27/113 (23%), Positives = 46/113 (40%)
Query: 121 HDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHD-HPISSLAWAP--- 176
H L+ V W ++ +L + K + + R + L D +PI L W P
Sbjct: 14 HKELVSCVGWTTADELYSCSDDHQILKWNLLTSETSRVV--KLPDDTYPID-LHWLPRSV 70
Query: 177 GG------DMFAVGSYN-TLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIA 222
GG + F + S + L KVG + +G+V W+++ T +A
Sbjct: 71 GGKKQSQAESFVLTSSDGKFHLISKVGRVEKSVEAHSGAVLAGRWNSEGTALA 123
>UNIPROTKB|H3BRJ5 [details] [associations]
symbol:H3BRJ5 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0005622 "intracellular" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR017986 InterPro:IPR000315 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00643 PROSITE:PS50082
PROSITE:PS50089 PROSITE:PS50119 PROSITE:PS50294 SMART:SM00184
SMART:SM00320 Prosite:PS00518 Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0046872 GO:GO:0008270 GO:GO:0005622 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 EMBL:AC112641 EMBL:AC024221
EMBL:AC079594 ProteinModelPortal:H3BRJ5 SMR:H3BRJ5 PRIDE:H3BRJ5
Ensembl:ENST00000483754 Bgee:H3BRJ5 Uniprot:H3BRJ5
Length = 948
Score = 539 (194.8 bits), Expect = 1.4e-59, Sum P(2) = 1.4e-59
Identities = 95/145 (65%), Positives = 116/145 (80%)
Query: 83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
PVYS AW PDS KVL T K L+IKPL PN K +W+AHDG+ILKV W S DLILS GE
Sbjct: 320 PVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGE 379
Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
DCKYK VWD+ GR LY+S H+HPI+S+AWAP G++FAVGS++TLRLCDK GWS++L+
Sbjct: 380 DCKYK---VWDSYGRPLYNSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALE 436
Query: 203 KPDTGSVYDLVWSNDATQIAGACAN 227
KP+TGS++++ WS D TQIAGAC N
Sbjct: 437 KPNTGSIFNIAWSIDGTQIAGACGN 461
Score = 156 (60.0 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 51/165 (30%), Positives = 80/165 (48%)
Query: 168 PISSLAWAPGGD--MFAVGSYNTLRLCD---KV-GW-SHS--LDKPDTGSVYDLVWSNDA 218
P+ S+AW P + ++ G ++ KV W +H + K D SV DL+ S
Sbjct: 320 PVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILS--- 376
Query: 219 TQIAGACANVIHIFDIXXXXXXNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLY 278
AG ++D N + P H H IT +A G L V R
Sbjct: 377 ---AGEDCKY-KVWDSYGRPLYN-SQP--HEHPITSVAWAPDGELFA--VGSFHTLRLCD 427
Query: 279 LSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQR 323
+ WS++L+KP+TGS++++ WS D TQIAGAC NG ++ ++++
Sbjct: 428 KTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQ 472
Score = 136 (52.9 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 20 DYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR 76
D E P ++ FV N +TIRR DG++++ I+PY ++LH Y +S W A+ LCR
Sbjct: 724 DASEFSKNPHIVSFVGNQVTIRRADGSLVHISITPYPAILHEYVSSSKWEDAVRLCR 780
Score = 105 (42.0 bits), Expect = 1.4e-59, Sum P(2) = 1.4e-59
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 215 SNDATQIAG-ACANVIHIFDIXXXXXXNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK 273
SND I A +I +F+ LSH +EI ++A++Q G +R +AFIDK
Sbjct: 596 SNDTIAIRDKADEKIIFLFEASTGKPLGDGKFLSHKNEILEIALDQKGLTNDRKIAFIDK 655
Query: 274 NRDLYLS 280
NRDL ++
Sbjct: 656 NRDLCIT 662
Score = 37 (18.1 bits), Expect = 2.0e-52, Sum P(2) = 2.0e-52
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 253 TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKP 289
T + QT SL +A DK + + ++ S KP
Sbjct: 585 TDILNAQTVSLSNDTIAIRDKADEKIIFLFEASTGKP 621
>MGI|MGI:1915509 [details] [associations]
symbol:Ift80 "intraflagellar transport 80" species:10090
"Mus musculus" [GO:0001649 "osteoblast differentiation"
evidence=IGI;IMP] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005813 "centrosome"
evidence=IDA] [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0005929
"cilium" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IMP] [GO:0042995 "cell projection" evidence=IEA]
[GO:0060271 "cilium morphogenesis" evidence=IMP] [GO:0060349 "bone
morphogenesis" evidence=IMP] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 MGI:MGI:1915509 GO:GO:0005737 GO:GO:0005813
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0005929
eggNOG:COG2319 GO:GO:0005932 GO:GO:0001649 GO:GO:0060349
GO:GO:0007224 GO:GO:0060271 GO:GO:0035085 CTD:57560
HOGENOM:HOG000256816 HOVERGEN:HBG056828 OMA:WSRSGML
OrthoDB:EOG4K3KX1 EMBL:AK129339 EMBL:BC013814 EMBL:BC034101
EMBL:AK042231 IPI:IPI00172132 IPI:IPI00858175 RefSeq:NP_080917.1
UniGene:Mm.389451 ProteinModelPortal:Q8K057 SMR:Q8K057
STRING:Q8K057 PhosphoSite:Q8K057 PaxDb:Q8K057 PRIDE:Q8K057
Ensembl:ENSMUST00000029347 Ensembl:ENSMUST00000107812
Ensembl:ENSMUST00000169064 GeneID:68259 KEGG:mmu:68259
UCSC:uc008plx.2 GeneTree:ENSGT00440000033499 InParanoid:Q8K057
NextBio:326842 Bgee:Q8K057 Genevestigator:Q8K057
GermOnline:ENSMUSG00000027778 Uniprot:Q8K057
Length = 777
Score = 540 (195.1 bits), Expect = 6.8e-54, Sum P(2) = 6.8e-54
Identities = 99/161 (61%), Positives = 120/161 (74%)
Query: 68 WPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLIL 126
W + L TL PVYS AW PDS KVL T K L+IKPL PN K +W+AHDG+IL
Sbjct: 133 WSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIIL 192
Query: 127 KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY 186
KV W S DLILS GEDCKYK VWD+ GR LY S H+HPI+S+AWAP G++FAVGS+
Sbjct: 193 KVDWNSVNDLILSAGEDCKYK---VWDSYGRVLYGSQPHEHPITSVAWAPDGELFAVGSF 249
Query: 187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
+TLRLCDK GWS++L+KP+TGS++++ WS D TQIAGAC N
Sbjct: 250 HTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGN 290
Score = 189 (71.6 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 74/254 (29%), Positives = 116/254 (45%)
Query: 89 WSPDSNKVLL-TQAKSLVIKP-------LSPNNKATKW-QAHDGLILKVAWCSSTDLILS 139
W P S + TQA+S V+ +S + K +AH G +L W +++
Sbjct: 64 WFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVT 123
Query: 140 GGEDCKYKASFVWDTDGRQLYSSLTHDH-PISSLAWAPGGD--MFAVGSYNTLRLCD--- 193
GED + K +W G L S+L P+ S+AW P + ++ G ++
Sbjct: 124 VGEDGQVK---IWSKTG-MLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNA 179
Query: 194 KV-GW-SHS--LDKPDTGSVYDLVWSNDATQIAGACANVIHIFDIXXXXXXNVTAPLSHS 249
KV W +H + K D SV DL+ S AG ++D + P H
Sbjct: 180 KVLQWKAHDGIILKVDWNSVNDLILS------AGEDCKY-KVWDSYGRVLYG-SQP--HE 229
Query: 250 HEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGA 309
H IT +A G L V R + WS++L+KP+TGS++++ WS D TQIAGA
Sbjct: 230 HPITSVAWAPDGELFA--VGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGA 287
Query: 310 CANGSLLLGTIIQR 323
C NG ++ ++++
Sbjct: 288 CGNGHVVFAHVVEQ 301
Score = 140 (54.3 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 20 DYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR 76
D E P ++ FV N +TIRR DG++++ ISPY ++LH Y +S W +A+ LCR
Sbjct: 553 DASEYSKNPHIVSFVGNQVTIRRADGSLVHISISPYPAILHEYVSSSKWEEAVRLCR 609
Score = 119 (46.9 bits), Expect = 0.00052, P = 0.00052
Identities = 61/249 (24%), Positives = 107/249 (42%)
Query: 39 TIRRYDGTVINYPIS-PYISVLHSYAASHSWPQALSLCRTLNVS-PPVYSAAWSPDSNKV 96
T+R D T +Y + P + + A S Q C +V V W + +V
Sbjct: 251 TLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQRWEWKNFQV 310
Query: 97 LLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT-- 154
LT+ +++ ++ + N+ + D +I A + L++S C ++ W+T
Sbjct: 311 TLTKRRTMQVRNVL-NDAVDLLEFRDRVIK--ASLNHAHLVVSTSLQCYVFSTKNWNTPL 367
Query: 155 --DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDL 212
D ++ SL L GG ++ + SY R + + D + +
Sbjct: 368 IFDLKEGTVSLILQAERHFLL-VDGGGIY-LHSYEG-RFISSPKFPGM--RTDILNAQTV 422
Query: 213 VWSNDATQIAG-ACANVIHIFDIXXXXXXNVTAPLSHSHEITQLAVNQTGSLQERHVAFI 271
SND I A +I +F+ LSH +EI+++A++Q G +R +AFI
Sbjct: 423 SLSNDTIAIKDKADEKIIFLFEASTGKPLGDGKLLSHKNEISEIALDQKGLTNDRKIAFI 482
Query: 272 DKNRDLYLS 280
DKNRDLY++
Sbjct: 483 DKNRDLYIT 491
Score = 37 (18.1 bits), Expect = 6.8e-54, Sum P(2) = 6.8e-54
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 253 TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKP 289
T + QT SL +A DK + + ++ S KP
Sbjct: 414 TDILNAQTVSLSNDTIAIKDKADEKIIFLFEASTGKP 450
>RGD|1312006 [details] [associations]
symbol:Ift80 "intraflagellar transport 80 homolog
(Chlamydomonas)" species:10116 "Rattus norvegicus" [GO:0001649
"osteoblast differentiation" evidence=IEA;ISO] [GO:0005813
"centrosome" evidence=IEA;ISO] [GO:0005929 "cilium" evidence=ISO]
[GO:0005932 "microtubule basal body" evidence=IEA] [GO:0007224
"smoothened signaling pathway" evidence=IEA;ISO] [GO:0035085
"cilium axoneme" evidence=IEA] [GO:0060271 "cilium morphogenesis"
evidence=IEA;ISO] [GO:0060349 "bone morphogenesis"
evidence=IEA;ISO] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 RGD:1312006 GO:GO:0005737 GO:GO:0005813
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 eggNOG:COG2319
GO:GO:0005932 GO:GO:0035085 CTD:57560 HOGENOM:HOG000256816
HOVERGEN:HBG056828 OrthoDB:EOG4K3KX1 GeneTree:ENSGT00440000033499
EMBL:BC081931 EMBL:BC081937 IPI:IPI00471838 RefSeq:NP_001013933.1
UniGene:Rn.6742 ProteinModelPortal:Q66HB3 STRING:Q66HB3
PRIDE:Q66HB3 Ensembl:ENSRNOT00000013216 GeneID:295106
KEGG:rno:295106 UCSC:RGD:1312006 InParanoid:Q66HB3 NextBio:638989
Genevestigator:Q66HB3 GermOnline:ENSRNOG00000009808 Uniprot:Q66HB3
Length = 777
Score = 538 (194.4 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
Identities = 99/161 (61%), Positives = 120/161 (74%)
Query: 68 WPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLIL 126
W + L TL PVYS AW PDS KVL T K L+IKPL PN K +W+AHDG+IL
Sbjct: 133 WSKTGMLRSTLAQQGIPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIIL 192
Query: 127 KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY 186
KV W S DLILS GEDCKYK VWD+ GR LY S H+HPI+S+AWAP G++FAVGS+
Sbjct: 193 KVDWNSVNDLILSAGEDCKYK---VWDSYGRVLYGSQPHEHPITSVAWAPDGELFAVGSF 249
Query: 187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
+TLRLCDK GWS++L+KP+TGS++++ WS D TQIAGAC N
Sbjct: 250 HTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGN 290
Score = 189 (71.6 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 74/254 (29%), Positives = 116/254 (45%)
Query: 89 WSPDSNKVLL-TQAKSLVIKP-------LSPNNKATKW-QAHDGLILKVAWCSSTDLILS 139
W P S + TQA+S V+ +S + K +AH G +L W +++
Sbjct: 64 WFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVT 123
Query: 140 GGEDCKYKASFVWDTDGRQLYSSLTHDH-PISSLAWAPGGD--MFAVGSYNTLRLCD--- 193
GED + K +W G L S+L P+ S+AW P + ++ G ++
Sbjct: 124 VGEDGQVK---IWSKTG-MLRSTLAQQGIPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNA 179
Query: 194 KV-GW-SHS--LDKPDTGSVYDLVWSNDATQIAGACANVIHIFDIXXXXXXNVTAPLSHS 249
KV W +H + K D SV DL+ S AG ++D + P H
Sbjct: 180 KVLQWKAHDGIILKVDWNSVNDLILS------AGEDCKY-KVWDSYGRVLYG-SQP--HE 229
Query: 250 HEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGA 309
H IT +A G L V R + WS++L+KP+TGS++++ WS D TQIAGA
Sbjct: 230 HPITSVAWAPDGELFA--VGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGA 287
Query: 310 CANGSLLLGTIIQR 323
C NG ++ ++++
Sbjct: 288 CGNGHVVFAHVVEQ 301
Score = 137 (53.3 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 20 DYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR 76
D E P ++ FV N +T+RR DG++++ ISPY ++LH Y +S W A+ LCR
Sbjct: 553 DASEYSKNPHIVSFVGNQVTVRRADGSLVHISISPYPAILHEYVSSSKWEDAVRLCR 609
Score = 118 (46.6 bits), Expect = 0.00067, P = 0.00067
Identities = 61/249 (24%), Positives = 107/249 (42%)
Query: 39 TIRRYDGTVINYPIS-PYISVLHSYAASHSWPQALSLCRTLNVS-PPVYSAAWSPDSNKV 96
T+R D T +Y + P + + A S Q C +V V W + +V
Sbjct: 251 TLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQRWEWKNFQV 310
Query: 97 LLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT-- 154
LT+ +++ ++ + N+ + D +I A + L++S C ++ W+T
Sbjct: 311 TLTKRRTMQVRNVL-NDAVDLLEFRDRVIK--ASLNHAHLVVSTSLQCYVFSTKNWNTPL 367
Query: 155 --DGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDL 212
D ++ SL L GG ++ + SY R + + D + +
Sbjct: 368 IFDLKEGTVSLILQAERHFLL-VDGGGIY-LHSYEG-RFISSPKFPGM--RTDILNAQTV 422
Query: 213 VWSNDATQIAG-ACANVIHIFDIXXXXXXNVTAPLSHSHEITQLAVNQTGSLQERHVAFI 271
SND I A +I +F+ LSH +EI+++A++Q G +R +AFI
Sbjct: 423 SLSNDTIAIKDKADEKIIFLFEASTGKPLGDGKLLSHKNEISEVALDQKGLTNDRKIAFI 482
Query: 272 DKNRDLYLS 280
DKNRDLY++
Sbjct: 483 DKNRDLYIT 491
Score = 37 (18.1 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 253 TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKP 289
T + QT SL +A DK + + ++ S KP
Sbjct: 414 TDILNAQTVSLSNDTIAIKDKADEKIIFLFEASTGKP 450
>WB|WBGene00000484 [details] [associations]
symbol:che-2 species:6239 "Caenorhabditis elegans"
[GO:0042384 "cilium assembly" evidence=IMP] [GO:0040024 "dauer
larval development" evidence=IGI] [GO:0006935 "chemotaxis"
evidence=IMP] [GO:0030512 "negative regulation of transforming
growth factor beta receptor signaling pathway" evidence=IGI]
[GO:0031513 "nonmotile primary cilium" evidence=IDA] [GO:0005198
"structural molecule activity" evidence=IMP] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0005198 GO:GO:0006935 GO:GO:0040024 GO:GO:0042384
GO:GO:0030512 GO:GO:0031513 OMA:WSRSGML
GeneTree:ENSGT00440000033499 EMBL:FO080171 EMBL:AJ011523
RefSeq:NP_508106.1 UniGene:Cel.19591 ProteinModelPortal:G5EGF0
SMR:G5EGF0 EnsemblMetazoa:F38G1.1.1 EnsemblMetazoa:F38G1.1.2
GeneID:180401 KEGG:cel:CELE_F38G1.1 CTD:180401 WormBase:F38G1.1
NextBio:909196 Uniprot:G5EGF0
Length = 760
Score = 372 (136.0 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 76/154 (49%), Positives = 98/154 (63%)
Query: 84 VYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGED 143
VY AW S+ VL A IK L KW+AHDG+IL W ++DLI++GGED
Sbjct: 148 VYCVAWDSTSSNVLYCNADHCYIKSLKMQVAPIKWKAHDGIILCCDWNPTSDLIVTGGED 207
Query: 144 CKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLDK 203
K+K VWD G+ L++S HD+PI+S++W G +FAVGS+N LRLCDK GWSHSL+K
Sbjct: 208 LKFK---VWDGFGQILFNSSVHDYPITSISWNTDGTLFAVGSHNILRLCDKSGWSHSLEK 264
Query: 204 PDTGSVYDLVWSNDATQIA-GACANVI---HIFD 233
+ GSV L WS D TQ+A G A ++ HI D
Sbjct: 265 MNAGSVMALSWSPDGTQLAVGTAAGLVFHAHIID 298
Score = 102 (41.0 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 29/76 (38%), Positives = 39/76 (51%)
Query: 248 HSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIA 307
H + IT ++ N G+L V + R S WSHSL+K + GSV L WS D TQ+A
Sbjct: 226 HDYPITSISWNTDGTLFA--VGSHNILRLCDKSGWSHSLEKMNAGSVMALSWSPDGTQLA 283
Query: 308 GACANGSLLLGTIIQR 323
A G + II +
Sbjct: 284 VGTAAGLVFHAHIIDK 299
Score = 101 (40.6 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 29/105 (27%), Positives = 49/105 (46%)
Query: 215 SNDATQIAGACAN-VIHIFDIXXXXXXNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK 273
+ND + N V+H FD L H H+I +L VNQ G L +R+VAF D+
Sbjct: 424 ANDTLVVRDRADNKVLHFFDPTTGKAQG-DGNLKHEHDIVELTVNQCGPLNDRNVAFRDQ 482
Query: 274 NRDLYLSM---WSHSLDKPDTGSVYDLVWSSDATQIAGACANGSL 315
++++M + S GS+ + + +D T + + G +
Sbjct: 483 IGAVHIAMVKTFGVSQRMVKIGSLVEQLVFNDVTNMLCGISEGKI 527
Score = 61 (26.5 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 26/83 (31%), Positives = 31/83 (37%)
Query: 94 NKVLLTQAKSLVIKPLSPNNKATKW-QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVW 152
N V I LS N K AH+G L W S +LS GED K +W
Sbjct: 75 NDVFAVSTSDGKINILSRNGKVENMVDAHNGAALCARWNSDGTGLLSSGEDGFVK---MW 131
Query: 153 DTDGRQLYSSLTH-DHPISSLAW 174
G L S L + +AW
Sbjct: 132 SRSG-MLRSVLAQFATAVYCVAW 153
>FB|FBgn0032891 [details] [associations]
symbol:Oseg5 "Oseg5" species:7227 "Drosophila melanogaster"
[GO:0042384 "cilium assembly" evidence=ISM;IEP] [GO:0031513
"nonmotile primary cilium" evidence=IDA] [GO:0035058 "nonmotile
primary cilium assembly" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:AE014134 Gene3D:2.130.10.10
SUPFAM:SSF50978 eggNOG:COG2319 GO:GO:0035058 OMA:WSRSGML
GeneTree:ENSGT00440000033499 RefSeq:NP_610064.2 UniGene:Dm.26851
ProteinModelPortal:Q9VII8 SMR:Q9VII8 STRING:Q9VII8
EnsemblMetazoa:FBtr0290042 GeneID:35349 KEGG:dme:Dmel_CG9333
UCSC:CG9333-RB CTD:35349 FlyBase:FBgn0032891 InParanoid:Q9VII8
OrthoDB:EOG4GTHV1 PhylomeDB:Q9VII8 GenomeRNAi:35349 NextBio:793104
ArrayExpress:Q9VII8 Bgee:Q9VII8 Uniprot:Q9VII8
Length = 775
Score = 316 (116.3 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 55/137 (40%), Positives = 89/137 (64%)
Query: 87 AAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKY 146
A W+P+SN ++ Q + IKPL+ N+K +W+AHDGL+L ++W + +++I SGGED ++
Sbjct: 168 ARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRF 227
Query: 147 KASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHS---LDK 203
K +WD G L++S ++ I+S+A+ P D VG++N L+LC GWS++
Sbjct: 228 K---IWDAQGANLFTSAAEEYAITSVAFNPEKDYLLVGTFNLLKLCHSNGWSYNTARFSS 284
Query: 204 PDTGSVYDLVWSNDATQ 220
P GS+++L WS D TQ
Sbjct: 285 PRVGSIFNLSWSADGTQ 301
Score = 118 (46.6 bits), Expect = 0.00067, P = 0.00067
Identities = 48/213 (22%), Positives = 84/213 (39%)
Query: 120 AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGD 179
AH I W +L+ GED K +W G + + ++ I WAP +
Sbjct: 119 AHAAAISSGRWSPDGAGLLTAGEDGVIK---IWSRSGMLRSTVVQNEESIRCARWAPNSN 175
Query: 180 --MFAVGSYNTLR-LCDK---VGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFD 233
+F G + +++ L + W + G V L WS + IA + F
Sbjct: 176 SIVFCQGGHISIKPLAANSKIIRW-----RAHDGLVLSLSWSTQSNIIASGGEDFR--FK 228
Query: 234 IXXXXXXNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS---LDKPD 290
I N+ + + IT +A N V + + + + WS++ P
Sbjct: 229 IWDAQGANLFTSAAEEYAITSVAFNPEKDYLL--VGTFNLLKLCHSNGWSYNTARFSSPR 286
Query: 291 TGSVYDLVWSSDATQIAGACANGSLLLGTIIQR 323
GS+++L WS+D TQ + G L++ I++
Sbjct: 287 VGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQ 319
Score = 94 (38.1 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 228 VIHIFDIXXXXXXNVTA-PLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSL 286
V+H+FD+ L ++ Q+A + GS +++ VAFID NR+L++S S +L
Sbjct: 458 VLHLFDLIPGASRQYDPHSLRAKQQLVQIAACRAGSPEDQFVAFIDSNRELFVSE-SRNL 516
Query: 287 DKPDTGSVYDL-------VWSSDATQIAG 308
+ +Y + +W+S+ + G
Sbjct: 517 NSERIDEIYKIGTQLTAIMWASETNILVG 545
>UNIPROTKB|F1N0G0 [details] [associations]
symbol:F1N0G0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060349 "bone morphogenesis" evidence=IEA] [GO:0060271
"cilium morphogenesis" evidence=IEA] [GO:0007224 "smoothened
signaling pathway" evidence=IEA] [GO:0005929 "cilium" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0001649 "osteoblast
differentiation" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005813 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005929 InterPro:IPR011044 SUPFAM:SSF50969
OMA:WSRSGML GeneTree:ENSGT00440000033499 EMBL:DAAA02002421
EMBL:DAAA02002422 EMBL:DAAA02002423 EMBL:DAAA02002424
EMBL:DAAA02002425 IPI:IPI00904280 Ensembl:ENSBTAT00000044761
Uniprot:F1N0G0
Length = 764
Score = 256 (95.2 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
Identities = 54/161 (33%), Positives = 80/161 (49%)
Query: 68 WPQALSLCRTL-NVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLIL 126
W + L TL + VYS W PD L T +K +P P ++ L L
Sbjct: 121 WSKTGMLRSTLAHQGMSVYSITWPPDVKIYLYTSSKEKSERPWQPTPVLLPGKSPSSLFL 180
Query: 127 KVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY 186
++ W LI+ ED K + W +LY HD AW G++ + +
Sbjct: 181 RLQWYHQKSLIIDQSEDIKKR----WQESTEELYKKDLHDPDNHDGAWRADGNLLKILTV 236
Query: 187 NTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACAN 227
+TL +C + GWS++L+KP+TGS++++ WS D TQIAGAC N
Sbjct: 237 DTLSICGETGWSYALEKPNTGSIFNIAWSVDGTQIAGACGN 277
Score = 139 (54.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 20 DYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCR 76
D E P ++ FV N +TIRR DG++++ ISPY ++LH Y +S W A+ LCR
Sbjct: 540 DASEFSKNPHIVSFVGNQVTIRRADGSLVHISISPYPAILHEYVSSSKWEDAVRLCR 596
Score = 137 (53.3 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 20/42 (47%), Positives = 34/42 (80%)
Query: 282 WSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLLGTIIQR 323
WS++L+KP+TGS++++ WS D TQIAGAC NG ++ ++++
Sbjct: 247 WSYALEKPNTGSIFNIAWSVDGTQIAGACGNGHVVFAHVVEQ 288
Score = 116 (45.9 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
Identities = 32/99 (32%), Positives = 50/99 (50%)
Query: 215 SNDATQIAG-ACANVIHIFDIXXXXXXNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK 273
SND I A +I +F+ LSH +E+ ++A++Q G +R +AFIDK
Sbjct: 412 SNDTIAIKDKADEKIIFLFEASTGKPMGDGKFLSHKNEVLEIALDQKGLTNDRKIAFIDK 471
Query: 274 NRDLYL-SMWSHSLDKP--DTGS-VYDLVWSSDATQIAG 308
NRDLY+ S+ ++ G+ V+ L WS + G
Sbjct: 472 NRDLYITSVKRFGKEEQIIKLGTMVHTLAWSDTCNILCG 510
Score = 70 (29.7 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDH-PISSLAWAP 176
+AH G +L W +++ GED + K +W G L S+L H + S+ W P
Sbjct: 91 EAHSGAVLAGRWNYEGTALVTVGEDGQIK---IWSKTG-MLRSTLAHQGMSVYSITWPP 145
Score = 47 (21.6 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 16/63 (25%), Positives = 23/63 (36%)
Query: 156 GRQLYSSLTHDHPISSLAWA-PGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVW 214
GR S H + + W G + VG +++ K G S SVY + W
Sbjct: 84 GRVEKSVEAHSGAVLAGRWNYEGTALVTVGEDGQIKIWSKTGMLRSTLAHQGMSVYSITW 143
Query: 215 SND 217
D
Sbjct: 144 PPD 146
Score = 47 (21.6 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 22/88 (25%), Positives = 34/88 (38%)
Query: 90 SPDSNKVLLTQAKSLVIKPL-SPNNKATKWQAHDGLILKVAWCSSTDLILSGG-----ED 143
S D K + L K L P+N W+A DG +LK+ + + G E
Sbjct: 195 SEDIKKRWQESTEELYKKDLHDPDNHDGAWRA-DGNLLKILTVDTLSICGETGWSYALEK 253
Query: 144 CKYKASF--VWDTDGRQLYSSLTHDHPI 169
+ F W DG Q+ + + H +
Sbjct: 254 PNTGSIFNIAWSVDGTQIAGACGNGHVV 281
Score = 37 (18.1 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 253 TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKP 289
T + QT SL +A DK + + ++ S KP
Sbjct: 401 TDILNAQTVSLSNDTIAIKDKADEKIIFLFEASTGKP 437
>ASPGD|ASPL0000006214 [details] [associations]
symbol:AN6385 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 PROSITE:PS00678 InterPro:IPR019775
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320 EMBL:BN001301
InterPro:IPR011047 SUPFAM:SSF50998 EMBL:AACD01000108
HOGENOM:HOG000091642 RefSeq:XP_663989.1 ProteinModelPortal:Q5AZ95
EnsemblFungi:CADANIAT00006594 GeneID:2871285 KEGG:ani:AN6385.2
OMA:LHPFEGH OrthoDB:EOG42NN9D Uniprot:Q5AZ95
Length = 434
Score = 132 (51.5 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 61/219 (27%), Positives = 97/219 (44%)
Query: 68 WPQAL-SLCRTLNV-SPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQ--AHDG 123
W A+ SL T+ S V S A+SPD ++L + + IK K H
Sbjct: 140 WNPAIGSLKHTIEGHSDWVLSVAFSPDG-QLLASGSAEKTIKLWDSATCGLKHTLGGHSN 198
Query: 124 LILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT-HDHPISSLAWAPGGDMFA 182
+L + + L+ SG D K +WD L +L H + I SLA++P G + A
Sbjct: 199 WVLPLVFSPDGRLLASGSNDATIK---LWDPPSGSLKHTLEGHSNKIESLAFSPNGQLLA 255
Query: 183 VGSYN-TLRLCDKVGWS--HSLDKPDTGSVYDLVWSNDATQI-AGACANVIHIFDIXXXX 238
GS + T++L D S H+L K + V +V+S D+ + +G+ N I ++D
Sbjct: 256 SGSSDATIKLWDTATGSFRHTL-KGHSDMVLSVVFSPDSQLLESGSGDNTIKLWDPATGI 314
Query: 239 XXN------VTAPLSHSHEITQLAVNQ-TGSLQERHVAF 270
+ + + S E+ QL N T S+Q H +
Sbjct: 315 LKHSMRTPGIVRSIEFSIELPQLITNLGTFSIQAWHTGY 353
>FB|FBgn0036354 [details] [associations]
symbol:Poc1 "Proteome of centrioles 1" species:7227
"Drosophila melanogaster" [GO:0051297 "centrosome organization"
evidence=IMP] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 EMBL:AE014296 GO:GO:0051297 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 HSSP:P16649
GeneTree:ENSGT00700000104282 KO:K16482 EMBL:AY069349
RefSeq:NP_648640.1 UniGene:Dm.2164 ProteinModelPortal:Q9VU65
SMR:Q9VU65 STRING:Q9VU65 PaxDb:Q9VU65 PRIDE:Q9VU65
EnsemblMetazoa:FBtr0075863 GeneID:39502 KEGG:dme:Dmel_CG10191
UCSC:CG10191-RA CTD:39502 FlyBase:FBgn0036354 InParanoid:Q9VU65
OMA:PIYTLTG OrthoDB:EOG4DZ09Q PhylomeDB:Q9VU65 GenomeRNAi:39502
NextBio:813979 Bgee:Q9VU65 Uniprot:Q9VU65
Length = 391
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 60/261 (22%), Positives = 107/261 (40%)
Query: 70 QALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQ--AHDGLILK 127
QA R + S PV AWSP N V + +K P + + AH +
Sbjct: 49 QAARCIRFASHSAPVNGVAWSPKGNLVA-SAGHDRTVKIWEPKLRGVSGEFVAHSKAVRS 107
Query: 128 VAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHP-ISSLAWAPGGDMFAVGSY 186
V + S+ L+L+ +D K++ +W RQ SS + + S ++P G + A S
Sbjct: 108 VDFDSTGHLMLTASDD---KSAKIWRVARRQFVSSFAQQNNWVRSAKFSPNGKLVATASD 164
Query: 187 N-TLRLCD-KVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA-NVIHIFDIXXXXXXNVT 243
+ ++R+ D G + + L W +A A N I IFD+ +
Sbjct: 165 DKSVRIYDVDSGECVRTFTEERAAPRQLAWHPWGNMLAVALGCNRIKIFDVSGSQLLQLY 224
Query: 244 APLSHSHEITQLAVNQTGSL-----QERHVAFID--KNRDLYLSMWSHSLDKPDTGSVYD 296
+ HS + +A + +G +R + +D + R +Y ++ H T +V
Sbjct: 225 --VVHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLEGRPIY-TLTGH------TDAVNA 275
Query: 297 LVWSSDATQIAGACANGSLLL 317
+ +S D + A ++ LL+
Sbjct: 276 VAFSRDGDKFATGGSDRQLLV 296
>MGI|MGI:2442513 [details] [associations]
symbol:Eml5 "echinoderm microtubule associated protein like
5" species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856 "cytoskeleton"
evidence=IEA] [GO:0005874 "microtubule" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 MGI:MGI:2442513 GO:GO:0005737
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 GO:GO:0005874 InterPro:IPR005108
Pfam:PF03451 GeneTree:ENSGT00550000074369 CTD:161436
HOGENOM:HOG000031037 HOVERGEN:HBG107846 OMA:LMVWTNE EMBL:AC159193
EMBL:AK044024 EMBL:AK047762 EMBL:BC027154 IPI:IPI00469110
RefSeq:NP_001074660.1 UniGene:Mm.390484 UniGene:Mm.446675
UniGene:Mm.447154 UniGene:Mm.463212 ProteinModelPortal:Q8BQM8
SMR:Q8BQM8 PhosphoSite:Q8BQM8 PaxDb:Q8BQM8 PRIDE:Q8BQM8
Ensembl:ENSMUST00000065716 GeneID:319670 KEGG:mmu:319670
UCSC:uc007orn.1 InParanoid:Q8BQM8 OrthoDB:EOG4W3SM4 NextBio:395188
Bgee:Q8BQM8 CleanEx:MM_EML5 Genevestigator:Q8BQM8 Uniprot:Q8BQM8
Length = 1977
Score = 125 (49.1 bits), Expect = 0.00033, P = 0.00033
Identities = 56/248 (22%), Positives = 99/248 (39%)
Query: 68 WPQALSLCRTLNVSP-PVYSAAWSP--DSNKVLLTQAKSLVIKPLSPNNKATKW--QAH- 121
W Q L CR + V S K+L+ S +I+ + N A H
Sbjct: 1643 WDQELRRCRAFRLETGQVTDCVRSVCRGKGKILVGTRNSEIIE-VGEKNAACNILVNGHV 1701
Query: 122 DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMF 181
DG I +A S D LS ED + +WD +++ + + H ++ ++P GDM
Sbjct: 1702 DGPIWGLATHPSRDFFLSAAEDGTVR---LWDIADKKMLNKVNLGHAARTVCYSPEGDMV 1758
Query: 182 AVGSYN---TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIA-GACANVIHIFDIXX 236
A+G N + L + W D+ +++D+ +S D+ +A G+ N + +D+
Sbjct: 1759 AIGMKNGEFIILLVSSLKIWGKKRDR--RCAIHDIRFSPDSRYLAVGSSENSVDFYDLTL 1816
Query: 237 XXXXNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK--NRDLY-LSMWSHSLDKPDTGS 293
N +S+ +I + S RH+ R +Y + H +D
Sbjct: 1817 GPTLN---RISYCKDIPSFVIQMDFSADSRHLQVSSGCYKRHVYEVPSGKHLVDHAAIDR 1873
Query: 294 VYDLVWSS 301
+ W+S
Sbjct: 1874 ITWATWTS 1881
>RGD|1303275 [details] [associations]
symbol:Eml5 "echinoderm microtubule associated protein like 5"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
RGD:1303275 GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319 GO:GO:0005874
InterPro:IPR005108 Pfam:PF03451 CTD:161436 HOGENOM:HOG000031037
HOVERGEN:HBG107846 OrthoDB:EOG4W3SM4 EMBL:AY445136
EMBL:AABR03048720 EMBL:AABR03052861 EMBL:AABR03050388
EMBL:AABR03049430 IPI:IPI00464459 IPI:IPI00768222 IPI:IPI00844826
IPI:IPI00844842 RefSeq:XP_003750263.1 UniGene:Rn.19254
UniGene:Rn.232228 ProteinModelPortal:Q6ED65 PhosphoSite:Q6ED65
PRIDE:Q6ED65 GeneID:444982 KEGG:rno:444982 UCSC:RGD:1303275
InParanoid:Q6ED65 Genevestigator:Q6ED65 Uniprot:Q6ED65
Length = 1977
Score = 125 (49.1 bits), Expect = 0.00033, P = 0.00033
Identities = 56/248 (22%), Positives = 99/248 (39%)
Query: 68 WPQALSLCRTLNVSP-PVYSAAWSP--DSNKVLLTQAKSLVIKPLSPNNKATKW--QAH- 121
W Q L CR + V S K+L+ S +I+ + N A H
Sbjct: 1643 WDQELRRCRAFRLETGQVTDCVRSVCRGKGKILVGTRNSEIIE-VGEKNAACNILVNGHV 1701
Query: 122 DGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMF 181
DG I +A S D LS ED + +WD +++ + + H ++ ++P GDM
Sbjct: 1702 DGPIWGLATHPSRDFFLSAAEDGTVR---LWDIADKKMLNKVNLGHAARTVCYSPEGDMV 1758
Query: 182 AVGSYN---TLRLCDKVG-WSHSLDKPDTGSVYDLVWSNDATQIA-GACANVIHIFDIXX 236
A+G N + L + W D+ +++D+ +S D+ +A G+ N + +D+
Sbjct: 1759 AIGMKNGEFIILLVSSLKIWGKKRDR--RCAIHDIRFSPDSRYLAVGSSENSVDFYDLTL 1816
Query: 237 XXXXNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDK--NRDLY-LSMWSHSLDKPDTGS 293
N +S+ +I + S RH+ R +Y + H +D
Sbjct: 1817 GPTLN---RISYCKDIPSFVIQMDFSADSRHLQVSSGCYKRHVYEVPSGKHLVDHAAIDR 1873
Query: 294 VYDLVWSS 301
+ W+S
Sbjct: 1874 ITWATWTS 1881
>UNIPROTKB|D4A992 [details] [associations]
symbol:D4A992 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003779 "actin binding" evidence=IEA]
[GO:0005856 "cytoskeleton" evidence=IEA] [GO:0030833 "regulation of
actin filament polymerization" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 InterPro:IPR017383
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0005856
GeneTree:ENSGT00390000008339 OrthoDB:EOG4NZTTG GO:GO:0030833
PANTHER:PTHR10709 IPI:IPI00957476 Ensembl:ENSRNOT00000066198
Uniprot:D4A992
Length = 329
Score = 115 (45.5 bits), Expect = 0.00040, P = 0.00040
Identities = 61/240 (25%), Positives = 99/240 (41%)
Query: 83 PVYSAAWSPDSNKVLLTQAKSLVI---KPLSPNNKATKWQAHDGLILKVAWCSSTDLILS 139
P+ AW+ D ++ L+ V K S KA + + H+G I + W +D I++
Sbjct: 10 PITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWTKAHELKEHNGHITGIDWAPKSDRIVT 69
Query: 140 GGEDCKYKASFVWDT-DG--RQLYSSLTHDHPISSLAWAPGGDMFAVGS-YNTLRLC--- 192
G D + ++VW DG + L + + + W+P + FAVGS + +C
Sbjct: 70 CGAD---RNAYVWSQKDGIWKPTLVILRINRAATFVKWSPLENKFAVGSGARLISVCYFE 126
Query: 193 -DKVGW-SHSLDKPDTGSVYDLVWS-NDATQIAGACANVIHIFD-IXXXXXXNVT-APLS 247
+ W S + KP +V L W N+ AG+C + D N T P
Sbjct: 127 SENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVIDGWEPPGAGNPTPVPCK 186
Query: 248 HSHEITQLAVNQTGSLQE---RHVAFIDKNRDLYLSMWSHSLDKPDTGSVY---DLVWSS 301
S + + GSL E R V++ + + + W S P TG+ D +W S
Sbjct: 187 SSIPFSNTTQKRDGSLGEGWSRSVSYTSLSGER--AQWVRS---PRTGTKAERTDSLWVS 241
>DICTYBASE|DDB_G0282189 [details] [associations]
symbol:tupA "transcriptional repressor TUP1"
species:44689 "Dictyostelium discoideum" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
dictyBase:DDB_G0282189 GO:GO:0005634 GO:GO:0006355
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GenomeReviews:CM000152_GR eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006351 EMBL:AAFI02000046
HSSP:P16649 KO:K06666 InterPro:IPR013890 Pfam:PF08581
ProDom:PD010558 EMBL:AF079369 RefSeq:XP_640309.1
ProteinModelPortal:O76734 SMR:O76734 STRING:O76734 PRIDE:O76734
EnsemblProtists:DDB0214909 GeneID:8623485 KEGG:ddi:DDB_G0282189
OMA:HNSVVCC ProtClustDB:CLSZ2729020 Uniprot:O76734
Length = 579
Score = 118 (46.6 bits), Expect = 0.00046, P = 0.00046
Identities = 53/219 (24%), Positives = 99/219 (45%)
Query: 84 VYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATK--WQAHDGLILKVAWCSSTDLILSGG 141
+ S +SPD N L T A+ +K + K + + H+ I + + S I+SG
Sbjct: 330 IRSVCFSPDGN-YLATGAEDKTVKVWDIHTKKIQHTFYGHELDIYSLDYSSDGRFIVSGS 388
Query: 142 EDCKYKASFVWDTDGRQLYSSLTHDH--P---ISSLAWAPGGDMFAVGSY-NTLRLCD-K 194
D K K +WD + + +L ++ P ++S+A +P G + A GS N +RL D +
Sbjct: 389 GDKKAK---IWDIEKGKCAFTLGNEEVGPKNGVTSVAMSPDGRLVAAGSLDNIVRLWDAQ 445
Query: 195 VGWSHSLDKPDTGSVYDLVWSNDATQIA-GACANVIHIFDIXXXXXXNVTAPLSHSHE-- 251
G+ + SVY + +S D +A G+ + ++D+ + + H+
Sbjct: 446 TGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKSLKLWDLSGSRSRSRCRATFNGHKDF 505
Query: 252 ITQLAVNQTGSL-----QERHVAFID-KNRDLYLSMWSH 284
+ +A + GS ++R V F D +N ++ + H
Sbjct: 506 VLSVAFSPDGSWLISGSKDRSVQFWDPRNGTTHMMLQGH 544
>ZFIN|ZDB-GENE-040426-1110 [details] [associations]
symbol:strap "serine/threonine kinase receptor
associated protein" species:7955 "Danio rerio" [GO:0016310
"phosphorylation" evidence=IEA] [GO:0016301 "kinase activity"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 ZFIN:ZDB-GENE-040426-1110 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0016301 HSSP:P16649
GeneTree:ENSGT00630000089849 EMBL:BX649476 CTD:11171
HOGENOM:HOG000174258 HOVERGEN:HBG055228 KO:K13137 OMA:LWQTTVG
OrthoDB:EOG4CRM0M EMBL:BC049525 EMBL:BC065428 IPI:IPI00506790
RefSeq:NP_956598.1 UniGene:Dr.12320 STRING:Q7ZW92 DNASU:393274
Ensembl:ENSDART00000013224 Ensembl:ENSDART00000124627 GeneID:393274
KEGG:dre:393274 InParanoid:Q7ZW92 NextBio:20814331 Uniprot:Q7ZW92
Length = 329
Score = 113 (44.8 bits), Expect = 0.00067, P = 0.00067
Identities = 35/122 (28%), Positives = 57/122 (46%)
Query: 84 VYSAAWSPDSNKVLLTQAKSLVIK--PLS-PNNKATKWQAHDGLILKVAWCSSTDLILSG 140
V S ++ DSN LLT V++ LS P + + H I K WC++ ILS
Sbjct: 103 VKSVNFTQDSN-YLLTGGNDKVLRIYDLSKPEAEPQEIAGHTSAIKKALWCNNDQQILSA 161
Query: 141 GEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHS 200
+D K +WD + + +L+ D +SS+ + P G+ + T+ + +HS
Sbjct: 162 ADD---KTIRLWDKNTNEAVKTLSFDASVSSMEYIPDGETLVITYGRTIAFYN----AHS 214
Query: 201 LD 202
LD
Sbjct: 215 LD 216
>TAIR|locus:2025732 [details] [associations]
symbol:RAE1 "AT1G80670" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005635
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 EMBL:AC011713 EMBL:U53501
GO:GO:0080008 HOGENOM:HOG000208823 KO:K14298 OMA:RVAIQYV
EMBL:AY087683 IPI:IPI00547787 PIR:A96839 PIR:S71241
RefSeq:NP_178182.1 UniGene:At.24472 ProteinModelPortal:Q38942
SMR:Q38942 IntAct:Q38942 STRING:Q38942 PaxDb:Q38942 PRIDE:Q38942
EnsemblPlants:AT1G80670.1 GeneID:844406 KEGG:ath:AT1G80670
GeneFarm:2856 TAIR:At1g80670 InParanoid:Q38942 PhylomeDB:Q38942
ProtClustDB:CLSN2681924 Genevestigator:Q38942 GermOnline:AT1G80670
Uniprot:Q38942
Length = 349
Score = 113 (44.8 bits), Expect = 0.00075, P = 0.00075
Identities = 40/150 (26%), Positives = 67/150 (44%)
Query: 120 AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDT-DGRQLYSSLTHDHPISSLAWAPGG 178
+HD +L AW + SGG D K + +W G Q + H+ PI+++AW PG
Sbjct: 70 SHDQPVLCSAWKDDGTTVFSGGCD---KQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGM 126
Query: 179 DMFAVGSYN-TLRLCDKVGWS--HSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDIX 235
++ A GS++ TL+ D + H+ PD Y L + + A N+I +F++
Sbjct: 127 NLLATGSWDKTLKYWDTRQQNPVHTQQLPD--KCYTLSVKHPLMVVGTADRNLI-VFNLQ 183
Query: 236 X--XXXXNVTAPLSHSHEITQLAVNQTGSL 263
+ +PL + +Q G L
Sbjct: 184 NPQTEFKRIQSPLKYQTRCVTAFPDQQGFL 213
>FB|FBgn0010356 [details] [associations]
symbol:Taf5 "TBP-associated factor 5" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0005669 "transcription factor TFIID complex"
evidence=ISS;IDA;IPI] [GO:0001075 "RNA polymerase II core promoter
sequence-specific DNA binding transcription factor activity
involved in preinitiation complex assembly" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] [GO:0000124 "SAGA complex"
evidence=IPI] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR007582 InterPro:IPR015943 Pfam:PF00400 Pfam:PF04494
PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320 EMBL:AE013599
GO:GO:0022008 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0045944 GO:GO:0000124 GO:GO:0005669 GO:GO:0051123
GeneTree:ENSGT00700000104377 KO:K03130 EMBL:U06460 EMBL:AY051960
PIR:S33263 RefSeq:NP_476957.1 UniGene:Dm.19905
ProteinModelPortal:P49846 SMR:P49846 DIP:DIP-48906N STRING:P49846
PaxDb:P49846 PRIDE:P49846 EnsemblMetazoa:FBtr0088240 GeneID:47900
KEGG:dme:Dmel_CG7704 CTD:6877 FlyBase:FBgn0010356 InParanoid:P49846
OMA:ERQNNQI OrthoDB:EOG4F7M11 PhylomeDB:P49846 GenomeRNAi:47900
NextBio:839215 Bgee:P49846 GermOnline:CG7704 Uniprot:P49846
Length = 704
Score = 110 (43.8 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 52/202 (25%), Positives = 89/202 (44%)
Query: 83 PVYSAAWSPDSNKVLLTQAKSLV-IKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGG 141
PVY A++P+ N +L S + + L + ++ H + V + +S
Sbjct: 452 PVYRCAFAPEMNLLLSCSEDSTIRLWSLLTWSCVVTYRGHVYPVWDVRFAPHGYYFVS-- 509
Query: 142 EDCKY-KASFVWDTDGRQ-LYSSLTHDHPISSLAWAPGGDMFAVGSYN-TLRLCDKV-GW 197
C Y K + +W TD Q L + H + + + P + A GS + T+RL D + G
Sbjct: 510 --CSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNYVATGSSDRTVRLWDNMTGQ 567
Query: 198 SHSLDKPDTGSVYDLVWSNDATQIA-GACANVIHIFDIXXXXXXNVTAPLSHSHEITQLA 256
S L GSV L +S +A G+ + I I+D+ VT L H+ +T +
Sbjct: 568 SVRLMTGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNGSL--VTTLLRHTSTVTTIT 625
Query: 257 VNQTGSLQERHVAFIDKNRDLY 278
++ G++ A +D N L+
Sbjct: 626 FSRDGTVLA--AAGLDNNLTLW 645
Score = 50 (22.7 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 26 SYPEVLRFVKNHLTIRRYDGTVINYPI--SPYISVLHS 61
+Y E+ FV++ L I +++ +++ YPI Y +L S
Sbjct: 119 AYKELRTFVEDSLDIYKHELSMVLYPILVQIYFKILAS 156
>MGI|MGI:1343142 [details] [associations]
symbol:Arpc1b "actin related protein 2/3 complex, subunit
1B" species:10090 "Mus musculus" [GO:0003779 "actin binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0005885 "Arp2/3 protein complex"
evidence=TAS] [GO:0030833 "regulation of actin filament
polymerization" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 InterPro:IPR017383 Pfam:PF00400
PIRSF:PIRSF038093 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
MGI:MGI:1343142 GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 EMBL:CH466529 eggNOG:COG2319
GeneTree:ENSGT00390000008339 HOGENOM:HOG000181752
HOVERGEN:HBG050560 KO:K05757 OrthoDB:EOG4NZTTG GO:GO:0030833
PANTHER:PTHR10709 GO:GO:0005885 CTD:10095 OMA:VLFTYDS
ChiTaRS:ARPC1B EMBL:AF162768 EMBL:AK002274 EMBL:AK005378
EMBL:AK147731 EMBL:AK148145 EMBL:AK159371 EMBL:AK167978
EMBL:AK168774 EMBL:AK172124 EMBL:BC003441 IPI:IPI00125143
RefSeq:NP_075631.2 UniGene:Mm.30010 ProteinModelPortal:Q9WV32
SMR:Q9WV32 IntAct:Q9WV32 STRING:Q9WV32 PhosphoSite:Q9WV32
PaxDb:Q9WV32 PRIDE:Q9WV32 Ensembl:ENSMUST00000085679 GeneID:11867
KEGG:mmu:11867 NextBio:279879 Bgee:Q9WV32 CleanEx:MM_ARPC1B
Genevestigator:Q9WV32 GermOnline:ENSMUSG00000029622 Uniprot:Q9WV32
Length = 372
Score = 113 (44.8 bits), Expect = 0.00083, P = 0.00083
Identities = 40/164 (24%), Positives = 71/164 (43%)
Query: 83 PVYSAAWSPDSNKVLL---TQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILS 139
P+ AW+ D ++ + + K + NK + + H+G + + W ++ I++
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDWAPESNRIVT 69
Query: 140 GGEDCKYKASFVWDTDGRQLYSSLTH---DHPISSLAWAPGGDMFAVGSYN-TLRLC--- 192
G D + ++VW GR +L + + WAP + FAVGS + + +C
Sbjct: 70 CGTD---RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFE 126
Query: 193 -DKVGW--SHSLDKPDTGSVYDLVWS-NDATQIAGACANVIHIF 232
+ W H + KP +V L W N+ AG+C IF
Sbjct: 127 QENDWWVCKH-IKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIF 169
>RGD|2155 [details] [associations]
symbol:Arpc1b "actin related protein 2/3 complex, subunit 1B"
species:10116 "Rattus norvegicus" [GO:0003779 "actin binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0030833 "regulation of actin
filament polymerization" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 InterPro:IPR017383 Pfam:PF00400
PIRSF:PIRSF038093 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
RGD:2155 GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0005856 eggNOG:COG2319 HOGENOM:HOG000181752
HOVERGEN:HBG050560 KO:K05757 OrthoDB:EOG4NZTTG GO:GO:0030833
PANTHER:PTHR10709 CTD:10095 EMBL:AF083269 EMBL:BC062027
IPI:IPI00211512 RefSeq:NP_062162.1 UniGene:Rn.2090
ProteinModelPortal:O88656 SMR:O88656 IntAct:O88656 STRING:O88656
PRIDE:O88656 GeneID:54227 KEGG:rno:54227 InParanoid:O88656
NextBio:610652 ArrayExpress:O88656 Genevestigator:O88656
GermOnline:ENSRNOG00000000991 Uniprot:O88656
Length = 372
Score = 113 (44.8 bits), Expect = 0.00083, P = 0.00083
Identities = 40/164 (24%), Positives = 71/164 (43%)
Query: 83 PVYSAAWSPDSNKVLL---TQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILS 139
P+ AW+ D ++ + + K + NK + + H+G + + W ++ I++
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDWAPESNRIVT 69
Query: 140 GGEDCKYKASFVWDTDGRQLYSSLTH---DHPISSLAWAPGGDMFAVGSYN-TLRLC--- 192
G D + ++VW GR +L + + WAP + FAVGS + + +C
Sbjct: 70 CGTD---RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFE 126
Query: 193 -DKVGW--SHSLDKPDTGSVYDLVWS-NDATQIAGACANVIHIF 232
+ W H + KP +V L W N+ AG+C IF
Sbjct: 127 QENDWWVCKH-IKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIF 169
>UNIPROTKB|O88656 [details] [associations]
symbol:Arpc1b "Actin-related protein 2/3 complex subunit
1B" species:10116 "Rattus norvegicus" [GO:0030833 "regulation of
actin filament polymerization" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 InterPro:IPR017383
Pfam:PF00400 PIRSF:PIRSF038093 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 RGD:2155 GO:GO:0005737 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0005856 eggNOG:COG2319
HOGENOM:HOG000181752 HOVERGEN:HBG050560 KO:K05757 OrthoDB:EOG4NZTTG
GO:GO:0030833 PANTHER:PTHR10709 CTD:10095 EMBL:AF083269
EMBL:BC062027 IPI:IPI00211512 RefSeq:NP_062162.1 UniGene:Rn.2090
ProteinModelPortal:O88656 SMR:O88656 IntAct:O88656 STRING:O88656
PRIDE:O88656 GeneID:54227 KEGG:rno:54227 InParanoid:O88656
NextBio:610652 ArrayExpress:O88656 Genevestigator:O88656
GermOnline:ENSRNOG00000000991 Uniprot:O88656
Length = 372
Score = 113 (44.8 bits), Expect = 0.00083, P = 0.00083
Identities = 40/164 (24%), Positives = 71/164 (43%)
Query: 83 PVYSAAWSPDSNKVLL---TQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILS 139
P+ AW+ D ++ + + K + NK + + H+G + + W ++ I++
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDWAPESNRIVT 69
Query: 140 GGEDCKYKASFVWDTDGRQLYSSLTH---DHPISSLAWAPGGDMFAVGSYN-TLRLC--- 192
G D + ++VW GR +L + + WAP + FAVGS + + +C
Sbjct: 70 CGTD---RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFE 126
Query: 193 -DKVGW--SHSLDKPDTGSVYDLVWS-NDATQIAGACANVIHIF 232
+ W H + KP +V L W N+ AG+C IF
Sbjct: 127 QENDWWVCKH-IKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIF 169
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 323 317 0.00083 116 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 622 (66 KB)
Total size of DFA: 252 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.16u 0.07s 25.23t Elapsed: 00:00:09
Total cpu time: 25.17u 0.07s 25.24t Elapsed: 00:00:09
Start: Thu Aug 15 12:13:44 2013 End: Thu Aug 15 12:13:53 2013