RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11524
(323 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 52.8 bits (125), Expect = 2e-08
Identities = 16/120 (13%), Positives = 42/120 (35%), Gaps = 3/120 (2%)
Query: 117 KWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAP 176
+ H+ I + + + + +G +D + + YS I+S++++
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280
Query: 177 GGDMFAVGSY-NTLRLCDKVGWSHSLD-KPDTGSVYDLVWSNDATQIAGACA-NVIHIFD 233
G + G + D + + V L ++D +A + + I++
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 50.1 bits (118), Expect = 1e-07
Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 11/153 (7%)
Query: 117 KWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT-HDHPISSLAWA 175
+ H G ++ ++ T L +SG D K +WD + T H+ I+++ +
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAK---LWDVREGMCRQTFTGHESDINAICFF 235
Query: 176 PGGDMFAVGSY-NTLRL---CDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA-NVIH 230
P G+ FA GS T RL + + +S + +
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 231 IFDISSSSSSNVTAPLSHSHEITQLAVNQTGSL 263
++D + + V A H + ++ L V G
Sbjct: 296 VWDALKADRAGVLA--GHDNRVSCLGVTDDGMA 326
Score = 36.6 bits (83), Expect = 0.003
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 66 HSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLL-TQAKSLVIKPLSPNNKATKWQAHDGL 124
Q L N+ + S ++S +L + + ++A HD
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 125 ILKVAWCSSTDLILSGGEDCKYKASFVWD 153
+ + + +G D K +W+
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLK---IWN 340
Score = 35.5 bits (80), Expect = 0.007
Identities = 20/203 (9%), Positives = 56/203 (27%), Gaps = 10/203 (4%)
Query: 119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGG 178
+ H I + W + + L++S +D K + ++++ + + A+AP G
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 179 DMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSS 238
+ A G + + + + + + + V D + +
Sbjct: 110 NYVACGGLDNICSIYNLKTREG-NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 239 SSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKP------DTG 292
T + + V + + D +W
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG-ACDASAKLWDVREGMCRQTFTGHES 227
Query: 293 SVYDLVWSSDATQIAGACANGSL 315
+ + + + A + +
Sbjct: 228 DINAICFFPNGNAFATGSDDATC 250
Score = 32.8 bits (73), Expect = 0.052
Identities = 26/245 (10%), Positives = 65/245 (26%), Gaps = 15/245 (6%)
Query: 83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATK-WQAHDGLILKVAWCSSTDLILSGG 141
+Y+ W DS ++ +I S ++ A+ S + + GG
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 142 EDCKYK----ASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGW 197
D + + + + T + + L +
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 198 SHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAV 257
+ + + + + ++GAC ++D+ H +I +
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG--HESDINAICF 234
Query: 258 NQTGSL-----QERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACAN 312
G+ + D D L +SH + + +S + +
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAGYDD 291
Query: 313 GSLLL 317
+ +
Sbjct: 292 FNCNV 296
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 50.2 bits (118), Expect = 1e-07
Identities = 14/129 (10%), Positives = 34/129 (26%), Gaps = 4/129 (3%)
Query: 66 HSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLI 125
+ + + + ++S + P + + S V + H+ +
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV 268
Query: 126 LKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGS 185
L + + +S G+D W T + S + GS
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLN---AWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGS 325
Query: 186 Y-NTLRLCD 193
+ +
Sbjct: 326 GDKKATVYE 334
Score = 45.6 bits (106), Expect = 4e-06
Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 3/120 (2%)
Query: 83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNN-KATKWQAHDGLILKVAWCSSTDLILSGG 141
P YS + D + +I P P + + H ++ V + T + +GG
Sbjct: 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG 70
Query: 142 EDC--KYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSH 199
+ C + S + L D+ I S P G VG + +
Sbjct: 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130
Score = 39.0 bits (89), Expect = 5e-04
Identities = 25/254 (9%), Positives = 55/254 (21%), Gaps = 6/254 (2%)
Query: 69 PQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATK-----WQAHDG 123
P+ TLN V + S + V + + +S + D
Sbjct: 39 PRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDN 98
Query: 124 LILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAV 183
I ++ GGE + R + +LA +P +
Sbjct: 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 184 GSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVT 243
+ + + + + + +
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 244 APLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDA 303
+ +I L TG + L+++ V L ++
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG 277
Query: 304 TQIAGACANGSLLL 317
+ L
Sbjct: 278 KWFVSTGKDNLLNA 291
Score = 32.1 bits (71), Expect = 0.092
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 9/103 (8%)
Query: 168 PISSLAWAPGGDMFAVGSYNTLRLCDKVGWS----HSLDKPDTGSVYDLVWSNDATQIAG 223
P S G M V + + ++L+ V + SN +
Sbjct: 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNH--GEVVCAVTISNPTRHVYT 68
Query: 224 ACANVIHIFDISSSSSSNVTAPLS---HSHEITQLAVNQTGSL 263
+ ++DIS + + + L + I + G
Sbjct: 69 GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 49.0 bits (115), Expect = 3e-07
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 10/158 (6%)
Query: 43 YDGTVINYPISPYISVLHSYAASH-----SWPQALSLCRTLNVSPPVYSAAWSPDSNKVL 97
D TV + ++ H SW S + + P +
Sbjct: 163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222
Query: 98 LTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGR 157
++ K++ + +S HD + V + S ILS +D + VWD +
Sbjct: 223 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR---VWDYKNK 279
Query: 158 QLYSSLT-HDHPISSLAWAPGGDMFAVGSY-NTLRLCD 193
+ +L H+H ++SL + GS T+++ +
Sbjct: 280 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 33.6 bits (75), Expect = 0.025
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT-HDHPISSLAWAPG 177
H + +V + +++S ED K VWD + +L H + +++
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIK---VWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 178 GDMFAVGSYNTLRLCDKVGWSH 199
G + A S +
Sbjct: 71 GKLLASCSADMTIKLWDFQGFE 92
Score = 32.0 bits (71), Expect = 0.081
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 152 WDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCD 193
W + Y+ H P++ + + P + S T+++ D
Sbjct: 3 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD 45
Score = 28.2 bits (61), Expect = 1.3
Identities = 35/257 (13%), Positives = 76/257 (29%), Gaps = 24/257 (9%)
Query: 83 PVYSAAWSPDSNKVLL-TQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGG 141
PV + P + ++ ++ ++ + + + H + +++ S L+
Sbjct: 19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL--AS 76
Query: 142 EDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSL 201
+ + HDH +SS++ P GD S + +V + +
Sbjct: 77 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 136
Query: 202 DK--PDTGSVYDLVWSNDATQIAGACA-NVIHIFDISSSSSSNVTAPLSHSHEITQLAVN 258
V + + D T IA + ++ +++ H E A
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196
Query: 259 QTGSLQERHVAFIDKN------------RDLYLSMWSHSLDKP------DTGSVYDLVWS 300
+ S K RD + MW S V +++
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256
Query: 301 SDATQIAGACANGSLLL 317
S I + +L +
Sbjct: 257 SGGKFILSCADDKTLRV 273
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 43.7 bits (101), Expect = 2e-05
Identities = 12/124 (9%), Positives = 35/124 (28%), Gaps = 7/124 (5%)
Query: 89 WSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKA 148
D +K + K + + + + + G D
Sbjct: 221 EFFDDQGDDYNSSK---RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS- 276
Query: 149 SFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGS-YNTLRLCDKVGWSHSLDKPDTG 207
W+ R+ + + S + A ++ + + +T + + + L+
Sbjct: 277 --CWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIY 334
Query: 208 SVYD 211
++D
Sbjct: 335 IIFD 338
Score = 42.1 bits (97), Expect = 5e-05
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDG----RQLYSSLTHDHPISSLAW 174
QA I + S L+L D V+ D L SL + HP+ +
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLT---VYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 175 APGGDMFAV 183
D+
Sbjct: 65 IDNTDLQIY 73
Score = 33.3 bits (74), Expect = 0.029
Identities = 7/73 (9%), Positives = 20/73 (27%), Gaps = 5/73 (6%)
Query: 165 HDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLD----KPDTGSVYDLVWSNDAT 219
IS + P + + S+ +L + + ++D + + ++
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69
Query: 220 QIAGACANVIHIF 232
I
Sbjct: 70 LQIYVGTVQGEIL 82
Score = 27.5 bits (59), Expect = 2.3
Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 4/75 (5%)
Query: 84 VYSAAWSPDSNKVLLTQAKSLV----IKPLSPNNKATKWQAHDGLILKVAWCSSTDLILS 139
+ P + +L+T + + N + + +L + +TDL +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 140 GGEDCKYKASFVWDT 154
G
Sbjct: 74 VGTVQGEILKVDLIG 88
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 41.4 bits (95), Expect = 8e-05
Identities = 13/116 (11%), Positives = 25/116 (21%)
Query: 84 VYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGED 143
+P +K+ S+ P+ + H S SG
Sbjct: 20 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79
Query: 144 CKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSH 199
+ T + P+ ++W A R +
Sbjct: 80 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 40.9 bits (94), Expect = 1e-04
Identities = 31/283 (10%), Positives = 69/283 (24%), Gaps = 36/283 (12%)
Query: 71 ALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQ----------- 119
+ L ++L+ + V +S D + K+ + +S + +
Sbjct: 52 DVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPEN 111
Query: 120 -------AHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSL 172
+ D I V + + +G ED + + + + D
Sbjct: 112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 171
Query: 173 AWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACA-NVIHI 231
+ + G + G + G V D IA + +
Sbjct: 172 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231
Query: 232 FDISSSSS-----SNVTAPLSHSHEITQLAVNQTGS------------LQERHVAFIDKN 274
+D + S + H + + + G L A +
Sbjct: 232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 291
Query: 275 RDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSLLL 317
S V + + + I + +L
Sbjct: 292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334
Score = 37.1 bits (84), Expect = 0.002
Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 29/302 (9%)
Query: 44 DGTVINYPISPY--ISVLHSYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQA 101
+ T Y +S ++ L +A++ P+ L+ + + + S +SPD +
Sbjct: 82 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 141
Query: 102 KSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYS 161
L+ N K + + L G G+ +
Sbjct: 142 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD-RTVRIWDLRTGQCSLT 200
Query: 162 SLTHDHPISSLAWAPGGDMFAVGSYN---------TLRLCDKVGWSHSLDKPDTGSVYDL 212
D + G A GS + T L +++ + SVY +
Sbjct: 201 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 260
Query: 213 VWSNDATQIAGACA-NVIHIFDISSSSS----------SNVTAPLSHSHEITQLAVNQTG 261
V++ D + + ++++ ++++ + + H + +A Q
Sbjct: 261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320
Query: 262 SL-----QERHVAFID-KNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGSL 315
++R V F D K+ + L + H + A +
Sbjct: 321 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380
Query: 316 LL 317
+
Sbjct: 381 RI 382
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 38.3 bits (87), Expect = 0.001
Identities = 23/131 (17%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 114 KATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT-HDHPISSL 172
+ T + H ++ + +++G +D + V+D+ ++ L+ HD + +L
Sbjct: 4 QRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIR---VYDSINKKFLLQLSGHDGGVWAL 59
Query: 173 AWAPGGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSV----YDLVWSNDATQIAGACANV 228
+A GG + + + T+R+ D + S + + N + G+ N
Sbjct: 60 KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119
Query: 229 IHIFDISSSSS 239
+H++ + SS
Sbjct: 120 LHVWKLPKESS 130
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 37.9 bits (86), Expect = 0.001
Identities = 35/213 (16%), Positives = 64/213 (30%), Gaps = 10/213 (4%)
Query: 83 PVYSAAWSPDSNKVLLTQAKSLVI---KPLSPNNKATKWQAHDGLILKVAWCSSTDLILS 139
P+ AW+ D ++ + V K + + + + H+G + V W ++ I++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 140 GGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGS-------YNTLRLC 192
G D + + L + + WAP FAVGS +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 193 DKVGWSHSLDKPDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEI 252
D H + + N AG+C IF AP ++
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 253 TQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHS 285
+ S V + + + W
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 221
Score = 25.6 bits (54), Expect = 9.4
Identities = 13/116 (11%), Positives = 30/116 (25%), Gaps = 8/116 (6%)
Query: 83 PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGE 142
P+ + + +S+ V V+ + + + + T
Sbjct: 245 PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 304
Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGD----MFAVGSY-NTLRLCD 193
D K + H + +S ++ GG F + + D
Sbjct: 305 DKKAS---SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 37.8 bits (86), Expect = 0.001
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Query: 105 VIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT 164
+ + ++ L + G + +D R+L +
Sbjct: 234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLA----KYDLKQRKLIKAAN 289
Query: 165 HDHPISSLAWAPGGDMFAVGSY-NTLRLCD 193
DH +A+ GD +G N L + +
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 319
Score = 31.6 bits (70), Expect = 0.13
Identities = 16/136 (11%), Positives = 32/136 (23%), Gaps = 14/136 (10%)
Query: 172 LAWAPGGDMFAVGSY-NTLRLCDKVGWS--HSLDKPDTGSVYDLVWSNDATQI--AGACA 226
A G + V +Y N L + D + S PD + + D
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 227 NVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSMWSHSL 286
I+ D ++ +V A +++Y ++
Sbjct: 62 GDIYGID---------LDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQR 112
Query: 287 DKPDTGSVYDLVWSSD 302
+
Sbjct: 113 LNDHYVVKPPRLEVFS 128
Score = 25.9 bits (55), Expect = 7.2
Identities = 9/54 (16%), Positives = 17/54 (31%)
Query: 46 TVINYPISPYISVLHSYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLT 99
T + P P + + L + N+ Y A+ +K+ L
Sbjct: 256 TGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLG 309
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 37.3 bits (84), Expect = 0.002
Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 5/101 (4%)
Query: 119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT--HDHPISSLAWAP 176
H+ I ++ + + S + WD H I+ +
Sbjct: 9 YGHNKAITALSSSADGKTLFSADAEGHIN---SWDISTGISNRVFPDVHATMITGIKTTS 65
Query: 177 GGDMFAVGSYNTLRLCDKVGWSHSLDKPDTGSVYDLVWSND 217
GD+F V + L++ G K +
Sbjct: 66 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
Score = 32.6 bits (72), Expect = 0.053
Identities = 7/89 (7%), Positives = 23/89 (25%), Gaps = 3/89 (3%)
Query: 165 HDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWS--HSLDKPDTGSVYDLVWSNDATQI 221
H+ I++L+ + G + D + + ++
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70
Query: 222 AGACANVIHIFDISSSSSSNVTAPLSHSH 250
+ + + + S + A +
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLS 99
Score = 28.4 bits (61), Expect = 1.2
Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 130 WCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT----HDHPISSLAWAPGGDMFAVGS 185
W + +G D VW+ + + + ++S+ W + + G
Sbjct: 232 WSPDNVRLATGSLDNSVI---VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288
Query: 186 YNTLRLCD 193
+ ++ +
Sbjct: 289 DSNIKFWN 296
Score = 26.9 bits (57), Expect = 3.3
Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 4/120 (3%)
Query: 83 PVYSAAWSPDSNKVLLTQAKSLVIK---PLSPNNKATKWQAHDGLILKVAWCSSTDLILS 139
+ + + S D K L + I + + H +I + S DL
Sbjct: 14 AITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV 72
Query: 140 GGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSH 199
+D + LA + GD+ Y + + +
Sbjct: 73 SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE 132
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 33.4 bits (74), Expect = 0.028
Identities = 8/78 (10%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 118 WQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWD--TDGRQLYSSLTHDHPISSLAWA 175
DL+ +G D ++ + + + H +++L W
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIF---IYSVKRPMKIIKALNAHKDGVNNLLWE 267
Query: 176 PGGDMFAVGSYNTLRLCD 193
+ + G+ ++ +
Sbjct: 268 TPSTLVSSGADACIKRWN 285
Score = 26.8 bits (57), Expect = 3.5
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 110 SPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWD 153
P AH + + W + ++S G D K W+
Sbjct: 246 RPMKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIK---RWN 285
Score = 26.5 bits (56), Expect = 4.1
Identities = 8/94 (8%), Positives = 25/94 (26%), Gaps = 2/94 (2%)
Query: 143 DCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKVGWSHSLD 202
+ K S + S ++ + + + +
Sbjct: 193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 252
Query: 203 KPD--TGSVYDLVWSNDATQIAGACANVIHIFDI 234
+ V +L+W +T ++ I +++
Sbjct: 253 ALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 33.2 bits (74), Expect = 0.031
Identities = 11/106 (10%), Positives = 24/106 (22%), Gaps = 6/106 (5%)
Query: 89 WSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKA 148
D + L + + + + D A + +
Sbjct: 207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLE--- 263
Query: 149 SFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCD 193
+D + + H S+ + G +G L D
Sbjct: 264 --SFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 32.9 bits (73), Expect = 0.044
Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 15/130 (11%)
Query: 68 WPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLV----IKPLSPNNKATKWQAHDG 123
W C ++ N ++ A S V IK H
Sbjct: 202 WDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS 261
Query: 124 LILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLT------HDHPISSLAWAPG 177
+ + + + +++ +D K +WD + +L + + +
Sbjct: 262 AVTCLQFNK--NFVITSSDDGTVK---LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316
Query: 178 GDMFAVGSYN 187
+ AVGS N
Sbjct: 317 KLVCAVGSRN 326
Score = 31.3 bits (69), Expect = 0.16
Identities = 36/282 (12%), Positives = 81/282 (28%), Gaps = 11/282 (3%)
Query: 39 TIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNVSPPVYSAAWSPDSNKVLL 98
T+ + G V + + I + S + A + + + K ++
Sbjct: 52 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111
Query: 99 TQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQ 158
+ ++ ++ + ++SG D K VWD +
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK---VWDPETET 168
Query: 159 LYSSLTHDHPISSLAWAPGGDMFAVGSY-NTLRLCDKVGWSHSLDKPDTGSVYDLVWSND 217
+L H + G GS ++R+ D + S+ + D
Sbjct: 169 CLHTL-QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 227
Query: 218 ATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQ-----ERHVAFID 272
++G + + I+DI + + H+ + + + V D
Sbjct: 228 NILVSGNADSTVKIWDIKTGQCLQTLQG-PNKHQSAVTCLQFNKNFVITSSDDGTVKLWD 286
Query: 273 KNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGACANGS 314
++ G V+ + S+ A NG+
Sbjct: 287 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 33.0 bits (73), Expect = 0.048
Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 71 ALSLCRTLNVSP-----PVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQA----- 120
++SL + P ++ P +N + KS ++ L +
Sbjct: 2 SISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH 61
Query: 121 HDGLILKVAWCSSTD--LILSGGEDCKYKASFV------WDTDGRQLYSSLTHDHPISSL 172
++ V + + SG E K + PIS +
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 173 AWAPGGDMFA 182
+W G
Sbjct: 122 SWDFEGRRLC 131
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 31.1 bits (69), Expect = 0.15
Identities = 24/221 (10%), Positives = 41/221 (18%), Gaps = 26/221 (11%)
Query: 84 VYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKV-------AWCSSTDL 136
A +PD ++ + + A +
Sbjct: 19 GPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLDHAGEIVIPAKHAQHVPSPY 78
Query: 137 ILSGGEDCKYKASF-------VWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN-- 187
+ D K V D D LA+ G D F +
Sbjct: 79 NTAFSADGKRLYVANITPAASVTVIDAVSKKMLSEIDTAACVLAYPAGDDRFTALCESGK 138
Query: 188 TLRLCD----KVGWSHSLDKPDTGSVYDLVWSND---ATQIAGACANVIHIFDISSSSSS 240
L + K D + + + D S +
Sbjct: 139 ALTVTLDANGKEAKRTMSDAFIDVDKDPAFVNASRYKGDYLFTTYGGNVRSADFSGDKPA 198
Query: 241 NVTAPLSHSHEITQLAVNQTGSLQERHVAFIDKNRDLYLSM 281
+ G + A K Y+ M
Sbjct: 199 FGKPWSLLTDAERAEGWRPGGM---QQTAVQAKQNRYYVLM 236
>d1cfza_ c.56.1.1 (A:) Hydrogenase maturating endopeptidase HybD
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 30.2 bits (68), Expect = 0.21
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 17 LGMDYLELLSYPEVLRFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWP--QALSL 74
GM+ L ++ + L ++ + GT++ ++ + + H LS
Sbjct: 44 AGMELLGDMANRDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSA 103
Query: 75 CRTLNVSPP 83
R P
Sbjct: 104 LRFTGEFPK 112
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 30.5 bits (67), Expect = 0.29
Identities = 14/135 (10%), Positives = 35/135 (25%), Gaps = 23/135 (17%)
Query: 82 PPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDG---LILKVAWCSSTDLIL 138
+ A+S + +++ + + + A A + W +
Sbjct: 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV 254
Query: 139 SGGEDCKYKASF-----------------VWDTDGRQLYSSLTHDHPISSLAWAPGGD-- 179
+ V D + + H I S+ +
Sbjct: 255 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPL 314
Query: 180 MFAVGSY-NTLRLCD 193
++A+ + TL + D
Sbjct: 315 LYALSTGDKTLYIHD 329
Score = 27.4 bits (59), Expect = 2.7
Identities = 11/97 (11%), Positives = 20/97 (20%), Gaps = 4/97 (4%)
Query: 84 VYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTDLILSGGED 143
+ + + D + + I + + L L G
Sbjct: 49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT-- 106
Query: 144 CKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDM 180
Y DG+ L P + G
Sbjct: 107 --YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141
>d1ypqa1 d.169.1.1 (A:140-270) Oxidised low density lipoprotein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 28.3 bits (62), Expect = 0.56
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 67 SWPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDG--L 124
+W ++ C +L+ ++ D + ++ + LS N + W DG L
Sbjct: 25 NWEKSQEKCLSLDAKLLKINSTADLDFIQQAISYSSFPFWMGLSRRNPSYPWLWEDGSPL 84
Query: 125 ILKVAWCSSTDLILSGGEDCKYKASFVWDTD 155
+ + C Y +
Sbjct: 85 MPHLFRVRGAVSQTYPSGTCAYIQRGAVYAE 115
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 29.2 bits (64), Expect = 0.65
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 151 VWDTDGRQLYSSLTHDHPISSLAWAPGGD--MFAVGSY-NTLRLCD 193
Q +++ H ++ A G +A + L + D
Sbjct: 298 SVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 27.5 bits (59), Expect = 2.2
Identities = 8/120 (6%), Positives = 29/120 (24%)
Query: 68 WPQALSLCRTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILK 127
+ + + + D+ + + + + + L
Sbjct: 29 QDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNV 88
Query: 128 VAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYN 187
A + + + +++ V G+ + + I+ + A G
Sbjct: 89 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL 148
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 27.5 bits (59), Expect = 2.2
Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 2/239 (0%)
Query: 76 RTLNVSPPVYSAAWSPDSNKVLLTQAKSLVIKPLSPNNKATKWQAHDGLILKVAWCSSTD 135
T+ V A SPD KV + A S + + G + S
Sbjct: 26 ATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDG 85
Query: 136 LILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSYNTLRLCDKV 195
+ S + T + T P+ G ++ + +
Sbjct: 86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINT 145
Query: 196 GWSHSLDK-PDTGSVYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQ 254
++ S + + D T++ A + + I I + ++S + +
Sbjct: 146 VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGI 205
Query: 255 LAVNQTGSLQERHVAFIDKNRDLYLSMWSHSLDKPDTGS-VYDLVWSSDATQIAGACAN 312
+ +V + + + + G + + D ++ A +
Sbjct: 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF 264
Score = 26.0 bits (55), Expect = 6.4
Identities = 19/162 (11%), Positives = 46/162 (28%), Gaps = 3/162 (1%)
Query: 151 VWDTDGRQLYSSLTHDHPISSLAWAPGGDMFAVGSY--NTLRLCDKVGWSHSLDKPDTGS 208
V D ++ +++ +P G V + N + + D ++ + GS
Sbjct: 16 VIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIID-TATNNVIATVPAGS 74
Query: 209 VYDLVWSNDATQIAGACANVIHIFDISSSSSSNVTAPLSHSHEITQLAVNQTGSLQERHV 268
V + + + ++S+ V + LA++ G
Sbjct: 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTN 134
Query: 269 AFIDKNRDLYLSMWSHSLDKPDTGSVYDLVWSSDATQIAGAC 310
+ + S + + D T++ A
Sbjct: 135 NGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVAN 176
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 27.5 bits (59), Expect = 2.7
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 119 QAHDGLILKVAWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTH 165
+AHD I V+ C+ +S D K VWD +
Sbjct: 11 KAHDADIFSVSACN--SFTVSCSGDGYLK---VWDNKLLDNENPKDK 52
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 26.4 bits (56), Expect = 4.7
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 129 AWCSSTDLILSGGEDCKYKASFVWDTDGRQLYSSLTHDHPISSLAWAP 176
+ + +++ + TDGR D + AW+P
Sbjct: 220 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 267
>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon
cuniculi [TaxId: 6035]}
Length = 131
Score = 25.1 bits (55), Expect = 8.5
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 7 RVKMGKSRYGLGMDYLELLSYPEVLRFVKNHLTIRRYDG 45
+ MG+ + L +++LE + +L+ + HL I+ Y G
Sbjct: 93 HLSMGRYAFDLLINFLEERNLTYILKILNQHLDIKVYVG 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.406
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,189,632
Number of extensions: 52376
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 73
Length of query: 323
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,240,546
Effective search space: 295249948
Effective search space used: 295249948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.8 bits)