BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11525
         (244 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1F3W|A Chain A, Recombinant Rabbit Muscle Pyruvate Kinase
 pdb|1F3W|B Chain B, Recombinant Rabbit Muscle Pyruvate Kinase
 pdb|1F3W|C Chain C, Recombinant Rabbit Muscle Pyruvate Kinase
 pdb|1F3W|D Chain D, Recombinant Rabbit Muscle Pyruvate Kinase
 pdb|1F3W|E Chain E, Recombinant Rabbit Muscle Pyruvate Kinase
 pdb|1F3W|F Chain F, Recombinant Rabbit Muscle Pyruvate Kinase
 pdb|1F3W|G Chain G, Recombinant Rabbit Muscle Pyruvate Kinase
 pdb|1F3W|H Chain H, Recombinant Rabbit Muscle Pyruvate Kinase
          Length = 530

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 255 KILGEKGKNIKIISKIENHEGVRRFD 280


>pdb|3N25|A Chain A, The Structure Of Muscle Pyruvate Kinase In Complex With
           Proline, Pyruvate, And Mn2+
 pdb|3N25|B Chain B, The Structure Of Muscle Pyruvate Kinase In Complex With
           Proline, Pyruvate, And Mn2+
 pdb|3N25|C Chain C, The Structure Of Muscle Pyruvate Kinase In Complex With
           Proline, Pyruvate, And Mn2+
 pdb|3N25|D Chain D, The Structure Of Muscle Pyruvate Kinase In Complex With
           Proline, Pyruvate, And Mn2+
 pdb|3N25|E Chain E, The Structure Of Muscle Pyruvate Kinase In Complex With
           Proline, Pyruvate, And Mn2+
 pdb|3N25|F Chain F, The Structure Of Muscle Pyruvate Kinase In Complex With
           Proline, Pyruvate, And Mn2+
 pdb|3N25|G Chain G, The Structure Of Muscle Pyruvate Kinase In Complex With
           Proline, Pyruvate, And Mn2+
 pdb|3N25|H Chain H, The Structure Of Muscle Pyruvate Kinase In Complex With
           Proline, Pyruvate, And Mn2+
          Length = 531

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 256 KILGEKGKNIKIISKIENHEGVRRFD 281


>pdb|1PKM|A Chain A, The Refined Three-Dimensional Structure Of Cat Muscle (M1)
           Pyruvate Kinase, At A Resolution Of 2.6 Angstroms
          Length = 530

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 255 KVLGEKGKNIKIISKIENHEGVRRFD 280


>pdb|1AQF|A Chain A, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
           Phospholactate
 pdb|1AQF|B Chain B, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
           Phospholactate
 pdb|1AQF|C Chain C, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
           Phospholactate
 pdb|1AQF|D Chain D, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
           Phospholactate
 pdb|1AQF|E Chain E, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
           Phospholactate
 pdb|1AQF|F Chain F, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
           Phospholactate
 pdb|1AQF|G Chain G, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
           Phospholactate
 pdb|1AQF|H Chain H, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
           Phospholactate
 pdb|1A5U|A Chain A, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
 pdb|1A5U|B Chain B, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
 pdb|1A5U|C Chain C, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
 pdb|1A5U|D Chain D, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
 pdb|1A5U|E Chain E, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
 pdb|1A5U|F Chain F, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
 pdb|1A5U|G Chain G, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
 pdb|1A5U|H Chain H, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
 pdb|1A49|A Chain A, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
 pdb|1A49|B Chain B, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
 pdb|1A49|C Chain C, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
 pdb|1A49|D Chain D, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
 pdb|1A49|E Chain E, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
 pdb|1A49|F Chain F, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
 pdb|1A49|G Chain G, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
 pdb|1A49|H Chain H, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
          Length = 530

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 255 KILGEKGKNIKIISKIENHEGVRRFD 280


>pdb|1PKN|A Chain A, Structure Of Rabbit Muscle Pyruvate Kinase Complexed With
           Mn2+, K+, And Pyruvate
          Length = 530

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 255 KILGEKGKNIKIISKIENHEGVRRFD 280


>pdb|3SRF|C Chain C, Human M1 Pyruvate Kinase
 pdb|3SRF|A Chain A, Human M1 Pyruvate Kinase
 pdb|3SRF|B Chain B, Human M1 Pyruvate Kinase
 pdb|3SRF|D Chain D, Human M1 Pyruvate Kinase
 pdb|3SRF|E Chain E, Human M1 Pyruvate Kinase
 pdb|3SRF|F Chain F, Human M1 Pyruvate Kinase
 pdb|3SRF|G Chain G, Human M1 Pyruvate Kinase
 pdb|3SRF|H Chain H, Human M1 Pyruvate Kinase
          Length = 551

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 276 KVLGEKGKNIKIISKIENHEGVRRFD 301


>pdb|2G50|A Chain A, The Location Of The Allosteric Amino Acid Binding Site Of
           Muscle Pyruvate Kinase.
 pdb|2G50|B Chain B, The Location Of The Allosteric Amino Acid Binding Site Of
           Muscle Pyruvate Kinase.
 pdb|2G50|C Chain C, The Location Of The Allosteric Amino Acid Binding Site Of
           Muscle Pyruvate Kinase.
 pdb|2G50|D Chain D, The Location Of The Allosteric Amino Acid Binding Site Of
           Muscle Pyruvate Kinase.
 pdb|2G50|E Chain E, The Location Of The Allosteric Amino Acid Binding Site Of
           Muscle Pyruvate Kinase.
 pdb|2G50|F Chain F, The Location Of The Allosteric Amino Acid Binding Site Of
           Muscle Pyruvate Kinase.
 pdb|2G50|G Chain G, The Location Of The Allosteric Amino Acid Binding Site Of
           Muscle Pyruvate Kinase.
 pdb|2G50|H Chain H, The Location Of The Allosteric Amino Acid Binding Site Of
           Muscle Pyruvate Kinase
          Length = 530

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 255 KILGEKGKNIKIISKIENHEGVRRFD 280


>pdb|1F3X|A Chain A, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
 pdb|1F3X|B Chain B, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
 pdb|1F3X|C Chain C, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
 pdb|1F3X|D Chain D, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
 pdb|1F3X|E Chain E, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
 pdb|1F3X|F Chain F, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
 pdb|1F3X|G Chain G, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
 pdb|1F3X|H Chain H, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
          Length = 530

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 255 KILGEKGKNIKIISKIENHEGVRRFD 280


>pdb|4G1N|A Chain A, Pkm2 In Complex With An Activator
 pdb|4G1N|B Chain B, Pkm2 In Complex With An Activator
 pdb|4G1N|C Chain C, Pkm2 In Complex With An Activator
 pdb|4G1N|D Chain D, Pkm2 In Complex With An Activator
          Length = 518

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 243 KVLGEKGKNIKIISKIENHEGVRRFD 268


>pdb|3BJF|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
 pdb|3BJF|B Chain B, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
 pdb|3BJF|C Chain C, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
 pdb|3BJF|D Chain D, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
          Length = 518

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 243 KVLGEKGKNIKIISKIENHEGVRRFD 268


>pdb|1T5A|A Chain A, Human Pyruvate Kinase M2
 pdb|1T5A|B Chain B, Human Pyruvate Kinase M2
 pdb|1T5A|C Chain C, Human Pyruvate Kinase M2
 pdb|1T5A|D Chain D, Human Pyruvate Kinase M2
          Length = 567

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 292 KVLGEKGKNIKIISKIENHEGVRRFD 317


>pdb|4B2D|D Chain D, Human Pkm2 With L-serine And Fbp Bound
          Length = 548

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 273 KVLGEKGKNIKIISKIENHEGVRRFD 298


>pdb|3U2Z|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3U2Z|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3U2Z|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3U2Z|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
          Length = 533

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 258 KVLGEKGKNIKIISKIENHEGVRRFD 283


>pdb|3SRD|A Chain A, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
           Bisphosphate And Oxalate.
 pdb|3SRD|B Chain B, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
           Bisphosphate And Oxalate.
 pdb|3SRD|C Chain C, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
           Bisphosphate And Oxalate.
 pdb|3SRD|D Chain D, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
           Bisphosphate And Oxalate.
 pdb|3SRH|A Chain A, Human M2 Pyruvate Kinase
 pdb|3SRH|B Chain B, Human M2 Pyruvate Kinase
 pdb|3SRH|C Chain C, Human M2 Pyruvate Kinase
 pdb|3SRH|D Chain D, Human M2 Pyruvate Kinase
          Length = 551

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 276 KVLGEKGKNIKIISKIENHEGVRRFD 301


>pdb|1ZJH|A Chain A, Structure Of Human Muscle Pyruvate Kinase (Pkm2)
 pdb|4B2D|A Chain A, Human Pkm2 With L-serine And Fbp Bound.
 pdb|4B2D|B Chain B, Human Pkm2 With L-serine And Fbp Bound.
 pdb|4B2D|C Chain C, Human Pkm2 With L-serine And Fbp Bound
          Length = 548

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 273 KVLGEKGKNIKIISKIENHEGVRRFD 298


>pdb|3GQY|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3GQY|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3GQY|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3GQY|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3GR4|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3GR4|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3GR4|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3GR4|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3H6O|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3H6O|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3H6O|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3H6O|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3ME3|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3ME3|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3ME3|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
 pdb|3ME3|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
          Length = 550

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 275 KVLGEKGKNIKIISKIENHEGVRRFD 300


>pdb|3G2G|A Chain A, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
 pdb|3G2G|B Chain B, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
 pdb|3G2G|C Chain C, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
 pdb|3G2G|D Chain D, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
          Length = 533

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 258 KVLGEKGKNIKIISKIENHEGVRRFD 283


>pdb|3BJT|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
 pdb|3BJT|B Chain B, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
 pdb|3BJT|C Chain C, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
 pdb|3BJT|D Chain D, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
          Length = 530

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 45  KDIGEFGKSPSIVSFVKNHLTIRRYD 70
           K +GE GK+  I+S ++NH  +RR+D
Sbjct: 255 KVLGEKGKNIKIISKIENHEGVRRFD 280


>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii
          Domain Of Human Kiaa1568 Protein
          Length = 117

 Score = 27.3 bits (59), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 24/62 (38%)

Query: 33 ADQGLLRKTVLLKDIGEFGKSPSIVSFVKNHLTIRRYDGTVINYPISPYISVLHSYAASH 92
             G   K   L D+      P +    KN +T+    GT    P S YI    S + S+
Sbjct: 1  GSSGSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSN 60

Query: 93 SW 94
          SW
Sbjct: 61 SW 62


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,688,382
Number of Sequences: 62578
Number of extensions: 252611
Number of successful extensions: 612
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 19
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)