BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11525
(244 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P2H3|IFT80_HUMAN Intraflagellar transport protein 80 homolog OS=Homo sapiens
GN=IFT80 PE=1 SV=3
Length = 777
Score = 250 bits (639), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 112/229 (48%), Positives = 164/229 (71%)
Query: 1 MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
MV ++ WN NIL +QD+ VW++P V+ D+ +L KT+ +D EF K+P IVSFV
Sbjct: 508 MVHTLAWNDTCNILCGLQDTRFIVWYYPNTVYVDRDILPKTLYERDASEFSKNPHIVSFV 567
Query: 61 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
N +TIRR DG++++ I+PY ++LH Y +S W A+ LCR + + +WACLA MA +
Sbjct: 568 GNQVTIRRADGSLVHISITPYPAILHEYVSSSKWEDAVRLCRFVKEQTMWACLAAMAVAN 627
Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
RD+ T+E AYAAI ++DKV YIN IK +P K ++ A + L GNI EAE +LLQ GL+++
Sbjct: 628 RDMTTAEIAYAAIGEIDKVQYINSIKNLPSKESKMAHILLFSGNIQEAEIVLLQAGLVYQ 687
Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFL 229
AIQ++I +NW+RALELA+++KTH+DTVL R+K+L+ K ETN+++L
Sbjct: 688 AIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYL 736
>sp|Q8K057|IFT80_MOUSE Intraflagellar transport protein 80 homolog OS=Mus musculus
GN=Ift80 PE=2 SV=1
Length = 777
Score = 246 bits (629), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 166/230 (72%)
Query: 1 MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
MV ++ W NIL +QD+ VW++P ++ D+ +L KT+ +D E+ K+P IVSFV
Sbjct: 508 MVHTLAWCDTCNILCGIQDTRFTVWYYPNTIYVDRDILPKTLYERDASEYSKNPHIVSFV 567
Query: 61 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
N +TIRR DG++++ ISPY ++LH Y +S W +A+ LCR + + +WACLA MA +
Sbjct: 568 GNQVTIRRADGSLVHISISPYPAILHEYVSSSKWEEAVRLCRFVKEQSMWACLAAMAVAN 627
Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
RD+ T+E AYAA+ ++DKV YIN IK +P + ++ A + + GNI EAE++LLQ GL+++
Sbjct: 628 RDMVTAEIAYAAVGEIDKVRYINAIKDLPSRESKMAHILMFSGNIQEAETVLLQAGLVYQ 687
Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR 230
AIQ++I +NW+RALELA+++KTH+DTVL R+K+LD K ETN+++L+
Sbjct: 688 AIQININLYNWERALELAVKYKTHVDTVLAYRQKFLDTFGKQETNKRYLQ 737
>sp|Q66HB3|IFT80_RAT Intraflagellar transport protein 80 homolog OS=Rattus norvegicus
GN=Ift80 PE=2 SV=1
Length = 777
Score = 244 bits (624), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 165/230 (71%)
Query: 1 MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
MV ++ W NIL +QD+ VW++P V+ D+ +L KT+ +D E+ K+P IVSFV
Sbjct: 508 MVHTLAWCDTCNILCGLQDTRFTVWYYPNAVYVDRDILPKTLYERDASEYSKNPHIVSFV 567
Query: 61 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
N +T+RR DG++++ ISPY ++LH Y +S W A+ LCR + + LWACLA MA +
Sbjct: 568 GNQVTVRRADGSLVHISISPYPAILHEYVSSSKWEDAVRLCRFVKEQSLWACLAAMAVAN 627
Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
RD+ T+E AYAA+ ++DKV YIN +K +P + ++ A + + GNI EAE+ILLQ GL+++
Sbjct: 628 RDMVTAEIAYAAVGEIDKVRYINAMKDLPSRESKMAHILMFSGNIQEAETILLQAGLVYQ 687
Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR 230
AIQ++I +NW+RALELA+++KTH+DTVL R+K+L+ K ETN+++L+
Sbjct: 688 AIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYLQ 737
>sp|Q22830|OSM1_CAEEL Intraflagellar transport protein osm-1 OS=Caenorhabditis elegans
GN=osm-1 PE=2 SV=4
Length = 1737
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 109 LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAA------------QQA 156
+W +A MA +L ++ YAAI V KV ++ I I +A+ +A
Sbjct: 621 MWIRVAEMALEHGNLFVAQRCYAAINDVAKVRKLHDILEIADEASISIGGDGTHFYKVRA 680
Query: 157 EMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELA 198
+ ++G EAE I L+ AI + H WD ALELA
Sbjct: 681 MLAIMGRKFKEAERIFLEQNDTESAIGMYTSLHKWDEALELA 722
>sp|Q9JKU3|IF172_RAT Intraflagellar transport protein 172 homolog OS=Rattus norvegicus
GN=Ift172 PE=1 SV=1
Length = 1749
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 103/255 (40%), Gaps = 36/255 (14%)
Query: 1 MVQSIC----WNTDVNILAAMQDSALCVWF-FPAVVFADQGLLRKTVLLKDIGEFGKSPS 55
M+ + C W ++L A ++LCVW+ A +R V+ + G GK+
Sbjct: 521 MILNFCSYVQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMSSIRGDVVGLERG-GGKTEV 579
Query: 56 IVSFVKNHLTIRRYDG-TVINYPISPYISVLHSYAASHSWPQALSLCRTLN----DDILW 110
+V+ +G T + Y + + + ++ +A + TL + +W
Sbjct: 580 MVT-----------EGVTTVAYTLDEGLIEFGTAIDDGNYTRATAFLETLEMTPETEAMW 628
Query: 111 ACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQ------------AEM 158
L+ +A +R L T+E ++A+ V K +++ I + +++ A +
Sbjct: 629 KTLSKLALEARQLHTAERCFSALGHVAKARFLHETNEIADQVSREYGGEGTDFYQVRARL 688
Query: 159 YLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDN 218
+L N AE I L+ + A+ + H WD + +A K H + R+ Y
Sbjct: 689 AMLEKNYKLAEMIFLEQNAVEEAMDMYQELHRWDECIAVA-EAKGH-PALEKLRRDYYQR 746
Query: 219 LEKIETNEKFLRLQS 233
L + E+ LQ
Sbjct: 747 LMDTQQEERAGELQE 761
>sp|Q9W040|OSM1_DROME Intraflagellar transport protein osm-1 OS=Drosophila melanogaster
GN=osm-1 PE=3 SV=2
Length = 1772
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 31/250 (12%)
Query: 5 ICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFVKNHL 64
+ W +++ A +S L +W+ L + V ++ + + +I +N
Sbjct: 545 VQWVPQSDVVVAQSNSNLAIWYNID--------LPEHVTMQSV----RGEAIEVLRENGR 592
Query: 65 TI-RRYDG-TVINYPISPYISVLHSYAASHSWPQALSLCRTLNDD----ILWACLAGMAT 118
T+ R DG + NY + + + + +A+ +L D +W LA +A
Sbjct: 593 TVVRSQDGPSEHNYQLDEGLVEFGTAVNDSDFGRAVHFLESLGDKPAAKAMWHNLALIAL 652
Query: 119 YSRDLATSEEAYAAIEQVDKVMYINHI----------KGIP--VKAAQQAEMYLLGGNIS 166
+L ++ YAA+ V K Y+ + G P + +A++ LLG ++
Sbjct: 653 EDGNLRVAQRCYAALGNVSKAYYLAGMIQQADEFEESSGSPGILCPEVRAKLALLGSDLR 712
Query: 167 EAESILLQHGLIFRAIQVSILTHNWDRALELALRHK-THIDTVLYQRKKYLDNLEKIETN 225
AE I L+ G I A+++ WD A+ LA R I + Q YL + E+ E
Sbjct: 713 TAERIYLEQGDIESALKMYQQLGMWDEAVALAERRGYNRIAELKQQHMDYLLSSEQQEKA 772
Query: 226 EKFLRLQSEV 235
+ L Q ++
Sbjct: 773 GQVLEEQGDL 782
>sp|Q8NEZ3|WDR19_HUMAN WD repeat-containing protein 19 OS=Homo sapiens GN=WDR19 PE=1 SV=2
Length = 1342
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 94 WPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAA 153
+ A +CR LND+ W LA + ++ + Y I V VM + IKGI
Sbjct: 662 FSDAWEMCRILNDEAAWNELARACLHHMEVEFAIRVYRRIGNVGIVMSLEQIKGIEDYNL 721
Query: 154 QQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRK 213
+ + + + A+ + L A+++ +WD AL+LA +H D + + K
Sbjct: 722 LAGHLAMFTNDYNLAQDLYLASSCPIAALEMRRDLQHWDSALQLA-KHLAP-DQIPFISK 779
Query: 214 KYLDNLE 220
+Y LE
Sbjct: 780 EYAIQLE 786
>sp|Q6VH22|IF172_MOUSE Intraflagellar transport protein 172 homolog OS=Mus musculus
GN=Ift172 PE=1 SV=1
Length = 1749
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 34/220 (15%)
Query: 1 MVQSIC----WNTDVNILAAMQDSALCVWF-FPAVVFADQGLLRKTVLLKDIGEFGKSPS 55
M+ + C W ++L A ++LCVW+ A +R V+ + G GK+
Sbjct: 521 MILNFCSYVQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMSSIRGDVVGLERG-GGKTEV 579
Query: 56 IVSFVKNHLTIRRYDG-TVINYPISPYISVLHSYAASHSWPQALSLCRTLN----DDILW 110
+V+ +G T + Y + + + ++ +A + TL + +W
Sbjct: 580 MVT-----------EGVTTVAYTLDEGLIEFGTAIDDGNYTRATAFLETLEMTPETEAMW 628
Query: 111 ACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQ------------AEM 158
L+ +A +R L T+E ++A+ V K +++ I + +++ A +
Sbjct: 629 KTLSKLALEARQLHTAERCFSALGHVAKARFLHETNEIADQVSREYGGEGTDFYQVRARL 688
Query: 159 YLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELA 198
+L N AE I L+ + A+ + H W+ + +A
Sbjct: 689 AMLEKNYKLAEMIFLEQNAVEEAMDMYQELHRWEECIAVA 728
>sp|Q3UGF1|WDR19_MOUSE WD repeat-containing protein 19 OS=Mus musculus GN=Wdr19 PE=1 SV=1
Length = 1341
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Query: 94 WPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAA 153
+ A +C+ LND W+ LA + ++ + + V VM + IKGI
Sbjct: 662 FSDAWDICKMLNDRTSWSELAKACLHHMEVEFAIRVSRTMGDVGTVMSLEQIKGIEDYNL 721
Query: 154 QQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRK 213
+ + + + A+ + L A+++ +WD AL+LA R D + + K
Sbjct: 722 LAGHLAMFTNDFNLAQDLYLASNCPVAALEMRRDLQHWDSALQLAKRLAP--DQIPFISK 779
Query: 214 KYLDNLE 220
+Y LE
Sbjct: 780 EYAIQLE 786
>sp|A6N6J5|WDR35_RAT WD repeat-containing protein 35 OS=Rattus norvegicus GN=Wdr35 PE=1
SV=1
Length = 1170
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%)
Query: 109 LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEA 168
LW LA A DL T+++A+ + + ++ + + ++ +QAE+ G EA
Sbjct: 687 LWRLLAEAALQKLDLYTAQQAFVRCKDYQGIKFVKRLGNLQSESMKQAEVIAYFGRFEEA 746
Query: 169 ESILLQHGLIFRAIQVSILTHNWDRALEL 197
E + L AI + + +W R L+L
Sbjct: 747 ERMYLDMDRRDLAIGLRLKLGDWFRVLQL 775
>sp|Q9P2L0|WDR35_HUMAN WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1 SV=3
Length = 1181
Score = 37.7 bits (86), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 109 LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEA 168
LW LA A DL T+E+A+ + + ++ + + ++ +QAE+ G EA
Sbjct: 698 LWRLLAEAALQKLDLYTAEQAFVRCKDYQGIKFVKRLGKLLSESMKQAEVVGYFGRFEEA 757
Query: 169 ESILLQHGLIFRAIQVSILTHNWDRALEL 197
E L+ AI + + +W R L+L
Sbjct: 758 ERTYLEMDRRDLAIGLRLKLGDWFRVLQL 786
>sp|B3R0J1|RUVA_PHYMT Holliday junction ATP-dependent DNA helicase RuvA OS=Phytoplasma
mali (strain AT) GN=ruvA PE=3 SV=1
Length = 186
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 127 EEAYAAIEQVDKVMYINHIKGIPVKAAQQ-----------AEMYLLGGNISEAESILLQH 175
E+ + AIE D V Y+ GI +K+AQQ +E +L +E E ILL
Sbjct: 93 EQVFQAIENNDNV-YLRKFPGIGIKSAQQIILKLKGDLIFSEKIILNPKKTELEKILLNL 151
Query: 176 GLIFRAIQVSILTHNWDRA-LELALRH 201
G + + I+ S+L D+ LEL L+
Sbjct: 152 GFVKKEIK-SVLNQIDDKKELELMLKE 177
>sp|Q5DM57|IF172_CHLRE Intraflagellar transport protein 172 OS=Chlamydomonas reinhardtii
GN=IFT172 PE=1 SV=1
Length = 1755
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 24/124 (19%)
Query: 110 WACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEA- 168
W LA A + L +E YAA+ + K +++ + VK AQQA GG+ ++A
Sbjct: 632 WMQLAEQALATNQLVIAERCYAALGDIAKSRFLHKV----VKKAQQAAKEF-GGDGTDAW 686
Query: 169 ----------------ESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQR 212
ES+LL G + AI + H W+ A+ +A TH +
Sbjct: 687 SVRAMMAQLNKQWPVSESLLLAQGKVDDAITLYQDNHRWEDAIRVA--DSTHHANAAALK 744
Query: 213 KKYL 216
++YL
Sbjct: 745 QQYL 748
>sp|A9ULY7|IFT57_XENLA Intraflagellar transport protein 57 homolog OS=Xenopus laevis
GN=ift57 PE=2 SV=2
Length = 411
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 160 LLGGNISEAESILLQHGLIFRAIQVSILTHN--WDRALELALRHKTHIDTVLYQRKKYLD 217
+L N AE IL + + ++V+I T N W ++ +H+ IDT L + K YLD
Sbjct: 211 ILESNTDAAEWIL-EVERVLPQLKVTIRTDNKDWRVHVDQMHQHRDGIDTSLKETKGYLD 269
Query: 218 N--------LEKIETNEKFLRLQSEVIMSGLRT 242
LEK+ + EK++ Q E ++ R+
Sbjct: 270 KLHNEIAKALEKVSSREKYINNQLEQLVQEYRS 302
>sp|Q28HX4|IFT57_XENTR Intraflagellar transport protein 57 homolog OS=Xenopus tropicalis
GN=ift57 PE=2 SV=1
Length = 411
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 160 LLGGNISEAESILLQHGLIFRAIQVSILTHN--WDRALELALRHKTHIDTVLYQRKKYLD 217
+L N AE IL + + ++V+I T N W ++ +H+ IDT L + K YLD
Sbjct: 211 ILESNTDAAEWIL-EVERVLPQLKVTIRTDNKDWRVHVDQMHQHRDGIDTSLKETKGYLD 269
Query: 218 N--------LEKIETNEKFLRLQSEVIMSGLRT 242
LEK+ + EK++ Q E ++ R+
Sbjct: 270 KLHNEVAKALEKVSSREKYINNQLEQLVQEYRS 302
>sp|Q5RHH4|IF172_DANRE Intraflagellar transport protein 172 homolog OS=Danio rerio
GN=ift172 PE=2 SV=1
Length = 1745
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQ----------- 155
+ +W L+ ++ ++ L +E +AA+ V K ++N I A++
Sbjct: 625 EAMWKTLSKLSLEAQQLHIAERCFAALGDVSKARFLNETNKIADAVAKEYDGDGTDHYQV 684
Query: 156 -AEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTH--IDTVLYQR 212
A + +L N AE ++ + +++ H WD + +A K H +D + R
Sbjct: 685 KARLAMLDKNFKLAEMYYMEQNAVDEVMEMYQELHMWDECIAVA-EGKGHPELDNL---R 740
Query: 213 KKYLDNLEKIETNEK 227
+ Y L + NEK
Sbjct: 741 RSYYSYLMETNQNEK 755
>sp|Q8BND3|WDR35_MOUSE WD repeat-containing protein 35 OS=Mus musculus GN=Wdr35 PE=2 SV=3
Length = 1181
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%)
Query: 109 LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEA 168
LW LA A DL T+++A+ + + ++ + + ++ +QAE+ G +A
Sbjct: 698 LWRLLAEAALQKLDLYTAQQAFVRCKDYQGIKFVKLLGNLQSESMKQAEVIAYFGRFEDA 757
Query: 169 ESILLQHGLIFRAIQVSILTHNWDRALEL 197
E + AI + + +W R L+L
Sbjct: 758 ERMYQDMDRRDLAIGLRMKLGDWFRVLQL 786
>sp|Q8F3A0|GATC_LEPIN Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Leptospira interrogans serogroup Icterohaemorrhagiae
serovar Lai (strain 56601) GN=gatC PE=3 SV=1
Length = 96
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 103 TLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVM-YINHIKGIPVKAAQQAEMYL 160
+N+D L +A SR SEE A ++ +K++ Y++ IKG+ V + + E+YL
Sbjct: 2 NINED----SLQKIAELSRLKIRSEEKEATLQDFNKILEYVDQIKGLDVSSIKDDEIYL 56
>sp|Q72SC4|GATC_LEPIC Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Leptospira interrogans serogroup Icterohaemorrhagiae
serovar copenhageni (strain Fiocruz L1-130) GN=gatC PE=3
SV=1
Length = 96
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 103 TLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVM-YINHIKGIPVKAAQQAEMYL 160
+N+D L +A SR SEE A ++ +K++ Y++ IKG+ V + + E+YL
Sbjct: 2 NINED----SLQKIAELSRLKIRSEEKEATLQDFNKILEYVDQIKGLDVSSIKDDEIYL 56
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,123,427
Number of Sequences: 539616
Number of extensions: 3261848
Number of successful extensions: 7488
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 7455
Number of HSP's gapped (non-prelim): 46
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)