Query psy11525
Match_columns 244
No_of_seqs 156 out of 484
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 20:39:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 99.9 9E-22 3.1E-26 191.0 24.9 134 89-222 663-799 (814)
2 3mkq_B Coatomer subunit alpha; 99.9 2.1E-20 7.3E-25 154.3 17.7 132 89-225 16-147 (177)
3 3mkq_A Coatomer beta'-subunit; 98.4 2.4E-05 8.4E-10 75.4 21.2 140 54-199 573-731 (814)
4 1b89_A Protein (clathrin heavy 98.4 4.3E-07 1.5E-11 84.7 7.8 141 90-231 15-233 (449)
5 1xi4_A Clathrin heavy chain; a 98.2 6.1E-05 2.1E-09 78.7 17.4 120 83-202 1080-1248(1630)
6 1xi4_A Clathrin heavy chain; a 97.9 0.0002 6.9E-09 74.8 15.9 134 81-232 988-1132(1630)
7 3vtx_A MAMA; tetratricopeptide 97.7 0.0019 6.5E-08 50.4 14.9 137 88-232 15-168 (184)
8 3mkq_B Coatomer subunit alpha; 97.6 0.00034 1.2E-08 57.3 10.0 90 118-207 58-147 (177)
9 2pl2_A Hypothetical conserved 97.5 0.0013 4.5E-08 53.7 12.3 143 88-230 15-210 (217)
10 2ho1_A Type 4 fimbrial biogene 97.5 0.0068 2.3E-07 49.2 16.4 144 88-231 47-235 (252)
11 3uq3_A Heat shock protein STI1 97.5 0.00093 3.2E-08 54.1 10.9 86 87-177 14-107 (258)
12 2y4t_A DNAJ homolog subfamily 97.4 0.0074 2.5E-07 53.4 16.9 138 86-231 34-203 (450)
13 1xnf_A Lipoprotein NLPI; TPR, 97.4 0.0082 2.8E-07 49.1 15.6 80 88-175 53-137 (275)
14 2xpi_A Anaphase-promoting comp 97.4 0.0027 9.2E-08 58.6 13.9 146 87-232 382-577 (597)
15 2vq2_A PILW, putative fimbrial 97.4 0.01 3.6E-07 46.7 15.5 80 153-232 117-208 (225)
16 3uq3_A Heat shock protein STI1 97.4 0.0058 2E-07 49.3 14.2 146 87-232 47-234 (258)
17 2ho1_A Type 4 fimbrial biogene 97.4 0.0082 2.8E-07 48.7 15.1 79 153-231 109-201 (252)
18 2vq2_A PILW, putative fimbrial 97.3 0.011 3.7E-07 46.6 15.0 134 88-231 18-173 (225)
19 3qou_A Protein YBBN; thioredox 97.3 0.004 1.4E-07 53.2 13.1 83 52-135 80-179 (287)
20 2q7f_A YRRB protein; TPR, prot 97.3 0.01 3.4E-07 47.6 14.7 137 88-232 67-220 (243)
21 3ieg_A DNAJ homolog subfamily 97.3 0.0092 3.2E-07 50.4 14.9 77 156-232 127-215 (359)
22 4gyw_A UDP-N-acetylglucosamine 97.3 0.0062 2.1E-07 59.8 15.4 137 88-232 19-172 (723)
23 3as5_A MAMA; tetratricopeptide 97.2 0.018 6.1E-07 43.6 15.0 138 87-232 17-171 (186)
24 3hym_B Cell division cycle pro 97.2 0.0066 2.3E-07 50.9 13.4 145 88-232 100-297 (330)
25 3hym_B Cell division cycle pro 97.2 0.013 4.4E-07 49.0 14.9 138 88-233 66-221 (330)
26 2xpi_A Anaphase-promoting comp 97.2 0.0079 2.7E-07 55.4 14.6 149 83-231 344-542 (597)
27 3ieg_A DNAJ homolog subfamily 97.2 0.012 4.2E-07 49.6 14.8 79 154-232 239-333 (359)
28 4eqf_A PEX5-related protein; a 97.1 0.0047 1.6E-07 53.4 11.8 84 83-174 70-158 (365)
29 3mkr_A Coatomer subunit epsilo 97.1 0.01 3.5E-07 51.0 13.9 70 162-231 179-261 (291)
30 1w3b_A UDP-N-acetylglucosamine 97.0 0.011 3.7E-07 51.6 13.3 80 153-232 105-196 (388)
31 3gyz_A Chaperone protein IPGC; 97.0 0.0071 2.4E-07 47.3 11.0 79 88-174 46-129 (151)
32 3as5_A MAMA; tetratricopeptide 97.0 0.012 4.2E-07 44.6 12.1 106 87-200 51-169 (186)
33 1hh8_A P67PHOX, NCF-2, neutrop 97.0 0.015 5.1E-07 46.0 13.0 105 88-200 16-146 (213)
34 2q7f_A YRRB protein; TPR, prot 97.0 0.0087 3E-07 47.9 11.3 138 87-232 32-186 (243)
35 2y4t_A DNAJ homolog subfamily 97.0 0.017 5.7E-07 51.1 14.1 77 156-232 264-356 (450)
36 2fo7_A Synthetic consensus TPR 97.0 0.012 4E-07 41.9 10.9 80 87-174 10-94 (136)
37 1w3b_A UDP-N-acetylglucosamine 97.0 0.016 5.4E-07 50.5 13.7 22 153-174 139-160 (388)
38 1fch_A Peroxisomal targeting s 96.9 0.026 8.8E-07 48.3 14.7 79 154-232 222-312 (368)
39 3cv0_A Peroxisome targeting si 96.9 0.034 1.2E-06 46.3 15.0 145 88-232 65-267 (327)
40 3cv0_A Peroxisome targeting si 96.9 0.06 2E-06 44.8 16.3 83 84-174 27-114 (327)
41 4ga2_A E3 SUMO-protein ligase 96.9 0.01 3.5E-07 45.5 10.5 122 91-221 10-149 (150)
42 4eqf_A PEX5-related protein; a 96.9 0.014 5E-07 50.2 12.6 145 88-232 109-308 (365)
43 3nf1_A KLC 1, kinesin light ch 96.9 0.013 4.5E-07 48.5 11.9 140 88-232 37-222 (311)
44 3u4t_A TPR repeat-containing p 96.9 0.011 3.7E-07 48.5 11.2 23 153-175 112-134 (272)
45 2xcb_A PCRH, regulatory protei 96.8 0.016 5.3E-07 43.7 11.0 79 88-174 28-111 (142)
46 3mkr_A Coatomer subunit epsilo 96.8 0.011 3.8E-07 50.7 11.2 131 89-232 76-227 (291)
47 2vgx_A Chaperone SYCD; alterna 96.8 0.015 5E-07 44.7 10.8 79 88-174 31-114 (148)
48 1a17_A Serine/threonine protei 96.8 0.02 6.8E-07 43.0 11.3 80 88-175 23-107 (166)
49 2r5s_A Uncharacterized protein 96.8 0.015 5.3E-07 45.3 10.9 52 83-134 11-67 (176)
50 1fch_A Peroxisomal targeting s 96.7 0.047 1.6E-06 46.6 14.3 147 85-232 71-278 (368)
51 2gw1_A Mitochondrial precursor 96.7 0.074 2.5E-06 47.4 16.0 46 88-133 49-99 (514)
52 3fp2_A TPR repeat-containing p 96.6 0.029 1E-06 50.6 13.3 144 89-232 287-489 (537)
53 3sz7_A HSC70 cochaperone (SGT) 96.6 0.045 1.5E-06 41.9 12.2 80 87-174 20-104 (164)
54 4gco_A Protein STI-1; structur 96.6 0.023 7.7E-07 42.4 10.1 78 88-174 23-106 (126)
55 3nf1_A KLC 1, kinesin light ch 96.5 0.037 1.3E-06 45.7 12.4 108 88-200 79-220 (311)
56 3upv_A Heat shock protein STI1 96.5 0.026 8.7E-07 41.1 10.1 80 87-174 13-97 (126)
57 3vtx_A MAMA; tetratricopeptide 96.5 0.062 2.1E-06 41.4 12.8 120 104-232 2-134 (184)
58 1ouv_A Conserved hypothetical 96.4 0.32 1.1E-05 40.0 17.3 42 91-132 55-103 (273)
59 1hxi_A PEX5, peroxisome target 96.4 0.019 6.4E-07 42.5 8.5 80 86-174 25-110 (121)
60 3u4t_A TPR repeat-containing p 96.3 0.16 5.6E-06 41.2 15.1 140 87-231 12-168 (272)
61 3fp2_A TPR repeat-containing p 96.3 0.064 2.2E-06 48.3 13.5 137 88-232 253-405 (537)
62 2vsy_A XCC0866; transferase, g 96.3 0.037 1.3E-06 51.5 12.0 79 89-175 34-117 (568)
63 3ulq_A Response regulator aspa 96.3 0.091 3.1E-06 45.8 13.9 140 88-232 194-366 (383)
64 3edt_B KLC 2, kinesin light ch 96.2 0.041 1.4E-06 44.6 10.8 135 94-233 24-197 (283)
65 2vyi_A SGTA protein; chaperone 96.2 0.046 1.6E-06 38.7 9.8 78 88-173 22-104 (131)
66 1elw_A TPR1-domain of HOP; HOP 96.2 0.054 1.9E-06 37.6 10.0 79 88-174 14-97 (118)
67 3u3w_A Transcriptional activat 96.2 0.28 9.6E-06 41.2 16.1 141 84-232 81-264 (293)
68 2gw1_A Mitochondrial precursor 96.2 0.049 1.7E-06 48.6 11.8 79 153-231 376-475 (514)
69 1b89_A Protein (clathrin heavy 96.2 0.13 4.4E-06 47.8 14.8 115 88-202 158-309 (449)
70 1na0_A Designed protein CTPR3; 96.2 0.053 1.8E-06 38.0 9.8 46 88-133 19-69 (125)
71 3q49_B STIP1 homology and U bo 96.1 0.032 1.1E-06 40.8 8.8 80 87-174 18-102 (137)
72 3edt_B KLC 2, kinesin light ch 96.1 0.091 3.1E-06 42.4 12.4 108 88-200 53-194 (283)
73 4abn_A Tetratricopeptide repea 96.1 0.019 6.6E-07 52.7 9.1 45 89-133 113-163 (474)
74 4i17_A Hypothetical protein; T 96.1 0.067 2.3E-06 42.9 11.2 105 87-200 16-142 (228)
75 3ro3_A PINS homolog, G-protein 96.1 0.18 6E-06 36.8 12.7 81 88-173 19-113 (164)
76 3gw4_A Uncharacterized protein 96.0 0.043 1.5E-06 42.6 9.6 136 89-232 3-174 (203)
77 3gw4_A Uncharacterized protein 96.0 0.094 3.2E-06 40.6 11.5 107 88-199 36-171 (203)
78 2lni_A Stress-induced-phosphop 96.0 0.043 1.5E-06 39.3 8.7 80 87-174 25-109 (133)
79 4gyw_A UDP-N-acetylglucosamine 95.9 0.03 1E-06 54.9 9.8 103 88-199 53-169 (723)
80 3sf4_A G-protein-signaling mod 95.9 0.21 7.2E-06 42.8 14.3 84 87-175 18-113 (406)
81 4a1s_A PINS, partner of inscut 95.9 0.049 1.7E-06 47.4 10.2 133 94-231 199-369 (411)
82 3ro2_A PINS homolog, G-protein 95.8 0.15 5.1E-06 42.0 12.5 84 87-175 14-109 (338)
83 2pl2_A Hypothetical conserved 95.8 0.036 1.2E-06 44.9 8.5 100 92-200 98-210 (217)
84 3mv2_B Coatomer subunit epsilo 95.8 0.17 5.8E-06 44.7 13.3 106 88-199 110-235 (310)
85 2kck_A TPR repeat; tetratricop 95.8 0.047 1.6E-06 37.7 7.9 81 87-175 15-103 (112)
86 4a1s_A PINS, partner of inscut 95.7 0.24 8.2E-06 42.9 14.1 83 88-175 58-152 (411)
87 2xev_A YBGF; tetratricopeptide 95.7 0.11 3.9E-06 37.2 10.0 80 86-173 10-100 (129)
88 1elr_A TPR2A-domain of HOP; HO 95.7 0.13 4.6E-06 36.3 10.2 83 87-174 13-104 (131)
89 3ulq_A Response regulator aspa 95.6 0.25 8.5E-06 43.0 13.8 136 88-231 113-290 (383)
90 1xnf_A Lipoprotein NLPI; TPR, 95.6 0.17 5.8E-06 41.0 11.9 102 91-200 18-136 (275)
91 3qky_A Outer membrane assembly 95.6 0.084 2.9E-06 43.4 10.0 139 86-232 23-215 (261)
92 2fo7_A Synthetic consensus TPR 95.6 0.1 3.5E-06 36.8 9.2 79 88-174 45-128 (136)
93 4abn_A Tetratricopeptide repea 95.5 0.032 1.1E-06 51.3 7.8 105 88-200 147-283 (474)
94 2h6f_A Protein farnesyltransfe 95.5 0.1 3.5E-06 46.9 11.0 135 89-231 108-266 (382)
95 2dba_A Smooth muscle cell asso 95.5 0.1 3.4E-06 38.1 9.3 81 86-174 36-124 (148)
96 1qqe_A Vesicular transport pro 95.5 0.52 1.8E-05 39.7 14.8 112 84-200 43-183 (292)
97 3urz_A Uncharacterized protein 95.4 0.073 2.5E-06 42.7 8.8 82 86-175 12-114 (208)
98 3ro2_A PINS homolog, G-protein 95.2 0.25 8.5E-06 40.6 11.8 134 94-232 159-330 (338)
99 2vsy_A XCC0866; transferase, g 95.2 0.2 6.7E-06 46.5 12.1 133 91-231 2-154 (568)
100 1wao_1 Serine/threonine protei 95.1 0.034 1.2E-06 51.4 6.6 104 88-199 16-134 (477)
101 3ma5_A Tetratricopeptide repea 95.1 0.54 1.9E-05 32.9 11.9 79 105-197 5-83 (100)
102 1hh8_A P67PHOX, NCF-2, neutrop 95.1 0.21 7.1E-06 39.2 10.4 80 88-175 47-147 (213)
103 2e2e_A Formate-dependent nitri 95.1 0.076 2.6E-06 40.8 7.7 101 90-198 22-138 (177)
104 2c2l_A CHIP, carboxy terminus 95.1 0.16 5.5E-06 42.9 10.3 81 87-175 13-98 (281)
105 3gyz_A Chaperone protein IPGC; 95.0 0.1 3.6E-06 40.5 8.3 108 80-199 10-128 (151)
106 3q15_A PSP28, response regulat 95.0 0.41 1.4E-05 41.6 13.0 140 88-232 192-363 (378)
107 4gcn_A Protein STI-1; structur 95.0 0.17 5.7E-06 37.4 9.0 59 108-175 9-68 (127)
108 3sf4_A G-protein-signaling mod 94.8 0.16 5.5E-06 43.5 9.8 108 88-200 197-332 (406)
109 2hr2_A Hypothetical protein; a 94.8 0.43 1.5E-05 38.0 11.5 80 88-172 21-125 (159)
110 4gcn_A Protein STI-1; structur 94.8 0.42 1.4E-05 35.2 10.9 46 88-133 18-68 (127)
111 2vgx_A Chaperone SYCD; alterna 94.8 0.64 2.2E-05 35.2 12.2 106 106-220 20-140 (148)
112 1na0_A Designed protein CTPR3; 94.8 0.34 1.2E-05 33.6 9.9 86 107-200 9-102 (125)
113 3rkv_A Putative peptidylprolyl 94.7 0.18 6.3E-06 38.2 8.9 79 87-174 20-122 (162)
114 2xcb_A PCRH, regulatory protei 94.7 0.49 1.7E-05 35.1 11.1 104 107-219 18-136 (142)
115 4gco_A Protein STI-1; structur 94.6 0.3 1E-05 36.1 9.7 83 107-197 13-103 (126)
116 1elw_A TPR1-domain of HOP; HOP 94.6 0.33 1.1E-05 33.4 9.4 87 106-200 3-97 (118)
117 2vyi_A SGTA protein; chaperone 94.5 0.77 2.6E-05 32.0 12.2 86 107-200 12-105 (131)
118 2pzi_A Probable serine/threoni 94.5 0.24 8.4E-06 47.6 11.2 81 87-175 400-493 (681)
119 2pzi_A Probable serine/threoni 94.5 0.14 4.8E-06 49.3 9.5 45 88-132 443-492 (681)
120 2ond_A Cleavage stimulation fa 94.5 0.46 1.6E-05 40.2 11.8 39 95-133 81-125 (308)
121 3q15_A PSP28, response regulat 94.5 0.78 2.7E-05 39.8 13.5 136 89-232 112-288 (378)
122 3sz7_A HSC70 cochaperone (SGT) 94.4 0.33 1.1E-05 36.8 9.7 86 107-200 11-104 (164)
123 3upv_A Heat shock protein STI1 94.4 0.39 1.3E-05 34.5 9.7 85 107-199 4-96 (126)
124 2e2e_A Formate-dependent nitri 94.4 0.29 9.8E-06 37.5 9.5 79 88-174 54-140 (177)
125 2lni_A Stress-induced-phosphop 94.3 0.47 1.6E-05 33.5 9.9 87 106-200 15-109 (133)
126 3qou_A Protein YBBN; thioredox 94.3 1.5 5E-05 36.9 14.4 93 64-175 84-177 (287)
127 2fbn_A 70 kDa peptidylprolyl i 94.3 0.3 1E-05 38.4 9.4 80 87-174 47-147 (198)
128 1elr_A TPR2A-domain of HOP; HO 94.3 0.43 1.5E-05 33.5 9.6 85 107-199 4-103 (131)
129 2xev_A YBGF; tetratricopeptide 94.3 0.92 3.2E-05 32.2 11.5 83 110-200 5-101 (129)
130 3q49_B STIP1 homology and U bo 94.2 0.55 1.9E-05 33.8 10.3 87 105-199 7-101 (137)
131 1qqe_A Vesicular transport pro 94.2 0.46 1.6E-05 40.1 11.2 109 88-201 87-225 (292)
132 3n71_A Histone lysine methyltr 94.2 0.51 1.7E-05 44.0 12.3 83 88-175 319-419 (490)
133 1a17_A Serine/threonine protei 94.2 0.66 2.2E-05 34.3 10.9 118 106-231 12-143 (166)
134 4i17_A Hypothetical protein; T 94.1 0.31 1.1E-05 38.9 9.3 86 88-176 52-144 (228)
135 2ond_A Cleavage stimulation fa 94.0 0.66 2.2E-05 39.2 11.8 133 89-231 110-267 (308)
136 2hr2_A Hypothetical protein; a 94.0 1.5 5.2E-05 34.7 13.0 106 106-232 10-129 (159)
137 1ouv_A Conserved hypothetical 93.9 1.2 4.3E-05 36.3 13.0 132 91-232 91-249 (273)
138 3k9i_A BH0479 protein; putativ 93.8 0.15 5.1E-06 36.7 6.3 77 91-175 3-87 (117)
139 2qfc_A PLCR protein; TPR, HTH, 93.6 2.1 7.1E-05 35.7 14.1 23 109-131 157-179 (293)
140 1hxi_A PEX5, peroxisome target 93.5 0.76 2.6E-05 33.5 9.9 83 109-199 19-109 (121)
141 2ifu_A Gamma-SNAP; membrane fu 93.5 0.44 1.5E-05 40.5 9.7 108 84-200 42-180 (307)
142 1kt0_A FKBP51, 51 kDa FK506-bi 93.3 0.82 2.8E-05 41.6 11.7 101 88-196 278-406 (457)
143 3ro3_A PINS homolog, G-protein 93.2 0.47 1.6E-05 34.3 8.3 82 88-174 59-154 (164)
144 2yhc_A BAMD, UPF0169 lipoprote 93.2 2.7 9.2E-05 33.5 14.5 146 86-231 12-210 (225)
145 3qwp_A SET and MYND domain-con 93.1 0.73 2.5E-05 42.1 11.0 85 85-174 294-396 (429)
146 1p5q_A FKBP52, FK506-binding p 93.0 0.52 1.8E-05 40.9 9.6 80 88-175 157-256 (336)
147 3qky_A Outer membrane assembly 92.9 1.7 5.9E-05 35.2 12.2 113 88-200 62-220 (261)
148 1p5q_A FKBP52, FK506-binding p 92.9 1.2 4.1E-05 38.6 11.7 124 91-222 126-280 (336)
149 2kat_A Uncharacterized protein 92.9 0.97 3.3E-05 31.9 9.4 61 105-173 17-77 (115)
150 4f3v_A ESX-1 secretion system 92.8 1.7 5.9E-05 37.6 12.5 106 88-200 112-233 (282)
151 2dba_A Smooth muscle cell asso 92.5 1.1 3.8E-05 32.2 9.6 90 106-200 27-124 (148)
152 1hz4_A MALT regulatory protein 92.3 3.7 0.00013 35.0 14.1 136 88-231 145-319 (373)
153 4ga2_A E3 SUMO-protein ligase 92.3 0.19 6.5E-06 38.2 5.1 77 88-173 41-123 (150)
154 2c2l_A CHIP, carboxy terminus 92.2 1.7 5.8E-05 36.4 11.6 87 106-200 3-97 (281)
155 1hz4_A MALT regulatory protein 92.2 2.4 8.2E-05 36.2 12.8 105 88-200 24-160 (373)
156 2fbn_A 70 kDa peptidylprolyl i 92.0 1.5 5E-05 34.2 10.3 86 107-200 38-147 (198)
157 2h6f_A Protein farnesyltransfe 92.0 0.68 2.3E-05 41.4 9.2 45 89-133 142-192 (382)
158 3qww_A SET and MYND domain-con 92.0 0.8 2.7E-05 42.0 9.8 79 91-174 311-407 (433)
159 2ifu_A Gamma-SNAP; membrane fu 92.0 0.57 1.9E-05 39.8 8.3 107 88-200 86-220 (307)
160 3urz_A Uncharacterized protein 92.0 0.6 2E-05 37.2 8.0 46 88-133 64-114 (208)
161 1ihg_A Cyclophilin 40; ppiase 91.9 0.49 1.7E-05 42.0 8.0 79 88-174 233-332 (370)
162 3rkv_A Putative peptidylprolyl 91.7 1.4 4.8E-05 33.1 9.6 90 105-199 9-121 (162)
163 2yhc_A BAMD, UPF0169 lipoprote 91.4 2 6.7E-05 34.4 10.6 113 88-200 51-209 (225)
164 2xm6_A Protein corresponding t 91.3 4.8 0.00017 36.1 14.3 41 91-131 56-103 (490)
165 2l6j_A TPR repeat-containing p 91.3 0.82 2.8E-05 31.4 7.3 61 106-174 3-63 (111)
166 4g1t_A Interferon-induced prot 90.8 2.3 7.8E-05 37.4 11.3 44 90-133 225-273 (472)
167 1ihg_A Cyclophilin 40; ppiase 90.7 1.9 6.5E-05 38.1 10.7 93 108-200 224-332 (370)
168 4f3v_A ESX-1 secretion system 90.6 2 6.8E-05 37.2 10.4 82 88-175 145-234 (282)
169 1na3_A Designed protein CTPR2; 90.3 1.5 5.1E-05 28.8 7.6 60 107-174 9-68 (91)
170 2r5s_A Uncharacterized protein 90.1 4.3 0.00015 30.8 11.2 60 109-176 8-67 (176)
171 1kt0_A FKBP51, 51 kDa FK506-bi 90.1 2.4 8.1E-05 38.5 11.0 108 106-221 267-400 (457)
172 2kc7_A BFR218_protein; tetratr 89.5 1 3.5E-05 30.6 6.4 48 86-133 8-61 (99)
173 2qfc_A PLCR protein; TPR, HTH, 89.5 1.6 5.4E-05 36.5 8.7 96 88-194 165-276 (293)
174 3ma5_A Tetratricopeptide repea 89.2 0.89 3.1E-05 31.7 5.9 45 88-132 17-66 (100)
175 2if4_A ATFKBP42; FKBP-like, al 89.2 0.86 2.9E-05 39.6 7.0 80 89-177 190-292 (338)
176 1na3_A Designed protein CTPR2; 88.8 1.4 4.6E-05 29.1 6.5 47 87-133 18-69 (91)
177 2ooe_A Cleavage stimulation fa 88.7 7.6 0.00026 35.2 13.4 43 91-133 292-347 (530)
178 4b4t_Q 26S proteasome regulato 87.9 5.4 0.00019 34.5 11.5 107 88-199 65-199 (434)
179 2l6j_A TPR repeat-containing p 87.9 1.3 4.6E-05 30.2 6.1 47 87-133 13-64 (111)
180 2xm6_A Protein corresponding t 87.8 13 0.00046 33.1 14.3 43 91-133 92-141 (490)
181 3n71_A Histone lysine methyltr 87.4 2.9 9.8E-05 38.9 9.7 83 88-175 361-461 (490)
182 4g26_A Pentatricopeptide repea 87.3 1.9 6.5E-05 40.0 8.5 100 93-201 85-201 (501)
183 2ooe_A Cleavage stimulation fa 86.9 5.6 0.00019 36.1 11.3 131 89-227 332-484 (530)
184 2kat_A Uncharacterized protein 86.8 1.7 5.8E-05 30.5 6.2 46 88-133 29-79 (115)
185 2kck_A TPR repeat; tetratricop 85.9 1.5 5.1E-05 29.6 5.4 47 88-134 50-104 (112)
186 1zu2_A Mitochondrial import re 84.8 1.1 3.7E-05 35.5 4.6 102 91-200 15-136 (158)
187 3qwp_A SET and MYND domain-con 84.7 22 0.00077 32.0 16.2 48 153-200 333-396 (429)
188 3u3w_A Transcriptional activat 84.2 16 0.00056 30.0 12.1 80 88-172 165-260 (293)
189 1wao_1 Serine/threonine protei 84.0 1.5 5.3E-05 40.1 6.0 78 88-173 50-134 (477)
190 3k9i_A BH0479 protein; putativ 83.5 3 0.0001 29.5 6.2 46 88-133 37-87 (117)
191 3qww_A SET and MYND domain-con 83.2 3.7 0.00013 37.5 8.1 34 20-68 192-226 (433)
192 4g1t_A Interferon-induced prot 83.1 6 0.00021 34.6 9.4 45 89-133 62-120 (472)
193 4g26_A Pentatricopeptide repea 83.1 5.4 0.00018 36.9 9.3 86 81-175 108-201 (501)
194 3rjv_A Putative SEL1 repeat pr 82.1 15 0.00052 28.9 10.7 134 88-232 28-195 (212)
195 2hbp_A Cytoskeleton assembly c 81.7 2.3 7.8E-05 28.9 4.5 41 49-89 14-54 (68)
196 4b4t_Q 26S proteasome regulato 80.4 7.7 0.00026 33.5 8.9 107 86-200 12-160 (434)
197 2kc7_A BFR218_protein; tetratr 79.4 5 0.00017 26.9 6.0 54 112-174 5-60 (99)
198 3rjv_A Putative SEL1 repeat pr 76.4 8.4 0.00029 30.4 7.4 119 103-232 14-156 (212)
199 3mv2_B Coatomer subunit epsilo 75.2 23 0.0008 30.8 10.4 81 153-233 104-206 (310)
200 2pm7_A Protein WEB1, protein t 74.8 5.1 0.00017 36.4 6.1 48 169-219 150-199 (399)
201 3ly7_A Transcriptional activat 74.1 48 0.0016 29.7 12.3 54 153-216 314-369 (372)
202 3mzk_B Protein transport prote 73.9 4.2 0.00014 37.5 5.4 48 167-217 155-203 (441)
203 2wpv_A GET4, UPF0363 protein Y 73.8 14 0.00047 32.4 8.5 103 84-186 39-173 (312)
204 3ffl_A Anaphase-promoting comp 71.1 27 0.00091 27.8 8.9 53 80-132 22-88 (167)
205 2if4_A ATFKBP42; FKBP-like, al 70.9 5.8 0.0002 34.2 5.4 48 88-135 240-292 (338)
206 2pm7_A Protein WEB1, protein t 65.0 25 0.00087 31.7 8.5 50 90-139 225-280 (399)
207 2qx5_A Nucleoporin NIC96; mRNA 58.3 65 0.0022 31.1 10.5 101 81-187 356-481 (661)
208 3lpz_A GET4 (YOR164C homolog); 55.3 59 0.002 28.7 9.0 25 153-177 140-164 (336)
209 1gxr_A ESG1, transducin-like e 52.7 58 0.002 26.2 8.2 28 2-29 54-81 (337)
210 4b4t_P 26S proteasome regulato 52.4 58 0.002 29.4 8.8 81 88-175 147-244 (445)
211 1z2z_A Probable tRNA pseudouri 50.4 22 0.00076 32.5 5.6 41 158-198 187-233 (446)
212 3f3f_A Nucleoporin SEH1; struc 47.4 93 0.0032 24.7 8.6 28 2-29 14-42 (351)
213 4b4t_R RPN7, 26S proteasome re 46.3 36 0.0012 30.5 6.3 80 88-175 141-234 (429)
214 4aez_A CDC20, WD repeat-contai 46.3 85 0.0029 26.7 8.6 27 2-28 137-164 (401)
215 3jrp_A Fusion protein of prote 45.4 87 0.003 25.6 8.3 27 2-28 14-41 (379)
216 3ax2_A Mitochondrial import re 43.6 43 0.0015 22.8 4.8 36 152-187 20-59 (73)
217 4aow_A Guanine nucleotide-bind 43.3 1.1E+02 0.0037 24.6 8.5 28 2-29 41-70 (340)
218 1klx_A Cysteine rich protein B 43.0 92 0.0031 22.5 8.3 51 113-175 31-87 (138)
219 3lvg_A Clathrin heavy chain 1; 42.0 8.1 0.00028 36.7 1.2 95 106-211 409-505 (624)
220 3f3f_C Nucleoporin NUP85; stru 41.7 6.5 0.00022 37.4 0.5 49 92-140 517-569 (570)
221 3lvg_A Clathrin heavy chain 1; 38.4 2 6.9E-05 40.7 -3.5 45 88-132 180-224 (624)
222 1k8k_C P40, ARP2/3 complex 41 37.3 1.1E+02 0.0037 25.1 7.6 27 2-28 11-38 (372)
223 3zwl_B Eukaryotic translation 35.6 1.6E+02 0.0055 23.7 8.4 28 2-29 35-63 (369)
224 2qx5_A Nucleoporin NIC96; mRNA 35.0 51 0.0017 31.8 5.6 35 166-200 447-481 (661)
225 4gqb_B Methylosome protein 50; 34.7 25 0.00086 30.0 3.2 26 2-27 85-110 (344)
226 2ojh_A Uncharacterized protein 34.6 36 0.0012 26.7 3.9 27 2-28 44-70 (297)
227 1yfq_A Cell cycle arrest prote 34.3 1.1E+02 0.0038 24.6 7.2 26 2-27 59-86 (342)
228 3dw8_B Serine/threonine-protei 34.3 32 0.0011 29.5 3.8 27 2-28 180-206 (447)
229 3odt_A Protein DOA1; ubiquitin 33.8 1.1E+02 0.0038 24.2 6.9 28 2-29 62-90 (313)
230 3txn_A 26S proteasome regulato 33.6 2.3E+02 0.0079 25.2 9.5 79 88-175 109-207 (394)
231 4g56_B MGC81050 protein; prote 33.2 21 0.00072 30.5 2.4 25 2-26 97-121 (357)
232 3lrv_A PRE-mRNA-splicing facto 32.4 36 0.0012 28.4 3.7 28 2-29 217-244 (343)
233 4gga_A P55CDC, cell division c 31.7 58 0.002 28.0 5.1 28 2-29 150-178 (420)
234 2ff4_A Probable regulatory pro 31.6 1.1E+02 0.0039 26.7 7.1 47 88-134 181-232 (388)
235 3bee_A Putative YFRE protein; 31.0 1.1E+02 0.0038 20.9 5.6 41 94-134 25-70 (93)
236 3jrp_A Fusion protein of prote 30.8 2E+02 0.0069 23.2 8.2 28 2-29 209-240 (379)
237 4aez_A CDC20, WD repeat-contai 30.6 1.3E+02 0.0046 25.4 7.3 28 2-29 306-336 (401)
238 1om2_A Protein (mitochondrial 30.0 98 0.0033 22.1 5.1 37 152-188 23-63 (95)
239 1klx_A Cysteine rich protein B 29.9 1.5E+02 0.0052 21.2 8.1 74 92-175 39-123 (138)
240 2kmu_A ATP-dependent DNA helic 29.3 70 0.0024 20.6 3.8 25 176-202 1-25 (56)
241 3i2n_A WD repeat-containing pr 28.7 41 0.0014 27.5 3.4 28 2-29 21-53 (357)
242 1vdl_A Ubiquitin carboxyl-term 28.4 1.4E+02 0.0048 20.4 5.4 38 138-175 27-64 (80)
243 3v7d_B Cell division control p 28.1 1.3E+02 0.0043 25.9 6.7 58 2-69 394-451 (464)
244 2oit_A Nucleoporin 214KDA; NH2 27.9 1.6E+02 0.0056 25.8 7.5 26 2-27 152-179 (434)
245 4h5i_A Guanine nucleotide-exch 27.3 55 0.0019 27.9 4.1 29 2-30 179-207 (365)
246 2vdu_B TRNA (guanine-N(7)-)-me 27.3 51 0.0017 28.7 3.9 26 2-27 7-32 (450)
247 3vu4_A KMHSV2; beta-propeller 27.2 50 0.0017 27.9 3.8 26 2-27 22-47 (355)
248 2xzm_R RACK1; ribosome, transl 26.9 2E+02 0.007 23.6 7.6 28 2-29 258-285 (343)
249 4e6h_A MRNA 3'-END-processing 26.3 4.3E+02 0.015 25.1 10.6 22 106-127 342-363 (679)
250 3odt_A Protein DOA1; ubiquitin 25.9 52 0.0018 26.2 3.5 26 2-27 228-253 (313)
251 2v5f_A Prolyl 4-hydroxylase su 25.8 1.6E+02 0.0054 20.0 7.3 25 108-132 6-30 (104)
252 3scy_A Hypothetical bacterial 25.5 2.8E+02 0.0095 22.7 8.9 28 2-29 52-84 (361)
253 3mmy_A MRNA export factor; mRN 24.5 2.1E+02 0.0071 23.0 7.1 28 2-29 89-117 (368)
254 3iko_C Nucleoporin NUP84; NPC, 24.5 62 0.0021 29.7 4.0 30 171-200 186-215 (460)
255 4aow_A Guanine nucleotide-bind 24.3 1.5E+02 0.0051 23.7 6.2 28 2-29 259-286 (340)
256 3qil_A Clathrin heavy chain 1; 24.2 1.5 5E-05 33.4 -5.8 39 172-210 16-56 (125)
257 2pm9_A Protein WEB1, protein t 24.0 2.1E+02 0.0072 23.7 7.2 28 2-29 70-98 (416)
258 1wmg_A Netrin receptor UNC5H2; 23.6 1.3E+02 0.0044 21.4 4.9 18 98-115 18-39 (103)
259 2d2s_A Exocyst complex compone 23.3 2.9E+02 0.01 22.6 7.7 25 81-105 21-45 (235)
260 3bee_A Putative YFRE protein; 23.1 1.8E+02 0.0062 19.7 7.8 57 105-173 4-67 (93)
261 2j04_A TAU60, YPL007P, hypothe 23.0 4.4E+02 0.015 24.9 9.7 27 2-28 132-159 (588)
262 4ggc_A P55CDC, cell division c 22.3 75 0.0025 25.4 3.8 23 2-25 28-50 (318)
263 3dw8_B Serine/threonine-protei 22.3 71 0.0024 27.2 3.8 27 2-28 288-314 (447)
264 4g56_B MGC81050 protein; prote 22.3 2E+02 0.0069 24.0 6.8 27 2-28 45-78 (357)
265 3ffl_A Anaphase-promoting comp 22.0 2.5E+02 0.0085 22.1 6.6 50 153-202 67-149 (167)
266 2nsz_A Programmed cell death p 22.0 93 0.0032 23.0 4.0 30 82-111 11-40 (129)
267 4e54_B DNA damage-binding prot 22.0 59 0.002 28.2 3.3 25 2-26 122-148 (435)
268 2hes_X YDR267CP; beta-propelle 21.4 73 0.0025 26.4 3.7 26 2-27 61-87 (330)
269 2vxg_A LD41624, GE-1, CG6181-P 21.4 1.4E+02 0.0049 22.6 5.0 35 158-193 9-43 (139)
270 2hes_X YDR267CP; beta-propelle 21.4 3.3E+02 0.011 22.1 8.6 26 2-27 110-136 (330)
271 4gns_B Protein CSD3, chitin bi 20.9 1.2E+02 0.0043 29.6 5.6 45 89-133 348-397 (754)
272 3e4b_A ALGK; tetratricopeptide 20.7 4.2E+02 0.014 23.1 13.9 13 162-174 264-276 (452)
273 1zu2_A Mitochondrial import re 20.7 64 0.0022 25.1 2.9 39 94-132 62-116 (158)
274 4a11_B DNA excision repair pro 20.4 76 0.0026 26.3 3.5 28 2-29 337-365 (408)
275 3iz6_a 40S ribosomal protein R 20.4 77 0.0026 26.9 3.6 26 2-27 69-95 (380)
276 1gxr_A ESG1, transducin-like e 20.2 3.2E+02 0.011 21.5 8.2 28 2-29 227-255 (337)
277 1k8k_C P40, ARP2/3 complex 41 20.0 45 0.0015 27.5 2.0 28 2-29 247-274 (372)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.90 E-value=9e-22 Score=191.02 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=127.8
Q ss_pred HHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHH
Q psy11525 89 AASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEA 168 (244)
Q Consensus 89 l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eA 168 (244)
++.|+|++|+++|+.++++.+|+.||++|++.+++++|++||.+++|++++.+|..+....++..++|+++...|+++.|
T Consensus 663 l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A 742 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLA 742 (814)
T ss_dssp HHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHH
Confidence 78899999999999999999999999999999999999999999999999999999988777788999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcC-Cc--hhHHHHHHHHHHHHcCCc
Q psy11525 169 ESILLQHGLIFRAIQVSILTHNWDRALELALRHK-TH--IDTVLYQRKKYLDNLEKI 222 (244)
Q Consensus 169 e~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~-~~--~~~vl~~r~~yl~~~~~~ 222 (244)
+.+|+++|++++|++||+++++|++|+.||++|+ .+ ++.++..++.+|+..|+.
T Consensus 743 ~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~ 799 (814)
T 3mkq_A 743 FNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKN 799 (814)
T ss_dssp HHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999999999999 45 779999999999999874
No 2
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.1e-20 Score=154.31 Aligned_cols=132 Identities=15% Similarity=0.132 Sum_probs=124.1
Q ss_pred HHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHH
Q psy11525 89 AASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEA 168 (244)
Q Consensus 89 l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eA 168 (244)
|+.|+++.|+++|+.++++..|++||..||..+++++|++||.++||++++.+|..+....++...+|.++...|++.-|
T Consensus 16 L~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~a 95 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSM 95 (177)
T ss_dssp HHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHcCCcccH
Q psy11525 169 ESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETN 225 (244)
Q Consensus 169 e~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~~~~~vl~~r~~yl~~~~~~e~~ 225 (244)
+..++..|+++++++|+++.++|++|..+|++|++. + ..++++++.|..|..
T Consensus 96 f~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~--~---~a~~~~~~~~~~~~~ 147 (177)
T 3mkq_B 96 LLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDE--A---AASAFLEQAEVDEQD 147 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCH--H---HHHHHHHHTTCCGGG
T ss_pred HHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcH--H---HHHHHHHHhCCcccc
Confidence 999999999999999999999999999999999974 4 556777788776543
No 3
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.44 E-value=2.4e-05 Score=75.37 Aligned_cols=140 Identities=11% Similarity=0.026 Sum_probs=95.3
Q ss_pred CeEEe--EeCCEEEEEecCCcEEEeecCccHHHHHHH---HHcCCHHHHHH-HHhccC-CHHHHHHHHHHHHHcCCHHHH
Q psy11525 54 PSIVS--FVKNHLTIRRYDGTVINYPISPYISVLHSY---AASHSWPQALS-LCRTLN-DDILWACLAGMATYSRDLATS 126 (244)
Q Consensus 54 ~~~v~--f~g~~v~~~~~~G~~~~~~~~p~~~~l~~~---l~~~~~~~A~~-~~~~~~-~~~lW~~LA~~Al~~~~l~~A 126 (244)
+.+++ ..|+.+.|...+|.+....+ +..++.| +..++|++|.+ +...+. ...+ ..++....+.+..+.|
T Consensus 573 ~~~~~~~~~~~~l~~~d~~~~~~~~~l---~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~-~~~~~~l~~~~~~~~a 648 (814)
T 3mkq_A 573 MYLLGYLARDNKVYLADREVHVYGYEI---SLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSL-TKIARFLEGQEYYEEA 648 (814)
T ss_dssp CEEEEEEGGGTEEEEECTTCCEEEEEC---CHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHH-HHHHHHHHHTTCHHHH
T ss_pred EEEEEEEecCCEEEEEcCCCCEEEEEE---CcHHHHHhHHHHhCCHHHHHHHHHhcCCchHHH-HHHHHHHHhCCChHHh
Confidence 34444 46777777777776654333 2233333 88999999998 776666 5544 6666666666666555
Q ss_pred HH----------HHHHhCChhHHHHHHHhhCCCcH--HHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHH
Q psy11525 127 EE----------AYAAIEQVDKVMYINHIKGIPVK--AAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRA 194 (244)
Q Consensus 127 ~~----------~y~~l~d~~~v~~l~~i~~~~~~--~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~A 194 (244)
.. ....+|+++.+.-+ ++.+.++ -..+|+.|+..|+++.|++.|.++|+++.+..+|..+++.+..
T Consensus 649 ~~~~~~~~~~f~~~l~~~~~~~A~~~--~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 649 LNISPDQDQKFELALKVGQLTLARDL--LTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHCCCHHHHHHHHHHHTCHHHHHHH--HTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH
T ss_pred eecCCCcchheehhhhcCCHHHHHHH--HHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHH
Confidence 32 22455555544333 3344443 3789999999999999999999999999999999999988865
Q ss_pred HHHHH
Q psy11525 195 LELAL 199 (244)
Q Consensus 195 l~LA~ 199 (244)
.++|+
T Consensus 727 ~~~~~ 731 (814)
T 3mkq_A 727 VTLAK 731 (814)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 4
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.41 E-value=4.3e-07 Score=84.66 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=56.4
Q ss_pred HcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHH-----------------HHHhhCCC---
Q psy11525 90 ASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMY-----------------INHIKGIP--- 149 (244)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~-----------------l~~i~~~~--- 149 (244)
..|++++|++++...+++..|..||..+++.++++.|+.||.+.+|+..... ++...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~ 94 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 94 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccc
Confidence 4677999999999999999999999999999999999999999888653311 11111100
Q ss_pred --c----------------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525 150 --V----------------------------------------------------KAAQQAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 150 --~----------------------------------------------------~~~~~A~ia~~~G~~~eAe~~~l~~ 175 (244)
+ ...++|.++..+|+|++|.+.|.++
T Consensus 95 ~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 95 YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp --------------CHHHHTTTTTCC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 0 0123788999999999999999999
Q ss_pred CCH---HHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHcCC-cccHHHHHhc
Q psy11525 176 GLI---FRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEK-IETNEKFLRL 231 (244)
Q Consensus 176 g~~---~~Ai~m~~~l~~W~~Al~LA~~~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~ 231 (244)
+.+ ..++..|.++++|++|...+.....+-+..... -.+++..|. +|.+..|+++
T Consensus 175 ~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~l-v~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 175 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEEL-INYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHH-HHHHHHTTCHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHH-HHHHHHCCCHHHHHHHHHHH
Confidence 999 888999999999999977666544443442221 234456665 4555666655
No 5
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.15 E-value=6.1e-05 Score=78.66 Aligned_cols=120 Identities=12% Similarity=0.110 Sum_probs=98.8
Q ss_pred HHHHHHH-HcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhH-----------------HHHHHH
Q psy11525 83 SVLHSYA-ASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDK-----------------VMYINH 144 (244)
Q Consensus 83 ~~l~~~l-~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~-----------------v~~l~~ 144 (244)
.++..++ ..++|++|.+++...+.+..|.++|..-+..++++.|..||.+-+|.+. +++++.
T Consensus 1080 ~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1080 SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344445 8899999999999999999999999999999999999999999888654 344433
Q ss_pred hhCCC-----------------c--------------HHHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHH
Q psy11525 145 IKGIP-----------------V--------------KAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDR 193 (244)
Q Consensus 145 i~~~~-----------------~--------------~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~ 193 (244)
.++.. . .....|..+...|+|++|-.+|.+++.+.++...+..++++++
T Consensus 1160 Ark~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~ 1239 (1630)
T 1xi4_A 1160 ARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 1239 (1630)
T ss_pred HHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHH
Confidence 22211 0 1134788888999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q psy11525 194 ALELALRHK 202 (244)
Q Consensus 194 Al~LA~~~~ 202 (244)
|++.|++-+
T Consensus 1240 AIEaarKA~ 1248 (1630)
T 1xi4_A 1240 AVDGARKAN 1248 (1630)
T ss_pred HHHHHHHhC
Confidence 999997754
No 6
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.92 E-value=0.0002 Score=74.84 Aligned_cols=134 Identities=22% Similarity=0.178 Sum_probs=97.3
Q ss_pred cHHHHHHHHHcCCHHHHHHHHhccCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHH-HHHHHhhCCCcH
Q psy11525 81 YISVLHSYAASHSWPQALSLCRTLNDD--------ILWACLAGMATYSRDLATSEEAYAAIEQVDKV-MYINHIKGIPVK 151 (244)
Q Consensus 81 ~~~~l~~~l~~~~~~~A~~~~~~~~~~--------~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v-~~l~~i~~~~~~ 151 (244)
.+.....|+..|...+|..+.+.+..+ .+=..|+..|++. |.+++ .++.++.+..
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--------------D~~Rv~eyI~kLd~~d-- 1051 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--------------DRTRVMEYINRLDNYD-- 1051 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--------------ChhhHHHHHHHhhhcc--
Confidence 356777889999999999999886321 1111133333322 44443 4455544322
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHH-HhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHcCC-cccHHHHH
Q psy11525 152 AAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSI-LTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEK-IETNEKFL 229 (244)
Q Consensus 152 ~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~-~l~~W~~Al~LA~~~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~ 229 (244)
....|.++...|+|+||..+|.+++....|++.+. .+++|++|+++|++-+. ..+.....+.+++.|+ .|++..|.
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 23489999999999999999999999999977776 99999999999997654 4667777777777666 78888888
Q ss_pred hcc
Q psy11525 230 RLQ 232 (244)
Q Consensus 230 ~~~ 232 (244)
+++
T Consensus 1130 KAd 1132 (1630)
T 1xi4_A 1130 KAD 1132 (1630)
T ss_pred hcC
Confidence 874
No 7
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.68 E-value=0.0019 Score=50.36 Aligned_cols=137 Identities=9% Similarity=-0.121 Sum_probs=94.9
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG 162 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~ 162 (244)
|...|+|++|.+..+.. .....|..+|......++++.|...|...- ..-..........|.+....
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 86 (184)
T 3vtx_A 15 KRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFV--------VLDTTSAEAYYILGSANFMI 86 (184)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------hcCchhHHHHHHHHHHHHHc
Confidence 57899999999988774 567889999999999999998888776531 11111122335678888899
Q ss_pred CCHHHHHHHHHHCCC-----HH---HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHh
Q psy11525 163 GNISEAESILLQHGL-----IF---RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLR 230 (244)
Q Consensus 163 G~~~eAe~~~l~~g~-----~~---~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~ 230 (244)
|++++|...|.++-. ++ .--.+|..+++|++|++..++ .+|....+......-+...|+ .++.+.|++
T Consensus 87 ~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 87 DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999988876422 11 223567888999999876554 455544555555566666666 677777777
Q ss_pred cc
Q psy11525 231 LQ 232 (244)
Q Consensus 231 ~~ 232 (244)
+-
T Consensus 167 al 168 (184)
T 3vtx_A 167 AL 168 (184)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 8
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00034 Score=57.32 Aligned_cols=90 Identities=12% Similarity=0.052 Sum_probs=81.1
Q ss_pred HHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHH
Q psy11525 118 TYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALEL 197 (244)
Q Consensus 118 l~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~L 197 (244)
-+.+|++-..-.|.-.||.+++..+.++.....+....-..++++|+++++.++|.++|++.+|.-+-+.-+.-+.|-++
T Consensus 58 ~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~~a~~~ 137 (177)
T 3mkq_B 58 QTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAASAF 137 (177)
T ss_dssp HHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHHHHHHH
Confidence 35678999999999999999999999998887777777889999999999999999999999999999999999999999
Q ss_pred HHhcCCchhH
Q psy11525 198 ALRHKTHIDT 207 (244)
Q Consensus 198 A~~~~~~~~~ 207 (244)
.++.+...++
T Consensus 138 ~~~~~~~~~~ 147 (177)
T 3mkq_B 138 LEQAEVDEQD 147 (177)
T ss_dssp HHHTTCCGGG
T ss_pred HHHhCCcccc
Confidence 9988865444
No 9
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.52 E-value=0.0013 Score=53.74 Aligned_cols=143 Identities=16% Similarity=0.042 Sum_probs=75.8
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh-----------------------------
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI----------------------------- 133 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l----------------------------- 133 (244)
++..|++++|....+.. .....|..+|......++++.|+.+|.+.
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~ 94 (217)
T 2pl2_A 15 LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRE 94 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhc
Confidence 46778888887776653 45677777888888888887777776643
Q ss_pred ---CChhHH-HHHHHhhCC-Cc---HHHHHHHHHHHcCCHHHHHHHHHHC----CCHHH---HHHHHHHhcCHHHHHHHH
Q psy11525 134 ---EQVDKV-MYINHIKGI-PV---KAAQQAEMYLLGGNISEAESILLQH----GLIFR---AIQVSILTHNWDRALELA 198 (244)
Q Consensus 134 ---~d~~~v-~~l~~i~~~-~~---~~~~~A~ia~~~G~~~eAe~~~l~~----g~~~~---Ai~m~~~l~~W~~Al~LA 198 (244)
|++... ..++++..+ ++ .....|.++...|++++|...|.++ +.+.. --.+|..+|++++|+...
T Consensus 95 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 95 RGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 111111 111222111 11 1245677888888888888887664 22221 234567778888877655
Q ss_pred Hh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHh
Q psy11525 199 LR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLR 230 (244)
Q Consensus 199 ~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~ 230 (244)
++ .+|.-..+.......+...|+ .++.+.|++
T Consensus 175 ~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 175 AKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44 344433444444455544444 344554444
No 10
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.50 E-value=0.0068 Score=49.24 Aligned_cols=144 Identities=12% Similarity=0.010 Sum_probs=82.7
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC---------------------ChhHH-H
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE---------------------QVDKV-M 140 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~---------------------d~~~v-~ 140 (244)
+...|++++|....+.. .....|..+|......++++.|..+|.+.- ++... .
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 126 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQ 126 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHH
Confidence 35566666666655442 245556666666666666666655554321 11111 2
Q ss_pred HHHHhhC--C-Cc---HHHHHHHHHHHcCCHHHHHHHHHHCC-----C---HHHHHHHHHHhcCHHHHHHHHHhc---CC
Q psy11525 141 YINHIKG--I-PV---KAAQQAEMYLLGGNISEAESILLQHG-----L---IFRAIQVSILTHNWDRALELALRH---KT 203 (244)
Q Consensus 141 ~l~~i~~--~-~~---~~~~~A~ia~~~G~~~eAe~~~l~~g-----~---~~~Ai~m~~~l~~W~~Al~LA~~~---~~ 203 (244)
.++++.. . +. .....|.++...|++++|.+.|.++- . ......++..++++++|++..++. .+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 206 (252)
T 2ho1_A 127 RLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG 206 (252)
T ss_dssp HHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 2233322 1 11 12457889999999999999998741 1 223356788999999998877652 33
Q ss_pred chhHHHHHHHHHHHHcCCcc-cHHHHHhc
Q psy11525 204 HIDTVLYQRKKYLDNLEKIE-TNEKFLRL 231 (244)
Q Consensus 204 ~~~~vl~~r~~yl~~~~~~e-~~~~f~~~ 231 (244)
.....+......+...|+.+ +...|+++
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 207 QNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 33445555566666666654 44444444
No 11
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00093 Score=54.10 Aligned_cols=86 Identities=8% Similarity=0.027 Sum_probs=63.6
Q ss_pred HHHHcCCHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC----CcHHHHHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI----PVKAAQQAEM 158 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~----~~~~~~~A~i 158 (244)
.+...|+|++|....... .....|..+|......++++.|..+|.+.-.. -...... .......|.+
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~l~~~ 88 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQ-----GREMRADYKVISKSFARIGNA 88 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CcccccchHHHHHHHHHHHHH
Confidence 358899999999987664 56789999999999999999999999873221 1111000 1223568889
Q ss_pred HHHcCCHHHHHHHHHHCCC
Q psy11525 159 YLLGGNISEAESILLQHGL 177 (244)
Q Consensus 159 a~~~G~~~eAe~~~l~~g~ 177 (244)
+...|++++|...|.++-.
T Consensus 89 ~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 89 YHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHh
Confidence 9999999999999877644
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.43 E-value=0.0074 Score=53.36 Aligned_cols=138 Identities=11% Similarity=0.007 Sum_probs=86.3
Q ss_pred HHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHH
Q psy11525 86 HSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYL 160 (244)
Q Consensus 86 ~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~ 160 (244)
..+...|++++|..+.+.. .....|..+|......++++.|..+|.+.-... ..........|.++.
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--------MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHH
Confidence 3468999999999988764 468899999999999999999999887642110 011112245677777
Q ss_pred HcCCHHHHHHHHHHCCC--H------HHH---------------HHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHH
Q psy11525 161 LGGNISEAESILLQHGL--I------FRA---------------IQVSILTHNWDRALELALR---HKTHIDTVLYQRKK 214 (244)
Q Consensus 161 ~~G~~~eAe~~~l~~g~--~------~~A---------------i~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~ 214 (244)
..|++++|.+.|.++-. + ..- -..+...++|++|++..++ ..+....+......
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 185 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 78888888877766521 1 111 1236677777777766654 22322233333444
Q ss_pred HHHHcCC-cccHHHHHhc
Q psy11525 215 YLDNLEK-IETNEKFLRL 231 (244)
Q Consensus 215 yl~~~~~-~e~~~~f~~~ 231 (244)
.+...|+ .++.+.|.++
T Consensus 186 ~~~~~g~~~~A~~~~~~~ 203 (450)
T 2y4t_A 186 CFIKEGEPRKAISDLKAA 203 (450)
T ss_dssp HHHHTTCGGGGHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 4444443 5666666655
No 13
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.39 E-value=0.0082 Score=49.07 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=61.2
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG 162 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~ 162 (244)
+...|++++|....+.. .....|..+|......++++.|..+|.+.-. .-..........|.++...
T Consensus 53 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~la~~~~~~ 124 (275)
T 1xnf_A 53 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--------LDPTYNYAHLNRGIALYYG 124 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCTHHHHHHHHHHHHT
T ss_pred HHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh--------cCccccHHHHHHHHHHHHh
Confidence 48899999999988774 4688999999999999999999999876321 1111223345678888888
Q ss_pred CCHHHHHHHHHHC
Q psy11525 163 GNISEAESILLQH 175 (244)
Q Consensus 163 G~~~eAe~~~l~~ 175 (244)
|++++|...|.++
T Consensus 125 g~~~~A~~~~~~a 137 (275)
T 1xnf_A 125 GRDKLAQDDLLAF 137 (275)
T ss_dssp TCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 9998888888665
No 14
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.39 E-value=0.0027 Score=58.55 Aligned_cols=146 Identities=8% Similarity=-0.062 Sum_probs=92.1
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC---------------------ChhHH-
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE---------------------QVDKV- 139 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~---------------------d~~~v- 139 (244)
-|...|++++|.++.+.+ .....|..++....+.++++.|...|.++- +++..
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 357888888888877754 356788888888888888888888776531 11111
Q ss_pred HHHHHhhCC--Cc--HHHHHHHHHHHcCCHHHHHHHHHHCC--------CH-------HHHHHHHHHhcCHHHHHHHHHh
Q psy11525 140 MYINHIKGI--PV--KAAQQAEMYLLGGNISEAESILLQHG--------LI-------FRAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 140 ~~l~~i~~~--~~--~~~~~A~ia~~~G~~~eAe~~~l~~g--------~~-------~~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
..++++... .+ ....+|.++...|++++|.++|.++- .+ .....+|...|++++|++..++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 122222211 11 12457888888999999999888751 22 2236778888999999887765
Q ss_pred ---cCCchhHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525 201 ---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRLQ 232 (244)
Q Consensus 201 ---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~ 232 (244)
.++.-..+.......+...|+ .++.+.|+++.
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344333444444444555555 56666676653
No 15
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.36 E-value=0.01 Score=46.65 Aligned_cols=80 Identities=11% Similarity=-0.043 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHCC-----CH---HHHHHHHHHhcCHHHHHHHHHhc---CC-chhHHHHHHHHHHHHcC
Q psy11525 153 AQQAEMYLLGGNISEAESILLQHG-----LI---FRAIQVSILTHNWDRALELALRH---KT-HIDTVLYQRKKYLDNLE 220 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eAe~~~l~~g-----~~---~~Ai~m~~~l~~W~~Al~LA~~~---~~-~~~~vl~~r~~yl~~~~ 220 (244)
...|.++...|++++|...|.++- .+ .....++..++++++|++..++. .+ .....+.....++...|
T Consensus 117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 456777778888888888776541 11 12245677788888887766542 23 33344455555666677
Q ss_pred CcccHHHHHhcc
Q psy11525 221 KIETNEKFLRLQ 232 (244)
Q Consensus 221 ~~e~~~~f~~~~ 232 (244)
..+....|.+..
T Consensus 197 ~~~~a~~~~~~~ 208 (225)
T 2vq2_A 197 NAQAAYEYEAQL 208 (225)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 766666665553
No 16
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0058 Score=49.29 Aligned_cols=146 Identities=8% Similarity=-0.023 Sum_probs=100.9
Q ss_pred HHHHcCCHHHHHHHHhccC-----C-------HHHHHHHHHHHHHcCCHHHHHHHHHHhCChh--------------HHH
Q psy11525 87 SYAASHSWPQALSLCRTLN-----D-------DILWACLAGMATYSRDLATSEEAYAAIEQVD--------------KVM 140 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~~-----~-------~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~--------------~v~ 140 (244)
-+...|++++|.+.++... . ...|..+|......++++.|..+|.+.-... .+.
T Consensus 47 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 47 AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELK 126 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHH
Confidence 3588999999999887741 1 5889999999999999999999988654311 112
Q ss_pred HHHHhhCCCcH----HHHHHHHHHHcCCHHHHHHHHHHCC-----C---HHHHHHHHHHhcCHHHHHHHHHh---cCCch
Q psy11525 141 YINHIKGIPVK----AAQQAEMYLLGGNISEAESILLQHG-----L---IFRAIQVSILTHNWDRALELALR---HKTHI 205 (244)
Q Consensus 141 ~l~~i~~~~~~----~~~~A~ia~~~G~~~eAe~~~l~~g-----~---~~~Ai~m~~~l~~W~~Al~LA~~---~~~~~ 205 (244)
.++++...... ....|.++...|++++|...|.++- . ....-..+..+++|++|++..++ .++..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 127 KAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 23333333222 2468999999999999999998751 1 12235678899999999887655 34443
Q ss_pred hHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525 206 DTVLYQRKKYLDNLEK-IETNEKFLRLQ 232 (244)
Q Consensus 206 ~~vl~~r~~yl~~~~~-~e~~~~f~~~~ 232 (244)
...+......+...|+ .++.+.|+++.
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4455555555656666 56666666653
No 17
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.35 E-value=0.0082 Score=48.73 Aligned_cols=79 Identities=14% Similarity=0.027 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHCCC----HHH------HHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHc
Q psy11525 153 AQQAEMYLLGGNISEAESILLQHGL----IFR------AIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNL 219 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eAe~~~l~~g~----~~~------Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~ 219 (244)
...|.++...|++++|.+.|.++-. +.. .-.++...+++++|++..++ ..+.....+......+...
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence 3467788888888888888877633 221 23466778888888776654 2333233334444444444
Q ss_pred CC-cccHHHHHhc
Q psy11525 220 EK-IETNEKFLRL 231 (244)
Q Consensus 220 ~~-~e~~~~f~~~ 231 (244)
|+ .++...|.++
T Consensus 189 g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 189 REYVPARQYYDLF 201 (252)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 54 4555556554
No 18
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.32 E-value=0.011 Score=46.57 Aligned_cols=134 Identities=9% Similarity=0.049 Sum_probs=75.1
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChh--HHHHHHHhhCCCcHHHHHHHHHH
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVD--KVMYINHIKGIPVKAAQQAEMYL 160 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~--~v~~l~~i~~~~~~~~~~A~ia~ 160 (244)
+...|++++|.+..+.. .....|..+|......++++.|..+|.+.-... ... .....|.++.
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------~~~~l~~~~~ 87 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE----------INNNYGWFLC 87 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----------HHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH----------HHHHHHHHHH
Confidence 46777777777766653 346677777777777788777777776542211 111 1234566677
Q ss_pred Hc-CCHHHHHHHHHH-----CCC-----HHHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccH
Q psy11525 161 LG-GNISEAESILLQ-----HGL-----IFRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETN 225 (244)
Q Consensus 161 ~~-G~~~eAe~~~l~-----~g~-----~~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~ 225 (244)
.. |++++|...|.+ ... ....-..+...+++++|++..++ ..+.....+......+...|+ .++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 77 777777776643 221 12223456677777777665543 223222333333333333443 4555
Q ss_pred HHHHhc
Q psy11525 226 EKFLRL 231 (244)
Q Consensus 226 ~~f~~~ 231 (244)
+.|+++
T Consensus 168 ~~~~~~ 173 (225)
T 2vq2_A 168 YYFKKY 173 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 19
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.30 E-value=0.004 Score=53.23 Aligned_cols=83 Identities=13% Similarity=0.087 Sum_probs=58.1
Q ss_pred CCCeEEeEeCCEEEEEecCCcEEEee-------cCcc-HHHH----HHHHHcCCHHHHHHHHhcc-----CCHHHHHHHH
Q psy11525 52 KSPSIVSFVKNHLTIRRYDGTVINYP-------ISPY-ISVL----HSYAASHSWPQALSLCRTL-----NDDILWACLA 114 (244)
Q Consensus 52 ~~~~~v~f~g~~v~~~~~~G~~~~~~-------~~p~-~~~l----~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA 114 (244)
..|+++.|.+|++.-+-. |...... ..|- .+.+ ..++..|++++|....+.. .+...|..||
T Consensus 80 ~~Pt~~~~~~G~~~~~~~-g~~~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 158 (287)
T 3qou_A 80 AIPTVYLFQNGQPVDGFQ-GPQPEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLA 158 (287)
T ss_dssp SSSEEEEEETTEEEEEEE-SCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCeEEEEECCEEEEEee-CCCCHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHH
Confidence 566788888886654332 3321110 1132 2222 2358999999999988875 5688999999
Q ss_pred HHHHHcCCHHHHHHHHHHhCC
Q psy11525 115 GMATYSRDLATSEEAYAAIEQ 135 (244)
Q Consensus 115 ~~Al~~~~l~~A~~~y~~l~d 135 (244)
...+..++++.|+.+|.++-.
T Consensus 159 ~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 159 ETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHCCCHHHHHHHHHhCch
Confidence 999999999999999988743
No 20
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.28 E-value=0.01 Score=47.58 Aligned_cols=137 Identities=7% Similarity=-0.096 Sum_probs=94.5
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG 162 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~ 162 (244)
+...|++++|.+.++.. .....|..+|......++++.|...|.+.-.. -..........|.++...
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--------GMENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TCCSHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHh
Confidence 48899999999988774 46788999999999999999999888764211 111122335678999999
Q ss_pred CCHHHHHHHHHHCC-----CHH---HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHh
Q psy11525 163 GNISEAESILLQHG-----LIF---RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLR 230 (244)
Q Consensus 163 G~~~eAe~~~l~~g-----~~~---~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~ 230 (244)
|++++|...|.++- .+. ..-.++...+++++|++..++ ..+....++......+...|+ .++.+.|++
T Consensus 139 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999998752 222 224567889999999887765 233323444445555555555 566666666
Q ss_pred cc
Q psy11525 231 LQ 232 (244)
Q Consensus 231 ~~ 232 (244)
+.
T Consensus 219 ~~ 220 (243)
T 2q7f_A 219 AI 220 (243)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 21
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.27 E-value=0.0092 Score=50.36 Aligned_cols=77 Identities=12% Similarity=-0.070 Sum_probs=42.3
Q ss_pred HHHHHHcCCHHHHHHHHHHCC-----CH---HHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cc
Q psy11525 156 AEMYLLGGNISEAESILLQHG-----LI---FRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IE 223 (244)
Q Consensus 156 A~ia~~~G~~~eAe~~~l~~g-----~~---~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e 223 (244)
|.++...|++++|.+.|.+.- .+ ...-.++..+++|++|++..++ ..+............+...|+ .+
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 667777777777777776641 11 1224566777778877766554 233323333333333333444 55
Q ss_pred cHHHHHhcc
Q psy11525 224 TNEKFLRLQ 232 (244)
Q Consensus 224 ~~~~f~~~~ 232 (244)
+...|+++.
T Consensus 207 A~~~~~~a~ 215 (359)
T 3ieg_A 207 SLSEVRECL 215 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666553
No 22
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.25 E-value=0.0062 Score=59.79 Aligned_cols=137 Identities=11% Similarity=0.020 Sum_probs=98.1
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG 162 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~ 162 (244)
|.+.|++++|.+..+.. +....|..||....+.++++.|+.+|.+. |+.--+..+-...+|.++..+
T Consensus 19 ~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~A--------l~l~P~~~~a~~nLg~~l~~~ 90 (723)
T 4gyw_A 19 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA--------IRISPTFADAYSNMGNTLKEM 90 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------HHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHc
Confidence 48999999999988774 57889999999999999999999999763 111011122345689999999
Q ss_pred CCHHHHHHHHHHC-----CCHHH---HHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHh
Q psy11525 163 GNISEAESILLQH-----GLIFR---AIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLR 230 (244)
Q Consensus 163 G~~~eAe~~~l~~-----g~~~~---Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~ 230 (244)
|++++|.+.|.++ +.++. -=.+|.++|++++|++.-++ .++.....+.....-+...|+ .+..+.|++
T Consensus 91 g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~k 170 (723)
T 4gyw_A 91 QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK 170 (723)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHH
Confidence 9999999999775 22211 13468889999999876543 556545555555555555555 677777877
Q ss_pred cc
Q psy11525 231 LQ 232 (244)
Q Consensus 231 ~~ 232 (244)
+.
T Consensus 171 al 172 (723)
T 4gyw_A 171 LV 172 (723)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 23
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.23 E-value=0.018 Score=43.60 Aligned_cols=138 Identities=13% Similarity=-0.031 Sum_probs=95.9
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL 161 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~ 161 (244)
.+...|++++|....+.. .....|..+|......++++.|..+|.+.-.. -..........|.++..
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--------APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHH
Confidence 358899999999999875 35788999999999999999999888764211 11111223567889999
Q ss_pred cCCHHHHHHHHHHC-----CCHH---HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHH
Q psy11525 162 GGNISEAESILLQH-----GLIF---RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFL 229 (244)
Q Consensus 162 ~G~~~eAe~~~l~~-----g~~~---~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~ 229 (244)
.|++++|.+.|.++ +.+. .--.++...+++++|++..++ ..+....+.......+...|+ .++.+.|+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999764 2222 124678889999999888765 233333444455555556666 56666666
Q ss_pred hcc
Q psy11525 230 RLQ 232 (244)
Q Consensus 230 ~~~ 232 (244)
++.
T Consensus 169 ~~~ 171 (186)
T 3as5_A 169 KAN 171 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.22 E-value=0.0066 Score=50.86 Aligned_cols=145 Identities=10% Similarity=0.007 Sum_probs=89.2
Q ss_pred HHHcC-CHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC---------------------ChhH-H
Q psy11525 88 YAASH-SWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE---------------------QVDK-V 139 (244)
Q Consensus 88 ~l~~~-~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~---------------------d~~~-v 139 (244)
+...| ++++|.+..+.. .....|..+|......++++.|..+|.+.- ++.. +
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 47777 888888877663 345678888888888888888877766432 2221 1
Q ss_pred HHHHHhhCCCc----HHHHHHHHHHHcCCHHHHHHHHHHCCCH-----------------HHHHHHHHHhcCHHHHHHHH
Q psy11525 140 MYINHIKGIPV----KAAQQAEMYLLGGNISEAESILLQHGLI-----------------FRAIQVSILTHNWDRALELA 198 (244)
Q Consensus 140 ~~l~~i~~~~~----~~~~~A~ia~~~G~~~eAe~~~l~~g~~-----------------~~Ai~m~~~l~~W~~Al~LA 198 (244)
..++++..... ....+|.++...|++++|...|.++-.. ...-..+..++++++|++..
T Consensus 180 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 180 RFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 23333333321 1245788888888888888888765322 12345677888888887766
Q ss_pred Hh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525 199 LR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRLQ 232 (244)
Q Consensus 199 ~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~ 232 (244)
++ .++....++......+...|+ .++.+.|+++.
T Consensus 260 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 54 233333444444555555555 56666666653
No 25
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.19 E-value=0.013 Score=49.01 Aligned_cols=138 Identities=9% Similarity=-0.010 Sum_probs=85.3
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcC-CHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSR-DLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL 161 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~-~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~ 161 (244)
+...|++++|...+... .....|..+|......+ +++.|..+|.+.-... ..........|.++..
T Consensus 66 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 66 LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--------KTYGPAWIAYGHSFAV 137 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--------TTCTHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHH
Confidence 35666666666666553 34566666776666666 6666666655432110 1112234568899999
Q ss_pred cCCHHHHHHHHHHCCC--------HHHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHH
Q psy11525 162 GGNISEAESILLQHGL--------IFRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFL 229 (244)
Q Consensus 162 ~G~~~eAe~~~l~~g~--------~~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~ 229 (244)
.|++++|.+.|.++-. ....-.+|...+++++|++..++ ..+....++......+...|+ .++.+.|+
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9999999999877522 11234568889999999887765 333334445555555555555 56667776
Q ss_pred hccc
Q psy11525 230 RLQS 233 (244)
Q Consensus 230 ~~~~ 233 (244)
++.+
T Consensus 218 ~a~~ 221 (330)
T 3hym_B 218 DALE 221 (330)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 26
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.18 E-value=0.0079 Score=55.39 Aligned_cols=149 Identities=9% Similarity=-0.021 Sum_probs=89.6
Q ss_pred HHHHHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC-----Chh---------------
Q psy11525 83 SVLHSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE-----QVD--------------- 137 (244)
Q Consensus 83 ~~l~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~-----d~~--------------- 137 (244)
....-+...|++++|.++.+.+ .....|..+|....+.++++.|..+|.++- +..
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3344468999999999998875 468899999999999999999999988642 111
Q ss_pred -H-HHHHHHhhCCC----cHHHHHHHHHHHcCCHHHHHHHHHHC-----CC---HHHHHHHHHHhcCHHHHHHHHHhc--
Q psy11525 138 -K-VMYINHIKGIP----VKAAQQAEMYLLGGNISEAESILLQH-----GL---IFRAIQVSILTHNWDRALELALRH-- 201 (244)
Q Consensus 138 -~-v~~l~~i~~~~----~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~---~~~Ai~m~~~l~~W~~Al~LA~~~-- 201 (244)
. +..++++.... ......|.++...|++++|.++|.+. .. +..-..+|...|++++|+++-++.
T Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 424 DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1 11222222211 11234566677777777777777653 11 222355667777777776665543
Q ss_pred -------CCc-hhHHHHHHHHHHHHcCC-cccHHHHHhc
Q psy11525 202 -------KTH-IDTVLYQRKKYLDNLEK-IETNEKFLRL 231 (244)
Q Consensus 202 -------~~~-~~~vl~~r~~yl~~~~~-~e~~~~f~~~ 231 (244)
++. ...++......+...|+ .++.+.|+++
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 222 12333333444444444 4555555554
No 27
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.18 E-value=0.012 Score=49.58 Aligned_cols=79 Identities=14% Similarity=0.007 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHC-----CCHHH-------HHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHH
Q psy11525 154 QQAEMYLLGGNISEAESILLQH-----GLIFR-------AIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDN 218 (244)
Q Consensus 154 ~~A~ia~~~G~~~eAe~~~l~~-----g~~~~-------Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~ 218 (244)
..|.++...|++++|...|.++ ..+.. --..+..++++++|++..++ .++.-..++......+..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3488899999999999998864 22211 23578889999999887765 344434555566666666
Q ss_pred cCC-cccHHHHHhcc
Q psy11525 219 LEK-IETNEKFLRLQ 232 (244)
Q Consensus 219 ~~~-~e~~~~f~~~~ 232 (244)
.|+ .++.+.|+++.
T Consensus 319 ~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQ 333 (359)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 666 56777777664
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.13 E-value=0.0047 Score=53.38 Aligned_cols=84 Identities=11% Similarity=0.006 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHH
Q psy11525 83 SVLHSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAE 157 (244)
Q Consensus 83 ~~l~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ 157 (244)
..-..+...|++++|.+..+.. .....|..+|......++++.|+.+|.+.-... ..........|.
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~ 141 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--------PNNLKALMALAV 141 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHH
Confidence 3445568999999999998875 568899999999999999999999987642110 000111234455
Q ss_pred HHHHcCCHHHHHHHHHH
Q psy11525 158 MYLLGGNISEAESILLQ 174 (244)
Q Consensus 158 ia~~~G~~~eAe~~~l~ 174 (244)
++...|++++|.+.|.+
T Consensus 142 ~~~~~g~~~~A~~~~~~ 158 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKN 158 (365)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHH
Confidence 55555666655555544
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.12 E-value=0.01 Score=50.97 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHHHC-----CCHHH---HHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCCc-cc-HHHH
Q psy11525 162 GGNISEAESILLQH-----GLIFR---AIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEKI-ET-NEKF 228 (244)
Q Consensus 162 ~G~~~eAe~~~l~~-----g~~~~---Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~~-e~-~~~f 228 (244)
.|++++|..+|.+. +.+.. .-..+..+|+|++|.+.-++ .++.-.+++......+...|+. |. ...|
T Consensus 179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~ 258 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL 258 (291)
T ss_dssp TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 47888888888664 12221 12367888999998776654 3444445565666666666665 33 3455
Q ss_pred Hhc
Q psy11525 229 LRL 231 (244)
Q Consensus 229 ~~~ 231 (244)
+++
T Consensus 259 ~~~ 261 (291)
T 3mkr_A 259 SQL 261 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 30
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.03 E-value=0.011 Score=51.61 Aligned_cols=80 Identities=8% Similarity=-0.026 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHCCC-----H---HHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC
Q psy11525 153 AQQAEMYLLGGNISEAESILLQHGL-----I---FRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK 221 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eAe~~~l~~g~-----~---~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~ 221 (244)
...|.++...|++++|.+.|.++-. + ..--.++..++++++|++.-++ .++............+...|+
T Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 105 INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3455666666666666666654310 0 0112345556777777665433 233322333333333344444
Q ss_pred -cccHHHHHhcc
Q psy11525 222 -IETNEKFLRLQ 232 (244)
Q Consensus 222 -~e~~~~f~~~~ 232 (244)
.++.+.|+++.
T Consensus 185 ~~~A~~~~~~al 196 (388)
T 1w3b_A 185 IWLAIHHFEKAV 196 (388)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 45666666653
No 31
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.03 E-value=0.0071 Score=47.35 Aligned_cols=79 Identities=13% Similarity=-0.018 Sum_probs=58.5
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG 162 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~ 162 (244)
+...|++++|....+.. .+...|..||......++++-|..+|.+.- +.--..++.....|.++...
T Consensus 46 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al--------~l~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 46 FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF--------ALGKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHSSSCCHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH--------hhCCCCcHHHHHHHHHHHHc
Confidence 47889999999888774 568889999999999999999998887631 11112233445678888888
Q ss_pred CCHHHHHHHHHH
Q psy11525 163 GNISEAESILLQ 174 (244)
Q Consensus 163 G~~~eAe~~~l~ 174 (244)
|++++|...|.+
T Consensus 118 g~~~eA~~~~~~ 129 (151)
T 3gyz_A 118 KAPLKAKECFEL 129 (151)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 888888877754
No 32
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.02 E-value=0.012 Score=44.55 Aligned_cols=106 Identities=8% Similarity=-0.136 Sum_probs=77.8
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL 161 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~ 161 (244)
-+...|++++|....+.. .....|..+|......++++.|..+|.+.-.. -..........|.++..
T Consensus 51 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~ 122 (186)
T 3as5_A 51 AYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDN 122 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHH
Confidence 358899999999988774 46789999999999999999999888764211 11111223567899999
Q ss_pred cCCHHHHHHHHHHC-----CCH---HHHHHHHHHhcCHHHHHHHHHh
Q psy11525 162 GGNISEAESILLQH-----GLI---FRAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 162 ~G~~~eAe~~~l~~-----g~~---~~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
.|++++|...|.++ +.+ .....++...+++++|++..++
T Consensus 123 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999774 121 2234577888899998876553
No 33
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.01 E-value=0.015 Score=46.05 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=78.5
Q ss_pred HHHcCCHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCH
Q psy11525 88 YAASHSWPQALSLCRTL--NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNI 165 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~--~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~ 165 (244)
+...|+|++|....+.. .....|..+|......++++.|..+|.+.-.. -..........|.++...|++
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcccH
Confidence 47899999999998875 46789999999999999999999988763211 111122335689999999999
Q ss_pred HHHHHHHHHCCC------------------------HHHHHHHHHHhcCHHHHHHHHHh
Q psy11525 166 SEAESILLQHGL------------------------IFRAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 166 ~eAe~~~l~~g~------------------------~~~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
++|.+.|.++-. ...--..|..+++|++|++..++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999977532 11223567888999999776554
No 34
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.97 E-value=0.0087 Score=47.95 Aligned_cols=138 Identities=13% Similarity=0.033 Sum_probs=86.8
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL 161 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~ 161 (244)
.++..|++++|....... .....|..+|......++++.|..+|.+.-+. -..........|.++..
T Consensus 32 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 32 RGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--------DSSAATAYYGAGNVYVV 103 (243)
T ss_dssp ----------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCcchHHHHHHHHHHHH
Confidence 357788999888777664 46789999999999999999999988764211 11111223567899999
Q ss_pred cCCHHHHHHHHHHCC-----CHH---HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcC-CcccHHHHH
Q psy11525 162 GGNISEAESILLQHG-----LIF---RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLE-KIETNEKFL 229 (244)
Q Consensus 162 ~G~~~eAe~~~l~~g-----~~~---~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~-~~e~~~~f~ 229 (244)
.|++++|.+.|.++- .+. ..-.++...++|++|++..++ ..+....+.......+...| ..++...|.
T Consensus 104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998641 221 235678899999999987765 23332334444444444444 466777777
Q ss_pred hcc
Q psy11525 230 RLQ 232 (244)
Q Consensus 230 ~~~ 232 (244)
++.
T Consensus 184 ~~~ 186 (243)
T 2q7f_A 184 AVT 186 (243)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.97 E-value=0.017 Score=51.07 Aligned_cols=77 Identities=16% Similarity=0.025 Sum_probs=52.7
Q ss_pred HHHHHHcCCHHHHHHHHHHC-----CCH-------HHHHHHHHHhcCHHHHHHHHHhc---CCchhHHHHHHHHHHHHcC
Q psy11525 156 AEMYLLGGNISEAESILLQH-----GLI-------FRAIQVSILTHNWDRALELALRH---KTHIDTVLYQRKKYLDNLE 220 (244)
Q Consensus 156 A~ia~~~G~~~eAe~~~l~~-----g~~-------~~Ai~m~~~l~~W~~Al~LA~~~---~~~~~~vl~~r~~yl~~~~ 220 (244)
|.++...|++++|...|.++ +.+ .....++..++++++|++..++. .+....++......+...|
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 88888999999999999775 222 22256788889999998887652 3443455555555555555
Q ss_pred C-cccHHHHHhcc
Q psy11525 221 K-IETNEKFLRLQ 232 (244)
Q Consensus 221 ~-~e~~~~f~~~~ 232 (244)
+ .++...|+++.
T Consensus 344 ~~~~A~~~~~~al 356 (450)
T 2y4t_A 344 MYDEAIQDYETAQ 356 (450)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5 56666666663
No 36
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.96 E-value=0.012 Score=41.92 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=53.0
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL 161 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~ 161 (244)
-+...|++++|.++.+.. .....|..+|......++++.|...|.+.-.. -..........|.++..
T Consensus 10 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 10 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHH
Confidence 357788999988877653 45677888888888888888888887753211 00111122345667777
Q ss_pred cCCHHHHHHHHHH
Q psy11525 162 GGNISEAESILLQ 174 (244)
Q Consensus 162 ~G~~~eAe~~~l~ 174 (244)
.|++++|.+.|.+
T Consensus 82 ~~~~~~A~~~~~~ 94 (136)
T 2fo7_A 82 QGDYDEAIEYYQK 94 (136)
T ss_dssp TTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHH
Confidence 7777777776654
No 37
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.96 E-value=0.016 Score=50.54 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q psy11525 153 AQQAEMYLLGGNISEAESILLQ 174 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eAe~~~l~ 174 (244)
...|.++...|++++|.+.|.+
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 139 SDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHH
Confidence 3456666677777777776644
No 38
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.94 E-value=0.026 Score=48.25 Aligned_cols=79 Identities=15% Similarity=0.008 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHCC-----CH---HHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-
Q psy11525 154 QQAEMYLLGGNISEAESILLQHG-----LI---FRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK- 221 (244)
Q Consensus 154 ~~A~ia~~~G~~~eAe~~~l~~g-----~~---~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~- 221 (244)
..|.++...|++++|...|.++- .+ ..--.++..++++++|++..++ ..+....++......+...|+
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence 35666666677777666665531 11 1123455666777776665544 223322333333333333333
Q ss_pred cccHHHHHhcc
Q psy11525 222 IETNEKFLRLQ 232 (244)
Q Consensus 222 ~e~~~~f~~~~ 232 (244)
.++.+.|+++.
T Consensus 302 ~~A~~~~~~al 312 (368)
T 1fch_A 302 REAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555553
No 39
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.92 E-value=0.034 Score=46.31 Aligned_cols=145 Identities=14% Similarity=0.023 Sum_probs=90.6
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC----------------------------
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE---------------------------- 134 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~---------------------------- 134 (244)
+...|++++|....+.. .....|..+|......++++.|..+|.+.-
T Consensus 65 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 65 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHH
Confidence 47788888888877664 456778888888888888888888776531
Q ss_pred C--------hh-HHHHHHHhhCCC----cHHHHHHHHHHHcCCHHHHHHHHHHC-----CCH---HHHHHHHHHhcCHHH
Q psy11525 135 Q--------VD-KVMYINHIKGIP----VKAAQQAEMYLLGGNISEAESILLQH-----GLI---FRAIQVSILTHNWDR 193 (244)
Q Consensus 135 d--------~~-~v~~l~~i~~~~----~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~---~~Ai~m~~~l~~W~~ 193 (244)
. +. .+..++++.... ......|.++...|++++|.+.|.++ +.+ ...-.++...++|++
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 1 00 112222222221 12245788889999999999998764 111 223567888999999
Q ss_pred HHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525 194 ALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRLQ 232 (244)
Q Consensus 194 Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~ 232 (244)
|++..++ ..+............+...|+ .++.+.|+++.
T Consensus 225 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9887655 233333344444444455555 56666666653
No 40
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.89 E-value=0.06 Score=44.78 Aligned_cols=83 Identities=13% Similarity=-0.055 Sum_probs=57.7
Q ss_pred HHHHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHH
Q psy11525 84 VLHSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEM 158 (244)
Q Consensus 84 ~l~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~i 158 (244)
.-..++..|++++|..+.+.. .....|..+|......++++.|..+|.+.-... ..........|.+
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~ 98 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------PKDIAVHAALAVS 98 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------cCCHHHHHHHHHH
Confidence 344568999999999988775 467899999999999999999999887642110 0011122345666
Q ss_pred HHHcCCHHHHHHHHHH
Q psy11525 159 YLLGGNISEAESILLQ 174 (244)
Q Consensus 159 a~~~G~~~eAe~~~l~ 174 (244)
+...|++++|.+.|.+
T Consensus 99 ~~~~~~~~~A~~~~~~ 114 (327)
T 3cv0_A 99 HTNEHNANAALASLRA 114 (327)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 6666676666665544
No 41
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.86 E-value=0.01 Score=45.54 Aligned_cols=122 Identities=11% Similarity=-0.008 Sum_probs=65.2
Q ss_pred cCCHHHHHHHHhcc-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHHHHcCC
Q psy11525 91 SHSWPQALSLCRTL-N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMYLLGGN 164 (244)
Q Consensus 91 ~~~~~~A~~~~~~~-~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia~~~G~ 164 (244)
.|++++|+...... . ....|-.||....+.++++.|+.+|.+.= ++.. ..+.....|.++...|+
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al---------~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI---------NVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHTTC
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHHHHHHHHHHHHcCc
Confidence 44555665554442 1 23344556666666666666666665421 1111 11122445666666666
Q ss_pred HHHHHHHHHHC-----CCHHHH---HHHHHHhcCHHHHH----HHHHhcCCchhHHHHHHHHHHHHcCC
Q psy11525 165 ISEAESILLQH-----GLIFRA---IQVSILTHNWDRAL----ELALRHKTHIDTVLYQRKKYLDNLEK 221 (244)
Q Consensus 165 ~~eAe~~~l~~-----g~~~~A---i~m~~~l~~W~~Al----~LA~~~~~~~~~vl~~r~~yl~~~~~ 221 (244)
+++|...|.++ +.++.- -.+|..++++++|. +-|.+.+|.-..+...+.+.+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 66666666554 222211 23455666665432 33555566656777788888877775
No 42
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.86 E-value=0.014 Score=50.21 Aligned_cols=145 Identities=14% Similarity=-0.036 Sum_probs=98.2
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCh--------------------------
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQV-------------------------- 136 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~-------------------------- 136 (244)
|...|++++|....+.. .....|..+|......++++.|..+|.+.-..
T Consensus 109 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 109 QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHh
Confidence 48899999999988774 56889999999999999999999988764221
Q ss_pred -----hH-HHHHHHhhCC-C---c--HHHHHHHHHHHcCCHHHHHHHHHHCC-----CH---HHHHHHHHHhcCHHHHHH
Q psy11525 137 -----DK-VMYINHIKGI-P---V--KAAQQAEMYLLGGNISEAESILLQHG-----LI---FRAIQVSILTHNWDRALE 196 (244)
Q Consensus 137 -----~~-v~~l~~i~~~-~---~--~~~~~A~ia~~~G~~~eAe~~~l~~g-----~~---~~Ai~m~~~l~~W~~Al~ 196 (244)
.. +..++++..+ + + .....|.++...|++++|.+.|.++- .+ ..--..|..++++++|++
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 11 1222222222 1 1 22457889999999999999997741 11 223567888999999988
Q ss_pred HHHh---cCCchhHHHHHHHHHHHHcC-CcccHHHHHhcc
Q psy11525 197 LALR---HKTHIDTVLYQRKKYLDNLE-KIETNEKFLRLQ 232 (244)
Q Consensus 197 LA~~---~~~~~~~vl~~r~~yl~~~~-~~e~~~~f~~~~ 232 (244)
..++ ..+....++......+...| ..++.+.|+++.
T Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7654 34443344444444444444 467777787774
No 43
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.86 E-value=0.013 Score=48.53 Aligned_cols=140 Identities=13% Similarity=0.065 Sum_probs=92.3
Q ss_pred HHHcCCHHHHHHHHhccC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc----
Q psy11525 88 YAASHSWPQALSLCRTLN-------------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV---- 150 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~~-------------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~---- 150 (244)
|...|++++|..+.+... ....|..+|......++++.|..+|.+.- ...++......
T Consensus 37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~ 111 (311)
T 3nf1_A 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL-----AIREKTLGKDHPAVA 111 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHCTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHHhCCCChHHH
Confidence 588999999998886641 23568889999999999999999987642 22333311111
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHCCCH----------HHH------HHHHHHhcCHHHHHHHHHhc-----------C
Q psy11525 151 -KAAQQAEMYLLGGNISEAESILLQHGLI----------FRA------IQVSILTHNWDRALELALRH-----------K 202 (244)
Q Consensus 151 -~~~~~A~ia~~~G~~~eAe~~~l~~g~~----------~~A------i~m~~~l~~W~~Al~LA~~~-----------~ 202 (244)
....+|.++...|++++|...|.++-.. ..+ -.++...++|++|++..++- .
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2346789999999999999998875332 222 34677889999988765542 1
Q ss_pred CchhHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525 203 THIDTVLYQRKKYLDNLEK-IETNEKFLRLQ 232 (244)
Q Consensus 203 ~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~ 232 (244)
+..-.++......+...|+ .++.+.|.++.
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222333344444445555 67777777664
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.86 E-value=0.011 Score=48.47 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHC
Q psy11525 153 AQQAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eAe~~~l~~ 175 (244)
...|.++...|++++|.+.|.++
T Consensus 112 ~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 112 GQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHGGG
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 45666666777777777776665
No 45
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.81 E-value=0.016 Score=43.68 Aligned_cols=79 Identities=18% Similarity=0.113 Sum_probs=60.0
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG 162 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~ 162 (244)
++..|+|++|....+.. .+...|..+|......++++.|..+|.+.-. .--..+......|.++...
T Consensus 28 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 28 QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL--------MDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCTHHHHHHHHHHHHT
T ss_pred HHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--------cCCCCcHHHHHHHHHHHHc
Confidence 58999999999988774 5788999999999999999999999976321 1111223345678888888
Q ss_pred CCHHHHHHHHHH
Q psy11525 163 GNISEAESILLQ 174 (244)
Q Consensus 163 G~~~eAe~~~l~ 174 (244)
|++++|.+.|.+
T Consensus 100 g~~~~A~~~~~~ 111 (142)
T 2xcb_A 100 GDLDGAESGFYS 111 (142)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 888888877643
No 46
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.79 E-value=0.011 Score=50.74 Aligned_cols=131 Identities=7% Similarity=-0.079 Sum_probs=76.9
Q ss_pred HHcCCHHHHHHHHhcc-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525 89 AASHSWPQALSLCRTL-------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL 161 (244)
Q Consensus 89 l~~~~~~~A~~~~~~~-------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~ 161 (244)
...+++++|.+..+.+ .....|-.+|......++++.|..+|.+- ...+.....|.++..
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~-------------~~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG-------------DSLECMAMTVQILLK 142 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTC-------------CSHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCC-------------CCHHHHHHHHHHHHH
Confidence 4455677777666542 14566677777777777777777776651 111223456778888
Q ss_pred cCCHHHHHHHHHHCCC--HHHH--------HHHHHHhcCHHHHHHHHHhc---CCchhHHHHHHHHHHHHcCC-cccHHH
Q psy11525 162 GGNISEAESILLQHGL--IFRA--------IQVSILTHNWDRALELALRH---KTHIDTVLYQRKKYLDNLEK-IETNEK 227 (244)
Q Consensus 162 ~G~~~eAe~~~l~~g~--~~~A--------i~m~~~l~~W~~Al~LA~~~---~~~~~~vl~~r~~yl~~~~~-~e~~~~ 227 (244)
.|++++|.+.|.+.-. |+.. +.++...+++++|+.+-++. .+.-..++......+...|+ .++.+.
T Consensus 143 ~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888876521 1111 23333447788887665442 33333445555556666665 566666
Q ss_pred HHhcc
Q psy11525 228 FLRLQ 232 (244)
Q Consensus 228 f~~~~ 232 (244)
|+++.
T Consensus 223 l~~al 227 (291)
T 3mkr_A 223 LQEAL 227 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 47
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.79 E-value=0.015 Score=44.70 Aligned_cols=79 Identities=20% Similarity=0.141 Sum_probs=59.1
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG 162 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~ 162 (244)
+...|++++|....+.. .....|..+|......++++.|..+|.+.-. .--..+......|.++...
T Consensus 31 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 31 QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--------MDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HSTTCTHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--------cCCCCchHHHHHHHHHHHc
Confidence 58899999999888764 5788999999999999999999999976321 1111223345678888888
Q ss_pred CCHHHHHHHHHH
Q psy11525 163 GNISEAESILLQ 174 (244)
Q Consensus 163 G~~~eAe~~~l~ 174 (244)
|++++|...|.+
T Consensus 103 g~~~~A~~~~~~ 114 (148)
T 2vgx_A 103 GELAEAESGLFL 114 (148)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 888888776643
No 48
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.76 E-value=0.02 Score=43.00 Aligned_cols=80 Identities=10% Similarity=0.013 Sum_probs=58.1
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG 162 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~ 162 (244)
+...|+|++|....... .....|..+|......++++.|..+|.+.-... ..........|.++...
T Consensus 23 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--------KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHT
T ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHh
Confidence 57899999999887763 467889999999999999999988887532110 11112235678888888
Q ss_pred CCHHHHHHHHHHC
Q psy11525 163 GNISEAESILLQH 175 (244)
Q Consensus 163 G~~~eAe~~~l~~ 175 (244)
|++++|...|.++
T Consensus 95 ~~~~~A~~~~~~a 107 (166)
T 1a17_A 95 GKFRAALRDYETV 107 (166)
T ss_dssp TCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 8888888877654
No 49
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.75 E-value=0.015 Score=45.32 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q psy11525 83 SVLHSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE 134 (244)
Q Consensus 83 ~~l~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~ 134 (244)
..-..++..|++++|...++.. .....|..+|...+..++++.|+.+|.+.-
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 3445579999999999999885 567899999999999999999999998764
No 50
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.68 E-value=0.047 Score=46.61 Aligned_cols=147 Identities=10% Similarity=-0.011 Sum_probs=90.9
Q ss_pred HHHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC---------------------ChhH
Q psy11525 85 LHSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE---------------------QVDK 138 (244)
Q Consensus 85 l~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~---------------------d~~~ 138 (244)
-..+...|++++|....+.. .....|..+|......++++.|..+|.+.- ++..
T Consensus 71 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 150 (368)
T 1fch_A 71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQ 150 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34467888888888877664 456788888888888888888887776432 1111
Q ss_pred H-HHHHHhhCCCc--HHH------------------HHHHHHHHcCCHHHHHHHHHHCC-------CH---HHHHHHHHH
Q psy11525 139 V-MYINHIKGIPV--KAA------------------QQAEMYLLGGNISEAESILLQHG-------LI---FRAIQVSIL 187 (244)
Q Consensus 139 v-~~l~~i~~~~~--~~~------------------~~A~ia~~~G~~~eAe~~~l~~g-------~~---~~Ai~m~~~ 187 (244)
. ..++++..... ... ..+.+. ..|++++|...|.++- .+ ...-.+|..
T Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~ 229 (368)
T 1fch_A 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229 (368)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence 1 12222222111 000 244454 8899999999998751 11 223567888
Q ss_pred hcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525 188 THNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRLQ 232 (244)
Q Consensus 188 l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~ 232 (244)
.++|++|++..++ ..+....++......+...|+ .++.+.|.++.
T Consensus 230 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 278 (368)
T 1fch_A 230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL 278 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999887654 334434455555555556665 56677777663
No 51
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.074 Score=47.39 Aligned_cols=46 Identities=7% Similarity=0.022 Sum_probs=35.2
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
++..|++++|...++.. .....|..+|......++++.|..+|.++
T Consensus 49 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 49 YVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 47788888888877764 45677888888888888888888888765
No 52
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.64 E-value=0.029 Score=50.59 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=76.8
Q ss_pred HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC---------------------ChhHH-HH
Q psy11525 89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE---------------------QVDKV-MY 141 (244)
Q Consensus 89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~---------------------d~~~v-~~ 141 (244)
...|++++|....+.. .....|..+|......++++.|..+|.+.- ++... ..
T Consensus 287 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 287 ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp CCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5566666666665543 345666666666666666666666554331 11110 11
Q ss_pred HHHhhC----CCcHHHHHHHHHHHcCCHHHHHHHHHHCCCHH--------------HHHHHHHHh----------cCHHH
Q psy11525 142 INHIKG----IPVKAAQQAEMYLLGGNISEAESILLQHGLIF--------------RAIQVSILT----------HNWDR 193 (244)
Q Consensus 142 l~~i~~----~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~--------------~Ai~m~~~l----------~~W~~ 193 (244)
++++.. ........|.++...|++++|.+.|.++-... ..-..+... ++|++
T Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence 111111 11223456778888888888888877641111 111455555 88888
Q ss_pred HHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525 194 ALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRLQ 232 (244)
Q Consensus 194 Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~ 232 (244)
|+...++ ..+....+.......+...|+ .++.+.|+++.
T Consensus 447 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 447 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8776654 233333444444444455555 56666666653
No 53
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.56 E-value=0.045 Score=41.89 Aligned_cols=80 Identities=11% Similarity=0.004 Sum_probs=57.7
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL 161 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~ 161 (244)
.+...|+|++|....+.. .....|..+|......++++.|..+|.+.-.. --........+|.++..
T Consensus 20 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 20 AAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--------DPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH
Confidence 358899999999887764 46889999999999999999998888753211 01111223567888888
Q ss_pred cCCHHHHHHHHHH
Q psy11525 162 GGNISEAESILLQ 174 (244)
Q Consensus 162 ~G~~~eAe~~~l~ 174 (244)
.|++++|...|.+
T Consensus 92 ~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 92 MADYKGAKEAYEK 104 (164)
T ss_dssp TTCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 8888888777653
No 54
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.55 E-value=0.023 Score=42.43 Aligned_cols=78 Identities=13% Similarity=0.114 Sum_probs=53.6
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-CcHHHHHHHHHHH
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQQAEMYLL 161 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~~~~~~A~ia~~ 161 (244)
|...|+|++|.+..... .....|..+|......++++.|..+|.+.= ++..- .+....+|.++..
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---------~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCI---------RLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH---------HhhhhhhHHHHHHHHHHHH
Confidence 58888888888876653 467888888888888888888888776521 11111 1123457777777
Q ss_pred cCCHHHHHHHHHH
Q psy11525 162 GGNISEAESILLQ 174 (244)
Q Consensus 162 ~G~~~eAe~~~l~ 174 (244)
+|++++|.+.|.+
T Consensus 94 ~~~~~~A~~~~~~ 106 (126)
T 4gco_A 94 MREWSKAQRAYED 106 (126)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8887777776654
No 55
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.53 E-value=0.037 Score=45.70 Aligned_cols=108 Identities=13% Similarity=-0.003 Sum_probs=76.1
Q ss_pred HHHcCCHHHHHHHHhccC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc----
Q psy11525 88 YAASHSWPQALSLCRTLN-------------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV---- 150 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~~-------------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~---- 150 (244)
|...|++++|....+... ....|..+|......++++.|..+|.+.- ...+.+.....
T Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~ 153 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-----EIREKVLGKDHPDVA 153 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----HHHHHHHCTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-----HHHHHhcCCCChHHH
Confidence 478899999998776631 24578889999999999999999988743 22222211111
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHCCC----------HHHH------HHHHHHhcCHHHHHHHHHh
Q psy11525 151 -KAAQQAEMYLLGGNISEAESILLQHGL----------IFRA------IQVSILTHNWDRALELALR 200 (244)
Q Consensus 151 -~~~~~A~ia~~~G~~~eAe~~~l~~g~----------~~~A------i~m~~~l~~W~~Al~LA~~ 200 (244)
.....|.++...|++++|...|.++-. +..+ -.+|..++++++|++..++
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 224578899999999999998877622 2222 4567888999999876644
No 56
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.026 Score=41.11 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=56.6
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL 161 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~ 161 (244)
.+...|+|++|....... .....|..+|......++++.|..+|.+.-.. --.........|.++..
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--------DPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHH
Confidence 358899999998887663 46788999999999999999888888753211 01111223557788888
Q ss_pred cCCHHHHHHHHHH
Q psy11525 162 GGNISEAESILLQ 174 (244)
Q Consensus 162 ~G~~~eAe~~~l~ 174 (244)
.|++++|...|.+
T Consensus 85 ~~~~~~A~~~~~~ 97 (126)
T 3upv_A 85 VKEYASALETLDA 97 (126)
T ss_dssp TTCHHHHHHHHHH
T ss_pred HhCHHHHHHHHHH
Confidence 8888887776644
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.49 E-value=0.062 Score=41.45 Aligned_cols=120 Identities=11% Similarity=0.058 Sum_probs=81.8
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHHHHcCCHHHHHHHHHHC----CCH
Q psy11525 104 LNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMYLLGGNISEAESILLQH----GLI 178 (244)
Q Consensus 104 ~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia~~~G~~~eAe~~~l~~----g~~ 178 (244)
+++...|..||......|+++-|+.+|.+.= ++.. ..+.....|.++...|++++|...|.++ ...
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al---------~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~ 72 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVL---------KADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS 72 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence 5688999999999999999999999998631 1111 1122356799999999999999988765 111
Q ss_pred HH----HHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525 179 FR----AIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRLQ 232 (244)
Q Consensus 179 ~~----Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~ 232 (244)
.. .-..+...++++.|.+...+ ..+.-..........+...|+ .++.+.|+++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l 134 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI 134 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 11 23567788999998876554 344434445555555555665 67777787764
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.39 E-value=0.32 Score=39.95 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=25.5
Q ss_pred cCCHHHHHHHHhc---cCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q psy11525 91 SHSWPQALSLCRT---LNDDILWACLAGMATY----SRDLATSEEAYAA 132 (244)
Q Consensus 91 ~~~~~~A~~~~~~---~~~~~lW~~LA~~Al~----~~~l~~A~~~y~~ 132 (244)
.+++++|.+..+. ......|..||..... .++++.|...|.+
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 103 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSK 103 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHH
Confidence 6666666655544 2455666666666666 6666666666553
No 59
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.35 E-value=0.019 Score=42.51 Aligned_cols=80 Identities=13% Similarity=-0.045 Sum_probs=60.5
Q ss_pred HHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHH
Q psy11525 86 HSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMY 159 (244)
Q Consensus 86 ~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia 159 (244)
..++..|++++|....+.. .....|..+|......++++.|+.+|.+.= ++.. ..+.....|.++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---------~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR---------MLDPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHHHHHHHHHH
Confidence 4568999999999988775 578999999999999999999999987531 1111 112234578888
Q ss_pred HHcCCHHHHHHHHHH
Q psy11525 160 LLGGNISEAESILLQ 174 (244)
Q Consensus 160 ~~~G~~~eAe~~~l~ 174 (244)
...|++++|...|.+
T Consensus 96 ~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 96 TNEHNANAALASLRA 110 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 888888888887765
No 60
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.35 E-value=0.16 Score=41.18 Aligned_cols=140 Identities=13% Similarity=0.075 Sum_probs=91.9
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL 161 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~ 161 (244)
.+...|++++|....+.. .....|..+|......++++.|..+|.+.-... .............|.++..
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-----NATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----CTTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-----CchhHHHHHHHHHHHHHHH
Confidence 358899999999988774 345689999999999999999999998653211 0000011123578999999
Q ss_pred cCCHHHHHHHHHHCCC-----H---HHHHHHHHHhcCHHHHHHHHHhc---CCchhHHHHHHH-HHHHHcCCcccHHHHH
Q psy11525 162 GGNISEAESILLQHGL-----I---FRAIQVSILTHNWDRALELALRH---KTHIDTVLYQRK-KYLDNLEKIETNEKFL 229 (244)
Q Consensus 162 ~G~~~eAe~~~l~~g~-----~---~~Ai~m~~~l~~W~~Al~LA~~~---~~~~~~vl~~r~-~yl~~~~~~e~~~~f~ 229 (244)
.|++++|.+.|.++-. + ...-.+|..+++|++|++..++. ++....++.... ..+......++.+.|.
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887521 1 12245778889999998887653 233333333343 3333334455555555
Q ss_pred hc
Q psy11525 230 RL 231 (244)
Q Consensus 230 ~~ 231 (244)
++
T Consensus 167 ~a 168 (272)
T 3u4t_A 167 KV 168 (272)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 61
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.31 E-value=0.064 Score=48.30 Aligned_cols=137 Identities=7% Similarity=-0.035 Sum_probs=96.9
Q ss_pred HHHcCCHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcC
Q psy11525 88 YAASHSWPQALSLCRTL----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGG 163 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G 163 (244)
+...|++++|...++.. +....|..+|......++++.|..+|.+.-. .-..........|.++...|
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVD--------LNPEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTT
T ss_pred HHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhc--------cCCCCHHHHHHHHHHHHhcC
Confidence 47889999999988774 4478899999999999999999988876421 11111223456899999999
Q ss_pred CHHHHHHHHHHCC-----CH---HHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHhc
Q psy11525 164 NISEAESILLQHG-----LI---FRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRL 231 (244)
Q Consensus 164 ~~~eAe~~~l~~g-----~~---~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~ 231 (244)
++++|...|.++- .+ ...-.++..+++|++|++..++ ..+....+.......+...|+ .++.+.|.++
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999998751 11 1235678899999999887755 234334455556666666666 5666777765
Q ss_pred c
Q psy11525 232 Q 232 (244)
Q Consensus 232 ~ 232 (244)
.
T Consensus 405 ~ 405 (537)
T 3fp2_A 405 K 405 (537)
T ss_dssp H
T ss_pred H
Confidence 3
No 62
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.28 E-value=0.037 Score=51.47 Aligned_cols=79 Identities=9% Similarity=-0.100 Sum_probs=42.8
Q ss_pred HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcC
Q psy11525 89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGG 163 (244)
Q Consensus 89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G 163 (244)
...|++++|.+..+.. .....|..+|......++++.|..+|.+.-.. -....+.....|.++...|
T Consensus 34 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g 105 (568)
T 2vsy_A 34 LGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAG 105 (568)
T ss_dssp HHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcC
Confidence 5566666666665553 34556666666666666666666665542110 0001112234566666666
Q ss_pred CHHHHHHHHHHC
Q psy11525 164 NISEAESILLQH 175 (244)
Q Consensus 164 ~~~eAe~~~l~~ 175 (244)
++++|.+.|.++
T Consensus 106 ~~~~A~~~~~~a 117 (568)
T 2vsy_A 106 QAEAAAAAYTRA 117 (568)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666666666553
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.28 E-value=0.091 Score=45.83 Aligned_cols=140 Identities=7% Similarity=0.054 Sum_probs=93.3
Q ss_pred HHHcCCHHHHHHHHhcc-------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc---HHH
Q psy11525 88 YAASHSWPQALSLCRTL-------ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV---KAA 153 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-------~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~---~~~ 153 (244)
|...|++++|....... .. ...|..+|......++++.|..+|.+.- ...+.....+. ...
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI-----AVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCGGGHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHhhccchhHHHHHH
Confidence 47789999998877653 11 1478889999999999999999887632 22222222111 235
Q ss_pred HHHHHHHHcCCHHHHHHHHHHCCC-------HHH------HHHHHHHhcC---HHHHHHHHHhcCCc--hhHHHHHHHHH
Q psy11525 154 QQAEMYLLGGNISEAESILLQHGL-------IFR------AIQVSILTHN---WDRALELALRHKTH--IDTVLYQRKKY 215 (244)
Q Consensus 154 ~~A~ia~~~G~~~eAe~~~l~~g~-------~~~------Ai~m~~~l~~---W~~Al~LA~~~~~~--~~~vl~~r~~y 215 (244)
..|.++...|++++|...|.++=. +.. .-.+|...++ +++|+.+.++.+.. ...+...-...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 689999999999999999876522 211 1234455566 89999999988643 45555555666
Q ss_pred HHHcCC-cccHHHHHhcc
Q psy11525 216 LDNLEK-IETNEKFLRLQ 232 (244)
Q Consensus 216 l~~~~~-~e~~~~f~~~~ 232 (244)
+...|+ .++.+.|+++.
T Consensus 349 y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666 56666666664
No 64
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.25 E-value=0.041 Score=44.57 Aligned_cols=135 Identities=12% Similarity=-0.014 Sum_probs=84.2
Q ss_pred HHHHHHHHhcc---C---CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc-----HHHHHHHHHHHc
Q psy11525 94 WPQALSLCRTL---N---DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV-----KAAQQAEMYLLG 162 (244)
Q Consensus 94 ~~~A~~~~~~~---~---~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~-----~~~~~A~ia~~~ 162 (244)
+++|+++++.. . ....|..+|......++++.|+.+|.+.- ...++...... ....+|.++...
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-----AIREKTLGKDHPAVAATLNNLAVLYGKR 98 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHTCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-----HHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 34555555442 2 35678899999999999999999998642 22333311111 234679999999
Q ss_pred CCHHHHHHHHHHCCCH----------HHH------HHHHHHhcCHHHHHHHHHhc-----------CCchhHHHHHHHHH
Q psy11525 163 GNISEAESILLQHGLI----------FRA------IQVSILTHNWDRALELALRH-----------KTHIDTVLYQRKKY 215 (244)
Q Consensus 163 G~~~eAe~~~l~~g~~----------~~A------i~m~~~l~~W~~Al~LA~~~-----------~~~~~~vl~~r~~y 215 (244)
|++++|.+.|.++-.. ..+ -..|..+++|++|++..++- .+..-.++......
T Consensus 99 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 178 (283)
T 3edt_B 99 GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC 178 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999876332 222 34677889999887766542 11122333333444
Q ss_pred HHHcCC-cccHHHHHhccc
Q psy11525 216 LDNLEK-IETNEKFLRLQS 233 (244)
Q Consensus 216 l~~~~~-~e~~~~f~~~~~ 233 (244)
+...|+ .++.+.|.++.+
T Consensus 179 ~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 179 YLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 444455 677777776643
No 65
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.22 E-value=0.046 Score=38.74 Aligned_cols=78 Identities=6% Similarity=-0.055 Sum_probs=49.9
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG 162 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~ 162 (244)
+...|++++|....... .....|..+|......++++.|..+|.+.-.. -..........|.++...
T Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--------DPAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT
T ss_pred HHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--------CccCHHHHHHHHHHHHHh
Confidence 47788888888877653 45678888888888888888888877653211 001111224456666666
Q ss_pred CCHHHHHHHHH
Q psy11525 163 GNISEAESILL 173 (244)
Q Consensus 163 G~~~eAe~~~l 173 (244)
|++++|...|.
T Consensus 94 ~~~~~A~~~~~ 104 (131)
T 2vyi_A 94 NKHVEAVAYYK 104 (131)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 66666665554
No 66
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.21 E-value=0.054 Score=37.65 Aligned_cols=79 Identities=10% Similarity=0.026 Sum_probs=45.6
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG 162 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~ 162 (244)
+...|+|++|.+..... .....|..+|......++++.|..+|.+.-.. -..........|.++...
T Consensus 14 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 14 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHH
Confidence 46777777777766653 35667777777777777777777666543211 000111123455666666
Q ss_pred CCHHHHHHHHHH
Q psy11525 163 GNISEAESILLQ 174 (244)
Q Consensus 163 G~~~eAe~~~l~ 174 (244)
|++++|.+.|.+
T Consensus 86 ~~~~~A~~~~~~ 97 (118)
T 1elw_A 86 NRFEEAKRTYEE 97 (118)
T ss_dssp TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 666666655543
No 67
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.18 E-value=0.28 Score=41.21 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=91.5
Q ss_pred HHHHHHHcCCHHHHHHHHhcc-C----CH-----HHHHH-HHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc--
Q psy11525 84 VLHSYAASHSWPQALSLCRTL-N----DD-----ILWAC-LAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV-- 150 (244)
Q Consensus 84 ~l~~~l~~~~~~~A~~~~~~~-~----~~-----~lW~~-LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~-- 150 (244)
.+..++..|++++|..++... . .+ ..|.. +|......++++.|...|.+.= .......+
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al--------~~~~~~~~~~ 152 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL--------NQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH--------HTCCCCSCTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH--------HHhcccccHH
Confidence 355678999999999998774 1 11 23554 7777777778888888776531 11111222
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHCC--------CHHHH-------HHHHHHhcCHHHHHHHH-------HhcCCc
Q psy11525 151 ----KAAQQAEMYLLGGNISEAESILLQHG--------LIFRA-------IQVSILTHNWDRALELA-------LRHKTH 204 (244)
Q Consensus 151 ----~~~~~A~ia~~~G~~~eAe~~~l~~g--------~~~~A-------i~m~~~l~~W~~Al~LA-------~~~~~~ 204 (244)
-....|.++...|++++|...|.++= ..... -..|..++++++|++.. ...+..
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 13457889999999999999887752 22111 23567788888876654 344322
Q ss_pred --hhHHHHHHHHHHHHcC-C-cccHHHHHhcc
Q psy11525 205 --IDTVLYQRKKYLDNLE-K-IETNEKFLRLQ 232 (244)
Q Consensus 205 --~~~vl~~r~~yl~~~~-~-~e~~~~f~~~~ 232 (244)
+..++......+...| . .++.+.|+++-
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4566666666667788 4 67777777763
No 68
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.049 Score=48.56 Aligned_cols=79 Identities=11% Similarity=-0.067 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHCC--------------CHHHHHHHHHH---hcCHHHHHHHHHh---cCCchhHHHHHH
Q psy11525 153 AQQAEMYLLGGNISEAESILLQHG--------------LIFRAIQVSIL---THNWDRALELALR---HKTHIDTVLYQR 212 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eAe~~~l~~g--------------~~~~Ai~m~~~---l~~W~~Al~LA~~---~~~~~~~vl~~r 212 (244)
...|.++...|++++|...|.++- -....-..+.. .+++++|++..++ ..+.........
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 455 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456778888888888888776541 11222345556 7888888766544 233323333444
Q ss_pred HHHHHHcCC-cccHHHHHhc
Q psy11525 213 KKYLDNLEK-IETNEKFLRL 231 (244)
Q Consensus 213 ~~yl~~~~~-~e~~~~f~~~ 231 (244)
...+...|+ .++.+.|+++
T Consensus 456 a~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 444444444 5566666655
No 69
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.16 E-value=0.13 Score=47.76 Aligned_cols=115 Identities=12% Similarity=0.147 Sum_probs=82.3
Q ss_pred HHHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHH-----------------HHHHHhCChhHH-HHHHHhhCCC
Q psy11525 88 YAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSE-----------------EAYAAIEQVDKV-MYINHIKGIP 149 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~-----------------~~y~~l~d~~~v-~~l~~i~~~~ 149 (244)
+...|+|++|++.++...+...|..+...|+..++++.|. .+|.+.|.+.-+ .+++....++
T Consensus 158 L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 158 LVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp HHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred HHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 4889999999999999999999999999999999999988 456777776666 7777776665
Q ss_pred cHHH----HHHHHHH--HcCCHHHHHHHH-------------HHCCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q psy11525 150 VKAA----QQAEMYL--LGGNISEAESIL-------------LQHGLIFRAIQVSILTHNWDRALELALRHK 202 (244)
Q Consensus 150 ~~~~----~~A~ia~--~~G~~~eAe~~~-------------l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~ 202 (244)
..+. ..|.+.. .-|+..|+-++| .+.-.|.+++-+|..-+.||.|....-.|.
T Consensus 238 ~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 238 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 4221 1122222 112344444444 344566677888888888888888887775
No 70
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.15 E-value=0.053 Score=38.05 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=31.3
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
+...|++++|.+..... .....|..+|......++++.|...|.+.
T Consensus 19 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 69 (125)
T 1na0_A 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 46777777777766553 34566777777777777777777666553
No 71
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.14 E-value=0.032 Score=40.76 Aligned_cols=80 Identities=10% Similarity=-0.054 Sum_probs=57.4
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL 161 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~ 161 (244)
.+...|+|++|....... .....|..+|......++++.|..+|.+.-... ..........|.++..
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 18 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--------GQSVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHH
Confidence 458899999999887663 467899999999999999999988876532110 1111223567888888
Q ss_pred cCCHHHHHHHHHH
Q psy11525 162 GGNISEAESILLQ 174 (244)
Q Consensus 162 ~G~~~eAe~~~l~ 174 (244)
.|++++|...|.+
T Consensus 90 ~~~~~~A~~~~~~ 102 (137)
T 3q49_B 90 MESYDEAIANLQR 102 (137)
T ss_dssp TTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHH
Confidence 8888887776644
No 72
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.14 E-value=0.091 Score=42.43 Aligned_cols=108 Identities=13% Similarity=-0.010 Sum_probs=78.2
Q ss_pred HHHcCCHHHHHHHHhcc-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc----
Q psy11525 88 YAASHSWPQALSLCRTL-------------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV---- 150 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~---- 150 (244)
|...|++++|....... .....|..+|......++++.|..+|.+.- ...++.....+
T Consensus 53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~ 127 (283)
T 3edt_B 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-----EIREKVLGKFHPDVA 127 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----HHHHHHHCTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-----HHHHHHcCCCChHHH
Confidence 48899999998877653 124578899999999999999999998742 23333322221
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHCCC----------HHHH------HHHHHHhcCHHHHHHHHHh
Q psy11525 151 -KAAQQAEMYLLGGNISEAESILLQHGL----------IFRA------IQVSILTHNWDRALELALR 200 (244)
Q Consensus 151 -~~~~~A~ia~~~G~~~eAe~~~l~~g~----------~~~A------i~m~~~l~~W~~Al~LA~~ 200 (244)
....+|.++...|++++|...|.++-. +..+ -..|...++|++|++..++
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 224588999999999999999877632 2222 3567889999999877654
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.13 E-value=0.019 Score=52.72 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=38.4
Q ss_pred HHcCCH-HHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 89 AASHSW-PQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 89 l~~~~~-~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
...|++ ++|.+..+.. .....|..||......++++.|+.+|.+.
T Consensus 113 ~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 113 NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp TSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 677899 9999888764 45789999999999999999999998764
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.09 E-value=0.067 Score=42.90 Aligned_cols=105 Identities=11% Similarity=-0.004 Sum_probs=76.4
Q ss_pred HHHHcCCHHHHHHHHhcc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMY 159 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia 159 (244)
.++..|+|++|....... .....|..+|......++++.|..+|.+.- ++.. ........|.++
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---------~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI---------KKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HTTCSHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH---------HhCcchHHHHHHHHHHH
Confidence 358999999999987653 456788889999999999999988876532 1111 011235689999
Q ss_pred HHcCCHHHHHHHHHHC-----CCH----------HHHHHHHHHhcCHHHHHHHHHh
Q psy11525 160 LLGGNISEAESILLQH-----GLI----------FRAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 160 ~~~G~~~eAe~~~l~~-----g~~----------~~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
...|++++|.+.|.++ +.+ ...=..+..++++++|++.-++
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 9999999999998765 222 1123567788999999887765
No 75
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.07 E-value=0.18 Score=36.77 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=53.1
Q ss_pred HHHcCCHHHHHHHHhcc-------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHHH
Q psy11525 88 YAASHSWPQALSLCRTL-------ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKAA 153 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-------~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~~ 153 (244)
|...|++++|....+.. .. ...|..+|......++++.|...|.+.- .......... ....
T Consensus 19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~~ 93 (164)
T 3ro3_A 19 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL-----LLARQLKDRAVEAQSCY 93 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHhCCcHHHHHHHH
Confidence 47889999998887664 11 1378889999999999999988887642 2222221110 1123
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q psy11525 154 QQAEMYLLGGNISEAESILL 173 (244)
Q Consensus 154 ~~A~ia~~~G~~~eAe~~~l 173 (244)
..|.++...|++++|...|.
T Consensus 94 ~l~~~~~~~~~~~~A~~~~~ 113 (164)
T 3ro3_A 94 SLGNTYTLLQDYEKAIDYHL 113 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 46777777777777777663
No 76
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.04 E-value=0.043 Score=42.63 Aligned_cols=136 Identities=12% Similarity=0.111 Sum_probs=81.9
Q ss_pred HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc------HHHHHHH
Q psy11525 89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV------KAAQQAE 157 (244)
Q Consensus 89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~------~~~~~A~ 157 (244)
+..|++++|.+.++.+ .....|..+|......++++.|...|.+.- .......+ -....|.
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ--------QQAQKSGDHTAEHRALHQVGM 74 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHHHTTCCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH--------HHHHHcCCcHHHHHHHHHHHH
Confidence 5689999999943332 346788999999999999999998887632 21222222 1245788
Q ss_pred HHHHcCCHHHHHHHHHHC-------C-CH-HHH------HHHHHHhcCHHHHHHHHHh-------cCCc--hhHHHHHHH
Q psy11525 158 MYLLGGNISEAESILLQH-------G-LI-FRA------IQVSILTHNWDRALELALR-------HKTH--IDTVLYQRK 213 (244)
Q Consensus 158 ia~~~G~~~eAe~~~l~~-------g-~~-~~A------i~m~~~l~~W~~Al~LA~~-------~~~~--~~~vl~~r~ 213 (244)
++...|++++|...|.++ | .+ ..+ -.++..++++++|++..++ .+.. .-..+....
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 999999999998888764 3 32 111 3467778899888665543 2221 112222333
Q ss_pred HHHHHcCC-cccHHHHHhcc
Q psy11525 214 KYLDNLEK-IETNEKFLRLQ 232 (244)
Q Consensus 214 ~yl~~~~~-~e~~~~f~~~~ 232 (244)
..+...|+ .++...|+++.
T Consensus 155 ~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 155 DLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHH
Confidence 33344555 55666666553
No 77
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.02 E-value=0.094 Score=40.64 Aligned_cols=107 Identities=12% Similarity=0.074 Sum_probs=70.8
Q ss_pred HHHcCCHHHHHHHHhcc-C----------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC----cHH
Q psy11525 88 YAASHSWPQALSLCRTL-N----------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP----VKA 152 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-~----------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~----~~~ 152 (244)
+...|++++|....+.. . ....|..+|......++++.|...|.+.- ...+.....+ .-.
T Consensus 36 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~ 110 (203)
T 3gw4_A 36 YAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER-----ELLASLPEDPLAASANA 110 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHSCCCHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHcCccHHHHHHHH
Confidence 47789999888877653 1 24568889999999999999998887632 2222211111 012
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHC-------CCHH-------HHHHHHHHhcCHHHHHHHHH
Q psy11525 153 AQQAEMYLLGGNISEAESILLQH-------GLIF-------RAIQVSILTHNWDRALELAL 199 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eAe~~~l~~-------g~~~-------~Ai~m~~~l~~W~~Al~LA~ 199 (244)
...|.++...|++++|...|.++ +.+. ..-..+..+|+|++|++..+
T Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 111 YEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999888664 3332 12345667778877765443
No 78
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.98 E-value=0.043 Score=39.31 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=55.1
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL 161 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~ 161 (244)
.+...|+|++|....... .....|..+|......++++.|..+|.+.-.. -..........|.++..
T Consensus 25 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 25 ECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--------EPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHH
Confidence 358899999999888763 46788999999999999999888887653211 00111223456777777
Q ss_pred cCCHHHHHHHHHH
Q psy11525 162 GGNISEAESILLQ 174 (244)
Q Consensus 162 ~G~~~eAe~~~l~ 174 (244)
.|++++|.+.|.+
T Consensus 97 ~~~~~~A~~~~~~ 109 (133)
T 2lni_A 97 MKDYTKAMDVYQK 109 (133)
T ss_dssp TTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHH
Confidence 7777777766653
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.93 E-value=0.03 Score=54.91 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=77.2
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHHHH
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMYLL 161 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia~~ 161 (244)
|...|++++|....+.. +....|..||......++++.|+.+|.+.= ++.. ..+-...+|.++..
T Consensus 53 l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl---------~l~P~~~~a~~~Lg~~~~~ 123 (723)
T 4gyw_A 53 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI---------QINPAFADAHSNLASIHKD 123 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHHHHHHHHHHHH
Confidence 48899999999988764 568899999999999999999999997531 1111 12233568999999
Q ss_pred cCCHHHHHHHHHHC-----CCHH---HHHHHHHHhcCHHHHHHHHH
Q psy11525 162 GGNISEAESILLQH-----GLIF---RAIQVSILTHNWDRALELAL 199 (244)
Q Consensus 162 ~G~~~eAe~~~l~~-----g~~~---~Ai~m~~~l~~W~~Al~LA~ 199 (244)
+|++++|.+.|.++ +.++ .--.++..+++|++|.+.-+
T Consensus 124 ~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 99999999999875 2222 12456788899988876443
No 80
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.92 E-value=0.21 Score=42.75 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=56.1
Q ss_pred HHHHcCCHHHHHHHHhcc----C-C----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL----N-D----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKAAQ 154 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~----~-~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~~~ 154 (244)
.+...|++++|....+.. . . ...|..+|......++++.|..+|.+.- ...+.+...+ .....
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-----TLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----HHHHhccccHHHHHHHHH
Confidence 358899999999988764 2 2 3578899999999999999998887632 1112111110 11234
Q ss_pred HHHHHHHcCCHHHHHHHHHHC
Q psy11525 155 QAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 155 ~A~ia~~~G~~~eAe~~~l~~ 175 (244)
.|.++...|++++|...|.++
T Consensus 93 la~~~~~~g~~~~A~~~~~~a 113 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRH 113 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 677777777777777766544
No 81
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.89 E-value=0.049 Score=47.42 Aligned_cols=133 Identities=8% Similarity=-0.010 Sum_probs=83.2
Q ss_pred HHHHHHHHhcc-------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC---CcHHHHHHHHH
Q psy11525 94 WPQALSLCRTL-------N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI---PVKAAQQAEMY 159 (244)
Q Consensus 94 ~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~---~~~~~~~A~ia 159 (244)
+++|.+..+.. . ....|..+|......++++.|..+|.+.-. ........ ......+|.++
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR-----IAREFGDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----HHHhcCCcHHHHHHHHHHHHHH
Confidence 88887766553 1 234888999999999999999999876422 12221110 01235678999
Q ss_pred HHcCCHHHHHHHHHHCCCHH--------------HHHHHHHHhcCHHHHHHHHHh-------cCCc--hhHHHHHHHHHH
Q psy11525 160 LLGGNISEAESILLQHGLIF--------------RAIQVSILTHNWDRALELALR-------HKTH--IDTVLYQRKKYL 216 (244)
Q Consensus 160 ~~~G~~~eAe~~~l~~g~~~--------------~Ai~m~~~l~~W~~Al~LA~~-------~~~~--~~~vl~~r~~yl 216 (244)
...|++++|...|.++-... ..-.+|...+++++|++..++ .+.. ....+......+
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 99999999998887652221 123467788888888766554 2211 223444445555
Q ss_pred HHcCC-cccHHHHHhc
Q psy11525 217 DNLEK-IETNEKFLRL 231 (244)
Q Consensus 217 ~~~~~-~e~~~~f~~~ 231 (244)
...|+ .++.+.|+++
T Consensus 354 ~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 354 SAIGGHERALKYAEQH 369 (411)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 66666 4666666665
No 82
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.83 E-value=0.15 Score=42.01 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=58.1
Q ss_pred HHHHcCCHHHHHHHHhcc-----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL-----ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKAAQ 154 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~~~ 154 (244)
.+...|++++|....+.. .+ ...|..+|......++++.|...|.+.-+ ..+.....+ .....
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT-----LARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHHTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HhhcccccHHHHHHHHH
Confidence 358899999999988774 22 36788999999999999999988876322 122221111 11245
Q ss_pred HHHHHHHcCCHHHHHHHHHHC
Q psy11525 155 QAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 155 ~A~ia~~~G~~~eAe~~~l~~ 175 (244)
.|.++...|++++|...|.++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~a 109 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRH 109 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 678888888888888877664
No 83
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.83 E-value=0.036 Score=44.94 Aligned_cols=100 Identities=17% Similarity=0.064 Sum_probs=64.9
Q ss_pred CCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHH
Q psy11525 92 HSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNIS 166 (244)
Q Consensus 92 ~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~ 166 (244)
|++++|....+.. .....|..+|......++++.|+.+|.+.-.. ...++.....|.++...|+++
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~~~~~~~~~la~~~~~~g~~~ 168 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL---------EDTPEIRSALAELYLSMGRLD 168 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHTCHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------ccchHHHHHHHHHHHHcCCHH
Confidence 9999999888764 46789999999999999999999999864211 122223356899999999999
Q ss_pred HHHHHHHHC-----CCHHH---HHHHHHHhcCHHHHHHHHHh
Q psy11525 167 EAESILLQH-----GLIFR---AIQVSILTHNWDRALELALR 200 (244)
Q Consensus 167 eAe~~~l~~-----g~~~~---Ai~m~~~l~~W~~Al~LA~~ 200 (244)
+|...|.++ +.+.. --.++..+|++++|++..++
T Consensus 169 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999875 22221 13456777888888876654
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.82 E-value=0.17 Score=44.66 Aligned_cols=106 Identities=8% Similarity=-0.007 Sum_probs=71.9
Q ss_pred HHHcCCHHHHHHHHhcc-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhH--HHHHHHhhCCCcHHHHH--H
Q psy11525 88 YAASHSWPQALSLCRTL-------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDK--VMYINHIKGIPVKAAQQ--A 156 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~--v~~l~~i~~~~~~~~~~--A 156 (244)
+...|++++|++.+..+ .+-.....++...+..++++.|++.+.++.+.+- ++.= .+..... |
T Consensus 110 ~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~------d~~l~~Laea 183 (310)
T 3mv2_B 110 QAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD------NEMILNLAES 183 (310)
T ss_dssp HHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH------HHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc------hHHHHHHHHH
Confidence 35679999999999987 6778889999999999999999988876432221 0000 0111222 4
Q ss_pred HHHHHcC--CHHHHHHHHHHC----CC---HHHHHHHHHHhcCHHHHHHHHH
Q psy11525 157 EMYLLGG--NISEAESILLQH----GL---IFRAIQVSILTHNWDRALELAL 199 (244)
Q Consensus 157 ~ia~~~G--~~~eAe~~~l~~----g~---~~~Ai~m~~~l~~W~~Al~LA~ 199 (244)
-+.+..| ++++|..+|-+. +. +...+..+..+|+|++|.+..+
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456666 788886666543 33 3455668889999999987754
No 85
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.77 E-value=0.047 Score=37.70 Aligned_cols=81 Identities=14% Similarity=0.109 Sum_probs=53.4
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC--CCcHHHHHHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG--IPVKAAQQAEMY 159 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~--~~~~~~~~A~ia 159 (244)
-+...|++++|....+.. .....|..+|......++++.|..+|.+.-.. -.. ........|.++
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 15 LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------IEDEYNKDVWAAKADAL 86 (112)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------SCCTTCHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccchHHHHHHHHHHH
Confidence 357788888888877653 45678888888888888888888877653211 001 111224567777
Q ss_pred HHc-CCHHHHHHHHHHC
Q psy11525 160 LLG-GNISEAESILLQH 175 (244)
Q Consensus 160 ~~~-G~~~eAe~~~l~~ 175 (244)
... |++++|.+.|.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARA 103 (112)
T ss_dssp TTCSSCSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 777 7777777776553
No 86
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.75 E-value=0.24 Score=42.94 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=56.9
Q ss_pred HHHcCCHHHHHHHHhcc-----CCH----HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHHHHH
Q psy11525 88 YAASHSWPQALSLCRTL-----NDD----ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKAAQQ 155 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~----~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~~~~ 155 (244)
+...|++++|....+.. .+. ..|..+|......++++.|..+|.+.- ...+.+...+ .....+
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL-----TLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHccCchHHHHHHHHH
Confidence 58999999999988774 222 579999999999999999999887632 1222221110 112346
Q ss_pred HHHHHHcCCHHHHHHHHHHC
Q psy11525 156 AEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 156 A~ia~~~G~~~eAe~~~l~~ 175 (244)
|.++...|++++|...|.++
T Consensus 133 ~~~~~~~g~~~~A~~~~~~a 152 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERH 152 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 77777777777777776654
No 87
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.70 E-value=0.11 Score=37.23 Aligned_cols=80 Identities=13% Similarity=0.035 Sum_probs=52.5
Q ss_pred HHHHHcCCHHHHHHHHhcc-----CCH---HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC---CcHHHH
Q psy11525 86 HSYAASHSWPQALSLCRTL-----NDD---ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI---PVKAAQ 154 (244)
Q Consensus 86 ~~~l~~~~~~~A~~~~~~~-----~~~---~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~---~~~~~~ 154 (244)
..++..|+|++|....... .+. ..|..+|......++++.|..+|.+.-+ .--.. ++....
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~--------~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS--------RYPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTSTTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--------HCCCCcccHHHHHH
Confidence 3467889999998877764 223 5888888888888888888888775321 11111 111244
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q psy11525 155 QAEMYLLGGNISEAESILL 173 (244)
Q Consensus 155 ~A~ia~~~G~~~eAe~~~l 173 (244)
.|.++...|++++|...|.
T Consensus 82 la~~~~~~g~~~~A~~~~~ 100 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQ 100 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 6777777777777766664
No 88
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.66 E-value=0.13 Score=36.27 Aligned_cols=83 Identities=11% Similarity=0.017 Sum_probs=56.5
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC----CcHHHHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI----PVKAAQQAE 157 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~----~~~~~~~A~ 157 (244)
.+...|+|++|....... .....|..+|......++++.|..+|.+.-+.. ...... .......|.
T Consensus 13 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 13 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-----RENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHSTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-----cccchhHHHHHHHHHHHHH
Confidence 458899999999988764 467889999999999999999998887643211 000000 112234666
Q ss_pred HHHHcCCHHHHHHHHHH
Q psy11525 158 MYLLGGNISEAESILLQ 174 (244)
Q Consensus 158 ia~~~G~~~eAe~~~l~ 174 (244)
++...|++++|.+.|.+
T Consensus 88 ~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHH
Confidence 77777777777666543
No 89
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.64 E-value=0.25 Score=42.96 Aligned_cols=136 Identities=10% Similarity=-0.006 Sum_probs=81.3
Q ss_pred HHHcCCHHHHHHHHhcc-------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc------
Q psy11525 88 YAASHSWPQALSLCRTL-------N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV------ 150 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~------ 150 (244)
+...|++++|....+.. . ....|..+|......++++.|...|.+. ++-..+..+
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a--------l~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA--------YEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------HHHHHTCSTTHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHHHHhCccchHHHH
Confidence 37889999999887763 1 2367889999999999999988887652 222222222
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHCCCH-------H-------HHHHHHHHhcCHHHHHHHHHh-------cC--Cchh
Q psy11525 151 -KAAQQAEMYLLGGNISEAESILLQHGLI-------F-------RAIQVSILTHNWDRALELALR-------HK--THID 206 (244)
Q Consensus 151 -~~~~~A~ia~~~G~~~eAe~~~l~~g~~-------~-------~Ai~m~~~l~~W~~Al~LA~~-------~~--~~~~ 206 (244)
.....|.++...|++++|...|.++=.. . .-=.+|..++++++|++..++ .+ +..-
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 1234678888888888888877664211 1 112345667777766554332 22 2222
Q ss_pred HHHHHHHHHHHHcCC-cccHHHHHhc
Q psy11525 207 TVLYQRKKYLDNLEK-IETNEKFLRL 231 (244)
Q Consensus 207 ~vl~~r~~yl~~~~~-~e~~~~f~~~ 231 (244)
..+.....-+...|+ .++.+.|.++
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333333333344444 5566666555
No 90
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.63 E-value=0.17 Score=40.99 Aligned_cols=102 Identities=9% Similarity=-0.099 Sum_probs=72.3
Q ss_pred cCCHHHHHHHHhcc-C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525 91 SHSWPQALSLCRTL-N--------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL 161 (244)
Q Consensus 91 ~~~~~~A~~~~~~~-~--------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~ 161 (244)
.|++++|....+.. . ....|..+|......++++.|..+|.+.-.. -..........|.++..
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHH
Confidence 46777777766653 2 3578999999999999999999998763211 01111233568999999
Q ss_pred cCCHHHHHHHHHHCC-----CHH---HHHHHHHHhcCHHHHHHHHHh
Q psy11525 162 GGNISEAESILLQHG-----LIF---RAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 162 ~G~~~eAe~~~l~~g-----~~~---~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
.|++++|.+.|.++= .+. .--.+|..++++++|++..++
T Consensus 90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 136 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999998652 111 124678889999999887655
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.58 E-value=0.084 Score=43.42 Aligned_cols=139 Identities=12% Similarity=0.050 Sum_probs=92.6
Q ss_pred HHHHHcCCHHHHHHHHhcc-----CC---HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHHHH
Q psy11525 86 HSYAASHSWPQALSLCRTL-----ND---DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKAAQ 154 (244)
Q Consensus 86 ~~~l~~~~~~~A~~~~~~~-----~~---~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~~~ 154 (244)
..++..|+|++|....+.. .+ ...|..+|......++++.|...|.+.-. .--..+ +....
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--------~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--------IYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCTTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--------HCCCCchhHHHHHH
Confidence 3468999999999998875 23 78899999999999999999998876421 110011 12245
Q ss_pred HHHHHHH--------cCCHHHHHHHHHHC-------CCHHHH------------------HHHHHHhcCHHHHHHHHHhc
Q psy11525 155 QAEMYLL--------GGNISEAESILLQH-------GLIFRA------------------IQVSILTHNWDRALELALRH 201 (244)
Q Consensus 155 ~A~ia~~--------~G~~~eAe~~~l~~-------g~~~~A------------------i~m~~~l~~W~~Al~LA~~~ 201 (244)
.|.+... .|++++|...|.+. .....| -.+|...++|++|+..-++.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6888888 99999999998764 122222 45688899999998876542
Q ss_pred ---CCc---hhHHHHHHHHHHHHcCCcc----cHHHHHhcc
Q psy11525 202 ---KTH---IDTVLYQRKKYLDNLEKIE----TNEKFLRLQ 232 (244)
Q Consensus 202 ---~~~---~~~vl~~r~~yl~~~~~~e----~~~~f~~~~ 232 (244)
.+. ....+.....-+...|... ....|.++.
T Consensus 175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~ 215 (261)
T 3qky_A 175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAV 215 (261)
T ss_dssp HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHH
Confidence 222 3445555555445554433 235666554
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.56 E-value=0.1 Score=36.75 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=55.7
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG 162 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~ 162 (244)
+...|++++|....+.. .....|..+|......++++.|...|.+.-.. ...........|.++...
T Consensus 45 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~ 116 (136)
T 2fo7_A 45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQ 116 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHH
Confidence 57889999999988764 45778999999999999999998888653211 111111224567777777
Q ss_pred CCHHHHHHHHHH
Q psy11525 163 GNISEAESILLQ 174 (244)
Q Consensus 163 G~~~eAe~~~l~ 174 (244)
|++++|...|.+
T Consensus 117 ~~~~~A~~~~~~ 128 (136)
T 2fo7_A 117 GDYDEAIEYYQK 128 (136)
T ss_dssp TCHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 777777777654
No 93
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=95.53 E-value=0.032 Score=51.25 Aligned_cols=105 Identities=13% Similarity=-0.071 Sum_probs=69.7
Q ss_pred HHHcCCHHHHHHHHhcc----CCHHHHHHHHHHHHHc---------CCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHH
Q psy11525 88 YAASHSWPQALSLCRTL----NDDILWACLAGMATYS---------RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQ 154 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~----~~~~lW~~LA~~Al~~---------~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~ 154 (244)
|...|++++|.+..+.. +....|..+|...... ++++.|+.+|.+.=.. --........
T Consensus 147 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~ 218 (474)
T 4abn_A 147 YWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYI 218 (474)
T ss_dssp HHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence 48899999999988764 4578999999999888 8899888888763211 0011112245
Q ss_pred HHHHHHHc--------CCHHHHHHHHHHCCC--H------H---HHHHHHHHhcCHHHHHHHHHh
Q psy11525 155 QAEMYLLG--------GNISEAESILLQHGL--I------F---RAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 155 ~A~ia~~~--------G~~~eAe~~~l~~g~--~------~---~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
.|.++... |++++|...|.++-. | . ..-..|..++++++|++..++
T Consensus 219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66677666 778888877766522 1 1 123456677788877665443
No 94
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.51 E-value=0.1 Score=46.93 Aligned_cols=135 Identities=13% Similarity=0.015 Sum_probs=89.4
Q ss_pred HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCC-HHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525 89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRD-LATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG 162 (244)
Q Consensus 89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~-l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~ 162 (244)
...|++++|....+.. .....|..+|......++ ++.|..+|.+.= +.--+...-...+|.++..+
T Consensus 108 ~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al--------~l~P~~~~a~~~~g~~~~~~ 179 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII--------EEQPKNYQVWHHRRVLVEWL 179 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--------HHCTTCHHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHHc
Confidence 7789999999988774 578999999999999996 999998887531 11001111234578888888
Q ss_pred CCHHHHHHHHHHCC-----CH---HHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHH-cCC-ccc-----
Q psy11525 163 GNISEAESILLQHG-----LI---FRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDN-LEK-IET----- 224 (244)
Q Consensus 163 G~~~eAe~~~l~~g-----~~---~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~-~~~-~e~----- 224 (244)
|++++|...|.++= .+ ..--.++..+++|++|++..++ .++.-......|..-+.. .|. .++
T Consensus 180 g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 180 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 99999988887651 11 1112356678888888765544 344444555566665655 565 444
Q ss_pred HHHHHhc
Q psy11525 225 NEKFLRL 231 (244)
Q Consensus 225 ~~~f~~~ 231 (244)
.+.|+++
T Consensus 260 l~~~~~A 266 (382)
T 2h6f_A 260 VQYTLEM 266 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 2555554
No 95
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.51 E-value=0.1 Score=38.12 Aligned_cols=81 Identities=12% Similarity=0.010 Sum_probs=55.4
Q ss_pred HHHHHcCCHHHHHHHHhcc----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHH
Q psy11525 86 HSYAASHSWPQALSLCRTL----ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAE 157 (244)
Q Consensus 86 ~~~l~~~~~~~A~~~~~~~----~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ 157 (244)
..+...|+|++|.+..+.. .. ...|..+|......++++.|..+|.+.-.. -..........|.
T Consensus 36 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~ 107 (148)
T 2dba_A 36 NELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--------DGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TSCCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------CccCHHHHHHHHH
Confidence 3458899999999887764 23 678999999999999999888888653211 0111112345677
Q ss_pred HHHHcCCHHHHHHHHHH
Q psy11525 158 MYLLGGNISEAESILLQ 174 (244)
Q Consensus 158 ia~~~G~~~eAe~~~l~ 174 (244)
++...|++++|.+.|.+
T Consensus 108 ~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 77777777777776643
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.47 E-value=0.52 Score=39.73 Aligned_cols=112 Identities=8% Similarity=-0.016 Sum_probs=71.3
Q ss_pred HHHHHHHcCCHHHHHHHHhcc-------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC---C
Q psy11525 84 VLHSYAASHSWPQALSLCRTL-------N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI---P 149 (244)
Q Consensus 84 ~l~~~l~~~~~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~---~ 149 (244)
+..-|...|+|++|....... . ....|..+|......++++-|..+|.+.-.. ..+.... .
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~~~~g~~~~~a 117 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI-----FTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----HHHcCCHHHHH
Confidence 334467899999998776542 1 1467889999999999999999888753211 1111000 0
Q ss_pred cHHHHHHHHHHHc-CCHHHHHHHHHHCCCHH-------H-------HHHHHHHhcCHHHHHHHHHh
Q psy11525 150 VKAAQQAEMYLLG-GNISEAESILLQHGLIF-------R-------AIQVSILTHNWDRALELALR 200 (244)
Q Consensus 150 ~~~~~~A~ia~~~-G~~~eAe~~~l~~g~~~-------~-------Ai~m~~~l~~W~~Al~LA~~ 200 (244)
......|.++... |++++|...|.++-... . .-..+..++++++|++.-++
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1123467777775 88888888776653321 1 13566777888888776554
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.39 E-value=0.073 Score=42.73 Aligned_cols=82 Identities=16% Similarity=0.053 Sum_probs=60.4
Q ss_pred HHHHHcCCHHHHHHHHhcc-----CCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHhCChhHHHHHHH
Q psy11525 86 HSYAASHSWPQALSLCRTL-----NDDILWAC----------------LAGMATYSRDLATSEEAYAAIEQVDKVMYINH 144 (244)
Q Consensus 86 ~~~l~~~~~~~A~~~~~~~-----~~~~lW~~----------------LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~ 144 (244)
..++..|+|++|....+.. .....|.. +|......++++.|..+|.+.= +.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~ 83 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL--------QK 83 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------HH
Confidence 3468999999999988774 23556777 8888888999998888886521 11
Q ss_pred hhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525 145 IKGIPVKAAQQAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 145 i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~ 175 (244)
--+..+.....|.++...|++++|...|.++
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0111123356899999999999999999875
No 98
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.22 E-value=0.25 Score=40.61 Aligned_cols=134 Identities=10% Similarity=0.023 Sum_probs=81.7
Q ss_pred HHHHHHHHhcc-------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC---CcHHHHHHHHH
Q psy11525 94 WPQALSLCRTL-------ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI---PVKAAQQAEMY 159 (244)
Q Consensus 94 ~~~A~~~~~~~-------~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~---~~~~~~~A~ia 159 (244)
+++|.+..... .. ...|..+|......++++.|..+|.+.-+ ........ .......|.++
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL-----IAKEFGDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----HHHhcCChHHHHHHHHHHHHHH
Confidence 77776655442 22 34788899999999999999988876322 12221110 01235678899
Q ss_pred HHcCCHHHHHHHHHHCC-------CHH-------HHHHHHHHhcCHHHHHHHHHh-------cCCc--hhHHHHHHHHHH
Q psy11525 160 LLGGNISEAESILLQHG-------LIF-------RAIQVSILTHNWDRALELALR-------HKTH--IDTVLYQRKKYL 216 (244)
Q Consensus 160 ~~~G~~~eAe~~~l~~g-------~~~-------~Ai~m~~~l~~W~~Al~LA~~-------~~~~--~~~vl~~r~~yl 216 (244)
...|++++|...|.++- ... ..-.++...+++++|++..++ .+.. ...++......+
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 99999999998887642 211 123567788999988776544 2211 222344445555
Q ss_pred HHcCC-cccHHHHHhcc
Q psy11525 217 DNLEK-IETNEKFLRLQ 232 (244)
Q Consensus 217 ~~~~~-~e~~~~f~~~~ 232 (244)
...|+ .++...|+++.
T Consensus 314 ~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 314 TALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHH
Confidence 55555 56666666653
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.18 E-value=0.2 Score=46.52 Aligned_cols=133 Identities=16% Similarity=0.016 Sum_probs=79.0
Q ss_pred cCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCH
Q psy11525 91 SHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNI 165 (244)
Q Consensus 91 ~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~ 165 (244)
.|++++|.+..+.. .....|..+|......++++.|+.+|.+.-..+- ...+.....|.++...|++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--------GHPEAVARLGRVRWTQQRH 73 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST--------TCHHHHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCH
Confidence 46777787777664 4578899999999999999999998876432210 1112235678999999999
Q ss_pred HHHHHHHHHC-----CCHH---HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHc---CC-cccHHHHHh
Q psy11525 166 SEAESILLQH-----GLIF---RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNL---EK-IETNEKFLR 230 (244)
Q Consensus 166 ~eAe~~~l~~-----g~~~---~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~---~~-~e~~~~f~~ 230 (244)
++|.+.|.++ +.+. ..-.+|..++++++|++..++ .++.-...+......+... |+ .++.+.|++
T Consensus 74 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 74 AEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 9999998875 2222 123568889999999877655 3444334444445555555 55 455566665
Q ss_pred c
Q psy11525 231 L 231 (244)
Q Consensus 231 ~ 231 (244)
+
T Consensus 154 a 154 (568)
T 2vsy_A 154 A 154 (568)
T ss_dssp H
T ss_pred H
Confidence 5
No 100
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.12 E-value=0.034 Score=51.41 Aligned_cols=104 Identities=9% Similarity=-0.042 Sum_probs=71.5
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG 162 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~ 162 (244)
+...|+|++|.+..+.. .....|..+|......++++.|+.+|.+.-.. --.........|.++..+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc
Confidence 35689999999888764 56899999999999999999999988763211 001112235679999999
Q ss_pred CCHHHHHHHHHHC-----CCHH--HH---HHHHHHhcCHHHHHHHHH
Q psy11525 163 GNISEAESILLQH-----GLIF--RA---IQVSILTHNWDRALELAL 199 (244)
Q Consensus 163 G~~~eAe~~~l~~-----g~~~--~A---i~m~~~l~~W~~Al~LA~ 199 (244)
|++++|.+.|.++ +... .. +..+...++|++|+++.+
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999875 1111 11 122667799999998877
No 101
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.10 E-value=0.54 Score=32.90 Aligned_cols=79 Identities=13% Similarity=0.020 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHH
Q psy11525 105 NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQV 184 (244)
Q Consensus 105 ~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m 184 (244)
.....|..+|......++++.|+.+|.+.= +.--........+|.++...|++++|.+.|.+ |+++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~------al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELV--------ETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ------GIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH------HHhh
Confidence 356789999999999999999999887642 11111223345678888889999888887754 4555
Q ss_pred HHHhcCHHHHHHH
Q psy11525 185 SILTHNWDRALEL 197 (244)
Q Consensus 185 ~~~l~~W~~Al~L 197 (244)
..+.++...+.++
T Consensus 71 ~~~~~~~~~~~~l 83 (100)
T 3ma5_A 71 AREEGTQKDLSEL 83 (100)
T ss_dssp HHHHSCHHHHHHH
T ss_pred hhcCCchhHHHHH
Confidence 5444444444433
No 102
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.08 E-value=0.21 Score=39.19 Aligned_cols=80 Identities=11% Similarity=0.002 Sum_probs=61.5
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC-------------
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP------------- 149 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~------------- 149 (244)
|...|++++|....... .....|..+|......++++.|..+|.+.-. ......
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~~~ 118 (213)
T 1hh8_A 47 YTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI--------QLRGNQLIDYKILGLQFKL 118 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------TTTTCSEEECGGGTBCCEE
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHH--------hCCCccHHHHHHhccccCc
Confidence 58899999999988764 5678999999999999999999999876421 111111
Q ss_pred ---cHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525 150 ---VKAAQQAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 150 ---~~~~~~A~ia~~~G~~~eAe~~~l~~ 175 (244)
......|.++...|++++|...|.++
T Consensus 119 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 119 FACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp EHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 22356788999999999999988764
No 103
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.08 E-value=0.076 Score=40.83 Aligned_cols=101 Identities=17% Similarity=0.165 Sum_probs=46.2
Q ss_pred HcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHH-HHHcC
Q psy11525 90 ASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEM-YLLGG 163 (244)
Q Consensus 90 ~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~i-a~~~G 163 (244)
..|++++|...++.. .....|..+|......++++.|..+|.+.-.. --.........|.+ +...|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--------RGENAELYAALATVLYYQAS 93 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCSCHHHHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcC
Confidence 344455554444332 34566666666666666666666666542110 00111112334555 44556
Q ss_pred CH--HHHHHHHHHC-----CCHH---HHHHHHHHhcCHHHHHHHH
Q psy11525 164 NI--SEAESILLQH-----GLIF---RAIQVSILTHNWDRALELA 198 (244)
Q Consensus 164 ~~--~eAe~~~l~~-----g~~~---~Ai~m~~~l~~W~~Al~LA 198 (244)
++ ++|...|.++ +.+. ..-.+|..++++++|+...
T Consensus 94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 138 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHH
Confidence 65 6666665543 1111 1123455566666665544
No 104
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.06 E-value=0.16 Score=42.94 Aligned_cols=81 Identities=10% Similarity=-0.057 Sum_probs=62.9
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL 161 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~ 161 (244)
.+...|+|++|....... .....|..+|......++++.|+..|.+.-...- .........|.++..
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG--------QSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--------TCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHH
Confidence 458899999999988764 5789999999999999999999988876433210 001123567999999
Q ss_pred cCCHHHHHHHHHHC
Q psy11525 162 GGNISEAESILLQH 175 (244)
Q Consensus 162 ~G~~~eAe~~~l~~ 175 (244)
.|++++|...|.++
T Consensus 85 ~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 85 MESYDEAIANLQRA 98 (281)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999999765
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.03 E-value=0.1 Score=40.47 Aligned_cols=108 Identities=9% Similarity=-0.131 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHcCCHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-CcHHHHHH
Q psy11525 80 PYISVLHSYAASHSWPQALSLCRTL--NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQQA 156 (244)
Q Consensus 80 p~~~~l~~~l~~~~~~~A~~~~~~~--~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~~~~~~A 156 (244)
-....+.+++..|.. ++-+-.+ ++...|..+|....+.++++.|+.+|.+.= .+... .+-....|
T Consensus 10 ~~~~~l~~~~~~~~~---l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---------~~~P~~~~~~~~lg 77 (151)
T 3gyz_A 10 SISTAVIDAINSGAT---LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC---------IYDFYNVDYIMGLA 77 (151)
T ss_dssp HHHHHHHHHHHTSCC---TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHHHHHHH
Confidence 345677777776642 1111122 245689999999999999999999998632 11111 12235678
Q ss_pred HHHHHcCCHHHHHHHHHHC-----CCHHH---HHHHHHHhcCHHHHHHHHH
Q psy11525 157 EMYLLGGNISEAESILLQH-----GLIFR---AIQVSILTHNWDRALELAL 199 (244)
Q Consensus 157 ~ia~~~G~~~eAe~~~l~~-----g~~~~---Ai~m~~~l~~W~~Al~LA~ 199 (244)
.++...|++++|...|.++ +.+.. -=..|..+|++++|++.-+
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999776 22221 1346778888888876543
No 106
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=94.97 E-value=0.41 Score=41.59 Aligned_cols=140 Identities=11% Similarity=0.012 Sum_probs=89.2
Q ss_pred HHHcCCHHHHHHHHhcc-------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC--CcHHHH
Q psy11525 88 YAASHSWPQALSLCRTL-------ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI--PVKAAQ 154 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-------~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~--~~~~~~ 154 (244)
|...|++++|....... .. ...+..||......++++.|..+|.+.-+ ..+..... ......
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK-----VSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HHHHHCGGGHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HHHhhCChhHHHHHHH
Confidence 47889988888766542 22 24677788888889999999888876422 12222111 112345
Q ss_pred HHHHHHHcCCHHHHHHHHHHCCC---------HHH----HHHHHHHhcC---HHHHHHHHHhcCCc--hhHHHHHHHHHH
Q psy11525 155 QAEMYLLGGNISEAESILLQHGL---------IFR----AIQVSILTHN---WDRALELALRHKTH--IDTVLYQRKKYL 216 (244)
Q Consensus 155 ~A~ia~~~G~~~eAe~~~l~~g~---------~~~----Ai~m~~~l~~---W~~Al~LA~~~~~~--~~~vl~~r~~yl 216 (244)
.|.++...|++++|...|.++=. ... .-.+|...++ .++|+...++.+.. +..+...-..++
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 78999999999999999876411 111 1234445556 88888888886633 445555555566
Q ss_pred HHcCC-cccHHHHHhcc
Q psy11525 217 DNLEK-IETNEKFLRLQ 232 (244)
Q Consensus 217 ~~~~~-~e~~~~f~~~~ 232 (244)
...|+ .++.+.|+++.
T Consensus 347 ~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666 56666666663
No 107
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.95 E-value=0.17 Score=37.44 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-CcHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525 108 ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQQAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 108 ~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~~~~~~A~ia~~~G~~~eAe~~~l~~ 175 (244)
..|..||..+.+.++++.|..+|.+.= ++... ......+|.++..+|++++|.+.|.++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al---------~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAI---------ELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 468899999999999999999997631 11111 112345788999999999998877654
No 108
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=94.84 E-value=0.16 Score=43.53 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=70.8
Q ss_pred HHHcCCHHHHHHHHhcc-------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC---CcHHH
Q psy11525 88 YAASHSWPQALSLCRTL-------ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI---PVKAA 153 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-------~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~---~~~~~ 153 (244)
|...|++++|....+.. .. ...|..+|......++++.|...|.+.- ......... .....
T Consensus 197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~ 271 (406)
T 3sf4_A 197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL-----LLARQLKDRAVEAQSCY 271 (406)
T ss_dssp HHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-----HHHHhCcCchHHHHHHH
Confidence 47789999888877653 11 2378888999999999998888887532 111111110 11224
Q ss_pred HHHHHHHHcCCHHHHHHHHHHCCCH--------------HHHHHHHHHhcCHHHHHHHHHh
Q psy11525 154 QQAEMYLLGGNISEAESILLQHGLI--------------FRAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 154 ~~A~ia~~~G~~~eAe~~~l~~g~~--------------~~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
..|.++...|++++|...|.++-.. ...-..|..+|++++|++..++
T Consensus 272 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 272 SLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5789999999999999888765221 1123466778888888765544
No 109
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=94.81 E-value=0.43 Score=37.95 Aligned_cols=80 Identities=16% Similarity=0.079 Sum_probs=55.8
Q ss_pred HHHcCCHHHHHHHHhcc----CC--------H-----HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc
Q psy11525 88 YAASHSWPQALSLCRTL----ND--------D-----ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV 150 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~----~~--------~-----~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~ 150 (244)
+...|+|++|....+.. ++ . ..|..+|.....-++++.|..||.+. +....+.-++..
T Consensus 21 l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA-----L~l~n~~~e~~p 95 (159)
T 2hr2_A 21 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA-----LHYFNRRGELNQ 95 (159)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHCCTTS
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHhhhccccCCC
Confidence 47899999999888763 22 2 29999999999999999999999863 222333333322
Q ss_pred -H---H----HHHHHHHHHcCCHHHHHHHH
Q psy11525 151 -K---A----AQQAEMYLLGGNISEAESIL 172 (244)
Q Consensus 151 -~---~----~~~A~ia~~~G~~~eAe~~~ 172 (244)
. . -+.|..+..+|+++||...|
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y 125 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEF 125 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence 1 2 35677777777777766655
No 110
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.81 E-value=0.42 Score=35.17 Aligned_cols=46 Identities=7% Similarity=-0.009 Sum_probs=39.4
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
+...|+|++|...-... .....|..+|......++++-|..+|.+.
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 58899999999887663 56789999999999999999999888753
No 111
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=94.77 E-value=0.64 Score=35.19 Aligned_cols=106 Identities=8% Similarity=-0.135 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-CcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCHH
Q psy11525 106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQQAEMYLLGGNISEAESILLQH-----GLIF 179 (244)
Q Consensus 106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~ 179 (244)
+...|..+|......++++.|+.+|.+.- .+... .......|.++...|++++|...|.++ +.+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al---------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 90 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALC---------VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHH---------HcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 34578889999999999999999987531 11111 112346789999999999999999875 2222
Q ss_pred H---HHHHHHHhcCHHHHHHHHHh---cC---CchhHHHHHHHHHHHHcC
Q psy11525 180 R---AIQVSILTHNWDRALELALR---HK---THIDTVLYQRKKYLDNLE 220 (244)
Q Consensus 180 ~---Ai~m~~~l~~W~~Al~LA~~---~~---~~~~~vl~~r~~yl~~~~ 220 (244)
. .-..|..+|++++|++..++ .+ +....+......+++...
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~ 140 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK 140 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHH
Confidence 2 23467889999998776544 22 223444445555555543
No 112
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=94.76 E-value=0.34 Score=33.64 Aligned_cols=86 Identities=14% Similarity=0.064 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCHH--
Q psy11525 107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH-----GLIF-- 179 (244)
Q Consensus 107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~-- 179 (244)
...|..+|......++++.|...|.+.-.. -..........|.++...|++++|...|.++ +.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH
Confidence 467889999999999999999988764211 0111122346788999999999999988764 2221
Q ss_pred -HHHHHHHHhcCHHHHHHHHHh
Q psy11525 180 -RAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 180 -~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
..-.++..++++++|++..++
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHH
Confidence 224567788889888876554
No 113
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=94.70 E-value=0.18 Score=38.21 Aligned_cols=79 Identities=16% Similarity=0.123 Sum_probs=52.6
Q ss_pred HHHHcCCHHHHHHHHhccC-----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHH
Q psy11525 87 SYAASHSWPQALSLCRTLN-----------------------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYIN 143 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~~-----------------------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~ 143 (244)
.+...|+|++|........ ....|..+|...+..++++.|..+|.+.= +
T Consensus 20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al--------~ 91 (162)
T 3rkv_A 20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL--------K 91 (162)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------H
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH--------h
Confidence 4588999999988665531 12678888888777788777777666421 1
Q ss_pred HhhCC-CcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525 144 HIKGI-PVKAAQQAEMYLLGGNISEAESILLQ 174 (244)
Q Consensus 144 ~i~~~-~~~~~~~A~ia~~~G~~~eAe~~~l~ 174 (244)
+... .....+.|.++...|++++|...|.+
T Consensus 92 -~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 92 -REETNEKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp -HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -cCCcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 1111 12235678888888888888877754
No 114
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=94.67 E-value=0.49 Score=35.12 Aligned_cols=104 Identities=8% Similarity=-0.107 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-CcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCHH-
Q psy11525 107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQQAEMYLLGGNISEAESILLQH-----GLIF- 179 (244)
Q Consensus 107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~- 179 (244)
...|..+|......++++.|+..|.+.- .+... .......|.++...|++++|...|.++ +.+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al---------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 88 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALC---------MLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHH---------HhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence 3567788999999999999999887521 11111 112356789999999999999999874 2221
Q ss_pred --HHHHHHHHhcCHHHHHHHHHh---cC---CchhHHHHHHHHHHHHc
Q psy11525 180 --RAIQVSILTHNWDRALELALR---HK---THIDTVLYQRKKYLDNL 219 (244)
Q Consensus 180 --~Ai~m~~~l~~W~~Al~LA~~---~~---~~~~~vl~~r~~yl~~~ 219 (244)
..-.++..++++++|++..++ .+ +....+......+++..
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 234567889999998776543 11 22344444445555443
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=94.63 E-value=0.3 Score=36.05 Aligned_cols=83 Identities=8% Similarity=-0.047 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC----CCHHHH-
Q psy11525 107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH----GLIFRA- 181 (244)
Q Consensus 107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~----g~~~~A- 181 (244)
...|..+|....+.++++.|..+|.+.= +.--........+|.++..+|++++|...|.++ .....|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAV--------KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 3568889999999999999999997631 111111122356788999999999998887654 111111
Q ss_pred ---HHHHHHhcCHHHHHHH
Q psy11525 182 ---IQVSILTHNWDRALEL 197 (244)
Q Consensus 182 ---i~m~~~l~~W~~Al~L 197 (244)
-..+..+++|++|++.
T Consensus 85 ~~lg~~~~~~~~~~~A~~~ 103 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRA 103 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHH
Confidence 2345556666666544
No 116
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=94.58 E-value=0.33 Score=33.42 Aligned_cols=87 Identities=9% Similarity=-0.041 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCH--
Q psy11525 106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH-----GLI-- 178 (244)
Q Consensus 106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~-- 178 (244)
....|..+|......++++.|..+|.+.-.. -..........|.++...|++++|...|.++ +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 74 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG 74 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHH
Confidence 3467889999999999999999998864211 1111122356788889999999999888664 111
Q ss_pred -HHHHHHHHHhcCHHHHHHHHHh
Q psy11525 179 -FRAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 179 -~~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
...-.++..++++++|++..++
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 1123567778888888766544
No 117
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=94.52 E-value=0.77 Score=31.98 Aligned_cols=86 Identities=10% Similarity=-0.087 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCC-----CH---
Q psy11525 107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHG-----LI--- 178 (244)
Q Consensus 107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g-----~~--- 178 (244)
...|..+|......++++.|..+|.+.-.. -..........|.++...|++++|...|.++- .+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence 467888999999999999999988764211 01111223567899999999999999987641 11
Q ss_pred HHHHHHHHHhcCHHHHHHHHHh
Q psy11525 179 FRAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 179 ~~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
...-..+..+++|++|++..++
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHH
Confidence 1224578888999998876654
No 118
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.51 E-value=0.24 Score=47.58 Aligned_cols=81 Identities=14% Similarity=-0.054 Sum_probs=53.9
Q ss_pred HHHHcCCHHHHHHHHhcc-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHH
Q psy11525 87 SYAASHSWPQALSLCRTL-------------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAA 153 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~ 153 (244)
.-+..|++++|.+.++.. .+...|..+|...+..++++.|...|.+.-.. --...+-..
T Consensus 400 ~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~ 471 (681)
T 2pzi_A 400 QATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVW 471 (681)
T ss_dssp HHTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHH
T ss_pred hcccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHH
Confidence 337899999998877653 24578999999999999999999888653210 001111223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHC
Q psy11525 154 QQAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 154 ~~A~ia~~~G~~~eAe~~~l~~ 175 (244)
..|.++...|++++|.+.|.++
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~a 493 (681)
T 2pzi_A 472 YRAVAELLTGDYDSATKHFTEV 493 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 4566666667777776666553
No 119
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.51 E-value=0.14 Score=49.28 Aligned_cols=45 Identities=11% Similarity=-0.072 Sum_probs=40.1
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAA 132 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~ 132 (244)
++..|++++|.+..+.. .+...|..+|...+..++++.|+.+|.+
T Consensus 443 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 492 (681)
T 2pzi_A 443 LLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTE 492 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 57899999999988774 5788999999999999999999999876
No 120
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.50 E-value=0.46 Score=40.25 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=28.8
Q ss_pred HHHHHHHhcc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 95 PQALSLCRTL------NDDILWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 95 ~~A~~~~~~~------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
++|..+.+.. .....|..+|......++++.|+.+|.+.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777665542 24568888888888888888888888763
No 121
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=94.47 E-value=0.78 Score=39.79 Aligned_cols=136 Identities=10% Similarity=-0.097 Sum_probs=83.7
Q ss_pred HHcCCHHHHHHHHhcc-------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc-------
Q psy11525 89 AASHSWPQALSLCRTL-------N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV------- 150 (244)
Q Consensus 89 l~~~~~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~------- 150 (244)
...|++++|....+.. . ....+..+|......++++.|...|.+. +.-.....+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a--------l~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA--------LDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------HHHHHTSTTCHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH--------HHHHHhCCCchhhHHH
Confidence 6889999999887653 1 2457788888888889988888877652 222222221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCCC-------HHHH-------HHHHHHhcCHHHHHHHHHh-------cC-CchhHH
Q psy11525 151 KAAQQAEMYLLGGNISEAESILLQHGL-------IFRA-------IQVSILTHNWDRALELALR-------HK-THIDTV 208 (244)
Q Consensus 151 ~~~~~A~ia~~~G~~~eAe~~~l~~g~-------~~~A-------i~m~~~l~~W~~Al~LA~~-------~~-~~~~~v 208 (244)
.....|.++...|++++|.+.|.++=. .... =.+|..++++++|++..++ .+ +.....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 123578889999999999988866522 2111 2356677888877655443 22 222233
Q ss_pred HHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525 209 LYQRKKYLDNLEK-IETNEKFLRLQ 232 (244)
Q Consensus 209 l~~r~~yl~~~~~-~e~~~~f~~~~ 232 (244)
+..-..-+...|+ .++.+.|+++.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333333344444 56666666654
No 122
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=94.41 E-value=0.33 Score=36.84 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCH---
Q psy11525 107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH-----GLI--- 178 (244)
Q Consensus 107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~--- 178 (244)
...|..+|......++++.|..+|.+.-. .--....-...+|.++...|++++|...|.++ +.+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 82 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS--------IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 46789999999999999999999986421 11111223356899999999999999999775 111
Q ss_pred HHHHHHHHHhcCHHHHHHHHHh
Q psy11525 179 FRAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 179 ~~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
..--..|..++++++|++..++
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHH
Confidence 1224567788999998776543
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.39 Score=34.52 Aligned_cols=85 Identities=13% Similarity=-0.043 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCC-----CHH--
Q psy11525 107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHG-----LIF-- 179 (244)
Q Consensus 107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g-----~~~-- 179 (244)
...|..+|......++++.|..+|.+.= +.--.........|.++...|++++|...|.++= .+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMI--------KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH--------HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Confidence 3578999999999999999999987531 1111111233568999999999999999887641 111
Q ss_pred -HHHHHHHHhcCHHHHHHHHH
Q psy11525 180 -RAIQVSILTHNWDRALELAL 199 (244)
Q Consensus 180 -~Ai~m~~~l~~W~~Al~LA~ 199 (244)
.--..+..++++++|++.-+
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLD 96 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHH
Confidence 12345667778877766543
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=94.40 E-value=0.29 Score=37.45 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=56.4
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHH-HHHcCCH--HHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHH
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGM-ATYSRDL--ATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMY 159 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~-Al~~~~l--~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia 159 (244)
|...|++++|....+.. .+...|..+|.. ....+++ +.|..+|.+.-. .--.........|.++
T Consensus 54 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~ 125 (177)
T 2e2e_A 54 YLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALA--------LDSNEITALMLLASDA 125 (177)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH--------HCTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH--------hCCCcHHHHHHHHHHH
Confidence 48899999999988764 567889999988 7788887 888877764321 1001111234578888
Q ss_pred HHcCCHHHHHHHHHH
Q psy11525 160 LLGGNISEAESILLQ 174 (244)
Q Consensus 160 ~~~G~~~eAe~~~l~ 174 (244)
...|++++|...|.+
T Consensus 126 ~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 126 FMQANYAQAIELWQK 140 (177)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHH
Confidence 888888888887765
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=94.32 E-value=0.47 Score=33.54 Aligned_cols=87 Identities=9% Similarity=-0.021 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCC-----CHH-
Q psy11525 106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHG-----LIF- 179 (244)
Q Consensus 106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g-----~~~- 179 (244)
+...|..+|......++++.|..+|.+.-... ..........|.++...|++++|.+.|.++- .+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence 45788999999999999999999987643221 0011223567888899999999999887641 111
Q ss_pred --HHHHHHHHhcCHHHHHHHHHh
Q psy11525 180 --RAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 180 --~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
..-.++..++++++|++..++
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 123567788888888776654
No 126
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=94.27 E-value=1.5 Score=36.95 Aligned_cols=93 Identities=11% Similarity=-0.022 Sum_probs=59.7
Q ss_pred EEEEecCCcEEEeecCcc-HHHHHHHHHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHH
Q psy11525 64 LTIRRYDGTVINYPISPY-ISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYI 142 (244)
Q Consensus 64 v~~~~~~G~~~~~~~~p~-~~~l~~~l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l 142 (244)
+.+. .+|+.+.....+. .+.+.+++...- -.....+..+|..++..++++.|+..|.+.=
T Consensus 84 ~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~l----------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-------- 144 (287)
T 3qou_A 84 VYLF-QNGQPVDGFQGPQPEEAIRALLDXVL----------PREEELXAQQAMQLMQESNYTDALPLLXDAW-------- 144 (287)
T ss_dssp EEEE-ETTEEEEEEESCCCHHHHHHHHHHHS----------CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------
T ss_pred EEEE-ECCEEEEEeeCCCCHHHHHHHHHHHc----------CCchhhHHHHHHHHHhCCCHHHHHHHHHHHH--------
Confidence 4444 3787765433333 345555543221 2445678899999999999999999888631
Q ss_pred HHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525 143 NHIKGIPVKAAQQAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 143 ~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~ 175 (244)
..--+..+-....|.+++..|++++|...|.+.
T Consensus 145 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 145 QLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 111111122345788888999999998888776
No 127
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=94.27 E-value=0.3 Score=38.36 Aligned_cols=80 Identities=11% Similarity=0.058 Sum_probs=56.7
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHh
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDD----------------ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHI 145 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~----------------~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i 145 (244)
.+...|+|++|....... ... ..|..+|......++++.|..+|.+.-.. -
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~ 118 (198)
T 2fbn_A 47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------D 118 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------S
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------C
Confidence 358899999999887763 222 78999999999999999998888753211 0
Q ss_pred hCCCcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525 146 KGIPVKAAQQAEMYLLGGNISEAESILLQ 174 (244)
Q Consensus 146 ~~~~~~~~~~A~ia~~~G~~~eAe~~~l~ 174 (244)
..........|.++...|++++|...|.+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 01112235678888888888888777754
No 128
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=94.26 E-value=0.43 Score=33.47 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCCHH-------
Q psy11525 107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIF------- 179 (244)
Q Consensus 107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~------- 179 (244)
...|..+|......++++.|..+|.+.-.. -..........|.++...|++++|...|.++-...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence 457889999999999999999988764221 11111223567889999999999998887642211
Q ss_pred --------HHHHHHHHhcCHHHHHHHHH
Q psy11525 180 --------RAIQVSILTHNWDRALELAL 199 (244)
Q Consensus 180 --------~Ai~m~~~l~~W~~Al~LA~ 199 (244)
..-.++..+++|++|++.-+
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~ 103 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYN 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 11345667777777766554
No 129
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.25 E-value=0.92 Score=32.16 Aligned_cols=83 Identities=10% Similarity=-0.113 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHHHHHHHHHHHcCCHHHHHHHHHHC-----CC---H
Q psy11525 110 WACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKAAQQAEMYLLGGNISEAESILLQH-----GL---I 178 (244)
Q Consensus 110 W~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~---~ 178 (244)
+-.+|...+..++++.|...|.++- +.--..+ +.....|.++...|++++|...|.+. +. +
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~--------~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFL--------ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAA 76 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH--------HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH--------HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccH
Confidence 4567888889999999988887531 1111111 23356899999999999999998764 22 1
Q ss_pred ---HHHHHHHHHhcCHHHHHHHHHh
Q psy11525 179 ---FRAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 179 ---~~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
...-..+..++++++|++.-++
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1224567888999999876544
No 130
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=94.24 E-value=0.55 Score=33.82 Aligned_cols=87 Identities=11% Similarity=-0.054 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCC-----CHH
Q psy11525 105 NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHG-----LIF 179 (244)
Q Consensus 105 ~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g-----~~~ 179 (244)
.+...|..+|......++++.|..+|.+.-.. -..........|.++...|++++|...|.++- .+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 78 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 78 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH
Confidence 35678999999999999999999998763211 11112234568999999999999999887652 111
Q ss_pred ---HHHHHHHHhcCHHHHHHHHH
Q psy11525 180 ---RAIQVSILTHNWDRALELAL 199 (244)
Q Consensus 180 ---~Ai~m~~~l~~W~~Al~LA~ 199 (244)
.--..+..+++|++|++..+
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQ 101 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 22345677888888866544
No 131
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.23 E-value=0.46 Score=40.06 Aligned_cols=109 Identities=11% Similarity=0.025 Sum_probs=75.0
Q ss_pred HHHcCCHHHHHHHHhcc-------C----CHHHHHHHHHHHHHc-CCHHHHHHHHHHhCChhHHHHHHHhhCC---CcHH
Q psy11525 88 YAASHSWPQALSLCRTL-------N----DDILWACLAGMATYS-RDLATSEEAYAAIEQVDKVMYINHIKGI---PVKA 152 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~-~~l~~A~~~y~~l~d~~~v~~l~~i~~~---~~~~ 152 (244)
|...|++++|....+.. . ....|..+|...... ++++.|..+|.+.-.. ....... ....
T Consensus 87 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~-----~~~~~~~~~~~~~~ 161 (292)
T 1qqe_A 87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW-----YAQDQSVALSNKCF 161 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----HHHTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-----HHhCCChHHHHHHH
Confidence 47789999998766553 1 135788899988886 9999999998864221 1111000 1113
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHCCC-------H--------HHHHHHHHHhcCHHHHHHHHHhc
Q psy11525 153 AQQAEMYLLGGNISEAESILLQHGL-------I--------FRAIQVSILTHNWDRALELALRH 201 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eAe~~~l~~g~-------~--------~~Ai~m~~~l~~W~~Al~LA~~~ 201 (244)
...|.++..+|++++|...|.++.. . ...-..+..++++++|+..-++.
T Consensus 162 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4579999999999999999987422 1 22345688899999998876653
No 132
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.23 E-value=0.51 Score=43.99 Aligned_cols=83 Identities=10% Similarity=0.071 Sum_probs=59.2
Q ss_pred HHHcCCHHHHHHHHhcc-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH---
Q psy11525 88 YAASHSWPQALSLCRTL-------------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK--- 151 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~--- 151 (244)
+-..|+|++|..+++.. .+-.....||......++++-|+..|.+. +...+++-.-..+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a-----L~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM-----VDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHSCTTCHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----HHHHHHHcCCCCHHHH
Confidence 45789999998887553 23567888999999999999999888763 3333344333322
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525 152 --AAQQAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 152 --~~~~A~ia~~~G~~~eAe~~~l~~ 175 (244)
...+|.++..+|++++|+.+|.++
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 245788888888888888887653
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.19 E-value=0.66 Score=34.26 Aligned_cols=118 Identities=11% Similarity=-0.052 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCHH-
Q psy11525 106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH-----GLIF- 179 (244)
Q Consensus 106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~- 179 (244)
....|..+|......++++.|..+|.+.-.. -..........|.++...|++++|...|.++ +.+.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 3467999999999999999999998764211 1111122356789999999999999998764 2222
Q ss_pred --HHHHHHHHhcCHHHHHHHHHh---cCCchhHH---HHHHHHHHHHcCCcccHHHHHhc
Q psy11525 180 --RAIQVSILTHNWDRALELALR---HKTHIDTV---LYQRKKYLDNLEKIETNEKFLRL 231 (244)
Q Consensus 180 --~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~v---l~~r~~yl~~~~~~e~~~~f~~~ 231 (244)
..-..+..++++++|++..++ .++.-... +.....++......++.+.|.+.
T Consensus 84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 123567889999999877654 23331222 22222244433335555555554
No 134
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.07 E-value=0.31 Score=38.86 Aligned_cols=86 Identities=8% Similarity=-0.018 Sum_probs=62.5
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChh--HHHHHHHhhCCCcHHHHHHHHHH
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVD--KVMYINHIKGIPVKAAQQAEMYL 160 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~--~v~~l~~i~~~~~~~~~~A~ia~ 160 (244)
+...|++++|.+.+... .....|..+|......++++.|..+|.+.-... -..+... +.+.....|.+..
T Consensus 52 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---~~~~~~~~g~~~~ 128 (228)
T 4i17_A 52 ADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKL---YAIYYLKEGQKFQ 128 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHH---HHHHHHHHhHHHH
Confidence 48899999999988774 457889999999999999999999887542110 0000000 0012456788999
Q ss_pred HcCCHHHHHHHHHHCC
Q psy11525 161 LGGNISEAESILLQHG 176 (244)
Q Consensus 161 ~~G~~~eAe~~~l~~g 176 (244)
..|++++|.+.|.++=
T Consensus 129 ~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 129 QAGNIEKAEENYKHAT 144 (228)
T ss_dssp HTTCHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHH
Confidence 9999999999998863
No 135
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.01 E-value=0.66 Score=39.24 Aligned_cols=133 Identities=9% Similarity=0.020 Sum_probs=77.6
Q ss_pred HHcCCHHHHHHHHhcc-----CCHH-HHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHH--
Q psy11525 89 AASHSWPQALSLCRTL-----NDDI-LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYL-- 160 (244)
Q Consensus 89 l~~~~~~~A~~~~~~~-----~~~~-lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~-- 160 (244)
...|++++|..+-+.. .... .|..+|......++++.|+.+|.+.-... . .......+...+
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---------p-~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---------R-TRHHVYVTAALMEY 179 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---------T-CCTHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---------C-CCHHHHHHHHHHHH
Confidence 6789999999877663 2234 89999999999999999999988642211 0 011112222222
Q ss_pred -HcCCHHHHHHHHHHC-----CCH---HHHHHHHHHhcCHHHHHHHHHhc------CCc-hhHHHHHHHHHHHHcCCc-c
Q psy11525 161 -LGGNISEAESILLQH-----GLI---FRAIQVSILTHNWDRALELALRH------KTH-IDTVLYQRKKYLDNLEKI-E 223 (244)
Q Consensus 161 -~~G~~~eAe~~~l~~-----g~~---~~Ai~m~~~l~~W~~Al~LA~~~------~~~-~~~vl~~r~~yl~~~~~~-e 223 (244)
..|++++|.++|.++ +.+ ..-..++..+|+.++|..+-++- ++. -..+......++...|.. +
T Consensus 180 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 258888888777654 111 11244556667777776554431 221 233444455566666664 3
Q ss_pred cHHHHHhc
Q psy11525 224 TNEKFLRL 231 (244)
Q Consensus 224 ~~~~f~~~ 231 (244)
....++++
T Consensus 260 a~~~~~~a 267 (308)
T 2ond_A 260 ILKVEKRR 267 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
No 136
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=93.96 E-value=1.5 Score=34.68 Aligned_cols=106 Identities=16% Similarity=0.088 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHh---hCCC-c-----HHHHHHHHHHHcCCHHHHHHHHHHCC
Q psy11525 106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHI---KGIP-V-----KAAQQAEMYLLGGNISEAESILLQHG 176 (244)
Q Consensus 106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i---~~~~-~-----~~~~~A~ia~~~G~~~eAe~~~l~~g 176 (244)
....|...|....+.++++.|..+|.+.= .+.-.. ..+. . -....|.++..+|+|++|...|
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL-----~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~---- 80 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAM-----EISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSA---- 80 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----hhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHH----
Confidence 45688999999999999999999998632 111110 0000 0 2345788888899999988876
Q ss_pred CHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH----HHHHHHHHHcCC-cccHHHHHhcc
Q psy11525 177 LIFRAIQVSILTHNWDRALELALRHKTHIDTVL----YQRKKYLDNLEK-IETNEKFLRLQ 232 (244)
Q Consensus 177 ~~~~Ai~m~~~l~~W~~Al~LA~~~~~~~~~vl----~~r~~yl~~~~~-~e~~~~f~~~~ 232 (244)
++||++ |+++++ .++.-...+ +.|..-|..+|+ +|+.+-|+++.
T Consensus 81 --~kAL~l------~n~~~e----~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 81 --DKALHY------FNRRGE----LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp --HHHHHH------HHHHCC----TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHh------hhcccc----CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 445655 555543 344433444 667777777777 68888888874
No 137
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.92 E-value=1.2 Score=36.26 Aligned_cols=132 Identities=14% Similarity=0.016 Sum_probs=86.9
Q ss_pred cCCHHHHHHHHhcc---CCHHHHHHHHHHHHH----cCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH--
Q psy11525 91 SHSWPQALSLCRTL---NDDILWACLAGMATY----SRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL-- 161 (244)
Q Consensus 91 ~~~~~~A~~~~~~~---~~~~lW~~LA~~Al~----~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~-- 161 (244)
.+++++|....+.. .....|..||..... .++++.|..+|.+.-+.. ..+.....|.++..
T Consensus 91 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----------DGDGCTILGSLYDAGR 160 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTS
T ss_pred ccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHcCC
Confidence 89999998877653 678899999999999 899999998887632211 11223456778877
Q ss_pred --cCCHHHHHHHHHHC---CCHHHH---HHHHHH----hcCHHHHHHHHHhcC-CchhHHHHHHHHHHHH----cC-Ccc
Q psy11525 162 --GGNISEAESILLQH---GLIFRA---IQVSIL----THNWDRALELALRHK-THIDTVLYQRKKYLDN----LE-KIE 223 (244)
Q Consensus 162 --~G~~~eAe~~~l~~---g~~~~A---i~m~~~----l~~W~~Al~LA~~~~-~~~~~vl~~r~~yl~~----~~-~~e 223 (244)
.|++++|...|.++ +.+... -.+|.. .+++++|++.-++-- ..-..........+.. .+ ..+
T Consensus 161 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~ 240 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQ 240 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTT
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 89999999998765 443322 346777 889999987765421 1112333333333333 33 456
Q ss_pred cHHHHHhcc
Q psy11525 224 TNEKFLRLQ 232 (244)
Q Consensus 224 ~~~~f~~~~ 232 (244)
+.+.|+++.
T Consensus 241 A~~~~~~a~ 249 (273)
T 1ouv_A 241 AIENFKKGC 249 (273)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 667777664
No 138
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=93.82 E-value=0.15 Score=36.71 Aligned_cols=77 Identities=12% Similarity=-0.026 Sum_probs=48.1
Q ss_pred cCCHHHHHHHHhcc-C-------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525 91 SHSWPQALSLCRTL-N-------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG 162 (244)
Q Consensus 91 ~~~~~~A~~~~~~~-~-------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~ 162 (244)
.|++++|....+.. . ....|..||......++++.|..+|.+.- +.--...+.....|.++...
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~l~~~~~~~ 74 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV--------KQFPNHQALRVFYAMVLYNL 74 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHCTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCchHHHHHHHHHHHHc
Confidence 45666666655442 1 24678889999999999999988887521 11111122235578888888
Q ss_pred CCHHHHHHHHHHC
Q psy11525 163 GNISEAESILLQH 175 (244)
Q Consensus 163 G~~~eAe~~~l~~ 175 (244)
|++++|...|.++
T Consensus 75 g~~~~A~~~~~~a 87 (117)
T 3k9i_A 75 GRYEQGVELLLKI 87 (117)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8888888877553
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=93.60 E-value=2.1 Score=35.71 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q psy11525 109 LWACLAGMATYSRDLATSEEAYA 131 (244)
Q Consensus 109 lW~~LA~~Al~~~~l~~A~~~y~ 131 (244)
.|..+|......++++.|..+|.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~ 179 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFE 179 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 44445555555555555555444
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=93.55 E-value=0.76 Score=33.46 Aligned_cols=83 Identities=13% Similarity=-0.175 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCHHH---
Q psy11525 109 LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH-----GLIFR--- 180 (244)
Q Consensus 109 lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~~--- 180 (244)
.|-.+|...+..++++.|..+|.+.= +.--...+-...+|.++...|++++|...|.++ +.+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al--------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVC--------QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHH--------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 47778889999999999998887521 111111122356788888999999888887654 11111
Q ss_pred HHHHHHHhcCHHHHHHHHH
Q psy11525 181 AIQVSILTHNWDRALELAL 199 (244)
Q Consensus 181 Ai~m~~~l~~W~~Al~LA~ 199 (244)
--..+..++++++|++..+
T Consensus 91 la~~~~~~g~~~~A~~~~~ 109 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLR 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 1134555666666665443
No 141
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=93.52 E-value=0.44 Score=40.51 Aligned_cols=108 Identities=8% Similarity=0.012 Sum_probs=65.6
Q ss_pred HHHHHHHcCCHHHHHHHHhcc-------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc--
Q psy11525 84 VLHSYAASHSWPQALSLCRTL-------N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV-- 150 (244)
Q Consensus 84 ~l~~~l~~~~~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~-- 150 (244)
...-|...|+|++|....... . ....|..+|......++++.|..+|.+.-+. .....+
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~~~~g~~~ 113 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM--------YVENGTPD 113 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--------HHTTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------HHHcCCHH
Confidence 334467789999988766543 1 1346777888888888888888877643211 111111
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHCC-------CHHHH-------HHHHHHhcCHHHHHHHHHh
Q psy11525 151 ----KAAQQAEMYLLGGNISEAESILLQHG-------LIFRA-------IQVSILTHNWDRALELALR 200 (244)
Q Consensus 151 ----~~~~~A~ia~~~G~~~eAe~~~l~~g-------~~~~A-------i~m~~~l~~W~~Al~LA~~ 200 (244)
.....|.++.. |++++|...|.++- ++..+ -.+|..++++++|++..++
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12346677766 88888877776542 22222 3456677787777665443
No 142
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.27 E-value=0.82 Score=41.58 Aligned_cols=101 Identities=11% Similarity=-0.019 Sum_probs=69.5
Q ss_pred HHHcCCHHHHHHHHhcc-----CC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC
Q psy11525 88 YAASHSWPQALSLCRTL-----ND---------------DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG 147 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~---------------~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~ 147 (244)
+...|+|++|....+.. .. ...|..+|...++.++++.|..+|.+.=. .--.
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--------~~p~ 349 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--------LDSA 349 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HSTT
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--------cCCc
Confidence 48899999999877653 22 47899999999999999999888876321 1111
Q ss_pred CCcHHHHHHHHHHHcCCHHHHHHHHHHCCCH--------HHHHHHHHHhcCHHHHHH
Q psy11525 148 IPVKAAQQAEMYLLGGNISEAESILLQHGLI--------FRAIQVSILTHNWDRALE 196 (244)
Q Consensus 148 ~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~--------~~Ai~m~~~l~~W~~Al~ 196 (244)
......++|.++..+|++++|...|.++=.. ...-.++..++++++|..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123356899999999999999999875221 112344555666666543
No 143
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=93.21 E-value=0.47 Score=34.34 Aligned_cols=82 Identities=12% Similarity=0.022 Sum_probs=52.8
Q ss_pred HHHcCCHHHHHHHHhcc-------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHHH
Q psy11525 88 YAASHSWPQALSLCRTL-------N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKAA 153 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~~ 153 (244)
+...|++++|.+..+.. . ....|..+|......++++.|..+|.+.- ...+...... ....
T Consensus 59 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~~ 133 (164)
T 3ro3_A 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-----AIAQELKDRIGEGRACW 133 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHccchHhHHHHHH
Confidence 48899999999888764 1 14568889999999999999998887632 2222221100 0123
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy11525 154 QQAEMYLLGGNISEAESILLQ 174 (244)
Q Consensus 154 ~~A~ia~~~G~~~eAe~~~l~ 174 (244)
..|.++...|++++|.+.|.+
T Consensus 134 ~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 134 SLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHH
Confidence 456666667777766665543
No 144
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=93.15 E-value=2.7 Score=33.54 Aligned_cols=146 Identities=11% Similarity=0.013 Sum_probs=81.0
Q ss_pred HHHHHcCCHHHHHHHHhccC-----C---HHHHHHHHHHHHHcCCHHHHHHHHHHhCC-----hh--HHHHHHHhhC---
Q psy11525 86 HSYAASHSWPQALSLCRTLN-----D---DILWACLAGMATYSRDLATSEEAYAAIEQ-----VD--KVMYINHIKG--- 147 (244)
Q Consensus 86 ~~~l~~~~~~~A~~~~~~~~-----~---~~lW~~LA~~Al~~~~l~~A~~~y~~l~d-----~~--~v~~l~~i~~--- 147 (244)
..++..|+|++|......+. + ...|-.+|......++++.|..+|.++=. .. .+.+..-...
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~ 91 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMAL 91 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhh
Confidence 34689999999999887751 1 46799999999999999999999876421 11 0111000000
Q ss_pred ---CCcHHHHHHHHHHHcCCHHHHHHHHHHC-------CCHHHH------------------HHHHHHhcCHHHHHHHHH
Q psy11525 148 ---IPVKAAQQAEMYLLGGNISEAESILLQH-------GLIFRA------------------IQVSILTHNWDRALELAL 199 (244)
Q Consensus 148 ---~~~~~~~~A~ia~~~G~~~eAe~~~l~~-------g~~~~A------------------i~m~~~l~~W~~Al~LA~ 199 (244)
..+.....+......|++++|...|.+. .....| -..|...++|++|+...+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 171 (225)
T 2yhc_A 92 DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVE 171 (225)
T ss_dssp HC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 0000001111222256777777766543 111111 235677888888876655
Q ss_pred h---cCCc---hhHHHHHHHHHHHHcCCc-ccHHHHHhc
Q psy11525 200 R---HKTH---IDTVLYQRKKYLDNLEKI-ETNEKFLRL 231 (244)
Q Consensus 200 ~---~~~~---~~~vl~~r~~yl~~~~~~-e~~~~f~~~ 231 (244)
+ ..|. ..+.+.....-+...|+. +..+.|++.
T Consensus 172 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 172 GMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4 2222 345566666666666664 555555543
No 145
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.07 E-value=0.73 Score=42.06 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=59.7
Q ss_pred HHHHHHcCCHHHHHHHHhcc-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH
Q psy11525 85 LHSYAASHSWPQALSLCRTL-------------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK 151 (244)
Q Consensus 85 l~~~l~~~~~~~A~~~~~~~-------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~ 151 (244)
+.++-..|+|++|..+++.. .+-.....||......++++.|+.-|.+. +...+++-.-..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~-----L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT-----MEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----HHHHHHHSCSSCH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH-----HHhHHHHcCCCCh
Confidence 44567899999999988653 13467888999999999999999888764 3333344333322
Q ss_pred H-----HHHHHHHHHcCCHHHHHHHHHH
Q psy11525 152 A-----AQQAEMYLLGGNISEAESILLQ 174 (244)
Q Consensus 152 ~-----~~~A~ia~~~G~~~eAe~~~l~ 174 (244)
. ..+|.++..+|++++|+.+|.+
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2 3577888888888887777644
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=93.02 E-value=0.52 Score=40.92 Aligned_cols=80 Identities=13% Similarity=0.028 Sum_probs=60.5
Q ss_pred HHHcCCHHHHHHHHhcc-----CC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC
Q psy11525 88 YAASHSWPQALSLCRTL-----ND---------------DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG 147 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~---------------~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~ 147 (244)
+...|+|++|....+.. .. ...|..+|...+..++++-|..+|.+.=.. --.
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~ 228 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--------DSN 228 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence 48899999999877663 22 489999999999999999999988764211 011
Q ss_pred CCcHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525 148 IPVKAAQQAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 148 ~~~~~~~~A~ia~~~G~~~eAe~~~l~~ 175 (244)
.......+|.++..+|++++|...|.++
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1122356899999999999999988765
No 147
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=92.90 E-value=1.7 Score=35.24 Aligned_cols=113 Identities=17% Similarity=0.008 Sum_probs=75.2
Q ss_pred HHHcCCHHHHHHHHhcc--------CCHHHHHHHHHHHHH--------cCCHHHHHHHHHHhCC-----hhHHHHHHHhh
Q psy11525 88 YAASHSWPQALSLCRTL--------NDDILWACLAGMATY--------SRDLATSEEAYAAIEQ-----VDKVMYINHIK 146 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~--------~~~~lW~~LA~~Al~--------~~~l~~A~~~y~~l~d-----~~~v~~l~~i~ 146 (244)
|...|+|++|....+.. .....|..+|..... .++++.|...|.++-. ......+..+.
T Consensus 62 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~ 141 (261)
T 3qky_A 62 YYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIR 141 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHH
Confidence 58999999999988774 125678889998888 8999999999886421 11111111111
Q ss_pred CC----CcHHHHHHHHHHHcCCHHHHHHHHHHC----CC---HHHH----HHHHHHh----------cCHHHHHHHHHh
Q psy11525 147 GI----PVKAAQQAEMYLLGGNISEAESILLQH----GL---IFRA----IQVSILT----------HNWDRALELALR 200 (244)
Q Consensus 147 ~~----~~~~~~~A~ia~~~G~~~eAe~~~l~~----g~---~~~A----i~m~~~l----------~~W~~Al~LA~~ 200 (244)
.. .+.....|.++...|++++|...|.+. .. ...| -..|..+ +++++|+..-++
T Consensus 142 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 142 ELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 11 112356799999999999999999764 11 2222 2345544 888999876554
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=92.86 E-value=1.2 Score=38.61 Aligned_cols=124 Identities=9% Similarity=-0.093 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---------------c
Q psy11525 91 SHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---------------V 150 (244)
Q Consensus 91 ~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---------------~ 150 (244)
.++|++|....+.. .....|..+|......++++.|..+|.+.-. ...... .
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--------~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--------WLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HTTTCCCCCSHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------HhhccccCChHHHHHHHHHHHH
Confidence 44455555443332 2457899999999999999999999986321 111111 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCC-----CHH---HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHc
Q psy11525 151 KAAQQAEMYLLGGNISEAESILLQHG-----LIF---RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNL 219 (244)
Q Consensus 151 ~~~~~A~ia~~~G~~~eAe~~~l~~g-----~~~---~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~ 219 (244)
....+|.++...|++++|...|.++= .+. ..-..|..++++++|++..++ .++...........-+...
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 23568999999999999999997751 111 223467889999999766543 4454344444444444444
Q ss_pred CCc
Q psy11525 220 EKI 222 (244)
Q Consensus 220 ~~~ 222 (244)
|+.
T Consensus 278 ~~~ 280 (336)
T 1p5q_A 278 RRQ 280 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 149
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=92.85 E-value=0.97 Score=31.86 Aligned_cols=61 Identities=10% Similarity=-0.050 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHH
Q psy11525 105 NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILL 173 (244)
Q Consensus 105 ~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l 173 (244)
.....|..+|......++++.|+.+|.+.-.. --.........|.++...|++++|...|.
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46789999999999999999999988763211 00111123457888888888888887764
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=92.83 E-value=1.7 Score=37.58 Aligned_cols=106 Identities=11% Similarity=-0.041 Sum_probs=73.1
Q ss_pred HHHcCCHHHHHHHHhccC----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChh-HHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525 88 YAASHSWPQALSLCRTLN----DDILWACLAGMATYSRDLATSEEAYAAIEQVD-KVMYINHIKGIPVKAAQQAEMYLLG 162 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~-~v~~l~~i~~~~~~~~~~A~ia~~~ 162 (244)
++..|++++|.+...... ....+-.+|..+++.++++.|+.+|....... .. + ..+-....|.++..+
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~--~-----~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF--L-----AGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH--H-----HHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc--c-----HHHHHHHHHHHHHHC
Confidence 488999999999998752 22266778889999999999999886433211 00 0 001235678999999
Q ss_pred CCHHHHHHHHHHC--CC--HH---HH----HHHHHHhcCHHHHHHHHHh
Q psy11525 163 GNISEAESILLQH--GL--IF---RA----IQVSILTHNWDRALELALR 200 (244)
Q Consensus 163 G~~~eAe~~~l~~--g~--~~---~A----i~m~~~l~~W~~Al~LA~~ 200 (244)
|++++|...|-+. |. |. .| -..+..+|+.++|..+-++
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999987 33 21 11 2345778888888775543
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.50 E-value=1.1 Score=32.21 Aligned_cols=90 Identities=17% Similarity=-0.018 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCHH-
Q psy11525 106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH-----GLIF- 179 (244)
Q Consensus 106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~- 179 (244)
....|..+|..+...++++.|..+|.+.-....-.. .........|.++...|++++|...|.++ ..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-----DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-----HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 457899999999999999999999886532210000 00112245788999999999999988764 2221
Q ss_pred --HHHHHHHHhcCHHHHHHHHHh
Q psy11525 180 --RAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 180 --~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
..-.++..++++++|+...++
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 223567788888888766543
No 152
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=92.32 E-value=3.7 Score=34.99 Aligned_cols=136 Identities=12% Similarity=0.052 Sum_probs=85.0
Q ss_pred HHHcCCHHHHHHHHhcc----C------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc--H----
Q psy11525 88 YAASHSWPQALSLCRTL----N------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV--K---- 151 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~----~------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~--~---- 151 (244)
+...|++++|...++.. . ....|..+|......++++.|...|.+.-.. ...... .
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~--------~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL--------LGNGKYHSDWISN 216 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HTTSCCCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HhccCcchhHHHH
Confidence 47889999999888763 1 2356888999999999999999888754211 111111 0
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHCCCHH------------HHHHHHHHhcCHHHHHHHHHhc-------CCc--hhHHH
Q psy11525 152 -AAQQAEMYLLGGNISEAESILLQHGLIF------------RAIQVSILTHNWDRALELALRH-------KTH--IDTVL 209 (244)
Q Consensus 152 -~~~~A~ia~~~G~~~eAe~~~l~~g~~~------------~Ai~m~~~l~~W~~Al~LA~~~-------~~~--~~~vl 209 (244)
....+.++...|++++|...+.++-.+. ..-..+...+++++|+++.++. +.. .-.+.
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 1124456778999999999998764321 2236777889999887766542 211 11234
Q ss_pred HHHHHHHHHcCC-cccHHHHHhc
Q psy11525 210 YQRKKYLDNLEK-IETNEKFLRL 231 (244)
Q Consensus 210 ~~r~~yl~~~~~-~e~~~~f~~~ 231 (244)
......+...|+ .+....|+++
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 444454555555 4555555554
No 153
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=92.28 E-value=0.19 Score=38.19 Aligned_cols=77 Identities=12% Similarity=0.053 Sum_probs=55.8
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHHHH
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMYLL 161 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia~~ 161 (244)
|...|+|++|.+..+.. .....|..+|......++++.|+.+|.+.= ++.. ..+.....|.++..
T Consensus 41 y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al---------~~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSV---------ELNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHH---------HhCCCCHHHHHHHHHHHHH
Confidence 57889999998887764 567889999999888888888888886531 1211 12233567888888
Q ss_pred cCCHHHHHHHHH
Q psy11525 162 GGNISEAESILL 173 (244)
Q Consensus 162 ~G~~~eAe~~~l 173 (244)
.|++++|.+.|+
T Consensus 112 ~~~~~~aa~~~~ 123 (150)
T 4ga2_A 112 NDVTDGRAKYWV 123 (150)
T ss_dssp HCSSSSHHHHHH
T ss_pred cCChHHHHHHHH
Confidence 888887776664
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=92.25 E-value=1.7 Score=36.44 Aligned_cols=87 Identities=13% Similarity=-0.026 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCC-----HH-
Q psy11525 106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGL-----IF- 179 (244)
Q Consensus 106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~-----~~- 179 (244)
....|..+|......++++.|..+|.+.-. .--....-....|.++...|++++|...|.++-. +.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--------RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA 74 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence 346788999999999999999999975321 1111112235689999999999999999987522 11
Q ss_pred --HHHHHHHHhcCHHHHHHHHHh
Q psy11525 180 --RAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 180 --~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
.--..|..+++|++|+...++
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 113457788999988765543
No 155
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=92.23 E-value=2.4 Score=36.19 Aligned_cols=105 Identities=17% Similarity=0.014 Sum_probs=68.1
Q ss_pred HHHcCCHHHHHHHHhcc----C--CHH----HHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH------
Q psy11525 88 YAASHSWPQALSLCRTL----N--DDI----LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK------ 151 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~----~--~~~----lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~------ 151 (244)
++..|++++|...++.. . ... .+..+|......++++.|+..|.+.-.. .....+.
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM--------ARQHDVWHYALWS 95 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HHHTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--------HHhcCcHHHHHHH
Confidence 36789999999987652 1 121 4566777888888888888877653211 1112222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHC-------CC---HHHH------HHHHHHhcCHHHHHHHHHh
Q psy11525 152 AAQQAEMYLLGGNISEAESILLQH-------GL---IFRA------IQVSILTHNWDRALELALR 200 (244)
Q Consensus 152 ~~~~A~ia~~~G~~~eAe~~~l~~-------g~---~~~A------i~m~~~l~~W~~Al~LA~~ 200 (244)
....|.++...|++++|...|.++ +. +..+ -..+...|++++|.+..++
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 160 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 235788888999999998888654 21 1211 2356778888888776654
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=92.05 E-value=1.5 Score=34.21 Aligned_cols=86 Identities=7% Similarity=-0.089 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC----------------cHHHHHHHHHHHcCCHHHHHH
Q psy11525 107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP----------------VKAAQQAEMYLLGGNISEAES 170 (244)
Q Consensus 107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~----------------~~~~~~A~ia~~~G~~~eAe~ 170 (244)
...|..+|..+...++++.|..+|.+.-.. ....+ ......|.++...|++++|..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 109 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--------FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID 109 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 356889999999999999999999864211 00111 223457899999999999999
Q ss_pred HHHHCC-----CH---HHHHHHHHHhcCHHHHHHHHHh
Q psy11525 171 ILLQHG-----LI---FRAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 171 ~~l~~g-----~~---~~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
.|.++= .+ ...-..|..++++++|++..++
T Consensus 110 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 110 HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 987751 11 1123567889999999876554
No 157
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=92.03 E-value=0.68 Score=41.43 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=39.0
Q ss_pred HHcCC-HHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 89 AASHS-WPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 89 l~~~~-~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
...|+ +++|...++.. +....|..+|......++++-|..+|.+.
T Consensus 142 ~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka 192 (382)
T 2h6f_A 142 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI 192 (382)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 67886 99999988875 57899999999999999999999888754
No 158
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.02 E-value=0.8 Score=41.96 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=55.1
Q ss_pred cCCHHHHHHHHhcc-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHH-----
Q psy11525 91 SHSWPQALSLCRTL-------------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKA----- 152 (244)
Q Consensus 91 ~~~~~~A~~~~~~~-------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~----- 152 (244)
.|+|++|..+++.. .+-.....||......|+++.|+..|.+. +...+++-.-..+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a-----L~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI-----IKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHSCSSCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-----HHHHHHHcCCCChHHHHHH
Confidence 46788888887653 13466788999999999999999888874 33344443333322
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q psy11525 153 AQQAEMYLLGGNISEAESILLQ 174 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eAe~~~l~ 174 (244)
..+|.++..+|++++|+.+|.+
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHH
Confidence 4578888888888888877744
No 159
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=92.00 E-value=0.57 Score=39.78 Aligned_cols=107 Identities=10% Similarity=0.141 Sum_probs=70.2
Q ss_pred HHHcCCHHHHHHHHhcc-------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC---CcHHH
Q psy11525 88 YAASHSWPQALSLCRTL-------N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI---PVKAA 153 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~---~~~~~ 153 (244)
|...|++++|....+.. . ....|..+|..... ++++.|..+|.+.-+. ....... .....
T Consensus 86 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~-----~~~~~~~~~~~~~~~ 159 (307)
T 2ifu_A 86 LKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV-----FENEERLRQAAELIG 159 (307)
T ss_dssp HHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH-----HHHTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH-----HHhCCChhHHHHHHH
Confidence 46678888887766542 1 13567888888877 9999999888764321 1111000 11224
Q ss_pred HHHHHHHHcCCHHHHHHHHHHCCCHH--------------HHHHHHHHhcCHHHHHHHHHh
Q psy11525 154 QQAEMYLLGGNISEAESILLQHGLIF--------------RAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 154 ~~A~ia~~~G~~~eAe~~~l~~g~~~--------------~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
..|.++..+|++++|...|.++-... .....+..++++++|+..-++
T Consensus 160 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 57999999999999999988763321 112456667999999877665
No 160
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=91.97 E-value=0.6 Score=37.19 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=40.7
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
|...|++++|....+.. .....|..+|......++++.|..+|.+.
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 58899999999988774 56889999999999999999999998864
No 161
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=91.89 E-value=0.49 Score=42.02 Aligned_cols=79 Identities=10% Similarity=0.026 Sum_probs=52.2
Q ss_pred HHHcCCHHHHHHHHhccC---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhh
Q psy11525 88 YAASHSWPQALSLCRTLN---------------------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIK 146 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~~---------------------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~ 146 (244)
+...|+|++|.+..+..- ....|..+|...++.++++.|..+|.+.=..+ .
T Consensus 233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p 304 (370)
T 1ihg_A 233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--------P 304 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------T
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--------c
Confidence 488999999988766531 24678888888888888888877776432211 0
Q ss_pred CCCcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525 147 GIPVKAAQQAEMYLLGGNISEAESILLQ 174 (244)
Q Consensus 147 ~~~~~~~~~A~ia~~~G~~~eAe~~~l~ 174 (244)
........+|.++..+|++++|.+.|.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 0111234577888888888887766654
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=91.75 E-value=1.4 Score=33.07 Aligned_cols=90 Identities=18% Similarity=0.070 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC---CC------------cHHHHHHHHHHHcCCHHHHH
Q psy11525 105 NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG---IP------------VKAAQQAEMYLLGGNISEAE 169 (244)
Q Consensus 105 ~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~---~~------------~~~~~~A~ia~~~G~~~eAe 169 (244)
.....|...|..+...++++.|..+|.+.= ..+..... .. .....+|.++...|++++|.
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDAL-----TRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 345678999999999999999999998732 22222211 11 12245789999999999999
Q ss_pred HHHHHC-----CCH---HHHHHHHHHhcCHHHHHHHHH
Q psy11525 170 SILLQH-----GLI---FRAIQVSILTHNWDRALELAL 199 (244)
Q Consensus 170 ~~~l~~-----g~~---~~Ai~m~~~l~~W~~Al~LA~ 199 (244)
..|.++ +.+ ..--..|..+++|++|++.-+
T Consensus 84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 121 (162)
T 3rkv_A 84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121 (162)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 988765 221 122356788999999976544
No 163
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.37 E-value=2 Score=34.39 Aligned_cols=113 Identities=9% Similarity=-0.058 Sum_probs=69.6
Q ss_pred HHHcCCHHHHHHHHhcc-----CC---HHHHHHHHHHHHH------------------cCCHHHHHHHHHHhCC-----h
Q psy11525 88 YAASHSWPQALSLCRTL-----ND---DILWACLAGMATY------------------SRDLATSEEAYAAIEQ-----V 136 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~---~~lW~~LA~~Al~------------------~~~l~~A~~~y~~l~d-----~ 136 (244)
|...|+|++|....+.. .+ ...|-.+|..... .++.+-|..+|.++=+ .
T Consensus 51 ~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 51 YYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred HHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 58899999999988774 12 2256666655443 4567777777765422 1
Q ss_pred hHHHHHHHhhCC----CcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCH------HHHHHHHHHhcCHHHHHHHHHh
Q psy11525 137 DKVMYINHIKGI----PVKAAQQAEMYLLGGNISEAESILLQH-----GLI------FRAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 137 ~~v~~l~~i~~~----~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~------~~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
........+..+ .......|.++...|++++|...|.+. +.+ ..--..|..+|++++|++.-+.
T Consensus 131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 131 YTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 111111111111 112245788899999999999888764 121 2235678899999999876554
No 164
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=91.34 E-value=4.8 Score=36.12 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=21.8
Q ss_pred cCCHHHHHHHHhc---cCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q psy11525 91 SHSWPQALSLCRT---LNDDILWACLAGMATY----SRDLATSEEAYA 131 (244)
Q Consensus 91 ~~~~~~A~~~~~~---~~~~~lW~~LA~~Al~----~~~l~~A~~~y~ 131 (244)
.+++++|+...+. ......+..||..... .++++.|..+|.
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 5555555554443 1344555555555555 555555555554
No 165
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=91.31 E-value=0.82 Score=31.40 Aligned_cols=61 Identities=11% Similarity=-0.037 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525 106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQ 174 (244)
Q Consensus 106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~ 174 (244)
+...|..+|......++++.|..+|.+.-.. -..........|.++...|++++|.+.|.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 63 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3467888999999999999998888753211 001111234567777777777777666544
No 166
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=90.82 E-value=2.3 Score=37.42 Aligned_cols=44 Identities=7% Similarity=-0.083 Sum_probs=30.0
Q ss_pred HcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 90 ASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 90 ~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
..+++++|.+..+.. .....|..+|......++++.|..+|.+.
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 346667777766542 56778888999999999988888887653
No 167
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=90.70 E-value=1.9 Score=38.13 Aligned_cols=93 Identities=10% Similarity=-0.117 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHH----HHHHhhCCC----cHHHHHHHHHHHcCCHHHHHHHHHHCCC--
Q psy11525 108 ILWACLAGMATYSRDLATSEEAYAAIEQVDKVM----YINHIKGIP----VKAAQQAEMYLLGGNISEAESILLQHGL-- 177 (244)
Q Consensus 108 ~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~----~l~~i~~~~----~~~~~~A~ia~~~G~~~eAe~~~l~~g~-- 177 (244)
..|..+|..+...++++.|..+|.+.-....-. ...+..... .....+|.++..+|++++|...|.++=.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 469999999999999999999998643211000 000011111 1224588999999999999999876521
Q ss_pred HH--H----HHHHHHHhcCHHHHHHHHHh
Q psy11525 178 IF--R----AIQVSILTHNWDRALELALR 200 (244)
Q Consensus 178 ~~--~----Ai~m~~~l~~W~~Al~LA~~ 200 (244)
++ . .=..|..++++++|++..++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 11 1 13567889999999765443
No 168
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=90.60 E-value=2 Score=37.20 Aligned_cols=82 Identities=15% Similarity=0.067 Sum_probs=60.5
Q ss_pred HHHcCCHHHHHHHHhccCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhH-HHHHHHhhCCCcHHHHHHHHH
Q psy11525 88 YAASHSWPQALSLCRTLND-------DILWACLAGMATYSRDLATSEEAYAAIEQVDK-VMYINHIKGIPVKAAQQAEMY 159 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~~~-------~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~-v~~l~~i~~~~~~~~~~A~ia 159 (244)
+++.++|++|....+.... ...+-.||..+...++++.|..+|.+...-.. -.. ..+.....|.++
T Consensus 145 ~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~------~~da~~~~glaL 218 (282)
T 4f3v_A 145 YGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC------ARAIAWYLAMAR 218 (282)
T ss_dssp HHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT------HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc------cHHHHHHHHHHH
Confidence 4899999999999977521 45899999999999999999999996521000 000 012235688899
Q ss_pred HHcCCHHHHHHHHHHC
Q psy11525 160 LLGGNISEAESILLQH 175 (244)
Q Consensus 160 ~~~G~~~eAe~~~l~~ 175 (244)
..+|+.++|..+|-+.
T Consensus 219 ~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 219 RSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999999988653
No 169
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=90.30 E-value=1.5 Score=28.82 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525 107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQ 174 (244)
Q Consensus 107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~ 174 (244)
...|..+|......++++.|..+|.+.-.. -..........|.++...|++++|...|.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 457888999999999999998888753211 001111234567777777777777766644
No 170
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=90.14 E-value=4.3 Score=30.83 Aligned_cols=60 Identities=8% Similarity=-0.068 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCC
Q psy11525 109 LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHG 176 (244)
Q Consensus 109 lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g 176 (244)
.+..+|...+..++++.|+..|.+.-..+ -+..+-....|.++...|++++|...|.+.-
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--------QSRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 35677888889999999888887643110 0111223457888888899998888887763
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=90.13 E-value=2.4 Score=38.46 Aligned_cols=108 Identities=9% Similarity=-0.054 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---------------cHHHHHHHHHHHcCCHHHHHH
Q psy11525 106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---------------VKAAQQAEMYLLGGNISEAES 170 (244)
Q Consensus 106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---------------~~~~~~A~ia~~~G~~~eAe~ 170 (244)
....|..+|......++++.|..+|.+.=. ...... .....+|.++..+|++++|..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--------~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 338 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--------WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 356799999999999999999999986321 111111 123468999999999999999
Q ss_pred HHHHC-----CCHH---HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC
Q psy11525 171 ILLQH-----GLIF---RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK 221 (244)
Q Consensus 171 ~~l~~-----g~~~---~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~ 221 (244)
.|.++ +.+. ..=..|..+++|++|+...++ .++.-..........+...++
T Consensus 339 ~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99874 2221 123567889999999876544 444433344444444444333
No 172
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=89.55 E-value=1 Score=30.63 Aligned_cols=48 Identities=8% Similarity=0.027 Sum_probs=40.4
Q ss_pred HHHHHcCCHHHHHHHHhcc-----CCHH-HHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 86 HSYAASHSWPQALSLCRTL-----NDDI-LWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 86 ~~~l~~~~~~~A~~~~~~~-----~~~~-lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
..++..|+|++|.+.++.. .... .|..+|......++++.|..+|.+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4568899999999988774 4566 8999999999999999999988763
No 173
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=89.51 E-value=1.6 Score=36.47 Aligned_cols=96 Identities=10% Similarity=-0.023 Sum_probs=64.8
Q ss_pred HHHcCCHHHHHHHHhcc--------CCH----HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHH
Q psy11525 88 YAASHSWPQALSLCRTL--------NDD----ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKA 152 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~--------~~~----~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~ 152 (244)
|...|++++|....... ..+ ..+..+|......++++.|..+|.+.-+. ........ ...
T Consensus 165 y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~-----~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI-----SCRINSMALIGQLY 239 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHTTBCSSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH-----HHhcCcHHHHHHHH
Confidence 47899999988877653 121 58889999999999999999998864322 12221111 123
Q ss_pred HHHHHHHHHcCCHHHH-HHHHHHCCCHHHHHHHHHHhcCHHHH
Q psy11525 153 AQQAEMYLLGGNISEA-ESILLQHGLIFRAIQVSILTHNWDRA 194 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eA-e~~~l~~g~~~~Ai~m~~~l~~W~~A 194 (244)
...|.++..+|++++| ...| .+|+.++...+++.-+
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~------~~Al~~~~~~~~~~~~ 276 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAY------KKASFFFDILEMHAYK 276 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH------HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHH------HHHHHHHHHhCcHhhH
Confidence 4578888888888888 5544 3566666666665553
No 174
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=89.20 E-value=0.89 Score=31.71 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=39.8
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAA 132 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~ 132 (244)
|...|++++|....+.. .....|..+|......++++.|..+|.+
T Consensus 17 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 17 HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 58899999999988774 4577999999999999999999999886
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=89.20 E-value=0.86 Score=39.61 Aligned_cols=80 Identities=9% Similarity=-0.010 Sum_probs=54.9
Q ss_pred HHcCCHHHHHHHHhcc----CCH------------------HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhh
Q psy11525 89 AASHSWPQALSLCRTL----NDD------------------ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIK 146 (244)
Q Consensus 89 l~~~~~~~A~~~~~~~----~~~------------------~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~ 146 (244)
...|+|++|....+.. ... ..|..+|...+..++++.|..+|.+.= + +.
T Consensus 190 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al--------~-~~ 260 (338)
T 2if4_A 190 FKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL--------T-EE 260 (338)
T ss_dssp CSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH--------H-HC
T ss_pred HhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------H-hC
Confidence 7789999998866652 222 267788888888888887777776421 1 11
Q ss_pred C-CCcHHHHHHHHHHHcCCHHHHHHHHHHCCC
Q psy11525 147 G-IPVKAAQQAEMYLLGGNISEAESILLQHGL 177 (244)
Q Consensus 147 ~-~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~ 177 (244)
. ...-...+|.++..+|++++|...|.++=.
T Consensus 261 p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 261 EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 112235688899999999999998887743
No 176
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.82 E-value=1.4 Score=29.05 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=40.0
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
.+...|++++|....+.. .....|..+|......++++.|..+|.+.
T Consensus 18 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 358899999999988764 56788999999999999999999888764
No 177
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=88.68 E-value=7.6 Score=35.18 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=34.8
Q ss_pred cCCHH-------HHHHHHhcc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 91 SHSWP-------QALSLCRTL------NDDILWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 91 ~~~~~-------~A~~~~~~~------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
.|+++ +|..+.+.. ....+|..+|......++++.|+.+|.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 58886 777766553 35889999999999999999999999863
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.95 E-value=5.4 Score=34.47 Aligned_cols=107 Identities=7% Similarity=-0.044 Sum_probs=68.4
Q ss_pred HHHcCCHHHHHHHHhcc------CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc---HHH
Q psy11525 88 YAASHSWPQALSLCRTL------ND-----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV---KAA 153 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~------~~-----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~---~~~ 153 (244)
|...|+|++|....... .. ......++......++++.|...|...- ........... ...
T Consensus 65 y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~ 139 (434)
T 4b4t_Q 65 YVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSI-----EFAKREKRVFLKHSLSI 139 (434)
T ss_dssp HHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHH-----HHHHHSSCCSSHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HHHHHhCccHHHHHHHH
Confidence 58899999999877654 11 2234444544445567777777766532 22222222221 235
Q ss_pred HHHHHHHHcCCHHHHHHHHHHC--------CCHH------HHHHHHHHhcCHHHHHHHHH
Q psy11525 154 QQAEMYLLGGNISEAESILLQH--------GLIF------RAIQVSILTHNWDRALELAL 199 (244)
Q Consensus 154 ~~A~ia~~~G~~~eAe~~~l~~--------g~~~------~Ai~m~~~l~~W~~Al~LA~ 199 (244)
..|.+....|++++|..++.+. ..+. .-.++|..+++|++|..+-+
T Consensus 140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 199 (434)
T 4b4t_Q 140 KLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLT 199 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 6899999999999999988753 1222 22678999999999877643
No 179
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=87.91 E-value=1.3 Score=30.24 Aligned_cols=47 Identities=9% Similarity=-0.015 Sum_probs=39.8
Q ss_pred HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
.+...|+|++|....+.. .....|..+|......++++-|..+|.+.
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 13 SLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 357899999999988764 56889999999999999999998888763
No 180
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=87.77 E-value=13 Score=33.15 Aligned_cols=43 Identities=16% Similarity=0.030 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHhcc---CCHHHHHHHHHHHHH----cCCHHHHHHHHHHh
Q psy11525 91 SHSWPQALSLCRTL---NDDILWACLAGMATY----SRDLATSEEAYAAI 133 (244)
Q Consensus 91 ~~~~~~A~~~~~~~---~~~~lW~~LA~~Al~----~~~l~~A~~~y~~l 133 (244)
.+++++|.+..+.. .....+..||..... .++++.|...|.+.
T Consensus 92 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 141 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLA 141 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 78999998877653 577888899999888 78999999999764
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=87.37 E-value=2.9 Score=38.87 Aligned_cols=83 Identities=6% Similarity=-0.051 Sum_probs=59.0
Q ss_pred HHHcCCHHHHHHHHhcc-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH---
Q psy11525 88 YAASHSWPQALSLCRTL-------------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK--- 151 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~--- 151 (244)
|...|+|++|..+++.. .+-.....||......|+++.|+..|.+.- .-.+.+..-+.+
T Consensus 361 y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al-----~i~~~~lG~~Hp~~~ 435 (490)
T 3n71_A 361 LSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY-----AILLVTHGPSHPITK 435 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHTCTTSHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHHhCCCChHHH
Confidence 57899999999988763 245678889999999999999999887632 223333222221
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525 152 --AAQQAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 152 --~~~~A~ia~~~G~~~eAe~~~l~~ 175 (244)
....++..+.+|++++||.+|.++
T Consensus 436 ~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 436 DLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234566777778888888888554
No 182
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=87.34 E-value=1.9 Score=40.01 Aligned_cols=100 Identities=12% Similarity=0.112 Sum_probs=69.1
Q ss_pred CHHHHHHHHhcc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHH--HHHHHHHHcCC
Q psy11525 93 SWPQALSLCRTL------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAA--QQAEMYLLGGN 164 (244)
Q Consensus 93 ~~~~A~~~~~~~------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~--~~A~ia~~~G~ 164 (244)
++++|+++-+.+ .+...|..|-..+.+.++++.|.+.|..+... --.++... -+-..+...|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---------g~~Pd~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF---------GIQPRLRSYGPALFGFCRKGD 155 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---------TCCCCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCccceehHHHHHHHHCCC
Confidence 467888876654 46778888888888888888888777665321 01133222 22344567899
Q ss_pred HHHHHHHHHHC---CC------HHHHHHHHHHhcCHHHHHHHHHhc
Q psy11525 165 ISEAESILLQH---GL------IFRAIQVSILTHNWDRALELALRH 201 (244)
Q Consensus 165 ~~eAe~~~l~~---g~------~~~Ai~m~~~l~~W~~Al~LA~~~ 201 (244)
.++|.++|-+. |- +...|..|.+.|++++|+++-++.
T Consensus 156 ~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 99999998654 22 344588999999999999887764
No 183
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=86.88 E-value=5.6 Score=36.10 Aligned_cols=131 Identities=11% Similarity=0.054 Sum_probs=80.1
Q ss_pred HHcCCHHHHHHHHhcc-----CC-HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHH-HHH
Q psy11525 89 AASHSWPQALSLCRTL-----ND-DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEM-YLL 161 (244)
Q Consensus 89 l~~~~~~~A~~~~~~~-----~~-~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~i-a~~ 161 (244)
...|++++|..+.+.. .+ ...|..++......++++.|+.+|.+.-.... .........|.+ +..
T Consensus 332 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--------~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 332 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--------TRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--------CCTHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--------CchHHHHHHHHHHHHH
Confidence 6689999999887763 22 35899999999999999999998885422100 001111122222 224
Q ss_pred cCCHHHHHHHHHHC-----CCHH---HHHHHHHHhcCHHHHHHHHHh---cC---Cc-hhHHHHHHHHHHHHcCCcccHH
Q psy11525 162 GGNISEAESILLQH-----GLIF---RAIQVSILTHNWDRALELALR---HK---TH-IDTVLYQRKKYLDNLEKIETNE 226 (244)
Q Consensus 162 ~G~~~eAe~~~l~~-----g~~~---~Ai~m~~~l~~W~~Al~LA~~---~~---~~-~~~vl~~r~~yl~~~~~~e~~~ 226 (244)
.|++++|.++|.++ +.++ .-+++...+|+.++|..+-++ .+ +. ...+.....++....|..++..
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 78888888888754 2222 224556677888887666544 22 11 2334545566667777766555
Q ss_pred H
Q psy11525 227 K 227 (244)
Q Consensus 227 ~ 227 (244)
.
T Consensus 484 ~ 484 (530)
T 2ooe_A 484 K 484 (530)
T ss_dssp H
T ss_pred H
Confidence 3
No 184
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=86.77 E-value=1.7 Score=30.51 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=39.8
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
|...|++++|...++.. .....|..+|......++++.|..+|.+.
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 29 YAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 58899999999988774 46789999999999999999999888754
No 185
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=85.85 E-value=1.5 Score=29.64 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=40.4
Q ss_pred HHHcCCHHHHHHHHhcc-----C--CHHHHHHHHHHHHHc-CCHHHHHHHHHHhC
Q psy11525 88 YAASHSWPQALSLCRTL-----N--DDILWACLAGMATYS-RDLATSEEAYAAIE 134 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~--~~~lW~~LA~~Al~~-~~l~~A~~~y~~l~ 134 (244)
+...|++++|....+.. . ....|..+|...... ++++.|..+|.++-
T Consensus 50 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 50 LYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 48899999999887764 4 688999999999999 99999999988653
No 186
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=84.79 E-value=1.1 Score=35.54 Aligned_cols=102 Identities=13% Similarity=0.041 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH----HHHHHHHHHH
Q psy11525 91 SHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK----AAQQAEMYLL 161 (244)
Q Consensus 91 ~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~----~~~~A~ia~~ 161 (244)
.+.|++|.+.++.. .....|..+|..-+..++++-+..+.....+ -+..+++...+... .-..|.++..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~e--Ai~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQE--AITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHH--HHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 45677777777664 5788999999977666655422222111111 12333333333221 1235666665
Q ss_pred c-----------CCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHh
Q psy11525 162 G-----------GNISEAESILLQHGLIFRAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 162 ~-----------G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
+ |++++|.+.|. +|+++.-+...+.+|++++.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~------kAl~l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQ------QAVDEQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHH------HHHHHCTTCHHHHHHHHHHHT
T ss_pred hcccCcchhhhhccHHHHHHHHH------HHHHhCCCCHHHHHHHHHHHh
Confidence 5 47777777664 455555555566667666655
No 187
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=84.67 E-value=22 Score=32.01 Aligned_cols=48 Identities=10% Similarity=0.019 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHC----------CCHHHHH------HHHHHhcCHHHHHHHHHh
Q psy11525 153 AQQAEMYLLGGNISEAESILLQH----------GLIFRAI------QVSILTHNWDRALELALR 200 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eAe~~~l~~----------g~~~~Ai------~m~~~l~~W~~Al~LA~~ 200 (244)
...|.++..+|++++|+.+|.++ .+|+-|. ..|...|+|++|+.+-++
T Consensus 333 ~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 333 DCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34788888999999999998875 3444443 346778888888776544
No 188
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=84.20 E-value=16 Score=30.03 Aligned_cols=80 Identities=13% Similarity=0.032 Sum_probs=51.4
Q ss_pred HHHcCCHHHHHHHHhcc--------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc---HH
Q psy11525 88 YAASHSWPQALSLCRTL--------ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV---KA 152 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~--------~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~---~~ 152 (244)
|...|++++|....+.. .. ...|..+|......++++.|...|.+. +........... ..
T Consensus 165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a-----l~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA-----IEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHTTBCTTHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHcCcHHHHHHHH
Confidence 58889999998877663 11 246778898888999998888887753 222222222221 23
Q ss_pred HHHHHHHHHcC-CHHHHHHHH
Q psy11525 153 AQQAEMYLLGG-NISEAESIL 172 (244)
Q Consensus 153 ~~~A~ia~~~G-~~~eAe~~~ 172 (244)
...|.++..+| .+++|.+.|
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHH
Confidence 45677777777 356666555
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=83.97 E-value=1.5 Score=40.08 Aligned_cols=78 Identities=9% Similarity=-0.094 Sum_probs=53.0
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHH--HH
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEM--YL 160 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~i--a~ 160 (244)
|...|++++|...++.. .....|..+|......++++.|+.+|.+.- +.--...+.....+.+ +.
T Consensus 50 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al--------~~~p~~~~~~~~l~~~~~~~ 121 (477)
T 1wao_1 50 YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV--------KVKPHDKDAKMKYQECNKIV 121 (477)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------HHSTTCTTHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHH
Confidence 58999999999988774 567899999999999999999999987632 1111112222334444 66
Q ss_pred HcCCHHHHHHHHH
Q psy11525 161 LGGNISEAESILL 173 (244)
Q Consensus 161 ~~G~~~eAe~~~l 173 (244)
..|++++|.+.|.
T Consensus 122 ~~g~~~~A~~~~~ 134 (477)
T 1wao_1 122 KQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHCCC-----
T ss_pred HHHHHHHHhcccc
Confidence 6788888888887
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=83.46 E-value=3 Score=29.50 Aligned_cols=46 Identities=13% Similarity=0.038 Sum_probs=40.0
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
|...|++++|....+.. .....|..+|......++++.|..+|.+.
T Consensus 37 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 37 FRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 48899999999988774 56889999999999999999999888753
No 191
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=83.15 E-value=3.7 Score=37.49 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=19.6
Q ss_pred CeEEEEEcCCccccCcccceeeeEeeccCCCCCCC-eEEeEeCCEEEEEe
Q psy11525 20 SALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSP-SIVSFVKNHLTIRR 68 (244)
Q Consensus 20 ~~l~vw~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~v~f~g~~v~~~~ 68 (244)
..+.+-+||..++++ .+=.| ..+.|.|+.+.++.
T Consensus 192 ~~~g~gl~p~~s~~N---------------HsC~PN~~~~~~~~~~~~~a 226 (433)
T 3qww_A 192 SHLGSAIFPDVALMN---------------HSCCPNVIVTYKGTLAEVRA 226 (433)
T ss_dssp CEEEEEECTTGGGSE---------------ECSSCSEEEEEETTEEEEEE
T ss_pred cceeEEecccccccC---------------CCCCCCceEEEcCCEEEEEe
Confidence 345567788877542 22222 23467888777765
No 192
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=83.13 E-value=6 Score=34.62 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=34.7
Q ss_pred HHcCCHHHHHHHHhcc--------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 89 AASHSWPQALSLCRTL--------------NDDILWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 89 l~~~~~~~A~~~~~~~--------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
...|++++|.+..+.. ..-..|..+|......++++.|+..|.+.
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka 120 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV 120 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5689999998766431 12457899999999999999998888753
No 193
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=83.11 E-value=5.4 Score=36.93 Aligned_cols=86 Identities=10% Similarity=-0.010 Sum_probs=62.5
Q ss_pred cHHHHHHHHHcCCHHHHHHHHhcc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHH--
Q psy11525 81 YISVLHSYAASHSWPQALSLCRTL------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKA-- 152 (244)
Q Consensus 81 ~~~~l~~~l~~~~~~~A~~~~~~~------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~-- 152 (244)
|...+..|...|++++|.++.+.+ .+...|..|-..+.+.++++.|.+.|..+.+- --.++..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---------G~~Pd~~ty 178 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES---------EVVPEEPEL 178 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------TCCCCHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc---------CCCCCHHHH
Confidence 556667789999999999998876 46788888888888888888888887765311 1123322
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHC
Q psy11525 153 AQQAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eAe~~~l~~ 175 (244)
..+-..+...|+.++|.++|.+.
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHH
Confidence 23445666788999998888764
No 194
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=82.05 E-value=15 Score=28.85 Aligned_cols=134 Identities=11% Similarity=0.000 Sum_probs=77.1
Q ss_pred HHHcCCHHHHHHHHhcc---CCHHHHHHHHHHHHHcC----CHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHH
Q psy11525 88 YAASHSWPQALSLCRTL---NDDILWACLAGMATYSR----DLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYL 160 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~---~~~~lW~~LA~~Al~~~----~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~ 160 (244)
|...+++++|.+..+.. .+...+..||..... + +++.|.+.|.+.-+. ..+.-...+|.++.
T Consensus 28 ~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~ 96 (212)
T 3rjv_A 28 WVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLV 96 (212)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHH
Confidence 35678888888766553 567778888888776 5 788888777764111 11111234566665
Q ss_pred H----cCCHHHHHHHHHHCCCHH------HH----HHHHHH----hcCHHHHHHHHHhc---CCchhHHHHHHHHHHHHc
Q psy11525 161 L----GGNISEAESILLQHGLIF------RA----IQVSIL----THNWDRALELALRH---KTHIDTVLYQRKKYLDNL 219 (244)
Q Consensus 161 ~----~G~~~eAe~~~l~~g~~~------~A----i~m~~~----l~~W~~Al~LA~~~---~~~~~~vl~~r~~yl~~~ 219 (244)
. .+++++|.+.|.++-... .| =.+|.. ..++++|+..-++- +.+..-...+-.-|+...
T Consensus 97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~ 176 (212)
T 3rjv_A 97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGE 176 (212)
T ss_dssp CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCB
T ss_pred cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCC
Confidence 5 678888888888763322 22 234555 56788887765543 112222223333444433
Q ss_pred C------CcccHHHHHhcc
Q psy11525 220 E------KIETNEKFLRLQ 232 (244)
Q Consensus 220 ~------~~e~~~~f~~~~ 232 (244)
| ..++...|+++.
T Consensus 177 gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 177 KGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp TTTBCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 3 245555566553
No 195
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=81.73 E-value=2.3 Score=28.92 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=31.9
Q ss_pred CCCCCCeEEeEeCCEEEEEecCCcEEEeecCccHHHHHHHH
Q psy11525 49 EFGKSPSIVSFVKNHLTIRRYDGTVINYPISPYISVLHSYA 89 (244)
Q Consensus 49 ~~~~~~~~v~f~g~~v~~~~~~G~~~~~~~~p~~~~l~~~l 89 (244)
.|....+++++.+|+|.++..||..+.+.+..++..=.+|+
T Consensus 14 ~F~VeA~flg~~dgki~LhK~nGv~I~VP~~klS~~D~~yv 54 (68)
T 2hbp_A 14 TFKVDAEFIGCAKGKIHLHKANGVKIAVAADKLSNEDLAYV 54 (68)
T ss_dssp CCEEEEEEEEEETTEEEEECTTSCEEEEETTSBCHHHHHHH
T ss_pred CeEEEEEEEEEeCCEEEEEecCCcEEEeEhHHcCHHHHHHH
Confidence 45556678899999999999999999988776665544453
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.39 E-value=7.7 Score=33.47 Aligned_cols=107 Identities=6% Similarity=-0.003 Sum_probs=67.2
Q ss_pred HHHHHcCCHHHHHHHHhcc----C------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHH
Q psy11525 86 HSYAASHSWPQALSLCRTL----N------------------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYIN 143 (244)
Q Consensus 86 ~~~l~~~~~~~A~~~~~~~----~------------------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~ 143 (244)
.+++..|++++|.+..... . .+.....||......++++-|...|..+-.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~-------- 83 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE-------- 83 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH--------
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence 4568999999999987654 0 012356777777788888877777765421
Q ss_pred HhhCCCcH------HHHHHHHHHHcCCHHHHHHHHHHCCCHH--------------HHHHHHHHhcCHHHHHHHHHh
Q psy11525 144 HIKGIPVK------AAQQAEMYLLGGNISEAESILLQHGLIF--------------RAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 144 ~i~~~~~~------~~~~A~ia~~~G~~~eAe~~~l~~g~~~--------------~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
......+. ....+.+....|++++|..++.++-.+. .--.+|.+.|++++|+.+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 11122221 1224555556788888888776652221 225678888899988877654
No 197
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=79.44 E-value=5 Score=26.93 Aligned_cols=54 Identities=11% Similarity=-0.028 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-Cc-HHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525 112 CLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PV-KAAQQAEMYLLGGNISEAESILLQ 174 (244)
Q Consensus 112 ~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~-~~~~~A~ia~~~G~~~eAe~~~l~ 174 (244)
..|...+..++++.|..+|.+.-. .... .. .....|.++...|++++|.+.|.+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~---------~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ---------TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH---------HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---------HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345666667777777776654311 1111 11 223467777777777777776654
No 198
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=76.38 E-value=8.4 Score=30.45 Aligned_cols=119 Identities=16% Similarity=0.104 Sum_probs=73.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcC----CHHHHHHHHHHC---
Q psy11525 103 TLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGG----NISEAESILLQH--- 175 (244)
Q Consensus 103 ~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G----~~~eAe~~~l~~--- 175 (244)
...+...+..||......++++.|...|.+.-+. ..++-...+|.++.. | ++++|.+.|.++
T Consensus 14 ~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~ 82 (212)
T 3rjv_A 14 EAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA 82 (212)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC
Confidence 3466788889999999999999999999864211 111122345666665 6 899999998876
Q ss_pred CCHHHHH---HHHHH----hcCHHHHHHHHHhcC---Cc---hhHHHHHHHHHHHHc----CCcccHHHHHhcc
Q psy11525 176 GLIFRAI---QVSIL----THNWDRALELALRHK---TH---IDTVLYQRKKYLDNL----EKIETNEKFLRLQ 232 (244)
Q Consensus 176 g~~~~Ai---~m~~~----l~~W~~Al~LA~~~~---~~---~~~vl~~r~~yl~~~----~~~e~~~~f~~~~ 232 (244)
|.+.... .+|.. ..++++|+++-++-. +. .+-...+-.-|+... ...++.+.|+++.
T Consensus 83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 4444333 23444 568888888766633 21 233333334444422 2356666666664
No 199
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=75.23 E-value=23 Score=30.78 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHC-------CCHH---HHHHHHHHhcCHHHHHHHHHhc---CC-----chhHHHHHHHH
Q psy11525 153 AQQAEMYLLGGNISEAESILLQH-------GLIF---RAIQVSILTHNWDRALELALRH---KT-----HIDTVLYQRKK 214 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eAe~~~l~~-------g~~~---~Ai~m~~~l~~W~~Al~LA~~~---~~-----~~~~vl~~r~~ 214 (244)
...|.++...|++++|-+++.+. +..+ .+++++..+|+.+.|.++.++. ++ .-..++.+..-
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence 56889999999999999999887 3322 5589999999999999998653 34 13455666666
Q ss_pred HH--HHc--CCcccHHHHHhccc
Q psy11525 215 YL--DNL--EKIETNEKFLRLQS 233 (244)
Q Consensus 215 yl--~~~--~~~e~~~~f~~~~~ 233 (244)
|. ... ...++...|.+..+
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~ 206 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQ 206 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHT
T ss_pred HHHHHhCCccHHHHHHHHHHHHH
Confidence 44 333 23566666666543
No 200
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=74.81 E-value=5.1 Score=36.38 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=36.5
Q ss_pred HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCCc-h-hHHHHHHHHHHHHc
Q psy11525 169 ESILLQHGLIFRAIQVSILTHNWDRALELALRHKTH-I-DTVLYQRKKYLDNL 219 (244)
Q Consensus 169 e~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~~-~-~~vl~~r~~yl~~~ 219 (244)
-.-.+=.|+++.|++++.+.++|-+|+-||...++. . +. -+++|+...
T Consensus 150 I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~gg~el~~~~---vq~~Y~~k~ 199 (399)
T 2pm7_A 150 ISKNLVSGNIKSAVKNSLENDLMMEAMVIALDSNNERLKES---VKNAYFAKY 199 (399)
T ss_dssp HHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTTCCCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHCCChHHHHHHHHhcCHHHHHHH---HHHHHHHhc
Confidence 333444699999999999999999999999988875 3 33 455677544
No 201
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=74.13 E-value=48 Score=29.68 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCCc--hhHHHHHHHHHH
Q psy11525 153 AQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTH--IDTVLYQRKKYL 216 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~~--~~~vl~~r~~yl 216 (244)
...|.++.+.|++++|.+.|.+ |++ ++=.++.+.+++..-.+ ++.|.++=.+|+
T Consensus 314 ~llG~~~~~~G~~~eA~e~~~~------Alr----L~P~~~t~~~~~~l~F~sn~~~i~~~~~~~~ 369 (372)
T 3ly7_A 314 VLLGKVYEMKGMNREAADAYLT------AFN----LRPGANTLYWIENGIFQTSVPYVVPYLDKFL 369 (372)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH------HHH----HSCSHHHHHHHHHSSSCCCHHHHCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH------HHh----cCCCcChHHHHhCceeecchhhhHHHHHhcc
Confidence 3567777788888877777754 333 33445567777776643 666666655555
No 202
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=73.92 E-value=4.2 Score=37.46 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=38.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCCc-hhHHHHHHHHHHH
Q psy11525 167 EAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTH-IDTVLYQRKKYLD 217 (244)
Q Consensus 167 eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~~-~~~vl~~r~~yl~ 217 (244)
+--.-++..|+.++|+++..+-++|-.|+-||...++. .+.|. ++|+.
T Consensus 155 ~~I~~~Ll~G~~e~Av~~al~~~lwa~ALlLAs~~g~e~~~~V~---~~y~~ 203 (441)
T 3mzk_B 155 MRVLAFLQTGNHDEALRLALSKRDYAIALLVGSLMGKDRWSEVI---QKYLY 203 (441)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHH---HHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCcHHHHHHHHHhcCHHHHHHHH---HHHHH
Confidence 34556788899999999999999999999999888865 44433 45664
No 203
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.82 E-value=14 Score=32.36 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=56.6
Q ss_pred HHHHHHHcCCHHHHHHHHhccC----CHHHHHHHHHHH------HHcCCHH-------HHHHHHHHh--CChhHHHHHHH
Q psy11525 84 VLHSYAASHSWPQALSLCRTLN----DDILWACLAGMA------TYSRDLA-------TSEEAYAAI--EQVDKVMYINH 144 (244)
Q Consensus 84 ~l~~~l~~~~~~~A~~~~~~~~----~~~lW~~LA~~A------l~~~~l~-------~A~~~y~~l--~d~~~v~~l~~ 144 (244)
...+|+..++|++|..++..+. ...-|.+.+..| +...+.. -....+..+ .++.+..++++
T Consensus 39 l~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ 118 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITG 118 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHH
Confidence 4445677888888888776651 112233322222 2222111 112222222 23456666666
Q ss_pred hhCC---------Cc--HHHHHHHHHHHcCCHHHHHHHHHHCC--CHHHHHHHHH
Q psy11525 145 IKGI---------PV--KAAQQAEMYLLGGNISEAESILLQHG--LIFRAIQVSI 186 (244)
Q Consensus 145 i~~~---------~~--~~~~~A~ia~~~G~~~eAe~~~l~~g--~~~~Ai~m~~ 186 (244)
+..- .+ -+...|..+...|++.+|+.+|+.+. .++.-.+|-.
T Consensus 119 ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 119 MNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLW 173 (312)
T ss_dssp HHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHH
Confidence 6521 12 24568999999999999999999665 3555555544
No 204
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=71.06 E-value=27 Score=27.79 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHcCCHHHHHHHHhccC-----CH---------HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525 80 PYISVLHSYAASHSWPQALSLCRTLN-----DD---------ILWACLAGMATYSRDLATSEEAYAA 132 (244)
Q Consensus 80 p~~~~l~~~l~~~~~~~A~~~~~~~~-----~~---------~lW~~LA~~Al~~~~l~~A~~~y~~ 132 (244)
-+.+.+...++.+.|+.|.-+++++. ++ ..--.+|..-...+++.-|+..|.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 46678888899999999999999851 11 1456788999999999999999987
No 205
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=70.87 E-value=5.8 Score=34.18 Aligned_cols=48 Identities=4% Similarity=0.133 Sum_probs=41.5
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQ 135 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d 135 (244)
|+..|+|++|...|... .....|..+|......++++.|+.+|.+.-.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 37889999999999875 5678999999999999999999999987643
No 206
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=64.98 E-value=25 Score=31.70 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=38.3
Q ss_pred HcCCHHHHHHHHhccCCHH--HHH----HHHHHHHHcCCHHHHHHHHHHhCChhHH
Q psy11525 90 ASHSWPQALSLCRTLNDDI--LWA----CLAGMATYSRDLATSEEAYAAIEQVDKV 139 (244)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~--lW~----~LA~~Al~~~~l~~A~~~y~~l~d~~~v 139 (244)
...+|.+++.+.+.-.++. .|. .||..-...++..-|..||..-|+++++
T Consensus 225 ~l~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~ 280 (399)
T 2pm7_A 225 DVSQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKV 280 (399)
T ss_dssp CGGGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHH
T ss_pred ChhhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHH
Confidence 3457777777776654444 554 6777788889999999999999998876
No 207
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=58.34 E-value=65 Score=31.07 Aligned_cols=101 Identities=11% Similarity=0.088 Sum_probs=66.8
Q ss_pred cHHHHHHH---HHcCCHHHHHHHHhcc--CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChh--H---HHHHHH-
Q psy11525 81 YISVLHSY---AASHSWPQALSLCRTL--ND-----DILWACLAGMATYSRDLATSEEAYAAIEQVD--K---VMYINH- 144 (244)
Q Consensus 81 ~~~~l~~~---l~~~~~~~A~~~~~~~--~~-----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~--~---v~~l~~- 144 (244)
+...+-+| .+..+-.+|+++--.+ .. ...+.++.+..++.++++ .-+|++. + =..|++
T Consensus 356 ~arLI~~Yt~~F~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~------~LLG~i~~dG~r~~G~i~~~ 429 (661)
T 2qx5_A 356 FANILANYTKSFRYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFT------VLLGKIGRDGARIPGVIEER 429 (661)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHH------HHHCEECTTSCEECCHHHHT
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHH------HHcCCcCCCCCcCcchHHHh
Confidence 45556666 6778888998865554 22 466888999999998774 3345421 1 122333
Q ss_pred --hhCCCcH-------HHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHH
Q psy11525 145 --IKGIPVK-------AAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSIL 187 (244)
Q Consensus 145 --i~~~~~~-------~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~ 187 (244)
+.++.+. ....|..+...|++++|-.+|.-+|+++.|+++...
T Consensus 430 ~~li~l~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~ 481 (661)
T 2qx5_A 430 QPLLHVRDEKEFLHTITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNS 481 (661)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3344431 134677788889999999999999988888887654
No 208
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=55.29 E-value=59 Score=28.65 Aligned_cols=25 Identities=20% Similarity=0.237 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHCCC
Q psy11525 153 AQQAEMYLLGGNISEAESILLQHGL 177 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eAe~~~l~~g~ 177 (244)
...|.++...|++.+|+.+|+.+.+
T Consensus 140 ~~ig~~~~~e~~~~~Ae~H~ilg~~ 164 (336)
T 3lpz_A 140 HVVGTLYVEEGEFEAAEKHLVLGTK 164 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTSCT
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCC
Confidence 4579999999999999999997665
No 209
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=52.67 E-value=58 Score=26.17 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=24.4
Q ss_pred cceeeecCCCceEEEEeCCeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw~~~~ 29 (244)
|.+++|+++...+++.+++.+.+|-...
T Consensus 54 v~~~~~~~~~~~l~~~~dg~i~iw~~~~ 81 (337)
T 1gxr_A 54 VCAVTISNPTRHVYTGGKGCVKVWDISH 81 (337)
T ss_dssp CCEEEECSSSSEEEEECBSEEEEEETTS
T ss_pred eEEEEEecCCcEEEEcCCCeEEEEECCC
Confidence 6789999999999998899999996654
No 210
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.38 E-value=58 Score=29.40 Aligned_cols=81 Identities=10% Similarity=-0.001 Sum_probs=52.8
Q ss_pred HHHcCCHHHHHHHHhccCCH-----------HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH-----
Q psy11525 88 YAASHSWPQALSLCRTLNDD-----------ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK----- 151 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~~~~-----------~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~----- 151 (244)
|.+.|+|.+|.++.+.+..+ ..+..-.+.++..+|+.-|...+.++.. .-......+
T Consensus 147 ~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~-------~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 147 KKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK-------KTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HHHHSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------hhcccCCcHHHHHH
Confidence 47899999999998886322 3555566666666666666655544310 001111221
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525 152 -AAQQAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 152 -~~~~A~ia~~~G~~~eAe~~~l~~ 175 (244)
....|.+++..++|.+|.+.|..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 245789999999999999988765
No 211
>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei}
Probab=50.41 E-value=22 Score=32.48 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=34.3
Q ss_pred HHHHcCCHHHHHHHHHHC------CCHHHHHHHHHHhcCHHHHHHHH
Q psy11525 158 MYLLGGNISEAESILLQH------GLIFRAIQVSILTHNWDRALELA 198 (244)
Q Consensus 158 ia~~~G~~~eAe~~~l~~------g~~~~Ai~m~~~l~~W~~Al~LA 198 (244)
.+++.|++++|..+++.. ....+|.+.+.+-++|++|+++.
T Consensus 187 ~~ll~g~~~~Av~lil~~~~~~e~~~~~~ar~~~~~~gd~~~al~~~ 233 (446)
T 1z2z_A 187 KAIVEGNFEKAALLYIAEPFPEEPEETKNARQFVKDTLDFKEGLKTY 233 (446)
T ss_dssp HHHHHTCHHHHHHHHHSCCCTTSCTTHHHHHHHHHHHCCHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHhcCCCcccCHHHHHHHHHHHHcCCHHHHHHHC
Confidence 566779999999999963 46688888999999999998864
No 212
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=47.41 E-value=93 Score=24.73 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=21.6
Q ss_pred cceeeecCCCceEEEEe-CCeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILAAMQ-DSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~-~~~l~vw~~~~ 29 (244)
|.+++|+++.+.|++.+ |+.+.+|-...
T Consensus 14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 42 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDK 42 (351)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECS
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEECCC
Confidence 67899999988666654 78899996554
No 213
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.32 E-value=36 Score=30.52 Aligned_cols=80 Identities=16% Similarity=0.051 Sum_probs=48.0
Q ss_pred HHHcCCHHHHHHHHhccC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHH------H
Q psy11525 88 YAASHSWPQALSLCRTLN--------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKA------A 153 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~~--------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~------~ 153 (244)
|.+.|+++.|.+..+.+. .=.+|-...+.++..+|...|...+.++.. + +...++.. .
T Consensus 141 ~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~------~--~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 141 YAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS------M--IEKGGDWERRNRYKT 212 (429)
T ss_dssp HHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------H--HTTCCCTHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH------h--hhcCCCHHHHHHHHH
Confidence 467777777777665541 124555566666666776666655544321 1 11112211 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHC
Q psy11525 154 QQAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 154 ~~A~ia~~~G~~~eAe~~~l~~ 175 (244)
..|.+.+..++|.+|.+.|+.+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 3577778889999999999874
No 214
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=46.31 E-value=85 Score=26.66 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=20.9
Q ss_pred cceeeecCCCceEEEE-eCCeEEEEEcC
Q psy11525 2 VQSICWNTDVNILAAM-QDSALCVWFFP 28 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~-~~~~l~vw~~~ 28 (244)
|.+++|+++.+.|++. .++.+.+|-..
T Consensus 137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 6789999988777665 57889998543
No 215
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=45.37 E-value=87 Score=25.59 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=21.8
Q ss_pred cceeeecCCCceEEEE-eCCeEEEEEcC
Q psy11525 2 VQSICWNTDVNILAAM-QDSALCVWFFP 28 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~-~~~~l~vw~~~ 28 (244)
|.+++|+++.+.|++. .|+.+.+|-..
T Consensus 14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 41 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATCSSDKTIKIFEVE 41 (379)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCcEEEEecC
Confidence 6789999998877766 57889999654
No 216
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=43.57 E-value=43 Score=22.81 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHC----CCHHHHHHHHHH
Q psy11525 152 AAQQAEMYLLGGNISEAESILLQH----GLIFRAIQVSIL 187 (244)
Q Consensus 152 ~~~~A~ia~~~G~~~eAe~~~l~~----g~~~~Ai~m~~~ 187 (244)
+..+|+.++..|++++|..+|-++ +.|...+.+|+.
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 356888888999999888877663 777777777764
No 217
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=43.33 E-value=1.1e+02 Score=24.64 Aligned_cols=28 Identities=14% Similarity=0.393 Sum_probs=21.6
Q ss_pred cceeeecCC-CceEEE-EeCCeEEEEEcCC
Q psy11525 2 VQSICWNTD-VNILAA-MQDSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~-~~vlv~-~~~~~l~vw~~~~ 29 (244)
|++++|+|+ ++.|+. ..|+++.+|=..+
T Consensus 41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~ 70 (340)
T 4aow_A 41 VTQIATTPQFPDMILSASRDKTIIMWKLTR 70 (340)
T ss_dssp EEEEEECTTCTTEEEEEETTSCEEEEEECC
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 788999987 687775 5578999995443
No 218
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=42.98 E-value=92 Score=22.47 Aligned_cols=51 Identities=6% Similarity=-0.027 Sum_probs=32.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHH--HHHHHHHHH----cCCHHHHHHHHHHC
Q psy11525 113 LAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKA--AQQAEMYLL----GGNISEAESILLQH 175 (244)
Q Consensus 113 LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~--~~~A~ia~~----~G~~~eAe~~~l~~ 175 (244)
||........++.|.+.|.+. .+..+.. ...|.++.. .+++++|.+.|.++
T Consensus 31 lg~~y~~g~~~~~A~~~~~~A------------a~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 87 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKA------------CELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKA 87 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHH------------HHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHH------------HcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 777777777776665555532 2222222 346777776 67888888888765
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=41.96 E-value=8.1 Score=36.65 Aligned_cols=95 Identities=11% Similarity=0.107 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHH
Q psy11525 106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVS 185 (244)
Q Consensus 106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~ 185 (244)
....=..|=...++.-|++..+.+--.-.+++.+...+++++.+-.+- -+-|..+|.+++++..+|+++
T Consensus 409 ~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eF-----------RrIAA~LYkkn~rw~qsi~l~ 477 (624)
T 3lvg_A 409 NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEF-----------RRIAAYLFKGNNRWKQSVELC 477 (624)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHH-----------HHHHHHHHHTTCHHHHHSSCS
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHH-----------HHHHHHHHHhcccHHHHHHHH
Confidence 344555555555666666555555555566666666666666543332 245778999999999999999
Q ss_pred HHhcCHHHHHHHHHhcC-Cc-hhHHHHH
Q psy11525 186 ILTHNWDRALELALRHK-TH-IDTVLYQ 211 (244)
Q Consensus 186 ~~l~~W~~Al~LA~~~~-~~-~~~vl~~ 211 (244)
..-+.|.+|++.|..-+ +. ++++|.+
T Consensus 478 KkDklykDAietAa~S~~~elaeeLL~y 505 (624)
T 3lvg_A 478 KKDSLYKDAMQYASESKDTELAEELLQW 505 (624)
T ss_dssp STTCCTTGGGTTTTTCCCTTHHHHHHHH
T ss_pred HhcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999997665 44 5665543
No 220
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=41.66 E-value=6.5 Score=37.40 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=19.4
Q ss_pred CCHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHH
Q psy11525 92 HSWPQALSLCRTL----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVM 140 (244)
Q Consensus 92 ~~~~~A~~~~~~~----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~ 140 (244)
.+.+.++++|... ..+..-+.+|..++..+++-.|.-||++-|++++|.
T Consensus 517 dd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~geAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 517 DDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNIIESIANFSRAGKYELVK 569 (570)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHHHHHHHHHHcCChhhcc
Confidence 4577888888885 468899999999999999999999999999998875
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=38.36 E-value=2 Score=40.72 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=41.6
Q ss_pred HHHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525 88 YAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAA 132 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~ 132 (244)
++..|+|+.|+..|++.++..-|+.....|+..+++..|..|-..
T Consensus 180 LV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLn 224 (624)
T 3lvg_A 180 LVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLH 224 (624)
T ss_dssp SSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcch
Confidence 378899999999999999999999999999999999999988654
No 222
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=37.31 E-value=1.1e+02 Score=25.06 Aligned_cols=27 Identities=15% Similarity=0.349 Sum_probs=21.9
Q ss_pred cceeeecCCCceEEEE-eCCeEEEEEcC
Q psy11525 2 VQSICWNTDVNILAAM-QDSALCVWFFP 28 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~-~~~~l~vw~~~ 28 (244)
|.+++|+++.+.|++. .++.+.+|-..
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~ 38 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKS 38 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 6789999999888776 78899998543
No 223
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=35.62 E-value=1.6e+02 Score=23.70 Aligned_cols=28 Identities=21% Similarity=0.504 Sum_probs=21.5
Q ss_pred cceeeecCCCceEEEE-eCCeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILAAM-QDSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~-~~~~l~vw~~~~ 29 (244)
|++++|+++.+.|++. .++.+.+|-...
T Consensus 35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 63 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLN 63 (369)
T ss_dssp EEEEEECTTSCEEEEEESSSCEEEEETTT
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCCC
Confidence 6789999998876665 578899995443
No 224
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=34.98 E-value=51 Score=31.82 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=30.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHh
Q psy11525 166 SEAESILLQHGLIFRAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 166 ~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
.+|..-.-..|++.+||.+|.-.+++++|+++..+
T Consensus 447 ~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~ 481 (661)
T 2qx5_A 447 EQAARRADEDGRIYDSILLYQLAEEYDIVITLVNS 481 (661)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45667777899999999999999999999998765
No 225
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=34.71 E-value=25 Score=30.04 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=23.0
Q ss_pred cceeeecCCCceEEEEeCCeEEEEEc
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVWFF 27 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw~~ 27 (244)
|.+++|.++..++++..|+++.+|=.
T Consensus 85 v~~~~~s~d~~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 85 VADLTWVGERGILVASDSGAVELWEL 110 (344)
T ss_dssp EEEEEEETTTEEEEEETTSEEEEEEE
T ss_pred EEEEEEeCCCeEEEEECCCEEEEEec
Confidence 67899999999999999999999943
No 226
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=34.59 E-value=36 Score=26.67 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=22.9
Q ss_pred cceeeecCCCceEEEEeCCeEEEEEcC
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVWFFP 28 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw~~~ 28 (244)
+.+++|+|+.+.+++..++.+.+|-..
T Consensus 44 v~~~~~spdg~~l~~~~~~~i~~~d~~ 70 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNSEGLLYRLSLA 70 (297)
T ss_dssp CEEEEECTTSSEEEEEETTEEEEEESS
T ss_pred eEeeEECCCCCEEEEEcCCeEEEEeCC
Confidence 578999999999999899999988543
No 227
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=34.34 E-value=1.1e+02 Score=24.62 Aligned_cols=26 Identities=4% Similarity=0.014 Sum_probs=20.1
Q ss_pred cceeeecCCCc--eEEEEeCCeEEEEEc
Q psy11525 2 VQSICWNTDVN--ILAAMQDSALCVWFF 27 (244)
Q Consensus 2 v~~v~W~~~~~--vlv~~~~~~l~vw~~ 27 (244)
|.+++|+++.+ ++++..++.+.+|-.
T Consensus 59 v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 59 LLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp EEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred eEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 67899999888 555566889999843
No 228
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=34.27 E-value=32 Score=29.47 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.3
Q ss_pred cceeeecCCCceEEEEeCCeEEEEEcC
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVWFFP 28 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw~~~ 28 (244)
|.+++|+++.+.|++.+|+.+.+|-..
T Consensus 180 v~~~~~~~~~~~l~s~~d~~i~iwd~~ 206 (447)
T 3dw8_B 180 INSISINSDYETYLSADDLRINLWHLE 206 (447)
T ss_dssp CCEEEECTTSSEEEEECSSEEEEEETT
T ss_pred eEEEEEcCCCCEEEEeCCCeEEEEECC
Confidence 678999999998888899999999654
No 229
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=33.84 E-value=1.1e+02 Score=24.16 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=20.8
Q ss_pred cceeeecCCCceEEE-EeCCeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILAA-MQDSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv~-~~~~~l~vw~~~~ 29 (244)
|.+++|+++.+.+++ ..++.+.+|-...
T Consensus 62 v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 62 LNSVCYDSEKELLLFGGKDTMINGVPLFA 90 (313)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTC
T ss_pred EEEEEECCCCCEEEEecCCCeEEEEEeee
Confidence 678999998876655 5578888886544
No 230
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=33.61 E-value=2.3e+02 Score=25.21 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=46.1
Q ss_pred HHHcCCHHHHHHHHhcc-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHH-HHHhh----CC-CcH---
Q psy11525 88 YAASHSWPQALSLCRTL-------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMY-INHIK----GI-PVK--- 151 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~-l~~i~----~~-~~~--- 151 (244)
|++.|+|.+|.++...+ +.+ ..|-+..+. -.+.|..++|+.+++. +.... .+ .++
T Consensus 109 ~~~~~~y~~a~~~i~~l~~~~~~~dd~---~~llev~ll------e~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 109 YFDTALYTEALALGAQLLRELKKLDDK---NLLVEVQLL------ESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSSCT---HHHHHHHHH------HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccccc---hhHHHHHHH------HHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 58999999997766554 211 111111111 2345666666666642 11111 11 222
Q ss_pred ---HHHHHHHHH-HcCCHHHHHHHHHHC
Q psy11525 152 ---AAQQAEMYL-LGGNISEAESILLQH 175 (244)
Q Consensus 152 ---~~~~A~ia~-~~G~~~eAe~~~l~~ 175 (244)
....|.+.+ ..|+|++|...|.++
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 234678888 899999999999986
No 231
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=33.18 E-value=21 Score=30.45 Aligned_cols=25 Identities=28% Similarity=0.622 Sum_probs=22.3
Q ss_pred cceeeecCCCceEEEEeCCeEEEEE
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVWF 26 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw~ 26 (244)
|.+++|.++..++++..++++.+|=
T Consensus 97 V~~~~~s~d~~~l~~s~dg~v~lWd 121 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGAVELWE 121 (357)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEC-
T ss_pred EEEEEEcCCCCEEEEECCCEEEEee
Confidence 6789999999999999999999983
No 232
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=32.40 E-value=36 Score=28.44 Aligned_cols=28 Identities=4% Similarity=0.119 Sum_probs=23.3
Q ss_pred cceeeecCCCceEEEEeCCeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw~~~~ 29 (244)
|.+++|+++...|++.+++++.+|=..+
T Consensus 217 v~~l~fs~~g~~l~s~~~~~v~iwd~~~ 244 (343)
T 3lrv_A 217 IKEVKFADNGYWMVVECDQTVVCFDLRK 244 (343)
T ss_dssp EEEEEECTTSSEEEEEESSBEEEEETTS
T ss_pred EEEEEEeCCCCEEEEEeCCeEEEEEcCC
Confidence 6789999999999888888999995433
No 233
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=31.73 E-value=58 Score=28.03 Aligned_cols=28 Identities=21% Similarity=0.498 Sum_probs=21.6
Q ss_pred cceeeecCCCceEE-EEeCCeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILA-AMQDSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv-~~~~~~l~vw~~~~ 29 (244)
|++++|+++.+.|+ +..|+++.+|-...
T Consensus 150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEcCC
Confidence 78999999987665 46688999995443
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=31.64 E-value=1.1e+02 Score=26.74 Aligned_cols=47 Identities=17% Similarity=0.163 Sum_probs=41.5
Q ss_pred HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q psy11525 88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE 134 (244)
Q Consensus 88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~ 134 (244)
+++.|++++|...++.+ -.+..|..|-......++-..|.+.|.++.
T Consensus 181 ~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 181 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 38899999999887775 368899999999999999999999999876
No 235
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=31.03 E-value=1.1e+02 Score=20.85 Aligned_cols=41 Identities=7% Similarity=-0.001 Sum_probs=34.4
Q ss_pred HHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q psy11525 94 WPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE 134 (244)
Q Consensus 94 ~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~ 134 (244)
.++|..+.+.. ++..-+-.||..+.+.++++.|...|.++-
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57777776664 678899999999999999999999998754
No 236
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=30.78 E-value=2e+02 Score=23.23 Aligned_cols=28 Identities=21% Similarity=0.545 Sum_probs=21.1
Q ss_pred cceeeecCC---CceEEEEe-CCeEEEEEcCC
Q psy11525 2 VQSICWNTD---VNILAAMQ-DSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~---~~vlv~~~-~~~l~vw~~~~ 29 (244)
|.+++|+|+ .+.|++.+ |+.+.+|-...
T Consensus 209 v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 209 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 568999998 77776655 78899985544
No 237
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.55 E-value=1.3e+02 Score=25.38 Aligned_cols=28 Identities=21% Similarity=0.630 Sum_probs=22.5
Q ss_pred cceeeecCCCceEEEE---eCCeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILAAM---QDSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~---~~~~l~vw~~~~ 29 (244)
+.+++|+++.+.+++. .++.+.+|-.+.
T Consensus 306 v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp EEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred EEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 6789999998877765 489999997655
No 238
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.96 E-value=98 Score=22.13 Aligned_cols=37 Identities=24% Similarity=0.174 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHC----CCHHHHHHHHHHh
Q psy11525 152 AAQQAEMYLLGGNISEAESILLQH----GLIFRAIQVSILT 188 (244)
Q Consensus 152 ~~~~A~ia~~~G~~~eAe~~~l~~----g~~~~Ai~m~~~l 188 (244)
+..+|+.++..|+++.|..+|-++ +.|...+.+|+..
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q~T 63 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQT 63 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 356788888899999888877553 6666666666543
No 239
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=29.94 E-value=1.5e+02 Score=21.18 Aligned_cols=74 Identities=11% Similarity=-0.023 Sum_probs=47.8
Q ss_pred CCHHHHHHHHhc---cCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH---
Q psy11525 92 HSWPQALSLCRT---LNDDILWACLAGMATY----SRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL--- 161 (244)
Q Consensus 92 ~~~~~A~~~~~~---~~~~~lW~~LA~~Al~----~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~--- 161 (244)
+..++|++..+. ..+..-+..||..... ..+++.|.+.|.+.-+. ..++-...+|.++..
T Consensus 39 ~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 39 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCC
Confidence 445555554433 3677788888888888 78888888877654211 111122456777777
Q ss_pred -cCCHHHHHHHHHHC
Q psy11525 162 -GGNISEAESILLQH 175 (244)
Q Consensus 162 -~G~~~eAe~~~l~~ 175 (244)
.+++++|.+.|.++
T Consensus 109 ~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 109 VVKNEKQAVKTFEKA 123 (138)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH
Confidence 77888888887765
No 240
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=29.33 E-value=70 Score=20.60 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHhcCHHHHHHHHHhcC
Q psy11525 176 GLIFRAIQVSILTHNWDRALELALRHK 202 (244)
Q Consensus 176 g~~~~Ai~m~~~l~~W~~Al~LA~~~~ 202 (244)
|..+....+...|..|+++.. .+|+
T Consensus 1 ~~me~~~~lk~~LK~WE~~F~--~~~G 25 (56)
T 2kmu_A 1 GSMERLRDVRERLQAWERAFR--RQRG 25 (56)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HHTC
T ss_pred CcHHHHHHHHHHHHHHHHHHH--HHhC
Confidence 445667889999999999875 4445
No 241
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=28.66 E-value=41 Score=27.47 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=21.4
Q ss_pred cceeeecCCCceEEEEe-----CCeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILAAMQ-----DSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~-----~~~l~vw~~~~ 29 (244)
|.+++|+|+.+-+++.. |+.+.+|-...
T Consensus 21 v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~ 53 (357)
T 3i2n_A 21 VFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH 53 (357)
T ss_dssp EEEEEECTTSSEEEEEEC--CCCEEEEEEEECS
T ss_pred eEEEEEcCCCceEEEecCccCCCcEEEEEeCCC
Confidence 67899999886666555 78999995543
No 242
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.42 E-value=1.4e+02 Score=20.43 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=31.4
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525 138 KVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH 175 (244)
Q Consensus 138 ~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~ 175 (244)
.+..|++|..+.|...+...+-+..|+..+|..++...
T Consensus 27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 45778999999998888777888889999998887654
No 243
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=28.12 E-value=1.3e+02 Score=25.90 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=33.9
Q ss_pred cceeeecCCCceEEEEeCCeEEEEEcCCccccCcccceeeeEeeccCCCCCCCeEEeEeCCEEEEEec
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFVKNHLTIRRY 69 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~f~g~~v~~~~~ 69 (244)
+..++|.++.+++++.+++.+.+|=.....++...+. .....+.-+.|.|+.+.+-..
T Consensus 394 ~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~----------~~~~~v~~v~~~~~~l~~~~~ 451 (464)
T 3v7d_B 394 SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL----------KDADQIWSVNFKGKTLVAAVE 451 (464)
T ss_dssp CCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTT----------TTCSEEEEEEEETTEEEEEEE
T ss_pred ccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhc----------cCCCcEEEEEecCCEEEEEEE
Confidence 3456788888888888899999885444321111011 112333455677776665543
No 244
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=27.93 E-value=1.6e+02 Score=25.76 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=20.4
Q ss_pred cceeeecCC-CceEE-EEeCCeEEEEEc
Q psy11525 2 VQSICWNTD-VNILA-AMQDSALCVWFF 27 (244)
Q Consensus 2 v~~v~W~~~-~~vlv-~~~~~~l~vw~~ 27 (244)
|.+++|+++ .++|+ +..|+++.+|=.
T Consensus 152 V~~v~~~p~~~~~las~s~Dg~v~iwD~ 179 (434)
T 2oit_A 152 VIDMKWNPTVPSMVAVCLADGSIAVLQV 179 (434)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEEE
T ss_pred eEEEEECCCCCCEEEEEECCCeEEEEEc
Confidence 678999997 67776 566889999944
No 245
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=27.34 E-value=55 Score=27.89 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=24.7
Q ss_pred cceeeecCCCceEEEEeCCeEEEEEcCCc
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVWFFPAV 30 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw~~~~~ 30 (244)
|.+++|.||+..++..+++.+.+|.....
T Consensus 179 V~~v~fspdg~~l~s~s~~~~~~~~~~~~ 207 (365)
T 4h5i_A 179 VKDLHFSTDGKVVAYITGSSLEVISTVTG 207 (365)
T ss_dssp CCEEEECTTSSEEEEECSSCEEEEETTTC
T ss_pred eEEEEEccCCceEEeccceeEEEEEeccC
Confidence 67899999999999999999998876543
No 246
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=27.29 E-value=51 Score=28.74 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=22.6
Q ss_pred cceeeecCCCceEEEEeCCeEEEEEc
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVWFF 27 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw~~ 27 (244)
++.++|+++.+.+++..++.+.+|-.
T Consensus 7 ~~~v~~s~dg~~l~~~~~~~i~v~d~ 32 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFAIIKNCILSFKY 32 (450)
T ss_dssp CCEEEECSSSSEEEEEETTEEEEEEE
T ss_pred EEEEEecCCCCEEEEEeCCeEEEEEC
Confidence 56889999999999999999999853
No 247
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=27.17 E-value=50 Score=27.93 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=22.5
Q ss_pred cceeeecCCCceEEEEeCCeEEEEEc
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVWFF 27 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw~~ 27 (244)
|.+++|++|...|++-+++.+.+|-.
T Consensus 22 V~~v~fs~dg~~la~g~~~~~~iw~~ 47 (355)
T 3vu4_A 22 VTDYEFNQDQSCLILSTLKSFEIYNV 47 (355)
T ss_dssp CCEEEECTTSSEEEEECSSEEEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCEEEEEec
Confidence 67899999999999988888888853
No 248
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=26.93 E-value=2e+02 Score=23.60 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=23.7
Q ss_pred cceeeecCCCceEEEEeCCeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw~~~~ 29 (244)
|.+++|+|+..++++..++.+.+|-...
T Consensus 258 v~~v~~sp~~~~la~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVGTDQGVKIFNLMT 285 (343)
T ss_dssp EEEEEECSSSCEEEEEESSCEEEEESSS
T ss_pred EEEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 5789999999999988999999996543
No 249
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=26.29 E-value=4.3e+02 Score=25.15 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH
Q psy11525 106 DDILWACLAGMATYSRDLATSE 127 (244)
Q Consensus 106 ~~~lW~~LA~~Al~~~~l~~A~ 127 (244)
.+.+|-..|......++++.|.
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHH
Confidence 6777777777777776665443
No 250
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=25.87 E-value=52 Score=26.20 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.1
Q ss_pred cceeeecCCCceEEEEeCCeEEEEEc
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVWFF 27 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw~~ 27 (244)
|.+++|+++..++++..++.+.+|-.
T Consensus 228 i~~~~~~~~~~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 228 VYCIKLLPNGDIVSCGEDRTVRIWSK 253 (313)
T ss_dssp EEEEEECTTSCEEEEETTSEEEEECT
T ss_pred EEEEEEecCCCEEEEecCCEEEEEEC
Confidence 67899999888888888999999943
No 251
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=25.82 E-value=1.6e+02 Score=19.99 Aligned_cols=25 Identities=16% Similarity=-0.121 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525 108 ILWACLAGMATYSRDLATSEEAYAA 132 (244)
Q Consensus 108 ~lW~~LA~~Al~~~~l~~A~~~y~~ 132 (244)
.+.-.||..+.+.+++..|..-|..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~ 30 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQ 30 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHH
Confidence 3445678888888888888877764
No 252
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=25.51 E-value=2.8e+02 Score=22.71 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=20.2
Q ss_pred cceeeecCCCceEEEEeC-----CeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILAAMQD-----SALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~-----~~l~vw~~~~ 29 (244)
..+++|++|...+.+.+. +.+.+|-...
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~ 84 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK 84 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence 356899999886666655 6888886543
No 253
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=24.53 E-value=2.1e+02 Score=22.98 Aligned_cols=28 Identities=21% Similarity=0.533 Sum_probs=20.8
Q ss_pred cceeeecCCCceEEE-EeCCeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILAA-MQDSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv~-~~~~~l~vw~~~~ 29 (244)
|.+++|+++.+.|++ ..|+.+.+|-...
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 117 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSS 117 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence 678999998876665 4578899985433
No 254
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=24.47 E-value=62 Score=29.71 Aligned_cols=30 Identities=23% Similarity=0.172 Sum_probs=22.7
Q ss_pred HHHHCCCHHHHHHHHHHhcCHHHHHHHHHh
Q psy11525 171 ILLQHGLIFRAIQVSILTHNWDRALELALR 200 (244)
Q Consensus 171 ~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~ 200 (244)
.++++|+.++|++++...|+.=+|.-|...
T Consensus 186 ~liR~G~~~eA~~lc~~~gq~WRAasL~G~ 215 (460)
T 3iko_C 186 ELILAGAIDEALEEAKLSDNISICMILCGI 215 (460)
T ss_dssp HHHHTTCHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHcCCHHHHHHHccc
Confidence 467788888888888888888888777543
No 255
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=24.32 E-value=1.5e+02 Score=23.73 Aligned_cols=28 Identities=14% Similarity=0.517 Sum_probs=23.7
Q ss_pred cceeeecCCCceEEEEeCCeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw~~~~ 29 (244)
+.++.|.++..++++..|+.+.+|-...
T Consensus 259 v~~~~~~~~~~~~~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 259 INALCFSPNRYWLCAATGPSIKIWDLEG 286 (340)
T ss_dssp EEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred EEeeecCCCCceeeccCCCEEEEEECCC
Confidence 5788999999999999999999995443
No 256
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=24.16 E-value=1.5 Score=33.45 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=31.1
Q ss_pred HHHCCCHHHHHHHHHHhcCHHHHHHHHHhcC-Cc-hhHHHH
Q psy11525 172 LLQHGLIFRAIQVSILTHNWDRALELALRHK-TH-IDTVLY 210 (244)
Q Consensus 172 ~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~-~~-~~~vl~ 210 (244)
|.+++++..+|+++..-+.|.+|++.|..-+ +. ++++|.
T Consensus 16 ykkN~rw~qSI~L~KkDkLykDAietAa~S~d~elaEeLL~ 56 (125)
T 3qil_A 16 PRGSHMWKQSVELAKKDSLYKDAMQYASESKDTELAEELLQ 56 (125)
T ss_dssp SSSCCCCSSCCCCCSCCCCSSHHHHTTTSSCCSHHHHHHHH
T ss_pred hhccccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 5678899999999999999999999987655 44 455554
No 257
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=24.02 E-value=2.1e+02 Score=23.70 Aligned_cols=28 Identities=14% Similarity=0.371 Sum_probs=21.4
Q ss_pred cceeeecCCCceEEEE-eCCeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILAAM-QDSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~-~~~~l~vw~~~~ 29 (244)
|.+++|+++.+.|++. .++.+.+|-...
T Consensus 70 v~~~~~s~~~~~l~~~~~dg~v~vw~~~~ 98 (416)
T 2pm9_A 70 FNDLDWSHNNKIIAGALDNGSLELYSTNE 98 (416)
T ss_dssp EEEEEECSSSSCEEEEESSSCEEEECCSS
T ss_pred eEEEEECCCCCeEEEEccCCeEEEeeccc
Confidence 5789999998777664 578999985544
No 258
>1wmg_A Netrin receptor UNC5H2; six helix bundle, death domain, apoptosis, structural genomi NPPSFA; 2.10A {Mus musculus} SCOP: a.77.1.2
Probab=23.63 E-value=1.3e+02 Score=21.43 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=12.4
Q ss_pred HHHHhccCC----HHHHHHHHH
Q psy11525 98 LSLCRTLND----DILWACLAG 115 (244)
Q Consensus 98 ~~~~~~~~~----~~lW~~LA~ 115 (244)
-++|..++. ..+|+.||.
T Consensus 18 ~~L~~lLD~~~~~g~dWr~LA~ 39 (103)
T 1wmg_A 18 QKICSSLDAPNSRGNDWRLLAQ 39 (103)
T ss_dssp HHHHHHHHCGGGTTSSHHHHHH
T ss_pred HHHHHHhCcCCCCccCHHHHHH
Confidence 346666644 457999998
No 259
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=23.32 E-value=2.9e+02 Score=22.60 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=21.1
Q ss_pred cHHHHHHHHHcCCHHHHHHHHhccC
Q psy11525 81 YISVLHSYAASHSWPQALSLCRTLN 105 (244)
Q Consensus 81 ~~~~l~~~l~~~~~~~A~~~~~~~~ 105 (244)
+++.|.=.|+.++|++|+.+.+.++
T Consensus 21 ~~deLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 21 GVEEIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5667777899999999999998764
No 260
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=23.08 E-value=1.8e+02 Score=19.68 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHhCChhHHHHHHHhhCCCcH----HHHHHHHHHHcCCHHHHHHHHH
Q psy11525 105 NDDILWACLAGMATYSRD---LATSEEAYAAIEQVDKVMYINHIKGIPVK----AAQQAEMYLLGGNISEAESILL 173 (244)
Q Consensus 105 ~~~~lW~~LA~~Al~~~~---l~~A~~~y~~l~d~~~v~~l~~i~~~~~~----~~~~A~ia~~~G~~~eAe~~~l 173 (244)
++...|..+|..-....+ .+.|+ ..+++...+... ....|.++...|+|++|...|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~------------~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~ 67 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVS------------LLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWV 67 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHH------------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHH------------HHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455667777766543333 23333 334444333222 2345666666666666555443
No 261
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=23.00 E-value=4.4e+02 Score=24.88 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=21.7
Q ss_pred cceeeecCCCceEEEEe-CCeEEEEEcC
Q psy11525 2 VQSICWNTDVNILAAMQ-DSALCVWFFP 28 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~-~~~l~vw~~~ 28 (244)
|.+++|+||+..|++.+ |+++-+|-.-
T Consensus 132 v~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 67899999998777765 7889998543
No 262
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=22.33 E-value=75 Score=25.36 Aligned_cols=23 Identities=26% Similarity=0.755 Sum_probs=0.0
Q ss_pred cceeeecCCCceEEEEeCCeEEEE
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVW 25 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw 25 (244)
++-+.|+++ |+|++-.|+++.+|
T Consensus 28 ~~~l~WS~~-~~lAvg~D~tV~iW 50 (318)
T 4ggc_A 28 LNLVDWSSG-NVLAVALDNSVYLW 50 (318)
T ss_dssp CBCEEECTT-SEEEEEETTEEEEE
T ss_pred ceEEEECCC-CEEEEEeCCEEEEE
No 263
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=22.29 E-value=71 Score=27.17 Aligned_cols=27 Identities=7% Similarity=0.204 Sum_probs=23.0
Q ss_pred cceeeecCCCceEEEEeCCeEEEEEcC
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVWFFP 28 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw~~~ 28 (244)
|.+++|+++...|++.+++.+.+|-..
T Consensus 288 v~~~~~s~~g~~l~~~~~~~v~iwd~~ 314 (447)
T 3dw8_B 288 ISDVKFSHSGRYMMTRDYLSVKVWDLN 314 (447)
T ss_dssp EEEEEECTTSSEEEEEESSEEEEEETT
T ss_pred EEEEEECCCCCEEEEeeCCeEEEEeCC
Confidence 678999999998888888999998654
No 264
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=22.26 E-value=2e+02 Score=24.02 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=20.5
Q ss_pred cceeeecCCCceEEEEeC-------CeEEEEEcC
Q psy11525 2 VQSICWNTDVNILAAMQD-------SALCVWFFP 28 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~-------~~l~vw~~~ 28 (244)
|++|+|+||+..|++.++ +++.+|-.+
T Consensus 45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~ 78 (357)
T 4g56_B 45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP 78 (357)
T ss_dssp EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC
T ss_pred EEEEEECCCCCEEEEEcCCCCccccCeEEEEECC
Confidence 678999999999998774 456666433
No 265
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=22.04 E-value=2.5e+02 Score=22.06 Aligned_cols=50 Identities=8% Similarity=-0.010 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHC---------------------CCH------------HHHHHHHHHhcCHHHHHHHHH
Q psy11525 153 AQQAEMYLLGGNISEAESILLQH---------------------GLI------------FRAIQVSILTHNWDRALELAL 199 (244)
Q Consensus 153 ~~~A~ia~~~G~~~eAe~~~l~~---------------------g~~------------~~Ai~m~~~l~~W~~Al~LA~ 199 (244)
...|...-..|+|..|+..|.++ +.| .++=..|..+++|++|+..-+
T Consensus 67 ~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 67 VYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 34677788889999999999872 111 345567778888888877766
Q ss_pred hcC
Q psy11525 200 RHK 202 (244)
Q Consensus 200 ~~~ 202 (244)
...
T Consensus 147 ~Ip 149 (167)
T 3ffl_A 147 GIP 149 (167)
T ss_dssp TSC
T ss_pred cCC
Confidence 543
No 266
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.99 E-value=93 Score=23.05 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHhccCCHHHHH
Q psy11525 82 ISVLHSYAASHSWPQALSLCRTLNDDILWA 111 (244)
Q Consensus 82 ~~~l~~~l~~~~~~~A~~~~~~~~~~~lW~ 111 (244)
...+.+|+..|+.++|.+..+.++.+...-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~ 40 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHH 40 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHH
Confidence 356777888888888888777776554444
No 267
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=21.98 E-value=59 Score=28.18 Aligned_cols=25 Identities=16% Similarity=0.531 Sum_probs=19.6
Q ss_pred cceeeecC-CCceEE-EEeCCeEEEEE
Q psy11525 2 VQSICWNT-DVNILA-AMQDSALCVWF 26 (244)
Q Consensus 2 v~~v~W~~-~~~vlv-~~~~~~l~vw~ 26 (244)
|++++|+| +.++|+ +..|+++.+|=
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd 148 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWN 148 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEEC
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEE
Confidence 68899998 567665 56689999994
No 268
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=21.40 E-value=73 Score=26.40 Aligned_cols=26 Identities=31% Similarity=0.678 Sum_probs=20.7
Q ss_pred cceeeecCCCceEEEE-eCCeEEEEEc
Q psy11525 2 VQSICWNTDVNILAAM-QDSALCVWFF 27 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~-~~~~l~vw~~ 27 (244)
|.+++|+|+.+.|++. .|+++.+|-.
T Consensus 61 v~~v~~sp~~~~las~s~D~~v~iw~~ 87 (330)
T 2hes_X 61 IRSVAWRPHTSLLAAGSFDSTVSIWAK 87 (330)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEc
Confidence 6789999998877664 5789999954
No 269
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=21.37 E-value=1.4e+02 Score=22.62 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=25.7
Q ss_pred HHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHH
Q psy11525 158 MYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDR 193 (244)
Q Consensus 158 ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~ 193 (244)
-++..|+|+||..--+++++.. -+...+..-+-..
T Consensus 9 ~Ll~~g~~eeAf~~aL~ssd~~-lv~~lc~~~dp~~ 43 (139)
T 2vxg_A 9 QLLMAGQINKAFHQALLANDLG-LVEFTLRHTDSNQ 43 (139)
T ss_dssp HHHHHTCHHHHHHHHHHTTCHH-HHHHHHHHSCHHH
T ss_pred HHHHCCCHHHHHHHHHHhCcHH-HHHHHHHcCCHHH
Confidence 4567899999999999999888 4444444445554
No 270
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=21.37 E-value=3.3e+02 Score=22.14 Aligned_cols=26 Identities=27% Similarity=0.632 Sum_probs=20.8
Q ss_pred cceeeecCCCceEEEE-eCCeEEEEEc
Q psy11525 2 VQSICWNTDVNILAAM-QDSALCVWFF 27 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~-~~~~l~vw~~ 27 (244)
|.+++|+|+.+.|++. .|+++.+|-.
T Consensus 110 V~~v~~sp~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 110 VKGVAWSNDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEec
Confidence 6789999998877765 4789999965
No 271
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=20.94 E-value=1.2e+02 Score=29.57 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=37.6
Q ss_pred HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525 89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI 133 (244)
Q Consensus 89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l 133 (244)
+.+|+++-|..+|+.. ..=.-|..||+.-+.-++++-|.-..-.|
T Consensus 348 l~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 7899999999999885 45689999999988888888777665554
No 272
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=20.72 E-value=4.2e+02 Score=23.07 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=7.2
Q ss_pred cCCHHHHHHHHHH
Q psy11525 162 GGNISEAESILLQ 174 (244)
Q Consensus 162 ~G~~~eAe~~~l~ 174 (244)
.|++++|.+.|.+
T Consensus 264 ~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 264 LGDVEQMMKYLDN 276 (452)
T ss_dssp GCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4555555555554
No 273
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=20.68 E-value=64 Score=25.10 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=30.0
Q ss_pred HHHHHHHHhcc-----CCHHHHHHHHHHHHHcC-----------CHHHHHHHHHH
Q psy11525 94 WPQALSLCRTL-----NDDILWACLAGMATYSR-----------DLATSEEAYAA 132 (244)
Q Consensus 94 ~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~-----------~l~~A~~~y~~ 132 (244)
+++|....+.. +....|-+||......+ +++.|..||.+
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~k 116 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQ 116 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHH
Confidence 56888888774 56788999998887654 78888888775
No 274
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=20.40 E-value=76 Score=26.31 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=21.6
Q ss_pred cceeeecCCCceEEEE-eCCeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILAAM-QDSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~-~~~~l~vw~~~~ 29 (244)
|.+++|+++.+.|++. .|+.+.+|-...
T Consensus 337 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 337 VDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 6789999998877665 478899995544
No 275
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.35 E-value=77 Score=26.89 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=20.2
Q ss_pred cceeeecCCCceEEE-EeCCeEEEEEc
Q psy11525 2 VQSICWNTDVNILAA-MQDSALCVWFF 27 (244)
Q Consensus 2 v~~v~W~~~~~vlv~-~~~~~l~vw~~ 27 (244)
|.+++|+|+.+.|+. ..|+++.+|=.
T Consensus 69 V~~~~~sp~~~~l~s~s~D~~v~iWd~ 95 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSASQDGRLIVWNA 95 (380)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 678999998876655 55789999953
No 276
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=20.23 E-value=3.2e+02 Score=21.49 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=20.3
Q ss_pred cceeeecCCCceEEEEe-CCeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILAAMQ-DSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~-~~~l~vw~~~~ 29 (244)
+.+++|+++.+.+++.+ ++.+.+|-...
T Consensus 227 v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 56789999887666654 78888885443
No 277
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=20.04 E-value=45 Score=27.48 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=24.3
Q ss_pred cceeeecCCCceEEEEeCCeEEEEEcCC
Q psy11525 2 VQSICWNTDVNILAAMQDSALCVWFFPA 29 (244)
Q Consensus 2 v~~v~W~~~~~vlv~~~~~~l~vw~~~~ 29 (244)
+.+++|+++..++++..++.+.+|-...
T Consensus 247 v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 247 LLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred eEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 5789999999999999999999997655
Done!