RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11525
(244 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.013
Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 35/128 (27%)
Query: 128 EAYAAIEQVDKV--------MYI-NHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLI 178
+ Y + D Y +HI G +K + E + + L
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHI-GHHLKNIEHPERM------TLFRMVFLD---- 499
Query: 179 FRAIQVSI--LTHNWDRALELA-----LR-HKTHI--DTVLYQR--KKYLDNLEKIETN- 225
FR ++ I + W+ + + L+ +K +I + Y+R LD L KIE N
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 226 --EKFLRL 231
K+ L
Sbjct: 560 ICSKYTDL 567
Score = 33.3 bits (75), Expect = 0.083
Identities = 36/247 (14%), Positives = 71/247 (28%), Gaps = 60/247 (24%)
Query: 35 QGLLR----KTVLLKDIGEFGKSPSIVSFVKNHLTIRRYDGTV--IN------------- 75
Q LL K VL+ + GK+ + ++ + D + +N
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 76 -----YPISPYISVLHSYAAS-----HSWPQALS-------LCRTLN--DDILW--ACLA 114
Y I P + ++++ HS L L ++
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWN 260
Query: 115 GMATYSRDLATSEEAYAA---IEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNIS----- 166
+ L T+ + ++H + + + L +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLP 319
Query: 167 -EAESIL-LQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIET 224
E + + +I +I+ + T WD + T I + L+ LE E
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLAT--WDNWKHVNCDKLTTI------IESSLNVLEPAEY 371
Query: 225 NEKFLRL 231
+ F RL
Sbjct: 372 RKMFDRL 378
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.027
Identities = 53/304 (17%), Positives = 85/304 (27%), Gaps = 117/304 (38%)
Query: 19 DSALCVWFFPAV---------VFADQGL-------LRK-----TVLLKDIGEFGKSPSIV 57
+SAL F AV +F QG LR VL+ D+ +F + ++
Sbjct: 142 NSAL----FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS-AETLS 196
Query: 58 SFVKNHLTIRRYDGTVIN---------------Y----PIS-PYISV--LHSY------- 88
++ L + +N Y PIS P I V L Y
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 89 ---------------------------AASHSWPQALSLCRTLNDDILWACLAGMATYSR 121
A + SW R + + + Y
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 122 DLATSEEAYAAIEQVDKV---MYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLI 178
++E + V M I + + Q +++ S L
Sbjct: 317 TSLPPSILEDSLENNEGVPSPML--SISNLTQEQVQDY--------VNKTNSHLPAGK-- 364
Query: 179 FRAIQVSILTHNWDR------------ALELALRHKTHIDTVLYQ-RKKYLDNLEKIETN 225
QV I N + L L LR K + L Q R + + K++ +
Sbjct: 365 ----QVEISLVNGAKNLVVSGPPQSLYGLNLTLR-KAKAPSGLDQSRIPFSE--RKLKFS 417
Query: 226 EKFL 229
+FL
Sbjct: 418 NRFL 421
>1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase
induction, penicillin-binding protein, membrane protein;
2.50A {Bacillus licheniformis} SCOP: e.3.1.1
Length = 262
Score = 33.7 bits (77), Expect = 0.038
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 6 CWNTDVNILAAMQDSALCVWFF 27
WN D ++ +AM S W+F
Sbjct: 97 EWNQDQDLFSAMSSS--TTWYF 116
>2x02_A Beta-lactamase OXA-10; class D, hydrolase, antibiotic resistance;
HET: KCX PG4; 1.35A {Pseudomonas aeruginosa} PDB:
1k4e_A* 1k6r_A* 1k6s_A* 1k4f_A* 2x01_A* 2wgv_A* 2wgw_A*
2wkh_A* 2wki_A 2rl3_A* 2hpb_A 2hp9_A 2hp6_A 2wgi_A*
2hp5_A 1fof_A 1k55_A* 1e4d_A* 1ewz_A 1k54_A* ...
Length = 248
Score = 32.6 bits (74), Expect = 0.087
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 6 CWNTDVNILAAMQDSALCVWFF 27
W D+ + A+Q S V F
Sbjct: 83 QWERDLTLRGAIQVS--AVPVF 102
>2iwb_A Methicillin resistance MECR1 protein; antibiotic resistance,
bacterial antibiotic resistance, methicillin resistance,
beta-lactamic antibiotics, MRSA; 1.8A {Staphylococcus
aureus} PDB: 2iwc_A* 2iwd_A*
Length = 246
Score = 31.4 bits (71), Expect = 0.21
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 6 CWNTDVNILAAMQDSALCVWFF 27
WN D N+ ++M+ S W++
Sbjct: 86 EWNQDQNLNSSMKYS--VNWYY 105
>1xkz_A Regulatory protein BLAR1; beta-lactam receptor, signal
transduction, signaling protein; HET: CAZ EPE; 1.75A
{Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1xa1_A*
1xa7_A* 3q7z_A* 3q7v_A* 3q81_A* 3q82_A* 3uy6_A
Length = 255
Score = 31.4 bits (71), Expect = 0.23
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 6 CWNTDVNILAAMQDSALCVWFF 27
WN + ++ AMQ+S W+F
Sbjct: 93 AWNKEQDLNTAMQNS--VNWYF 112
>3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine
carboxylation, antibiotic resistance; HET: KCX DRW;
1.40A {Escherichia coli} PDB: 1m6k_A*
Length = 251
Score = 30.7 bits (69), Expect = 0.33
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 6 CWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFVKN 62
WN++ MQ S VW + GL + LKD +G +N
Sbjct: 79 IWNSNHTPKTWMQFS--VVWVS-QEITQKIGLNKIKNYLKDFD-YGNQDFSGDKERN 131
>3g4p_A Beta-lactamase OXA-24; B-lactamases, enzyme mechanism, carbapenem,
resistance, HYDR; HET: KCX; 1.97A {Acinetobacter
baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A* 3mbz_A*
3pae_A* 3pag_A*
Length = 244
Score = 30.7 bits (69), Expect = 0.35
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 6 CWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGK 52
W D+ + AM S V + + GL +K + FG
Sbjct: 83 MWEKDMTLGEAMALS--AVPVY-QELARRTGLELMQKEVKRVN-FGN 125
>3hbr_A OXA-48; class D beta-lactamase, antibiotic, dimer, hydrolase; HET:
KCX; 1.90A {Klebsiella pneumoniae}
Length = 265
Score = 29.9 bits (67), Expect = 0.55
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 6 CWNTDVNILAAMQDSALCVWFF 27
WN D N++ AM+ S V +
Sbjct: 104 TWNRDHNLITAMKYS--VVPVY 123
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 29.9 bits (67), Expect = 0.68
Identities = 14/119 (11%), Positives = 36/119 (30%), Gaps = 14/119 (11%)
Query: 96 QALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYI--NHIKGIPVKAA 153
+ + + CLA + S + A + + +++ ++ H I
Sbjct: 160 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219
Query: 154 QQAEMYLLGGNISEAESILLQHGLIFRA------------IQVSILTHNWDRALELALR 200
+ + + G+ + A + L A + IL ++ A +
Sbjct: 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 278
>1k38_A Penicillinase, beta-lactamase OXA-2; serine beta-lactamase,
hydrolase, antibiotic resistance, carbamylated lysine;
HET: KCX; 1.50A {Salmonella typhimurium} SCOP: e.3.1.1
PDB: 3if6_A*
Length = 254
Score = 29.5 bits (66), Expect = 0.91
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 6 CWNTDVNILAAMQDSALCVWFF 27
N D ++ +AM++S VW +
Sbjct: 85 GHNQDQDLRSAMRNS--TVWVY 104
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH)
domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Length = 120
Score = 27.9 bits (62), Expect = 1.5
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 74 INYPISPYISVLHSYAASHSWPQALSL 100
+ YP + S +++ A H+WP ++
Sbjct: 82 LGYPFALSKSSMYTVGAPHTWPHIVAA 108
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 28.4 bits (62), Expect = 2.2
Identities = 13/102 (12%), Positives = 30/102 (29%), Gaps = 11/102 (10%)
Query: 146 KGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALR----- 200
+G+ + + L A++ L L+ A +V ++ A A R
Sbjct: 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY 381
Query: 201 ----HKTHIDTV--LYQRKKYLDNLEKIETNEKFLRLQSEVI 236
H + + + + IE + ++
Sbjct: 382 MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL 423
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 27.7 bits (61), Expect = 3.7
Identities = 10/50 (20%), Positives = 17/50 (34%)
Query: 109 LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEM 158
+A A + EE YA + + M+ + V Q A +
Sbjct: 141 YHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAIL 190
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Length = 315
Score = 27.1 bits (59), Expect = 6.1
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 74 INYPISPYISVLHSYAASHSWPQALSL 100
+ YP + S +++ A H+WP ++
Sbjct: 80 LGYPFALSKSSMYTVGAPHTWPHIVAA 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 26.6 bits (59), Expect = 9.4
Identities = 5/26 (19%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 1 MVQSICWNTDVNILA-AMQDSALCVW 25
+ S+ W+ D ++ + +D + V
Sbjct: 178 TIYSVDWSRDGALICTSCRDKRVRVI 203
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.403
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,671,569
Number of extensions: 216660
Number of successful extensions: 470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 470
Number of HSP's successfully gapped: 25
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.3 bits)