RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11525
         (244 letters)



>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey
          (Saimiri boliviensis) [TaxId: 27679]}
          Length = 111

 Score = 27.4 bits (60), Expect = 0.70
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 34 DQGLLRKTVLLKDIGEFGKSPSIVSFVKNHLTIRRYDGTVIN 75
          D+G+L+       +G   ++P I   V  H   +  +G   +
Sbjct: 3  DRGVLKIVK---RVGHGEETPMIGDRVYVHYNGKLANGKKFD 41


>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus
           aculeatus) [TaxId: 5053]}
          Length = 334

 Score = 27.4 bits (60), Expect = 1.9
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 85  LHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINH 144
           +  Y    +     SL  +L +          +TY + +   E  +          + + 
Sbjct: 212 VSYYPFYSASATLASLKTSLANL--------QSTYDKPVVVVETNWPVSCPNPAYAFPSD 263

Query: 145 IKGIPVKAAQQAEMY 159
           +  IP   A Q E  
Sbjct: 264 LSSIPFSVAGQQEFL 278


>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE
           {Escherichia coli [TaxId: 562]}
          Length = 267

 Score = 26.1 bits (57), Expect = 4.4
 Identities = 14/108 (12%), Positives = 37/108 (34%), Gaps = 9/108 (8%)

Query: 119 YSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLI 178
           + ++    +      +    +  +N+   I   A  +  +Y  G  + +     +  G  
Sbjct: 154 FEKEKLAQDRIKMKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLG-- 211

Query: 179 FRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNE 226
              I+  +        +E A+     ++  L  R+  ++ L K   N+
Sbjct: 212 ADGIERKL-------EIEKAVTDVAELNGELRNRQYLVEQLTKANIND 252


>d1k92a2 d.210.1.1 (A:189-444) Argininosuccinate synthetase,
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 256

 Score = 25.8 bits (56), Expect = 5.1
 Identities = 7/56 (12%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 119 YSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAA-QQAEMYLLGGNISEAESILL 173
           Y  +  T E+  +     D++  +  ++ + +    ++   Y   G +S + +  +
Sbjct: 193 YKPERLTMEKGDSVFSPDDRIGQLT-MRNLDITDTREKLFGYAKTGLLSSSAASGV 247


>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 287

 Score = 24.9 bits (52), Expect = 9.1
 Identities = 5/24 (20%), Positives = 13/24 (54%)

Query: 2   VQSICWNTDVNILAAMQDSALCVW 25
           V ++ W T   ++++  D+ +  W
Sbjct: 261 VNNLLWETPSTLVSSGADACIKRW 284


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 877,538
Number of extensions: 38915
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 6
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.2 bits)