BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11527
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q01617|CPO_DROME Protein couch potato OS=Drosophila melanogaster GN=cpo PE=2 SV=3
Length = 738
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 80/165 (48%), Gaps = 48/165 (29%)
Query: 11 IGAPFFHAGGPELWHHPLAYATAADLPGTAS--LHQHTLVHPALHPQVPSLNIPHPTAAL 68
+G PFF GGPELWHHPLAY+ AA + L TLVHPALHPQVP+ P
Sbjct: 563 LGGPFF-PGGPELWHHPLAYSAAAAAELPGAAALQHATLVHPALHPQVPTQMTMPPHHQT 621
Query: 69 TAMHHANGMP----------------------------------------HFLPSPALPS 88
TA+H M H+L SPAL S
Sbjct: 622 TAIHPGAAMAHMAAAAAAAAAGGGGGAATAAAAPQSAAATAAAAAAASHHHYLSSPALAS 681
Query: 89 PVGSS-----PPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGS 128
P GS+ P + + +PCSTLFVANLGQFVSE E+K++F S
Sbjct: 682 PAGSTNNASHPGNPQIAANAPCSTLFVANLGQFVSEHELKEVFSS 726
Score = 37.0 bits (84), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 96 SQGMNGMSPCS------TLFVANLGQFVSEQEIKDIFGSFPGF--SRVRMHNKGG---SP 144
SQ M+ ++ S TLFV+ L +E+ +F ++ G+ S +++ +K G SP
Sbjct: 435 SQSMDSVNTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASP 494
Query: 145 VAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183
V F+ + A A +L G IR+E+AK+
Sbjct: 495 VGFVTFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKS 533
>sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1
Length = 561
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 71/122 (58%), Gaps = 7/122 (5%)
Query: 64 PTAALTAMHHANGMPHFLPSPALPSPVGSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIK 123
P+ +A ++G+ +P+ +P ++P Q PC+T++V NL SE+E+K
Sbjct: 391 PSTPFSAYSSSHGIHQRIPAS---TPTNTNPADQN----PPCNTIYVGNLPPSTSEEELK 443
Query: 124 DIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183
+F + G+ R+ KG P+ F+E+ ++ +A++A+ NL G L+SS +G IR+ ++K
Sbjct: 444 VLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQGVCLSSSIKGGIRLSFSKN 503
Query: 184 KM 185
+
Sbjct: 504 PL 505
>sp|Q07655|WHI4_YEAST Protein WHI4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI4 PE=1 SV=1
Length = 649
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 20/128 (15%)
Query: 94 PPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGS---------- 143
PP+ + PC+TL+V NL +EQE++ +F + GF R+ NK S
Sbjct: 521 PPANPADQNPPCNTLYVGNLPPDATEQELRQLFSNQQGFRRLSFRNKMNSHGHGNGHGHG 580
Query: 144 PVAFIEYTDVNFAIQAMSNLNGSYL-----ASSDRGAIRIEYAKTKMAEFTTEHRTRHQG 198
P+ F+E+ DV+FA +A++ L GS L + +++G IR+ ++K + R +
Sbjct: 581 PICFVEFEDVSFATRALAELYGSQLPHPRPSLNNKGGIRLSFSKNPLGV-----RGSNSR 635
Query: 199 TKYGYTIH 206
+K GY+ +
Sbjct: 636 SKSGYSFN 643
>sp|P34761|WHI3_YEAST Protein WHI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI3 PE=1 SV=1
Length = 661
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 94 PPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGS-------PVA 146
PP+ + PC+TL+V NL +EQE++ +F GF R+ NK + P+
Sbjct: 526 PPANPADQNPPCNTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGPMC 585
Query: 147 FIEYTDVNFAIQAMSNLNGSYL---ASSDRGAIRIEYAK 182
F+E+ DV+FA +A++ L G L S +G IR+ ++K
Sbjct: 586 FVEFDDVSFATRALAELYGRQLPRSTVSSKGGIRLSFSK 624
>sp|O59784|MDE7_SCHPO RNA-binding protein mde7 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mde7 PE=4 SV=1
Length = 761
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSN 162
SPC+T++V NL E++++ F G+ R+ KG SP+ F+E+ +V A +AM
Sbjct: 599 SPCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAKAMEK 658
Query: 163 LNGSYLASSDRGAIRIEYAKTKMAEFTTEH 192
+ G+ L +G IR+ Y+K + +TE+
Sbjct: 659 MQGAALDDKIKGGIRLSYSKNPLGVRSTEN 688
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 96 SQGMNGMSP--CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDV 153
+QG +G S +T+FV + Q V+E ++K +FG F V++ G F++Y +
Sbjct: 266 TQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI--PAGKRCGFVQYANR 323
Query: 154 NFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183
A QA+S LNG+ L +IR+ + ++
Sbjct: 324 ACAEQALSVLNGTQLGGQ---SIRLSWGRS 350
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 91 GSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEY 150
G PP+Q ++ P LF+ NL + +E + +F FPGF VR+ G +AF+E+
Sbjct: 198 GQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEF 256
Query: 151 TDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182
+ A A L G + ++ A++I +AK
Sbjct: 257 DNEVQAGAARDALQGFKITQNN--AMKISFAK 286
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 91 GSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEY 150
G PP+Q ++ P LF+ NL + +E + +F FPGF VR+ G +AF+E+
Sbjct: 193 GQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEF 251
Query: 151 TDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182
+ A A L G + ++ A++I +AK
Sbjct: 252 DNEVQAGAARDALQGFKITQNN--AMKISFAK 281
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 91 GSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEY 150
G PP+Q ++ P LF+ NL + +E + +F FPGF VR+ G +AF+E+
Sbjct: 193 GQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEF 251
Query: 151 TDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182
+ A A L G + ++ A++I +AK
Sbjct: 252 DNEVQAGAARDALQGFKITQNN--AMKISFAK 281
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 91 GSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEY 150
G PP+Q ++ P LF+ NL + +E + +F FPGF VR+ G +AF+E+
Sbjct: 193 GQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEF 251
Query: 151 TDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182
+ A A L G + ++ A++I +AK
Sbjct: 252 DNEVQAGAARDALQGFKITQNN--AMKISFAK 281
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSF-PGFSRVRMHNKGGSP-----VAFIEYTDVNFAIQA 159
+ +++ N G+ + ++ +KD+FG F P S M ++ G V+F + D A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 160 MS--NLNGS--YLASSDRGAIRIEYAKTKMAEFTTEHRTRHQGT 199
M+ LNG Y+ + + R K K + + TR+QG
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV 294
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSF-PGFSRVRMHNKGGSP-----VAFIEYTDVNFAIQA 159
+ +++ N G+ + ++ +KD+FG F P S M ++ G V+F + D A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 160 MS--NLNGS--YLASSDRGAIRIEYAKTKMAEFTTEHRTRHQGT 199
M+ LNG Y+ + + R K K + + TR+QG
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV 294
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSF-PGFSRVRMHNKGGSP-----VAFIEYTDVNFAIQA 159
+ +++ N G+ + ++ +KD+FG F P S M ++ G V+F + D A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 160 MS--NLNGS--YLASSDRGAIRIEYAKTKMAEFTTEHRTRHQGT 199
M+ LNG Y+ + + R K K + + TR+QG
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV 294
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 107 TLFVANLGQFVSEQEIKDIF---GSFPGFSRVRMHNKGGSPVA--FIEYTDVNFAIQAMS 161
++FV N+ +E+++KDIF GS F R+ + G P F EY D A+ AM
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSF-RLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 NLNGSYLASSDRGAIRIEYAKTK 184
NLNG + A+R++ A ++
Sbjct: 76 NLNGREFSGR---ALRVDNAASE 95
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 107 TLFVANLGQFVSEQEIKDIF---GSFPGFSRVRMHNKGGSPVA--FIEYTDVNFAIQAMS 161
++FV N+ +E+++KDIF GS F R+ + G P F EY D A+ AM
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSF-RLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 NLNGSYLASSDRGAIRIEYAKTK 184
NLNG + A+R++ A ++
Sbjct: 76 NLNGREFSGR---ALRVDNAASE 95
>sp|Q1LZH0|U1SBP_BOVIN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos
taurus GN=SNRNP35 PE=2 SV=1
Length = 245
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 95 PSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRM-------HNKGGSPVAF 147
P++G+ G P TLFVA L E+++K++F + R+R+ +KG AF
Sbjct: 41 PNKGVTG-DPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKG---YAF 96
Query: 148 IEYTDVNFAIQAMSNLNG 165
IEY D ++A + +G
Sbjct: 97 IEYKDERSLLKAYRDADG 114
>sp|P78795|EIF3G_SCHPO Eukaryotic translation initiation factor 3 subunit G
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tif35 PE=1 SV=2
Length = 282
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMS 161
+TL V NL E+E++D+F F G RV + AF+ Y D + AI+A
Sbjct: 202 ATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARD 261
Query: 162 NLNG 165
L+G
Sbjct: 262 RLDG 265
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 69/155 (44%), Gaps = 26/155 (16%)
Query: 51 ALHPQVPSL-----NIPHPTAALTAMHHANGMPHF-----LPSPAL---PSPVGSSPPSQ 97
AL P VP ++P T A MH A P+ +P P + P G P Q
Sbjct: 130 ALLPGVPGQMAAMQDMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQMPPGGMPHGQ 189
Query: 98 GMNG----MSPCS------TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAF 147
M G M P S LF+ NL + +E + +F FPGF VR+ G +AF
Sbjct: 190 LMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAF 248
Query: 148 IEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182
+E+ + A A +L G + S+ +++I +AK
Sbjct: 249 VEFDNEVQAGAARESLQGFKITQSN--SMKISFAK 281
>sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp.
japonica GN=Os05g0154800 PE=3 SV=1
Length = 253
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRM-HNKGGSPVAFIEYTDVNFAIQAM 160
+ P + LFV NL + ++ +F +PGF VRM K G +AF+EY D A AM
Sbjct: 175 IVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPG--IAFVEYGDEGQATAAM 232
Query: 161 SNLNGSYLASSDRGAIRIEYAK 182
++L G + ++ + I YAK
Sbjct: 233 NHLQGFKITKDNQ--MLISYAK 252
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 83 SPALPSPVGSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKD-IFGSFPGFSRV------ 135
S + + VG P + NG P T+++ NL + + +E+K + F F ++
Sbjct: 2 SGEVAAAVGGGAPEE--NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAF 59
Query: 136 -RMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
+ +KG + V F + A+++M + +RI+YAKTK
Sbjct: 60 KTLKHKGQAWVVFEDVASATEALKSMQDF------PFHNKPMRIQYAKTK 103
>sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica
GN=OsI_18512 PE=3 SV=1
Length = 253
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRM-HNKGGSPVAFIEYTDVNFAIQAM 160
+ P + LFV NL + ++ +F +PGF VRM K G +AF+EY D A AM
Sbjct: 175 IVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPG--IAFVEYGDEGQATAAM 232
Query: 161 SNLNGSYLASSDRGAIRIEYAK 182
++L G + ++ + I YAK
Sbjct: 233 NHLQGFKITKDNQ--MLISYAK 252
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 83 SPALPSPVGSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKD-IFGSFPGFSRV------ 135
S + + VG P + NG P T+++ NL + + +E+K + F F ++
Sbjct: 2 SGEVAAAVGGGAPEE--NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAF 59
Query: 136 -RMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
+ +KG + V F + A+++M + +RI+YAKTK
Sbjct: 60 KTLKHKGQAWVVFEDVASATEALKSMQDF------PFHNKPMRIQYAKTK 103
>sp|Q5U1W5|U1SBP_RAT U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus
norvegicus GN=Snrnp35 PE=2 SV=1
Length = 244
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 95 PSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRM-------HNKGGSPVAF 147
P++G+ G P TLFVA L E+++K++F + R+R+ +KG AF
Sbjct: 41 PNKGVTG-DPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKG---YAF 96
Query: 148 IEYTDVNFAIQAMSNLNG 165
IEY + ++A + +G
Sbjct: 97 IEYKEERALLKAYRDADG 114
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSF-PGFS-RVRMHNKGGSPVA--FIEYTDVNFAIQAMSN 162
++FV N+ +E+++KDIF P S R+ + G P F EY D A+ AM N
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 163 LNGSYLASSDRGAIRIEYAKTK 184
LNG + A+R++ A ++
Sbjct: 77 LNGREFSGR---ALRVDNAASE 95
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSF-PGFS-RVRMHNKGGSPVA--FIEYTDVNFAIQAMSN 162
++FV N+ +E+++KDIF P S R+ + G P F EY D A+ AM N
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 163 LNGSYLASSDRGAIRIEYAKTK 184
LNG + A+R++ A ++
Sbjct: 77 LNGREFSGR---ALRVDNAASE 95
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSF-PGFS-RVRMHNKGGSPVA--FIEYTDVNFAIQAMSN 162
++FV N+ +E+++KDIF P S R+ + G P F EY D A+ AM N
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 163 LNGSYLASSDRGAIRIEYAKTK 184
LNG + A+R++ A ++
Sbjct: 77 LNGREFSGR---ALRVDNAASE 95
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSF-PGFS-RVRMHNKGGSPVA--FIEYTDVNFAIQAMSN 162
++FV N+ +E+++KDIF P S R+ + G P F EY D A+ AM N
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 163 LNGSYLASSDRGAIRIEYAKTK 184
LNG + A+R++ A ++
Sbjct: 77 LNGREFSGR---ALRVDNAASE 95
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNG 165
+T+FV L V++ E+K IFG F V++ G F++Y + A A+S LNG
Sbjct: 260 TTIFVGGLDANVTDDELKSIFGQFGELLHVKI--PPGKRCGFVQYANKASAEHALSVLNG 317
Query: 166 SYLASSDRGAIRIEYAKTKMAEFTTEHRTRHQGTKYGY 203
+ L +IR+ + ++ + ++ + G YGY
Sbjct: 318 TQLGGQ---SIRLSWGRSPNKQ--SDQAQWNGGGYYGY 350
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSP-VAFIEYTDVNFAIQAMSNLNG 165
TLF+ NL + + ++++IF F + + G P AF++Y D+ +A+ ++G
Sbjct: 440 TLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDG 499
Query: 166 SYL 168
YL
Sbjct: 500 EYL 502
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSF-PGFSRVRMHNKGGSP-----VAFIEYTDVNFAIQA 159
+ +++ N G+ + ++ +K++FG F P S M ++ G V+F + D A+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 160 MS--NLNGS--YLASSDRGAIRIEYAKTKMAEFTTEHRTRHQGT 199
M+ LNG Y+ + + R K K + + TR+QG
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV 294
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSF-PGFSRVRMHNKGGSP-----VAFIEYTDVNFAIQA 159
+ +++ N G+ + ++ +K++FG F P S M ++ G V+F + D A+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 160 MS--NLNGS--YLASSDRGAIRIEYAKTKMAEFTTEHRTRHQGT 199
M+ LNG Y+ + + R K K + + TR+QG
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV 294
>sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=TIF35 PE=3 SV=1
Length = 303
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPV----AFIEYTDVNFAIQAMS 161
+TL V N+ + EQE++D+F F +RV + + + AFI Y D + A++A +
Sbjct: 223 ATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGMAKGFAFISYADRDDAVKACN 282
Query: 162 NLNG---SYLASSDRGAIRIEYAK 182
++G +L +R+E+AK
Sbjct: 283 KMDGFGFRHL------ILRVEFAK 300
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1
Length = 3664
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSP-VAFIEYTDVNFAIQAMSNLNG 165
TLF+ NL + + ++++IF F + + G P AF++Y D+ +A+ ++G
Sbjct: 439 TLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDG 498
Query: 166 SYL 168
YL
Sbjct: 499 EYL 501
>sp|Q9D384|U1SBP_MOUSE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus
musculus GN=Snrnp35 PE=2 SV=1
Length = 244
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 95 PSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRM-------HNKGGSPVAF 147
P++G+ G P TLFVA L E+++K++F + R+R+ +KG AF
Sbjct: 41 PNKGVTG-DPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKG---YAF 96
Query: 148 IEYTDVNFAIQAMSNLNG 165
IEY + ++A + +G
Sbjct: 97 IEYKEERALMKAYRDADG 114
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMS 161
M+ LFV NL V+E+ ++ F F RV+ AFI + + + A++AM
Sbjct: 244 MAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKL----KDYAFIHFDERDGAVKAME 299
Query: 162 NLNGSYLASSDRGAIRIEYAK 182
+NG L + I I +AK
Sbjct: 300 EMNGKDLEGEN---IEIVFAK 317
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 89 PVGSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHN-KGGSPVAF 147
P S PS G M P + LF+ NL + ++ +F +PGF +RM + K G +AF
Sbjct: 142 PAPSFQPS-GQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPG--IAF 198
Query: 148 IEYTDVNFAIQAMSNLNG 165
+EY D A AM L G
Sbjct: 199 VEYEDDVQASIAMQPLQG 216
>sp|Q16560|U1SBP_HUMAN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo
sapiens GN=SNRNP35 PE=1 SV=1
Length = 246
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 95 PSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRM-------HNKGGSPVAF 147
P++G+ G P TLFVA L E ++K++F + R+R+ +KG AF
Sbjct: 41 PNKGVIG-DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKG---YAF 96
Query: 148 IEYTDVNFAIQAMSNLNG 165
IEY + I+A + +G
Sbjct: 97 IEYKEERAVIKAYRDADG 114
>sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1
Length = 392
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSR---VRMHNKGGSP-VAFIEYTDVNFAIQAMSNL 163
+F +LG V++ + F +P F R +R G + F+ + D N ++AM +
Sbjct: 295 IFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREM 354
Query: 164 NGSYLASSDRGAIRIEYAKTKMAEFTTEHRTRHQGTKYG 202
NG Y+ S I++ ++ K + + + K G
Sbjct: 355 NGKYVGSR---PIKLRKSQWKDRNMDVVRKKQREKKKLG 390
>sp|Q4KMD3|U1SBP_DANRE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio
rerio GN=snrnp35 PE=2 SV=1
Length = 208
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 95 PSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEY 150
P++G+ G P TLFVA L +E++++D+F F R+R+ AFIEY
Sbjct: 40 PNRGVCG-DPDLTLFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEY 98
Query: 151 TDVNFAIQAMSNLNGSYL 168
+ +A + N L
Sbjct: 99 KEERSLKRAWRDANKLIL 116
>sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1
SV=4
Length = 475
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 108 LFVANLGQFVSEQEIKDI---FGSFPGFSRVRMHNKGGSP-VAFIEYTDVNFAIQAMSNL 163
LF+ L ++++ ++K++ FG F+ V+ G S AF EY D+N QA++ L
Sbjct: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320
Query: 164 NGSYLASS 171
NG L
Sbjct: 321 NGMQLGDK 328
>sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1
SV=3
Length = 475
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 108 LFVANLGQFVSEQEIKDI---FGSFPGFSRVRMHNKGGSP-VAFIEYTDVNFAIQAMSNL 163
LF+ L ++++ ++K++ FG F+ V+ G S AF EY D+N QA++ L
Sbjct: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320
Query: 164 NGSYLASS 171
NG L
Sbjct: 321 NGMQLGDK 328
>sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana
GN=At1g06960 PE=1 SV=1
Length = 229
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 94 PPSQ--GMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRM-HNKGGSPVAFIEY 150
PP Q G + M P + LF+ NL + ++ +F +PGF +RM K G +AF+EY
Sbjct: 141 PPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPG--IAFVEY 198
Query: 151 TDVNFAIQAMSNLNG 165
D + AM L G
Sbjct: 199 EDDVQSSMAMQALQG 213
>sp|A4RHN3|EIF3G_MAGO7 Eukaryotic translation initiation factor 3 subunit G OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=TIF35 PE=3 SV=1
Length = 303
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPV----AFIEYTDVNFAIQAMS 161
+TL V N+ + EQE++D+F F +RV + + + AFI + D A++A +
Sbjct: 223 ATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVKACN 282
Query: 162 NLNGSYLASSDRGAIRIEYAK 182
++G +R+E+AK
Sbjct: 283 KMDGWGFKHL---ILRVEFAK 300
>sp|Q9FMP4|PM14_ARATH Pre-mRNA branch site p14-like protein OS=Arabidopsis thaliana
GN=At5g12190 PE=2 SV=1
Length = 124
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRM-HNKGGSPVAFIEYTDVNFAIQAMSNLNG 165
L+V NL ++ +E+ DIFG + ++R+ +K AF+ Y D+ A A+ +L+G
Sbjct: 20 VLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG 79
Query: 166 SYLASSDRGAIRIEYAKTKMAEFTTEHRTRHQGTK 200
+A +R I + Y KM++ + ++ + TK
Sbjct: 80 FNVA--NRYLIVLYYQHAKMSKKFDQKKSEDEITK 112
>sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
japonica GN=Os03g0298800 PE=2 SV=1
Length = 232
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRM-HNKGGSPVAFIEYTDVNFAIQAMSN 162
P + LF+ NL + ++ +F +PGF VRM K G +AF+EY D + ++ AM
Sbjct: 156 PNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPG--IAFVEYEDDSQSMVAMQA 213
Query: 163 LNG 165
L G
Sbjct: 214 LQG 216
>sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
indica GN=OsI_11177 PE=3 SV=1
Length = 232
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRM-HNKGGSPVAFIEYTDVNFAIQAMSN 162
P + LF+ NL + ++ +F +PGF VRM K G +AF+EY D + ++ AM
Sbjct: 156 PNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPG--IAFVEYEDDSQSMVAMQA 213
Query: 163 LNG 165
L G
Sbjct: 214 LQG 216
>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis
thaliana GN=At5g53180 PE=2 SV=1
Length = 429
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 84 PALPSPVGSS-PPSQGMNG--MSPCSTLFVA---NLGQFVSEQEIKDIFGSFPGFSRVRM 137
P PS + S+ + G++G M P S + +A N+ V+ + +F +F ++ M
Sbjct: 218 PVAPSAIDSTGQVAVGVDGKKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAM 277
Query: 138 HNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK-TKMAEFTTEHRTR 195
+K G A I+Y+DV A+ A L G + + I Y++ T ++ R+R
Sbjct: 278 FDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSR 336
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 91 GSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEY 150
G+S P+ + P LF+ NL + +E + +F FPGF VR+ G +AF+E+
Sbjct: 136 GNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV-PGRHDIAFVEF 194
Query: 151 TDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182
+ A A L G + S A++I YAK
Sbjct: 195 ENDGQAGAARDALQGFKITPSH--AMKITYAK 224
>sp|Q6MFP4|EIF3G_NEUCR Eukaryotic translation initiation factor 3 subunit G OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=tif-35 PE=3 SV=2
Length = 297
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPV----AFIEYTDVNFAIQAMS 161
+TL V N+ + EQE++D+F F +RV + + + AFI + D + A++A +
Sbjct: 217 ATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADRSDAVKACA 276
Query: 162 NLNG---SYLASSDRGAIRIEYAK 182
++G +L +R+E+AK
Sbjct: 277 KMDGFGFRHL------ILRVEFAK 294
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSF---PGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSN 162
+ +++ NL ++EQE D+FG F S V+ N F+ Y + A +A+
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 163 LNGS-------YLASSDRGAIRIEYAKTKMAEFTTEHRTRHQGT 199
LN Y+ + + R E + + + E ++QG
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGV 364
>sp|Q0U6E7|EIF3G_PHANO Eukaryotic translation initiation factor 3 subunit G
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=TIF35 PE=3 SV=2
Length = 281
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 84 PALPSPVGSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRM------ 137
P L G+ G +TL V N+ +F EQ+++D+F + +RV +
Sbjct: 180 PHLRGRAGAGEKMGGKFDRDDSATLRVTNVSEFAEEQDLRDMFSRYGHVTRVFLAKDRET 239
Query: 138 -HNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182
KG + V++ + TD A + M +L +R+E+AK
Sbjct: 240 GRAKGFAFVSYADRTDAAKACEKMDGFGFGHL------ILRVEFAK 279
>sp|Q9W6I1|RBPMS_CHICK RNA-binding protein with multiple splicing OS=Gallus gallus
GN=RBPMS PE=2 SV=1
Length = 200
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 98 GMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAI 157
G N TLFV+ L + +E+ +F F G+ + PV F+ + A
Sbjct: 14 GGNVEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDSRAGAE 73
Query: 158 QAMSNLNGSYLASSDRGAIRIEYAK--TKMAE 187
A + LNG + +R+E+AK TKMA+
Sbjct: 74 AAKNALNGIRFDPENPQTLRLEFAKANTKMAK 105
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,280,120
Number of Sequences: 539616
Number of extensions: 3605219
Number of successful extensions: 11180
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 277
Number of HSP's that attempted gapping in prelim test: 10935
Number of HSP's gapped (non-prelim): 455
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)