Query psy11527
Match_columns 206
No_of_seqs 241 out of 2239
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 20:41:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 1.4E-17 3.1E-22 128.5 14.3 81 103-186 32-116 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.1E-16 2.4E-21 139.2 13.6 79 103-184 267-349 (352)
3 KOG0125|consensus 99.7 5E-17 1.1E-21 137.0 10.5 84 104-190 95-180 (376)
4 KOG0146|consensus 99.7 2.6E-17 5.6E-22 135.7 7.7 85 99-186 279-367 (371)
5 KOG0107|consensus 99.7 2.7E-16 5.8E-21 122.4 9.0 80 103-186 8-87 (195)
6 TIGR01659 sex-lethal sex-letha 99.7 5.1E-16 1.1E-20 135.6 10.6 81 101-184 103-187 (346)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5.7E-16 1.2E-20 134.8 10.4 78 105-185 3-84 (352)
8 PF00076 RRM_1: RNA recognitio 99.6 9.1E-16 2E-20 102.6 7.7 67 108-177 1-70 (70)
9 KOG0121|consensus 99.6 6.6E-16 1.4E-20 114.7 6.9 79 102-183 33-115 (153)
10 TIGR01659 sex-lethal sex-letha 99.6 2.7E-15 5.8E-20 131.0 11.7 82 104-186 192-277 (346)
11 KOG0122|consensus 99.6 4.1E-15 9E-20 121.2 11.7 81 101-184 185-269 (270)
12 PLN03120 nucleic acid binding 99.6 4.5E-15 9.6E-20 123.5 10.3 75 105-183 4-79 (260)
13 KOG0144|consensus 99.6 3E-15 6.4E-20 130.2 5.8 89 102-190 121-212 (510)
14 KOG0148|consensus 99.6 2E-14 4.4E-19 118.7 10.4 84 102-190 161-244 (321)
15 PLN03213 repressor of silencin 99.5 1.1E-14 2.5E-19 128.6 8.1 82 102-186 7-90 (759)
16 KOG0148|consensus 99.5 1.8E-14 3.8E-19 119.1 8.6 83 102-187 59-145 (321)
17 PLN03121 nucleic acid binding 99.5 4.2E-14 9.1E-19 116.1 10.0 75 104-182 4-79 (243)
18 TIGR01645 half-pint poly-U bin 99.5 4E-14 8.8E-19 130.7 10.9 78 103-183 105-186 (612)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.9E-13 4E-18 124.4 15.1 79 102-184 272-351 (481)
20 KOG0105|consensus 99.5 3.6E-14 7.9E-19 111.6 8.2 78 104-184 5-83 (241)
21 TIGR01645 half-pint poly-U bin 99.5 5.7E-14 1.2E-18 129.7 10.8 79 104-185 203-285 (612)
22 TIGR01628 PABP-1234 polyadenyl 99.5 5.4E-14 1.2E-18 129.9 10.4 76 107-185 2-81 (562)
23 TIGR01628 PABP-1234 polyadenyl 99.5 6.5E-14 1.4E-18 129.4 10.2 80 103-185 283-365 (562)
24 KOG4207|consensus 99.5 4E-14 8.7E-19 113.0 7.5 81 102-185 10-94 (256)
25 PF14259 RRM_6: RNA recognitio 99.5 1.2E-13 2.6E-18 93.0 8.9 67 108-177 1-70 (70)
26 KOG0114|consensus 99.5 2.1E-13 4.5E-18 98.0 10.1 79 103-184 16-95 (124)
27 TIGR01648 hnRNP-R-Q heterogene 99.5 2E-13 4.3E-18 125.7 12.0 77 103-186 231-309 (578)
28 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.4E-13 3.1E-18 125.2 10.7 79 105-184 96-174 (481)
29 TIGR01648 hnRNP-R-Q heterogene 99.5 1.4E-13 3.1E-18 126.7 10.8 77 104-182 57-136 (578)
30 KOG0145|consensus 99.5 3.7E-13 8E-18 110.9 11.3 84 103-189 39-126 (360)
31 KOG0149|consensus 99.5 6.7E-14 1.5E-18 113.6 6.6 75 105-183 12-90 (247)
32 smart00362 RRM_2 RNA recogniti 99.5 3.3E-13 7.2E-18 89.2 8.7 69 107-178 1-71 (72)
33 KOG0117|consensus 99.5 1.6E-13 3.6E-18 119.9 8.8 82 102-190 256-337 (506)
34 KOG0109|consensus 99.5 6.4E-14 1.4E-18 116.8 5.8 74 106-186 3-76 (346)
35 TIGR01642 U2AF_lg U2 snRNP aux 99.5 4.8E-13 1E-17 121.9 11.9 78 104-184 294-375 (509)
36 KOG0111|consensus 99.5 5.7E-14 1.2E-18 113.2 5.0 81 104-187 9-93 (298)
37 KOG0144|consensus 99.5 3.3E-13 7.3E-18 117.6 10.0 85 103-187 32-120 (510)
38 TIGR01622 SF-CC1 splicing fact 99.4 3.9E-13 8.4E-18 121.1 10.0 76 105-183 186-265 (457)
39 KOG0113|consensus 99.4 1E-12 2.2E-17 110.0 10.1 80 102-184 98-181 (335)
40 KOG4206|consensus 99.4 6.2E-13 1.3E-17 107.5 8.2 81 103-186 7-92 (221)
41 PF13893 RRM_5: RNA recognitio 99.4 1.4E-12 3E-17 84.4 8.4 56 122-181 1-56 (56)
42 TIGR01622 SF-CC1 splicing fact 99.4 1.4E-12 3E-17 117.5 10.2 78 103-184 87-168 (457)
43 KOG0131|consensus 99.4 5E-13 1.1E-17 104.8 6.2 78 102-182 6-87 (203)
44 smart00360 RRM RNA recognition 99.4 1.9E-12 4.2E-17 85.1 7.9 67 110-179 1-71 (71)
45 KOG0108|consensus 99.4 9.9E-13 2.1E-17 117.2 8.3 78 106-186 19-100 (435)
46 cd00590 RRM RRM (RNA recogniti 99.4 4E-12 8.6E-17 84.3 9.3 71 107-180 1-74 (74)
47 COG0724 RNA-binding proteins ( 99.4 3.8E-12 8.3E-17 104.1 9.7 75 105-182 115-193 (306)
48 KOG0117|consensus 99.4 4.5E-12 9.7E-17 111.0 10.4 80 103-184 81-164 (506)
49 KOG0130|consensus 99.4 1.7E-12 3.8E-17 97.4 6.7 85 104-191 71-159 (170)
50 KOG1457|consensus 99.3 2.6E-11 5.6E-16 98.1 13.1 89 102-190 31-124 (284)
51 KOG0126|consensus 99.3 1.8E-13 4E-18 107.3 0.6 75 104-181 34-112 (219)
52 KOG0146|consensus 99.3 2.5E-12 5.5E-17 106.4 7.1 82 104-185 18-102 (371)
53 KOG0109|consensus 99.3 7.7E-12 1.7E-16 104.5 5.6 76 104-186 77-152 (346)
54 KOG0132|consensus 99.2 2.2E-11 4.7E-16 112.6 7.6 75 105-184 421-495 (894)
55 KOG0124|consensus 99.2 9.2E-12 2E-16 106.9 4.8 74 105-181 113-190 (544)
56 KOG0145|consensus 99.2 6.3E-11 1.4E-15 97.9 9.3 77 105-184 278-358 (360)
57 KOG1457|consensus 99.2 1E-11 2.3E-16 100.4 3.9 77 102-178 207-283 (284)
58 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.2E-10 2.5E-15 106.3 10.0 75 102-182 172-258 (509)
59 KOG0127|consensus 99.2 7.7E-11 1.7E-15 105.6 8.2 78 105-185 117-197 (678)
60 KOG4661|consensus 99.2 5.8E-11 1.3E-15 106.9 7.1 84 104-190 404-491 (940)
61 KOG0415|consensus 99.2 8.3E-11 1.8E-15 100.7 7.2 80 102-184 236-319 (479)
62 KOG0153|consensus 99.2 1.9E-10 4E-15 98.2 9.2 78 103-185 226-304 (377)
63 smart00361 RRM_1 RNA recogniti 99.1 2.4E-10 5.2E-15 77.4 7.1 57 119-178 2-69 (70)
64 KOG0127|consensus 99.1 1.3E-10 2.8E-15 104.1 7.3 81 105-188 5-89 (678)
65 KOG0147|consensus 99.1 2.9E-10 6.2E-15 102.0 6.6 76 106-184 279-358 (549)
66 KOG0123|consensus 99.1 4.9E-10 1.1E-14 98.8 8.0 75 106-184 77-153 (369)
67 KOG0131|consensus 99.1 3.3E-10 7.1E-15 89.1 6.1 82 101-185 92-178 (203)
68 KOG1190|consensus 99.0 7.2E-09 1.6E-13 90.3 11.4 77 105-185 297-374 (492)
69 KOG4212|consensus 99.0 2.8E-09 6.1E-14 93.6 8.7 75 105-182 44-122 (608)
70 KOG0110|consensus 98.9 2.9E-09 6.3E-14 98.0 8.8 74 106-182 516-596 (725)
71 KOG4660|consensus 98.9 6.9E-10 1.5E-14 99.7 4.0 70 104-177 74-143 (549)
72 KOG0116|consensus 98.9 7E-09 1.5E-13 92.3 9.8 79 104-186 287-369 (419)
73 KOG0110|consensus 98.9 1.2E-09 2.5E-14 100.5 5.0 78 104-184 612-693 (725)
74 KOG0151|consensus 98.9 3.6E-09 7.9E-14 97.4 8.1 80 102-184 171-257 (877)
75 KOG4212|consensus 98.9 4.7E-09 1E-13 92.2 6.8 76 102-181 533-608 (608)
76 KOG0123|consensus 98.9 8.3E-09 1.8E-13 91.0 8.3 75 106-186 2-77 (369)
77 KOG0124|consensus 98.8 4.9E-09 1.1E-13 90.3 6.3 77 104-183 209-289 (544)
78 KOG0106|consensus 98.8 7.2E-09 1.6E-13 84.4 5.0 73 106-185 2-74 (216)
79 KOG0533|consensus 98.8 2.8E-08 6.2E-13 82.5 8.0 76 106-184 84-162 (243)
80 KOG4208|consensus 98.8 2.8E-08 6E-13 79.7 7.3 77 105-184 49-130 (214)
81 KOG4205|consensus 98.7 1.2E-08 2.7E-13 87.6 5.0 77 104-184 5-85 (311)
82 KOG4454|consensus 98.7 8.1E-09 1.8E-13 83.5 2.4 76 104-182 8-85 (267)
83 KOG4205|consensus 98.7 5.1E-08 1.1E-12 83.8 6.6 77 104-184 96-176 (311)
84 KOG1548|consensus 98.6 1.4E-07 3.1E-12 80.8 8.2 80 103-185 132-222 (382)
85 KOG4206|consensus 98.6 1.7E-07 3.7E-12 76.1 8.2 78 102-182 143-220 (221)
86 KOG4209|consensus 98.6 1.7E-07 3.7E-12 77.7 7.4 78 103-184 99-180 (231)
87 PF11608 Limkain-b1: Limkain b 98.5 5E-07 1.1E-11 62.8 7.7 71 106-185 3-78 (90)
88 KOG1456|consensus 98.5 5.3E-07 1.1E-11 78.1 9.2 82 102-185 117-200 (494)
89 KOG0226|consensus 98.5 9.7E-08 2.1E-12 78.8 3.9 78 104-184 189-270 (290)
90 KOG1190|consensus 98.3 1E-06 2.3E-11 77.0 6.6 78 106-184 151-228 (492)
91 KOG0120|consensus 98.2 1.8E-06 4E-11 78.2 5.9 80 103-185 287-370 (500)
92 KOG1456|consensus 98.2 3E-05 6.5E-10 67.5 11.5 80 101-184 283-363 (494)
93 KOG0147|consensus 98.0 1.9E-06 4.1E-11 77.7 1.7 79 102-184 176-258 (549)
94 PF04059 RRM_2: RNA recognitio 98.0 4.5E-05 9.8E-10 54.9 8.1 79 106-184 2-87 (97)
95 KOG1855|consensus 98.0 7.2E-06 1.6E-10 72.2 3.9 65 104-168 230-311 (484)
96 PF08777 RRM_3: RNA binding mo 97.9 3.3E-05 7.1E-10 56.5 6.7 59 106-166 2-60 (105)
97 KOG2416|consensus 97.9 1.9E-05 4.1E-10 72.1 5.6 81 102-184 441-522 (718)
98 COG5175 MOT2 Transcriptional r 97.9 3.7E-05 7.9E-10 66.2 6.7 75 106-183 115-202 (480)
99 KOG1995|consensus 97.8 2.9E-05 6.4E-10 67.0 4.6 81 102-185 63-155 (351)
100 KOG0106|consensus 97.8 2.7E-05 5.8E-10 63.7 3.9 71 104-181 98-168 (216)
101 KOG4211|consensus 97.7 0.00033 7.1E-09 62.9 9.9 76 102-182 7-84 (510)
102 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00016 3.5E-09 46.2 5.4 52 106-160 2-53 (53)
103 KOG0112|consensus 97.5 0.00017 3.7E-09 68.7 5.2 79 103-184 453-531 (975)
104 KOG4210|consensus 97.4 0.00013 2.8E-09 62.4 3.9 77 105-185 184-265 (285)
105 KOG2314|consensus 97.4 0.00031 6.7E-09 64.1 5.6 75 105-181 58-141 (698)
106 KOG1548|consensus 97.4 0.00076 1.6E-08 58.3 7.7 77 104-183 264-351 (382)
107 PF08952 DUF1866: Domain of un 97.3 0.0018 3.9E-08 49.8 7.9 77 102-186 24-109 (146)
108 KOG4676|consensus 97.2 0.00051 1.1E-08 60.2 5.1 63 106-168 8-77 (479)
109 KOG3152|consensus 97.2 0.00023 4.9E-09 59.2 2.8 67 105-171 74-156 (278)
110 KOG0120|consensus 97.2 0.0013 2.7E-08 60.1 7.5 61 120-183 424-491 (500)
111 KOG4211|consensus 97.2 0.0012 2.6E-08 59.4 7.1 73 105-181 103-179 (510)
112 KOG0129|consensus 97.1 0.0015 3.3E-08 59.0 6.6 61 102-162 367-432 (520)
113 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0044 9.5E-08 44.8 7.8 74 105-182 6-90 (100)
114 KOG4849|consensus 97.0 0.00048 1E-08 59.7 2.7 77 105-183 80-162 (498)
115 KOG4307|consensus 97.0 0.0025 5.5E-08 59.6 7.4 75 103-180 865-943 (944)
116 KOG0129|consensus 96.9 0.0029 6.2E-08 57.3 7.2 60 103-163 257-326 (520)
117 KOG2193|consensus 96.9 0.00075 1.6E-08 59.8 3.3 73 106-184 2-76 (584)
118 KOG2253|consensus 96.9 0.0015 3.3E-08 60.6 5.0 65 102-171 37-101 (668)
119 KOG1996|consensus 96.7 0.0052 1.1E-07 52.2 6.5 59 120-181 301-364 (378)
120 KOG0112|consensus 96.7 0.00037 8.1E-09 66.5 -0.6 79 100-181 367-448 (975)
121 PF10309 DUF2414: Protein of u 96.6 0.01 2.3E-07 39.1 6.1 54 106-163 6-62 (62)
122 KOG2202|consensus 96.3 0.002 4.4E-08 53.6 1.6 59 121-182 84-146 (260)
123 KOG4574|consensus 96.2 0.017 3.6E-07 55.4 7.4 75 107-184 300-374 (1007)
124 PF08675 RNA_bind: RNA binding 96.2 0.034 7.5E-07 38.8 7.0 55 106-165 10-64 (87)
125 KOG0105|consensus 96.1 0.058 1.3E-06 43.2 8.9 71 105-179 115-185 (241)
126 KOG2068|consensus 96.1 0.0024 5.2E-08 55.0 1.1 76 106-184 78-163 (327)
127 KOG1365|consensus 95.9 0.019 4.1E-07 50.6 6.0 74 105-181 280-359 (508)
128 KOG0115|consensus 95.9 0.0077 1.7E-07 50.2 3.5 76 106-181 32-111 (275)
129 KOG0128|consensus 95.9 0.0048 1E-07 58.9 2.2 76 105-183 736-814 (881)
130 KOG1365|consensus 95.4 0.062 1.3E-06 47.4 7.1 56 107-162 163-225 (508)
131 PF04847 Calcipressin: Calcipr 95.4 0.052 1.1E-06 43.6 6.2 61 118-183 8-70 (184)
132 PF15023 DUF4523: Protein of u 95.3 0.12 2.5E-06 39.8 7.6 77 102-185 83-163 (166)
133 PF07576 BRAP2: BRCA1-associat 95.3 0.42 9.1E-06 35.1 10.3 76 106-181 13-92 (110)
134 KOG4307|consensus 95.2 0.039 8.5E-07 52.0 5.5 76 103-181 432-511 (944)
135 KOG4285|consensus 94.6 0.23 5E-06 42.6 8.3 57 110-170 202-258 (350)
136 PF03467 Smg4_UPF3: Smg-4/UPF3 94.6 0.096 2.1E-06 41.7 5.8 81 104-184 6-98 (176)
137 KOG0128|consensus 94.0 0.0048 1E-07 58.9 -3.2 63 104-166 666-732 (881)
138 KOG2591|consensus 94.0 0.21 4.5E-06 46.1 7.1 63 105-170 175-246 (684)
139 PF03880 DbpA: DbpA RNA bindin 93.8 0.43 9.3E-06 32.2 7.0 67 107-181 2-74 (74)
140 PF11767 SET_assoc: Histone ly 92.0 0.88 1.9E-05 30.3 6.2 51 116-171 11-61 (66)
141 KOG2135|consensus 91.6 0.12 2.7E-06 46.6 2.3 74 105-184 372-446 (526)
142 KOG2318|consensus 91.6 0.86 1.9E-05 42.4 7.6 80 102-182 171-306 (650)
143 KOG4410|consensus 90.9 0.4 8.6E-06 40.9 4.5 50 105-155 330-379 (396)
144 KOG0804|consensus 89.0 2.5 5.3E-05 38.3 8.2 66 105-170 74-142 (493)
145 KOG4210|consensus 84.0 0.87 1.9E-05 39.0 2.6 65 104-168 87-155 (285)
146 KOG2193|consensus 83.1 0.056 1.2E-06 48.3 -5.0 76 105-183 80-156 (584)
147 KOG4676|consensus 81.8 0.3 6.5E-06 43.3 -1.1 63 105-168 151-213 (479)
148 KOG4483|consensus 80.3 7.1 0.00015 35.0 6.9 54 105-161 391-445 (528)
149 KOG4660|consensus 74.4 5.4 0.00012 37.0 4.6 79 106-184 362-473 (549)
150 KOG4019|consensus 68.3 6.2 0.00013 31.6 3.2 75 106-184 11-90 (193)
151 PF08544 GHMP_kinases_C: GHMP 65.3 29 0.00062 23.0 5.8 44 120-164 37-80 (85)
152 KOG2891|consensus 63.1 3.8 8.1E-05 35.1 1.1 79 106-184 150-268 (445)
153 PF10567 Nab6_mRNP_bdg: RNA-re 61.5 15 0.00033 31.6 4.5 80 102-182 12-106 (309)
154 KOG4454|consensus 58.9 2.5 5.4E-05 34.9 -0.6 67 103-169 78-151 (267)
155 KOG4365|consensus 54.9 2.5 5.4E-05 38.3 -1.3 79 106-188 4-86 (572)
156 KOG2295|consensus 54.6 2.4 5.1E-05 39.4 -1.5 66 105-170 231-300 (648)
157 PF15513 DUF4651: Domain of un 53.9 26 0.00057 23.0 3.7 19 120-138 9-27 (62)
158 PF00403 HMA: Heavy-metal-asso 53.5 53 0.0011 20.5 6.5 54 107-162 1-58 (62)
159 PF09707 Cas_Cas2CT1978: CRISP 52.4 35 0.00076 23.9 4.4 48 105-152 25-73 (86)
160 PF08734 GYD: GYD domain; Int 47.2 79 0.0017 22.0 5.7 47 118-164 21-68 (91)
161 PF07292 NID: Nmi/IFP 35 domai 46.3 13 0.00029 26.1 1.6 24 104-127 51-74 (88)
162 PF14893 PNMA: PNMA 44.3 23 0.00051 31.0 3.1 51 103-153 16-72 (331)
163 PF11411 DNA_ligase_IV: DNA li 42.9 16 0.00034 21.3 1.2 17 115-131 19-35 (36)
164 PRK14548 50S ribosomal protein 42.3 79 0.0017 22.0 4.9 56 107-162 22-80 (84)
165 COG0724 RNA-binding proteins ( 41.1 44 0.00096 26.3 4.1 39 102-140 222-260 (306)
166 PF03468 XS: XS domain; Inter 40.7 18 0.0004 26.6 1.6 42 118-160 30-74 (116)
167 PF03439 Spt5-NGN: Early trans 39.7 72 0.0016 21.8 4.4 37 131-168 33-69 (84)
168 cd04889 ACT_PDH-BS-like C-term 37.5 95 0.0021 18.8 4.8 41 120-160 13-55 (56)
169 TIGR03636 L23_arch archaeal ri 36.4 1.2E+02 0.0026 20.7 5.0 55 107-161 15-72 (77)
170 PRK11558 putative ssRNA endonu 36.4 65 0.0014 23.1 3.8 48 105-153 27-76 (97)
171 COG0150 PurM Phosphoribosylami 34.4 9.8 0.00021 33.4 -0.8 48 119-166 275-322 (345)
172 KOG4008|consensus 33.5 27 0.0006 29.2 1.7 35 103-137 38-72 (261)
173 PRK11634 ATP-dependent RNA hel 33.3 2.5E+02 0.0055 26.8 8.4 68 106-182 487-561 (629)
174 PF02714 DUF221: Domain of unk 31.9 41 0.00088 28.8 2.6 21 146-166 1-21 (325)
175 KOG0862|consensus 31.0 37 0.00079 27.9 2.0 30 120-153 89-119 (216)
176 KOG0226|consensus 30.3 1.7E+02 0.0037 24.9 5.8 66 105-170 96-167 (290)
177 PF08206 OB_RNB: Ribonuclease 30.1 15 0.00032 23.4 -0.3 12 141-152 6-17 (58)
178 PF12829 Mhr1: Transcriptional 29.7 1.3E+02 0.0029 21.2 4.5 55 112-166 19-74 (91)
179 COG5638 Uncharacterized conser 24.8 90 0.002 28.4 3.5 79 102-181 143-295 (622)
180 KOG1295|consensus 23.8 1.5E+02 0.0033 26.5 4.7 66 106-171 8-80 (376)
181 cd04908 ACT_Bt0572_1 N-termina 23.6 2E+02 0.0043 18.1 8.2 42 120-161 16-58 (66)
182 PHA01632 hypothetical protein 23.2 77 0.0017 20.4 2.0 20 109-128 20-39 (64)
183 cd04879 ACT_3PGDH-like ACT_3PG 22.9 1.9E+02 0.0041 17.6 5.8 49 115-164 9-60 (71)
184 PRK11901 hypothetical protein; 22.3 1.3E+02 0.0028 26.4 3.9 57 105-165 245-306 (327)
185 TIGR01873 cas_CT1978 CRISPR-as 22.1 1.7E+02 0.0036 20.5 3.8 47 105-152 25-74 (87)
186 PF08156 NOP5NT: NOP5NT (NUC12 22.0 28 0.00061 23.0 -0.1 39 120-164 27-65 (67)
187 PRK08559 nusG transcription an 21.9 2.9E+02 0.0063 21.1 5.6 35 132-167 36-70 (153)
188 KOG2855|consensus 21.7 1.2E+02 0.0027 26.6 3.7 47 104-150 60-107 (330)
189 PF00313 CSD: 'Cold-shock' DNA 21.3 88 0.0019 19.9 2.2 15 140-154 9-23 (66)
190 PF13046 DUF3906: Protein of u 20.7 1.5E+02 0.0033 19.5 3.1 32 117-148 30-63 (64)
191 COG5353 Uncharacterized protei 20.6 3E+02 0.0065 21.4 5.2 49 106-154 88-153 (161)
192 PRK11230 glycolate oxidase sub 20.5 2.8E+02 0.0061 25.6 6.1 61 105-165 189-256 (499)
193 PRK15464 cold shock-like prote 20.4 72 0.0015 21.3 1.6 13 140-152 13-25 (70)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=1.4e-17 Score=128.55 Aligned_cols=81 Identities=20% Similarity=0.348 Sum_probs=73.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...++|||+||+.+++|++|+++|++||.|++++|+.+ .++|||||+|.+.++|++|++.||+..|.+ +.|+|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G---r~l~V 108 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG---RHIRV 108 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEE
Confidence 34679999999999999999999999999999999876 467999999999999999999999999955 69999
Q ss_pred EeccCccc
Q psy11527 179 EYAKTKMA 186 (206)
Q Consensus 179 ~~ak~~~~ 186 (206)
++++.+..
T Consensus 109 ~~a~~~~~ 116 (144)
T PLN03134 109 NPANDRPS 116 (144)
T ss_pred EeCCcCCC
Confidence 99976543
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=1.1e-16 Score=139.21 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=72.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
..+++|||+||++++++++|+++|++||.|++++|+.+ .++|||||+|.+.++|.+|+..|||..+.+ |.|+|
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g---r~i~V 343 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN---RVLQV 343 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC---eEEEE
Confidence 34568999999999999999999999999999999876 468999999999999999999999999954 69999
Q ss_pred EeccCc
Q psy11527 179 EYAKTK 184 (206)
Q Consensus 179 ~~ak~~ 184 (206)
.|+..+
T Consensus 344 ~~~~~~ 349 (352)
T TIGR01661 344 SFKTNK 349 (352)
T ss_pred EEccCC
Confidence 998765
No 3
>KOG0125|consensus
Probab=99.71 E-value=5e-17 Score=137.05 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC--CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK--GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~--~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
.-++|+|+|||+...|.||+.+|++||+|.+|.|+.+ ++||||||+|++.++|++|-.+|||..| +||+|.|+.+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~V---EGRkIEVn~A 171 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVV---EGRKIEVNNA 171 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhccee---eceEEEEecc
Confidence 3489999999999999999999999999999999886 7899999999999999999999999999 5689999999
Q ss_pred cCccccccc
Q psy11527 182 KTKMAEFTT 190 (206)
Q Consensus 182 k~~~~~~~~ 190 (206)
..+-..+++
T Consensus 172 TarV~n~K~ 180 (376)
T KOG0125|consen 172 TARVHNKKK 180 (376)
T ss_pred chhhccCCc
Confidence 876444433
No 4
>KOG0146|consensus
Probab=99.70 E-value=2.6e-17 Score=135.73 Aligned_cols=85 Identities=16% Similarity=0.269 Sum_probs=78.4
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCc
Q psy11527 99 MNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRG 174 (206)
Q Consensus 99 ~~~~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~ 174 (206)
..+++++|+|||..||.++.+.||.++|-.||.|++.+++.| .+|+|+||.|+|+.+|+.||+.|||+.|..|
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK--- 355 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK--- 355 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhh---
Confidence 456889999999999999999999999999999999988776 6889999999999999999999999999887
Q ss_pred eEEEEeccCccc
Q psy11527 175 AIRIEYAKTKMA 186 (206)
Q Consensus 175 ~l~V~~ak~~~~ 186 (206)
+|||++.+++..
T Consensus 356 RLKVQLKRPkda 367 (371)
T KOG0146|consen 356 RLKVQLKRPKDA 367 (371)
T ss_pred hhhhhhcCcccc
Confidence 999999887654
No 5
>KOG0107|consensus
Probab=99.67 E-value=2.7e-16 Score=122.39 Aligned_cols=80 Identities=23% Similarity=0.398 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
...++||||||+..+++.||+.+|..||.|.+|+|.. ...|||||||+++.+|+.|+..|||..|.+ ..|+|++++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG---~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICG---SRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccC---ceEEEEeec
Confidence 3468999999999999999999999999999999987 567899999999999999999999999966 499999998
Q ss_pred Cccc
Q psy11527 183 TKMA 186 (206)
Q Consensus 183 ~~~~ 186 (206)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 7654
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=5.1e-16 Score=135.58 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=73.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceE
Q psy11527 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAI 176 (206)
Q Consensus 101 ~~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l 176 (206)
+....++|||+||+.+++|++|+++|+.||.|++|+|+.| .++|||||+|.++++|++||..|||..+.+ ++|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g---r~i 179 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN---KRL 179 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC---cee
Confidence 3456789999999999999999999999999999999876 466899999999999999999999999966 499
Q ss_pred EEEeccCc
Q psy11527 177 RIEYAKTK 184 (206)
Q Consensus 177 ~V~~ak~~ 184 (206)
+|.+++..
T Consensus 180 ~V~~a~p~ 187 (346)
T TIGR01659 180 KVSYARPG 187 (346)
T ss_pred eeeccccc
Confidence 99998754
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.65 E-value=5.7e-16 Score=134.77 Aligned_cols=78 Identities=24% Similarity=0.396 Sum_probs=71.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
.++|||+|||.+++|+||+++|+.||.|++|+|+++ .++|||||+|.+.++|++||..|||..+.+ +.|+|++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g---~~i~v~~ 79 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQN---KTIKVSY 79 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECC---eeEEEEe
Confidence 579999999999999999999999999999999876 366899999999999999999999999965 5999999
Q ss_pred ccCcc
Q psy11527 181 AKTKM 185 (206)
Q Consensus 181 ak~~~ 185 (206)
++...
T Consensus 80 a~~~~ 84 (352)
T TIGR01661 80 ARPSS 84 (352)
T ss_pred ecccc
Confidence 87654
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=9.1e-16 Score=102.64 Aligned_cols=67 Identities=30% Similarity=0.511 Sum_probs=61.0
Q ss_pred EEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 108 LFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 108 LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
|||+|||.++++++|+++|+.||.|..+++..+ ..+++|||+|.+.++|++|+..|||..+.+ +.||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~---~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING---RKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT---EEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc---cCcC
Confidence 799999999999999999999999999999874 455799999999999999999999999955 5765
No 9
>KOG0121|consensus
Probab=99.63 E-value=6.6e-16 Score=114.67 Aligned_cols=79 Identities=24% Similarity=0.415 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCC----CCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGG----SPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~----~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
...++|||||||++.++|++|.+||+.+|.|++|.|-.|+. .|||||+|.+.++|+.|++.++|+.+.. +.|+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd---r~ir 109 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD---RPIR 109 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc---ccee
Confidence 34578999999999999999999999999999999866632 3799999999999999999999999965 5999
Q ss_pred EEeccC
Q psy11527 178 IEYAKT 183 (206)
Q Consensus 178 V~~ak~ 183 (206)
|.|.-.
T Consensus 110 ~D~D~G 115 (153)
T KOG0121|consen 110 IDWDAG 115 (153)
T ss_pred eecccc
Confidence 998753
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.63 E-value=2.7e-15 Score=131.04 Aligned_cols=82 Identities=20% Similarity=0.342 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..++|||+||+.++++++|+++|++||.|++++|+.+ ..++||||+|.+.++|++||+.||+..+.+ .++.|+|.
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g-~~~~l~V~ 270 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEG-GSQPLTVR 270 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCC-CceeEEEE
Confidence 3568999999999999999999999999999999876 346899999999999999999999998876 35799999
Q ss_pred eccCccc
Q psy11527 180 YAKTKMA 186 (206)
Q Consensus 180 ~ak~~~~ 186 (206)
+++.+..
T Consensus 271 ~a~~~~~ 277 (346)
T TIGR01659 271 LAEEHGK 277 (346)
T ss_pred ECCcccc
Confidence 9986533
No 11
>KOG0122|consensus
Probab=99.62 E-value=4.1e-15 Score=121.16 Aligned_cols=81 Identities=23% Similarity=0.380 Sum_probs=74.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceE
Q psy11527 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAI 176 (206)
Q Consensus 101 ~~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l 176 (206)
+..+.++|-|.||+.+++|++|++||.+||.|.++.|.+| ..+|||||.|.++++|.+||..|||+-++. -.|
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~---LIL 261 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN---LIL 261 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce---EEE
Confidence 4456789999999999999999999999999999999987 467899999999999999999999999966 499
Q ss_pred EEEeccCc
Q psy11527 177 RIEYAKTK 184 (206)
Q Consensus 177 ~V~~ak~~ 184 (206)
+|+|++++
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 99999875
No 12
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.61 E-value=4.5e-15 Score=123.47 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=69.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC-CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG-GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~-~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
.++|||+||++.+++++|+++|+.||.|++|+|..++ .+|||||+|.+.++|+.|| .|||..|.+ +.|+|+++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~g---r~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVD---QSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCC---ceEEEEeccC
Confidence 4799999999999999999999999999999998874 5789999999999999999 699999955 5999999863
No 13
>KOG0144|consensus
Probab=99.57 E-value=3e-15 Score=130.25 Aligned_cols=89 Identities=20% Similarity=0.348 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
..+.++||||-|+..++|.|++++|++||.|++|+|++| .+||||||+|.+.+.|..||+.|||.....-+..+|.|
T Consensus 121 ~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 121 IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 345689999999999999999999999999999999996 68899999999999999999999999776546789999
Q ss_pred EeccCccccccc
Q psy11527 179 EYAKTKMAEFTT 190 (206)
Q Consensus 179 ~~ak~~~~~~~~ 190 (206)
.|++.++.+.++
T Consensus 201 kFADtqkdk~~~ 212 (510)
T KOG0144|consen 201 KFADTQKDKDGK 212 (510)
T ss_pred EecccCCCchHH
Confidence 999887655443
No 14
>KOG0148|consensus
Probab=99.56 E-value=2e-14 Score=118.73 Aligned_cols=84 Identities=17% Similarity=0.343 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
.++++++||||+...++|++|++.|+.||.|.+|++++ .+||+||.|++.|+|..||..+|+..|.+. .+|+.|.
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~---~VkCsWG 235 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQ---LVRCSWG 235 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCce---EEEEecc
Confidence 45789999999999999999999999999999999986 567999999999999999999999999664 9999999
Q ss_pred cCccccccc
Q psy11527 182 KTKMAEFTT 190 (206)
Q Consensus 182 k~~~~~~~~ 190 (206)
|.....+..
T Consensus 236 Ke~~~~~~~ 244 (321)
T KOG0148|consen 236 KEGDDGINN 244 (321)
T ss_pred ccCCCCCCc
Confidence 876544433
No 15
>PLN03213 repressor of silencing 3; Provisional
Probab=99.55 E-value=1.1e-14 Score=128.62 Aligned_cols=82 Identities=24% Similarity=0.380 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCH--HHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDV--NFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~--~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
.....+||||||++.++++||+.+|+.||.|.+|.|++..+||||||+|.+. .++.+||..|||..++| |.|+|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG---R~LKVN 83 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG---GRLRLE 83 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC---ceeEEe
Confidence 3345799999999999999999999999999999999887799999999987 78999999999999965 699999
Q ss_pred eccCccc
Q psy11527 180 YAKTKMA 186 (206)
Q Consensus 180 ~ak~~~~ 186 (206)
.|+...-
T Consensus 84 KAKP~YL 90 (759)
T PLN03213 84 KAKEHYL 90 (759)
T ss_pred eccHHHH
Confidence 9987643
No 16
>KOG0148|consensus
Probab=99.55 E-value=1.8e-14 Score=119.09 Aligned_cols=83 Identities=22% Similarity=0.423 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
...+--+||+.|..+++-++||+.|.+||+|.++++++| ++|||+||.|-+.++|++||+.|||..| ++|.||
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl---G~R~IR 135 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL---GRRTIR 135 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee---ccceee
Confidence 334678999999999999999999999999999999998 7889999999999999999999999999 568999
Q ss_pred EEeccCcccc
Q psy11527 178 IEYAKTKMAE 187 (206)
Q Consensus 178 V~~ak~~~~~ 187 (206)
.+|+.++..+
T Consensus 136 TNWATRKp~e 145 (321)
T KOG0148|consen 136 TNWATRKPSE 145 (321)
T ss_pred ccccccCccc
Confidence 9999987633
No 17
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=4.2e-14 Score=116.12 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=67.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC-CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~-~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
.+.+|||+||++++++++|+++|+.||.|.+|+|.++ ..++||||+|.++++|+.|+ .|+|..|.++ .|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~---~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQ---RVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCc---eEEEEeCc
Confidence 4589999999999999999999999999999999987 34579999999999999999 8999999765 88887643
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.53 E-value=4e-14 Score=130.68 Aligned_cols=78 Identities=21% Similarity=0.334 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...++|||+||+.++++++|+++|+.||.|++|+|.+| .++|||||+|.+.++|++|+..|||..+.+ |.|+|
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~G---R~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG---RNIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEec---ceeee
Confidence 35679999999999999999999999999999999876 578999999999999999999999999955 69999
Q ss_pred EeccC
Q psy11527 179 EYAKT 183 (206)
Q Consensus 179 ~~ak~ 183 (206)
.+...
T Consensus 182 ~rp~~ 186 (612)
T TIGR01645 182 GRPSN 186 (612)
T ss_pred ccccc
Confidence 86543
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.53 E-value=1.9e-13 Score=124.44 Aligned_cols=79 Identities=28% Similarity=0.359 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 102 MSPCSTLFVANLGQ-FVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 102 ~~~~~~LfV~nL~~-~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
.+++++|||+||++ .+++++|+++|+.||.|.+|+++++ ++|||||+|.+.++|++|+..|||..|.+ +.|+|.+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g---~~l~v~~ 347 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFG---KPLRVCP 347 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECC---ceEEEEE
Confidence 44678999999998 6999999999999999999999875 57999999999999999999999999965 5999999
Q ss_pred ccCc
Q psy11527 181 AKTK 184 (206)
Q Consensus 181 ak~~ 184 (206)
++.+
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8764
No 20
>KOG0105|consensus
Probab=99.52 E-value=3.6e-14 Score=111.61 Aligned_cols=78 Identities=27% Similarity=0.496 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC-CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~-~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
..++|||||||.++.|.||++||-+||.|..|.|... +.-+||||+|++..+|+.||..-+|..+ ++++|+|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdy---dg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDY---DGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhccccccc---CcceEEEEecc
Confidence 4579999999999999999999999999999998643 3357999999999999999999999999 56899999997
Q ss_pred Cc
Q psy11527 183 TK 184 (206)
Q Consensus 183 ~~ 184 (206)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 64
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.52 E-value=5.7e-14 Score=129.69 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..++|||+||+.++++++|+++|+.||.|++++|.++ .++|||||+|.+.++|.+|+..|||..|.| +.|+|.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgG---r~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGG---QYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCC---eEEEEE
Confidence 4579999999999999999999999999999999876 467999999999999999999999999955 599999
Q ss_pred eccCcc
Q psy11527 180 YAKTKM 185 (206)
Q Consensus 180 ~ak~~~ 185 (206)
++....
T Consensus 280 kAi~pP 285 (612)
T TIGR01645 280 KCVTPP 285 (612)
T ss_pred ecCCCc
Confidence 988643
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.52 E-value=5.4e-14 Score=129.94 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=69.5
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 107 ~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
+|||+||+.+++|++|+++|+.||.|.+|+|.+| +++|||||+|.+.++|++|+..||+..+.+ +.|+|.|++
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~g---k~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGG---KPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---eeEEeeccc
Confidence 7999999999999999999999999999999876 356899999999999999999999999966 599999987
Q ss_pred Ccc
Q psy11527 183 TKM 185 (206)
Q Consensus 183 ~~~ 185 (206)
.+.
T Consensus 79 ~~~ 81 (562)
T TIGR01628 79 RDP 81 (562)
T ss_pred ccc
Confidence 543
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.51 E-value=6.5e-14 Score=129.44 Aligned_cols=80 Identities=16% Similarity=0.350 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..+++|||+||+.++++++|+++|+.||.|.+|+++.+ .++|||||+|.+.++|++|+..|||..+.+ +.|+|.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g---k~l~V~ 359 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGG---KPLYVA 359 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC---ceeEEE
Confidence 35678999999999999999999999999999999876 467899999999999999999999999965 599999
Q ss_pred eccCcc
Q psy11527 180 YAKTKM 185 (206)
Q Consensus 180 ~ak~~~ 185 (206)
+++.+.
T Consensus 360 ~a~~k~ 365 (562)
T TIGR01628 360 LAQRKE 365 (562)
T ss_pred eccCcH
Confidence 998764
No 24
>KOG4207|consensus
Probab=99.51 E-value=4e-14 Score=113.03 Aligned_cols=81 Identities=20% Similarity=0.332 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
...-.+|-|.||...++.++|+.+|++||.|-+|.|.+| ..+|||||.|.+..+|+.|+.+|+|.+|+ |+.|+
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld---gRelr 86 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD---GRELR 86 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec---cceee
Confidence 444579999999999999999999999999999999887 67899999999999999999999999995 56999
Q ss_pred EEeccCcc
Q psy11527 178 IEYAKTKM 185 (206)
Q Consensus 178 V~~ak~~~ 185 (206)
|++++...
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99998653
No 25
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.51 E-value=1.2e-13 Score=92.96 Aligned_cols=67 Identities=24% Similarity=0.484 Sum_probs=58.5
Q ss_pred EEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC---CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 108 LFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG---GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 108 LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~---~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
|||+|||+.+++++|+++|+.||.|..+++..++ .+++|||+|.+.++|.+|++.++|..+.+ +.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g---~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG---RKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT---EEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC---EEcC
Confidence 7999999999999999999999999999998763 36799999999999999999999999955 4664
No 26
>KOG0114|consensus
Probab=99.50 E-value=2.1e-13 Score=97.97 Aligned_cols=79 Identities=23% Similarity=0.396 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC-CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~-~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
..++.|||.|||+++|.++..++|++||.|..|+|-.. ..+|-|||.|++..+|.+|++.|+|..+.+ +.|.|-+-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~---ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN---RYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC---ceEEEEec
Confidence 35689999999999999999999999999999999654 678999999999999999999999999954 69999876
Q ss_pred cCc
Q psy11527 182 KTK 184 (206)
Q Consensus 182 k~~ 184 (206)
...
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 543
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.49 E-value=2e-13 Score=125.73 Aligned_cols=77 Identities=30% Similarity=0.419 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCC--CCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSF--PGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~--G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
...++|||+||+.++++++|+++|+.| |.|++|++++ +||||+|.+.++|++|+..|||..|.+ +.|+|+|
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r----gfAFVeF~s~e~A~kAi~~lnG~~i~G---r~I~V~~ 303 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR----DYAFVHFEDREDAVKAMDELNGKELEG---SEIEVTL 303 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec----CeEEEEeCCHHHHHHHHHHhCCCEECC---EEEEEEE
Confidence 345799999999999999999999999 9999998764 499999999999999999999999955 6999999
Q ss_pred ccCccc
Q psy11527 181 AKTKMA 186 (206)
Q Consensus 181 ak~~~~ 186 (206)
++....
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987543
No 28
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.49 E-value=1.4e-13 Score=125.21 Aligned_cols=79 Identities=25% Similarity=0.323 Sum_probs=72.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccCc
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~~ 184 (206)
..+|||+||+..+++++|+++|+.||.|.+|+|.++..+++|||+|.+.++|.+|++.|||..|.+ +++.|+|+|++..
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~-~~~~l~v~~sk~~ 174 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYN-GCCTLKIEYAKPT 174 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccC-CceEEEEEEecCC
Confidence 357999999999999999999999999999999887666899999999999999999999999987 3679999999863
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.49 E-value=1.4e-13 Score=126.70 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=68.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
..++|||+||+.+++|++|+++|++||.|.+++|++| .++|||||+|.+.++|++||+.||+..+.. ++.|.|..
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~--Gr~l~V~~ 134 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP--GRLLGVCI 134 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecC--Cccccccc
Confidence 4589999999999999999999999999999999876 577999999999999999999999999863 35666665
Q ss_pred cc
Q psy11527 181 AK 182 (206)
Q Consensus 181 ak 182 (206)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 53
No 30
>KOG0145|consensus
Probab=99.48 E-value=3.7e-13 Score=110.93 Aligned_cols=84 Identities=23% Similarity=0.400 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...++|.|--||+.+|++|||.+|+..|+|++|++++|+ +-||+||.|-++++|++|+..|||.++..| .|||
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~K---TIKV 115 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNK---TIKV 115 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccc---eEEE
Confidence 345678899999999999999999999999999999983 447999999999999999999999999887 9999
Q ss_pred EeccCcccccc
Q psy11527 179 EYAKTKMAEFT 189 (206)
Q Consensus 179 ~~ak~~~~~~~ 189 (206)
.|+++.+...+
T Consensus 116 SyARPSs~~Ik 126 (360)
T KOG0145|consen 116 SYARPSSDSIK 126 (360)
T ss_pred EeccCChhhhc
Confidence 99998765544
No 31
>KOG0149|consensus
Probab=99.48 E-value=6.7e-14 Score=113.61 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=64.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
-++||||+|++++..++|++.|++||+|++..++.| ++|||+||+|.|.++|++|++.-| -.| |||+-.+++
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piI---dGR~aNcnl 87 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PII---DGRKANCNL 87 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccc---cccccccch
Confidence 368999999999999999999999999999998887 688999999999999999986544 345 467888877
Q ss_pred ccC
Q psy11527 181 AKT 183 (206)
Q Consensus 181 ak~ 183 (206)
+.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 643
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=99.47 E-value=3.3e-13 Score=89.16 Aligned_cols=69 Identities=32% Similarity=0.547 Sum_probs=62.2
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC--CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG--GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 107 ~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~--~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
+|||+||+..+++++|+++|+.||.|..+++..+. .+++|||+|.+.++|++|+..++|..+.+ +.|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~---~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGG---RPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECC---EEEee
Confidence 58999999999999999999999999999988753 46899999999999999999999999955 47776
No 33
>KOG0117|consensus
Probab=99.47 E-value=1.6e-13 Score=119.90 Aligned_cols=82 Identities=29% Similarity=0.435 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
....+.|||.||+.++||+.|+++|+.||.|.+|+.++| ||||.|.++++|.+|++.+||+.|.+. .|.|.+|
T Consensus 256 ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~---~iEvtLA 328 (506)
T KOG0117|consen 256 MSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGS---PIEVTLA 328 (506)
T ss_pred hhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCc---eEEEEec
Confidence 445689999999999999999999999999999998765 999999999999999999999999665 9999999
Q ss_pred cCccccccc
Q psy11527 182 KTKMAEFTT 190 (206)
Q Consensus 182 k~~~~~~~~ 190 (206)
|+...++..
T Consensus 329 KP~~k~k~~ 337 (506)
T KOG0117|consen 329 KPVDKKKKE 337 (506)
T ss_pred CChhhhccc
Confidence 987655444
No 34
>KOG0109|consensus
Probab=99.47 E-value=6.4e-14 Score=116.83 Aligned_cols=74 Identities=27% Similarity=0.418 Sum_probs=69.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccCcc
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTKM 185 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~~~ 185 (206)
.+|||||||.++++.+|+.||++||+|.+|+|+++ ||||..++...|+.||+.|||..|.+. .|+|+-+|.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg~---nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHGV---NINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecce---EEEEEeccccC
Confidence 48999999999999999999999999999999875 999999999999999999999999776 99999998874
Q ss_pred c
Q psy11527 186 A 186 (206)
Q Consensus 186 ~ 186 (206)
.
T Consensus 76 k 76 (346)
T KOG0109|consen 76 K 76 (346)
T ss_pred C
Confidence 3
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.46 E-value=4.8e-13 Score=121.90 Aligned_cols=78 Identities=22% Similarity=0.374 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..++|||+||+..+++++|+++|+.||.|..+.|+.+ .++|||||+|.+.++|..|+..|||..|.+ +.|+|.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~---~~l~v~ 370 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD---NKLHVQ 370 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEE
Confidence 4579999999999999999999999999999999875 367899999999999999999999999966 599999
Q ss_pred eccCc
Q psy11527 180 YAKTK 184 (206)
Q Consensus 180 ~ak~~ 184 (206)
++...
T Consensus 371 ~a~~~ 375 (509)
T TIGR01642 371 RACVG 375 (509)
T ss_pred ECccC
Confidence 98654
No 36
>KOG0111|consensus
Probab=99.46 E-value=5.7e-14 Score=113.17 Aligned_cols=81 Identities=25% Similarity=0.362 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..++||||+|-.+++|..|...|-+||.|.+|.+..| +.+||+||+|...++|..||..||+..+.+ |.|+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G---rtirVN 85 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG---RTIRVN 85 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc---eeEEEe
Confidence 3589999999999999999999999999999999876 788999999999999999999999999976 699999
Q ss_pred eccCcccc
Q psy11527 180 YAKTKMAE 187 (206)
Q Consensus 180 ~ak~~~~~ 187 (206)
++++...+
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99986543
No 37
>KOG0144|consensus
Probab=99.46 E-value=3.3e-13 Score=117.58 Aligned_cols=85 Identities=15% Similarity=0.334 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
.+.-+||||-+|..++|.|||++|++||.|.+|.|++| .++|||||.|.++++|.+|+.+|+..+...-.-.+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 34568999999999999999999999999999999988 46789999999999999999999988776435679999
Q ss_pred EeccCcccc
Q psy11527 179 EYAKTKMAE 187 (206)
Q Consensus 179 ~~ak~~~~~ 187 (206)
.+++.+...
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 999876543
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.45 E-value=3.9e-13 Score=121.08 Aligned_cols=76 Identities=32% Similarity=0.531 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
.++|||+||+..+++++|+++|+.||.|..|+|..+ ..+|||||+|.+.++|.+|+..|||..|.+ +.|+|.|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g---~~i~v~~ 262 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAG---RPIKVGY 262 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECC---EEEEEEE
Confidence 689999999999999999999999999999999875 356899999999999999999999999955 6999999
Q ss_pred ccC
Q psy11527 181 AKT 183 (206)
Q Consensus 181 ak~ 183 (206)
++.
T Consensus 263 a~~ 265 (457)
T TIGR01622 263 AQD 265 (457)
T ss_pred ccC
Confidence 763
No 39
>KOG0113|consensus
Probab=99.42 E-value=1e-12 Score=109.95 Aligned_cols=80 Identities=25% Similarity=0.368 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
.++-+||||+-|+.+++|..|++.|+.||.|+.|.|+.+ .++|||||+|.+..+...|.+..+|.+|.+ +.|.
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg---rri~ 174 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG---RRIL 174 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC---cEEE
Confidence 456789999999999999999999999999999999987 678999999999999999999999999955 6999
Q ss_pred EEeccCc
Q psy11527 178 IEYAKTK 184 (206)
Q Consensus 178 V~~ak~~ 184 (206)
|.+-..+
T Consensus 175 VDvERgR 181 (335)
T KOG0113|consen 175 VDVERGR 181 (335)
T ss_pred EEecccc
Confidence 9887543
No 40
>KOG4206|consensus
Probab=99.42 E-value=6.2e-13 Score=107.48 Aligned_cols=81 Identities=25% Similarity=0.437 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHH----HhcCCCCeeEEEEecC-CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKD----IFGSFPGFSRVRMHNK-GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~----~F~~~G~v~~v~l~~~-~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
.++.||||.||++.+..++|++ ||++||+|.+|...+. +.+|-|||.|.+.+.|..|++.|+|+.++|| .++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK---~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGK---PMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCc---hhh
Confidence 3455999999999999999998 9999999999988754 7889999999999999999999999999998 999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|+||+.++.
T Consensus 84 iqyA~s~sd 92 (221)
T KOG4206|consen 84 IQYAKSDSD 92 (221)
T ss_pred eecccCccc
Confidence 999987754
No 41
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=1.4e-12 Score=84.38 Aligned_cols=56 Identities=25% Similarity=0.543 Sum_probs=50.0
Q ss_pred HHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 122 IKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 122 L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
|+++|++||.|+++.+..+. +++|||+|.+.++|+.|++.|||..+.+ +.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g---~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNG---RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETT---EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEC
Confidence 68999999999999998654 6899999999999999999999999955 69999986
No 42
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.40 E-value=1.4e-12 Score=117.46 Aligned_cols=78 Identities=23% Similarity=0.373 Sum_probs=69.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...++|||+||+.++++++|+++|+.||.|.+|+|+.+ .++|||||+|.+.++|.+|| .|+|..+.+ +.|.|
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g---~~i~v 162 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLG---RPIIV 162 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECC---eeeEE
Confidence 35689999999999999999999999999999999875 45789999999999999999 599999965 59999
Q ss_pred EeccCc
Q psy11527 179 EYAKTK 184 (206)
Q Consensus 179 ~~ak~~ 184 (206)
.+++.+
T Consensus 163 ~~~~~~ 168 (457)
T TIGR01622 163 QSSQAE 168 (457)
T ss_pred eecchh
Confidence 887543
No 43
>KOG0131|consensus
Probab=99.40 E-value=5e-13 Score=104.82 Aligned_cols=78 Identities=24% Similarity=0.237 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
.....|||||||+..++++.|.++|-+.|.|+++++.++ ..+|||||+|.++++|+-|++.||..+++++ +||
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgr---pIr 82 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR---PIR 82 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCc---eeE
Confidence 334579999999999999999999999999999999776 4789999999999999999999999999885 999
Q ss_pred EEecc
Q psy11527 178 IEYAK 182 (206)
Q Consensus 178 V~~ak 182 (206)
|..+.
T Consensus 83 v~kas 87 (203)
T KOG0131|consen 83 VNKAS 87 (203)
T ss_pred EEecc
Confidence 99886
No 44
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=1.9e-12 Score=85.06 Aligned_cols=67 Identities=28% Similarity=0.487 Sum_probs=59.5
Q ss_pred EcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCC----CCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 110 VANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGG----SPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 110 V~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~----~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
|+||+..+++++|+++|+.||.|..+++..+.. +++|||+|.+.++|.+|+..|++..+.+ +.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~---~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG---RPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC---cEEEeC
Confidence 679999999999999999999999999887533 6899999999999999999999999955 477763
No 45
>KOG0108|consensus
Probab=99.39 E-value=9.9e-13 Score=117.25 Aligned_cols=78 Identities=28% Similarity=0.404 Sum_probs=72.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
+.+||||++++++|++|..+|+..|.|.+++++.| +.+|||||+|.+.+++++|++.|||..+. ||+|+|+|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~---gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN---GRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC---CceEEeecc
Confidence 79999999999999999999999999999999987 56789999999999999999999999994 579999998
Q ss_pred cCccc
Q psy11527 182 KTKMA 186 (206)
Q Consensus 182 k~~~~ 186 (206)
.....
T Consensus 96 ~~~~~ 100 (435)
T KOG0108|consen 96 SNRKN 100 (435)
T ss_pred cccch
Confidence 76543
No 46
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.39 E-value=4e-12 Score=84.34 Aligned_cols=71 Identities=34% Similarity=0.582 Sum_probs=63.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC---CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG---GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 107 ~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~---~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
+|+|+||+..+++++|+++|+.||.|..+.+..+. .+++|||+|.+.++|..|++.+++..+.+ +.|.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~---~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG---RPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEeC
Confidence 48999999999999999999999999999998753 37899999999999999999999999855 5888764
No 47
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.36 E-value=3.8e-12 Score=104.06 Aligned_cols=75 Identities=32% Similarity=0.521 Sum_probs=69.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
.++|||+||+.++++++|+++|..||.|.++.+..+ ..+|||||+|.+.++|..|+..++|..+.+ +.|+|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~---~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG---RPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC---ceeEeec
Confidence 589999999999999999999999999999998776 567899999999999999999999999966 5999999
Q ss_pred cc
Q psy11527 181 AK 182 (206)
Q Consensus 181 ak 182 (206)
+.
T Consensus 192 ~~ 193 (306)
T COG0724 192 AQ 193 (306)
T ss_pred cc
Confidence 65
No 48
>KOG0117|consensus
Probab=99.36 E-value=4.5e-12 Score=111.01 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
+.++-||||.||.++.|+||.-||++.|+|-+++|++| .+||||||.|.+.++|++|++.||++.|.. |+.|+|
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~--GK~igv 158 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP--GKLLGV 158 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccC--CCEeEE
Confidence 45789999999999999999999999999999999987 678999999999999999999999999974 679988
Q ss_pred EeccCc
Q psy11527 179 EYAKTK 184 (206)
Q Consensus 179 ~~ak~~ 184 (206)
..+..+
T Consensus 159 c~Svan 164 (506)
T KOG0117|consen 159 CVSVAN 164 (506)
T ss_pred EEeeec
Confidence 876543
No 49
>KOG0130|consensus
Probab=99.36 E-value=1.7e-12 Score=97.39 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
.+-.|||.++.++.+|++|.+.|..||+|+.+.+..|+ .+|||+|+|++.++|++|+..+||..+.++ .|.|.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q---~v~VD 147 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ---NVSVD 147 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC---ceeEE
Confidence 35679999999999999999999999999999997763 467999999999999999999999999887 99999
Q ss_pred eccCcccccccc
Q psy11527 180 YAKTKMAEFTTE 191 (206)
Q Consensus 180 ~ak~~~~~~~~~ 191 (206)
|+--+...++.+
T Consensus 148 w~Fv~gp~~g~r 159 (170)
T KOG0130|consen 148 WCFVKGPERGKR 159 (170)
T ss_pred EEEecCCccCcc
Confidence 987654444443
No 50
>KOG1457|consensus
Probab=99.34 E-value=2.6e-11 Score=98.12 Aligned_cols=89 Identities=31% Similarity=0.493 Sum_probs=75.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC-CC----CCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-GG----SPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAI 176 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~-~~----~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l 176 (206)
....+||||.+||.++...||..||..|-+.+.+.|... +. +.+|||+|.+..+|.+|++.|||.+++-..+..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 344689999999999999999999999988887766543 22 2699999999999999999999999998778899
Q ss_pred EEEeccCccccccc
Q psy11527 177 RIEYAKTKMAEFTT 190 (206)
Q Consensus 177 ~V~~ak~~~~~~~~ 190 (206)
+|+++|.+.+.+++
T Consensus 111 hiElAKSNtK~kr~ 124 (284)
T KOG1457|consen 111 HIELAKSNTKRKRR 124 (284)
T ss_pred EeeehhcCcccccC
Confidence 99999987554433
No 51
>KOG0126|consensus
Probab=99.34 E-value=1.8e-13 Score=107.32 Aligned_cols=75 Identities=21% Similarity=0.374 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
++.-|||||||+++||.||--+|++||+|+.|.+++| .++||||+.|+|..+..-|+..|||..|.+ |.|||.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g---RtirVD 110 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG---RTIRVD 110 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc---eeEEee
Confidence 4578999999999999999999999999999999997 578999999999999999999999999965 799998
Q ss_pred ec
Q psy11527 180 YA 181 (206)
Q Consensus 180 ~a 181 (206)
..
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 64
No 52
>KOG0146|consensus
Probab=99.34 E-value=2.5e-12 Score=106.40 Aligned_cols=82 Identities=21% Similarity=0.356 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
+.++||||-|...-+|||++++|..||.|.+|.+++. .+|||+||+|.+..+|..||+.|+|.+...--...|.|.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5689999999999999999999999999999999874 6789999999999999999999999988653456899999
Q ss_pred ccCcc
Q psy11527 181 AKTKM 185 (206)
Q Consensus 181 ak~~~ 185 (206)
++.++
T Consensus 98 ADTdk 102 (371)
T KOG0146|consen 98 ADTDK 102 (371)
T ss_pred ccchH
Confidence 98754
No 53
>KOG0109|consensus
Probab=99.25 E-value=7.7e-12 Score=104.50 Aligned_cols=76 Identities=14% Similarity=0.364 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
..++|+||||.+.++.+||+..|++||.|++|+|+++ |+||.|+-.++|..|++.||+..+.|+ +++|+++.+
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~l~~~~~~gk---~m~vq~sts 149 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRGLDNTEFQGK---RMHVQLSTS 149 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhcccccccccc---eeeeeeecc
Confidence 4679999999999999999999999999999999875 999999999999999999999999776 999999987
Q ss_pred ccc
Q psy11527 184 KMA 186 (206)
Q Consensus 184 ~~~ 186 (206)
+.+
T Consensus 150 rlr 152 (346)
T KOG0109|consen 150 RLR 152 (346)
T ss_pred ccc
Confidence 644
No 54
>KOG0132|consensus
Probab=99.22 E-value=2.2e-11 Score=112.63 Aligned_cols=75 Identities=25% Similarity=0.379 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccCc
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~~ 184 (206)
++|||||.|+..++|.||..+|+.||+|.+|.++. .++||||++....+|.+|+++|+...+..+ .|+|.|+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k---~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADK---TIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccce---eeEEeeeccC
Confidence 48999999999999999999999999999999964 778999999999999999999999999765 9999999765
No 55
>KOG0124|consensus
Probab=99.22 E-value=9.2e-12 Score=106.92 Aligned_cols=74 Identities=22% Similarity=0.348 Sum_probs=68.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
-+++|||.+.+++.|+.||..|..||.|++|.|.+| ++||||||+|+-++.|+-|+..+||..+ +||.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml---GGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML---GGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccc---cCccccccC
Confidence 479999999999999999999999999999999887 7889999999999999999999999999 457999874
Q ss_pred c
Q psy11527 181 A 181 (206)
Q Consensus 181 a 181 (206)
-
T Consensus 190 P 190 (544)
T KOG0124|consen 190 P 190 (544)
T ss_pred C
Confidence 3
No 56
>KOG0145|consensus
Probab=99.22 E-value=6.3e-11 Score=97.86 Aligned_cols=77 Identities=23% Similarity=0.380 Sum_probs=70.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
+-.|||.||.++.+|..|-++|++||.|..|++++| +=|||+||.+.+-++|.-||..|||..+.+ |.|.|.|
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~---rvLQVsF 354 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD---RVLQVSF 354 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc---eEEEEEE
Confidence 578999999999999999999999999999999997 446899999999999999999999999965 5999999
Q ss_pred ccCc
Q psy11527 181 AKTK 184 (206)
Q Consensus 181 ak~~ 184 (206)
...+
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 7654
No 57
>KOG1457|consensus
Probab=99.20 E-value=1e-11 Score=100.39 Aligned_cols=77 Identities=43% Similarity=0.859 Sum_probs=69.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
..-|.||||.||..+|+|++|+++|+.|.++..++|..+++.++||++|++.+.|..|+..|+|..|...|+..++|
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s~~drgg~~i 283 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHI 283 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceeccccCCCccc
Confidence 45689999999999999999999999999999999987778889999999999999999999999997766666655
No 58
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.18 E-value=1.2e-10 Score=106.26 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=61.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCC------------CCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSF------------PGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLA 169 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~------------G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~ 169 (206)
....++||||||+..+++++|+++|..| +.|..+.+. ..+|||||+|.+.++|..|| .|||..+.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~--~~kg~afVeF~~~e~A~~Al-~l~g~~~~ 248 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN--KEKNFAFLEFRTVEEATFAM-ALDSIIYS 248 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC--CCCCEEEEEeCCHHHHhhhh-cCCCeEee
Confidence 4456899999999999999999999864 345555553 46789999999999999999 69999996
Q ss_pred CCCCceEEEEecc
Q psy11527 170 SSDRGAIRIEYAK 182 (206)
Q Consensus 170 ~~~g~~l~V~~ak 182 (206)
+ +.|+|...+
T Consensus 249 g---~~l~v~r~~ 258 (509)
T TIGR01642 249 N---VFLKIRRPH 258 (509)
T ss_pred C---ceeEecCcc
Confidence 6 599987543
No 59
>KOG0127|consensus
Probab=99.17 E-value=7.7e-11 Score=105.58 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=70.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
.-+|.|.|||+.|.+.+|+.+|+.||.|.+|.|.++ +..|||||.|.+..+|..|+..+||..| +||+|-|.||
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i---~gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKI---DGRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCcee---cCceeEEeee
Confidence 468999999999999999999999999999999865 3458999999999999999999999999 5589999999
Q ss_pred cCcc
Q psy11527 182 KTKM 185 (206)
Q Consensus 182 k~~~ 185 (206)
-.+.
T Consensus 194 V~Kd 197 (678)
T KOG0127|consen 194 VDKD 197 (678)
T ss_pred cccc
Confidence 7654
No 60
>KOG4661|consensus
Probab=99.16 E-value=5.8e-11 Score=106.89 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
-+++|||.+|...+...||+.||++||+|+..+++.+ +.+||+||++.+.++|.+||..|+.+.|.+ +-|.|+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG---rmISVE 480 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG---RMISVE 480 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc---eeeeee
Confidence 4689999999999999999999999999999999886 567899999999999999999999999976 599999
Q ss_pred eccCccccccc
Q psy11527 180 YAKTKMAEFTT 190 (206)
Q Consensus 180 ~ak~~~~~~~~ 190 (206)
.+|.....+++
T Consensus 481 kaKNEp~Gkk~ 491 (940)
T KOG4661|consen 481 KAKNEPGGKKN 491 (940)
T ss_pred ecccCcccccc
Confidence 99876554433
No 61
>KOG0415|consensus
Probab=99.15 E-value=8.3e-11 Score=100.69 Aligned_cols=80 Identities=19% Similarity=0.380 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCC----EEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSP----VAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g----~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
.++...|||.-|++-++++||+-+|+.||.|.+|.++++...| ||||+|++.++.++|.=.|+..-|.. |+|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD---rRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD---RRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc---ceEE
Confidence 4566799999999999999999999999999999999985444 99999999999999999999999955 6999
Q ss_pred EEeccCc
Q psy11527 178 IEYAKTK 184 (206)
Q Consensus 178 V~~ak~~ 184 (206)
|.|+.+-
T Consensus 313 VDFSQSV 319 (479)
T KOG0415|consen 313 VDFSQSV 319 (479)
T ss_pred eehhhhh
Confidence 9998654
No 62
>KOG0153|consensus
Probab=99.15 E-value=1.9e-10 Score=98.21 Aligned_cols=78 Identities=23% Similarity=0.383 Sum_probs=67.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHH-hCCCeecCCCCceEEEEec
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSN-LNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~-Lng~~i~~~~g~~l~V~~a 181 (206)
...++|||++|...++|.+|++.|.+||+|+++.++. .++||||+|.+.++|+.|... +|...| +|++|+|.|.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI---~G~Rl~i~Wg 300 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVI---NGFRLKIKWG 300 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeee---cceEEEEEeC
Confidence 3468999999999999999999999999999999975 566999999999999998765 565566 4579999999
Q ss_pred cCcc
Q psy11527 182 KTKM 185 (206)
Q Consensus 182 k~~~ 185 (206)
+...
T Consensus 301 ~~~~ 304 (377)
T KOG0153|consen 301 RPKQ 304 (377)
T ss_pred CCcc
Confidence 9843
No 63
>smart00361 RRM_1 RNA recognition motif.
Probab=99.12 E-value=2.4e-10 Score=77.38 Aligned_cols=57 Identities=16% Similarity=0.362 Sum_probs=48.4
Q ss_pred HHHHHHHhc----CCCCeeEEE-EecC------CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 119 EQEIKDIFG----SFPGFSRVR-MHNK------GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 119 e~~L~~~F~----~~G~v~~v~-l~~~------~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
+++|+++|+ .||.|.++. +..+ .++||+||+|.+.++|.+|++.|||..+.+ +.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g---r~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG---RTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---EEEEe
Confidence 578899998 999999985 4433 357899999999999999999999999954 58875
No 64
>KOG0127|consensus
Probab=99.12 E-value=1.3e-10 Score=104.12 Aligned_cols=81 Identities=14% Similarity=0.204 Sum_probs=73.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
+.||||++||+.++.++|.++|+.+|.|..+.++.+ ..+||+||+|.-.+++++|+..+++..+ +||.|+|.+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf---~Gr~l~v~~ 81 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKF---EGRILNVDP 81 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcc---cceeccccc
Confidence 379999999999999999999999999999999876 4578999999999999999999999999 568999999
Q ss_pred ccCccccc
Q psy11527 181 AKTKMAEF 188 (206)
Q Consensus 181 ak~~~~~~ 188 (206)
++.+.+..
T Consensus 82 A~~R~r~e 89 (678)
T KOG0127|consen 82 AKKRARSE 89 (678)
T ss_pred ccccccch
Confidence 98875543
No 65
>KOG0147|consensus
Probab=99.06 E-value=2.9e-10 Score=101.95 Aligned_cols=76 Identities=25% Similarity=0.413 Sum_probs=68.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
..||||||.+++++++|+.+|+.||.|..|.+.++ ..+||+||+|.+.++|.+|+..|||..|- ||.|+|..-
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelA---Gr~ikV~~v 355 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELA---GRLIKVSVV 355 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceec---CceEEEEEe
Confidence 34999999999999999999999999999998876 57799999999999999999999998884 579999876
Q ss_pred cCc
Q psy11527 182 KTK 184 (206)
Q Consensus 182 k~~ 184 (206)
..+
T Consensus 356 ~~r 358 (549)
T KOG0147|consen 356 TER 358 (549)
T ss_pred eee
Confidence 544
No 66
>KOG0123|consensus
Probab=99.06 E-value=4.9e-10 Score=98.79 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=68.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC--CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK--GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~--~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
+.|||.||++.++..+|.++|+.||+|.+|++..+ +++|| ||+|+++++|++|+..+||..+.++ .|.|.....
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k---ki~vg~~~~ 152 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGK---KIYVGLFER 152 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCC---eeEEeeccc
Confidence 34999999999999999999999999999999886 78889 9999999999999999999999776 888876655
Q ss_pred c
Q psy11527 184 K 184 (206)
Q Consensus 184 ~ 184 (206)
+
T Consensus 153 ~ 153 (369)
T KOG0123|consen 153 K 153 (369)
T ss_pred h
Confidence 4
No 67
>KOG0131|consensus
Probab=99.05 E-value=3.3e-10 Score=89.09 Aligned_cols=82 Identities=27% Similarity=0.430 Sum_probs=70.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEE-EEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCce
Q psy11527 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRV-RMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGA 175 (206)
Q Consensus 101 ~~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v-~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~ 175 (206)
..+.+.+|||+||.+.++|..|.++|+.||.+.+. +++++ ..++|+||.|++.+.+.+|+..+||+.+.. |+
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~n---r~ 168 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCN---RP 168 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcC---Cc
Confidence 45566899999999999999999999999998762 44443 566799999999999999999999999955 69
Q ss_pred EEEEeccCcc
Q psy11527 176 IRIEYAKTKM 185 (206)
Q Consensus 176 l~V~~ak~~~ 185 (206)
|.|++++++.
T Consensus 169 itv~ya~k~~ 178 (203)
T KOG0131|consen 169 ITVSYAFKKD 178 (203)
T ss_pred eEEEEEEecC
Confidence 9999998764
No 68
>KOG1190|consensus
Probab=98.96 E-value=7.2e-09 Score=90.32 Aligned_cols=77 Identities=26% Similarity=0.366 Sum_probs=70.8
Q ss_pred CCEEEEcCCCCC-CcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 105 CSTLFVANLGQF-VSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 105 ~~~LfV~nL~~~-~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
+..|.|.||.++ +|.+.|..+|+.||.|.+|+|+.+ ++.-|+|.|.|...|+-|+..|+|..++++ .|||.++|.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n-kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk---~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN-KKDNALIQMSDGQQAQLAMEHLEGHKLYGK---KLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec-CCcceeeeecchhHHHHHHHHhhcceecCc---eEEEeeccC
Confidence 578999999976 999999999999999999999985 457999999999999999999999999986 999999986
Q ss_pred cc
Q psy11527 184 KM 185 (206)
Q Consensus 184 ~~ 185 (206)
..
T Consensus 373 ~~ 374 (492)
T KOG1190|consen 373 TN 374 (492)
T ss_pred cc
Confidence 53
No 69
>KOG4212|consensus
Probab=98.96 E-value=2.8e-09 Score=93.60 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=67.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhc-CCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFG-SFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~-~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
.+.+||.|+|+++.+++|++||. +.|+|.-|.++.| +.+|||.|||.++|.+++|++.||.+.+. ||+|+|.-
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~---GR~l~vKE 120 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVN---GRELVVKE 120 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcccc---CceEEEec
Confidence 46799999999999999999995 7899999999887 67799999999999999999999999994 57999876
Q ss_pred cc
Q psy11527 181 AK 182 (206)
Q Consensus 181 ak 182 (206)
..
T Consensus 121 d~ 122 (608)
T KOG4212|consen 121 DH 122 (608)
T ss_pred cC
Confidence 54
No 70
>KOG0110|consensus
Probab=98.95 E-value=2.9e-09 Score=97.99 Aligned_cols=74 Identities=20% Similarity=0.366 Sum_probs=66.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC-------CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG-------GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~-------~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
++|||.||+++++.++|+.+|...|.|.++.|.... +.|||||+|.+.++|+.|++.|+|+.|. |+.|.|
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld---GH~l~l 592 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD---GHKLEL 592 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec---CceEEE
Confidence 349999999999999999999999999999886542 3399999999999999999999999994 579999
Q ss_pred Eecc
Q psy11527 179 EYAK 182 (206)
Q Consensus 179 ~~ak 182 (206)
+++.
T Consensus 593 k~S~ 596 (725)
T KOG0110|consen 593 KISE 596 (725)
T ss_pred Eecc
Confidence 9998
No 71
>KOG4660|consensus
Probab=98.93 E-value=6.9e-10 Score=99.70 Aligned_cols=70 Identities=30% Similarity=0.420 Sum_probs=63.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..++|+|-||+..|++++|+++|+.||+|++|+..+ .+++..||+|.|..+|++|++.|++..+.++ +|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~---~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGK---RIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhh---hhc
Confidence 357999999999999999999999999999988765 5778999999999999999999999999775 666
No 72
>KOG0116|consensus
Probab=98.91 E-value=7e-09 Score=92.31 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=64.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
...+|||.|||.++++++|+++|..||.|+...|... +..+||||+|.+.++++.||.+- -..| ++++|.|+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~i---g~~kl~Ve 362 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEI---GGRKLNVE 362 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-cccc---CCeeEEEE
Confidence 4566999999999999999999999999998777542 23389999999999999999654 4444 46799999
Q ss_pred eccCccc
Q psy11527 180 YAKTKMA 186 (206)
Q Consensus 180 ~ak~~~~ 186 (206)
-.+...+
T Consensus 363 ek~~~~~ 369 (419)
T KOG0116|consen 363 EKRPGFR 369 (419)
T ss_pred ecccccc
Confidence 8776443
No 73
>KOG0110|consensus
Probab=98.91 E-value=1.2e-09 Score=100.53 Aligned_cols=78 Identities=21% Similarity=0.373 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
.+++|+|.|||+..+..++++||+.||.|++|+|... .++|||||+|-+..+|.+|+..|..+-++| |+|.++
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyG---RrLVLE 688 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYG---RRLVLE 688 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceec---hhhhee
Confidence 3789999999999999999999999999999999765 357899999999999999999999999977 699999
Q ss_pred eccCc
Q psy11527 180 YAKTK 184 (206)
Q Consensus 180 ~ak~~ 184 (206)
|++..
T Consensus 689 wA~~d 693 (725)
T KOG0110|consen 689 WAKSD 693 (725)
T ss_pred hhccc
Confidence 99865
No 74
>KOG0151|consensus
Probab=98.91 E-value=3.6e-09 Score=97.37 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC-------CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCc
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-------GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRG 174 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~-------~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~ 174 (206)
.+..++|||+||++.+++++|-..|+.||.|.+++|++. ..+.|+||.|-+..+|++|+..|+|..+.. +
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~---~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME---Y 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee---e
Confidence 455788999999999999999999999999999999874 334599999999999999999999999976 5
Q ss_pred eEEEEeccCc
Q psy11527 175 AIRIEYAKTK 184 (206)
Q Consensus 175 ~l~V~~ak~~ 184 (206)
.+++.|+|.-
T Consensus 248 e~K~gWgk~V 257 (877)
T KOG0151|consen 248 EMKLGWGKAV 257 (877)
T ss_pred eeeecccccc
Confidence 9999999643
No 75
>KOG4212|consensus
Probab=98.86 E-value=4.7e-09 Score=92.22 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=66.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
.+..++|||.|||+++|++.|++-|..||.|...+|+. ..+..+.|.|.++++|++|+..|||.++ +||.|+|.|.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime-~GkskGVVrF~s~edAEra~a~Mngs~l---~Gr~I~V~y~ 608 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME-NGKSKGVVRFFSPEDAERACALMNGSRL---DGRNIKVTYF 608 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc-cCCccceEEecCHHHHHHHHHHhccCcc---cCceeeeeeC
Confidence 34568899999999999999999999999999998854 3444559999999999999999999999 5579999873
No 76
>KOG0123|consensus
Probab=98.86 E-value=8.3e-09 Score=91.03 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=67.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC-CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccCc
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~-~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~~ 184 (206)
..|||| ++++|.+|.++|+.+|.|.++++.+| .+-|||||.|.++++|++||..+|...+.++ .|||.|+.++
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~---~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGK---PIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCc---EEEeehhccC
Confidence 469999 99999999999999999999998776 3557999999999999999999999999775 9999999876
Q ss_pred cc
Q psy11527 185 MA 186 (206)
Q Consensus 185 ~~ 186 (206)
..
T Consensus 76 ~~ 77 (369)
T KOG0123|consen 76 PS 77 (369)
T ss_pred Cc
Confidence 43
No 77
>KOG0124|consensus
Probab=98.85 E-value=4.9e-09 Score=90.34 Aligned_cols=77 Identities=23% Similarity=0.398 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
.-.+|||..+.++.+|+||+.+|+.||+|+.|++.++ ++|||+|++|.+..+-..|+..+|-+.+.|+ -|||.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQ---yLRVG 285 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ---YLRVG 285 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccc---eEecc
Confidence 3478999999999999999999999999999999875 6789999999999999999999999999665 99997
Q ss_pred eccC
Q psy11527 180 YAKT 183 (206)
Q Consensus 180 ~ak~ 183 (206)
.+..
T Consensus 286 k~vT 289 (544)
T KOG0124|consen 286 KCVT 289 (544)
T ss_pred cccC
Confidence 7654
No 78
>KOG0106|consensus
Probab=98.79 E-value=7.2e-09 Score=84.41 Aligned_cols=73 Identities=22% Similarity=0.398 Sum_probs=66.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccCcc
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTKM 185 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~~~ 185 (206)
..+|||+|+..+.+.+|+.+|..||.|.++.|.. +|+||+|+|..+|..|+..|||..+.+. .+.|++++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~~e---~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELCGE---RLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceecce---eeeeecccccc
Confidence 4799999999999999999999999999998854 5999999999999999999999999775 59999998643
No 79
>KOG0533|consensus
Probab=98.77 E-value=2.8e-08 Score=82.48 Aligned_cols=76 Identities=24% Similarity=0.343 Sum_probs=67.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
.+|+|.||+..|.++||+++|..||.++.+-+.++ .+.|.|-|.|...++|.+|++.+||..+.+ +.|+++...
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG---~~mk~~~i~ 160 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDG---RPMKIEIIS 160 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCC---ceeeeEEec
Confidence 68999999999999999999999999999998887 455899999999999999999999988854 589998765
Q ss_pred Cc
Q psy11527 183 TK 184 (206)
Q Consensus 183 ~~ 184 (206)
..
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 44
No 80
>KOG4208|consensus
Probab=98.75 E-value=2.8e-08 Score=79.69 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=67.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCC-CCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSF-PGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~-G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
...+||..++..+.+.++..+|.+| |.|.++++.++ +++|||||+|++.+.|.-|-..||++-+++. .|.|.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~---lL~c~ 125 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH---LLECH 125 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh---eeeeE
Confidence 4578999999999999999999998 67777888665 6789999999999999999999999999764 99998
Q ss_pred eccCc
Q psy11527 180 YAKTK 184 (206)
Q Consensus 180 ~ak~~ 184 (206)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87655
No 81
>KOG4205|consensus
Probab=98.73 E-value=1.2e-08 Score=87.61 Aligned_cols=77 Identities=13% Similarity=0.250 Sum_probs=63.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
+.++||||+|+++++++.|++.|++||+|.+|.+++| ++++|+||+|.+.+...++|.. .-+.| +++.|.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~---dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKL---DGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-ccccc---CCccccce
Confidence 5679999999999999999999999999999999986 6778999999999999988843 33444 34566666
Q ss_pred eccCc
Q psy11527 180 YAKTK 184 (206)
Q Consensus 180 ~ak~~ 184 (206)
.+.++
T Consensus 81 ~av~r 85 (311)
T KOG4205|consen 81 RAVSR 85 (311)
T ss_pred eccCc
Confidence 65544
No 82
>KOG4454|consensus
Probab=98.69 E-value=8.1e-09 Score=83.51 Aligned_cols=76 Identities=20% Similarity=0.127 Sum_probs=66.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC--CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK--GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~--~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
..+||||+|+...++|+-|.++|-+-|.|..|.|..+ ....||||.|.++.+..-|++.+||..+.+. .|+|.+-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~---e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEED---EEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccc---hhhcccc
Confidence 3489999999999999999999999999999998654 3334999999999999999999999999764 7777664
Q ss_pred c
Q psy11527 182 K 182 (206)
Q Consensus 182 k 182 (206)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 3
No 83
>KOG4205|consensus
Probab=98.66 E-value=5.1e-08 Score=83.85 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=64.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
...+|||++|+.++++++|++.|.+||.|..+.++.| ..++|+||.|++++++++++ ...-+.|.+ +.+.|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~g---k~vevk 171 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNG---KKVEVK 171 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecC---ceeeEe
Confidence 3569999999999999999999999999998888776 56789999999999999987 455566644 477777
Q ss_pred eccCc
Q psy11527 180 YAKTK 184 (206)
Q Consensus 180 ~ak~~ 184 (206)
.|.++
T Consensus 172 rA~pk 176 (311)
T KOG4205|consen 172 RAIPK 176 (311)
T ss_pred eccch
Confidence 77665
No 84
>KOG1548|consensus
Probab=98.62 E-value=1.4e-07 Score=80.77 Aligned_cols=80 Identities=19% Similarity=0.200 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeE--------EEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCC
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSR--------VRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASS 171 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~--------v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~ 171 (206)
..++.|||.|||.++|.+++.++|++||.|.+ |+|-++ .-+|=|+|.|...++++-|+..|++..+.+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg- 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG- 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC-
Confidence 34677999999999999999999999998865 666554 346789999999999999999999999976
Q ss_pred CCceEEEEeccCcc
Q psy11527 172 DRGAIRIEYAKTKM 185 (206)
Q Consensus 172 ~g~~l~V~~ak~~~ 185 (206)
+.|+|+.|+-.+
T Consensus 211 --~~~rVerAkfq~ 222 (382)
T KOG1548|consen 211 --KKLRVERAKFQM 222 (382)
T ss_pred --cEEEEehhhhhh
Confidence 599999997654
No 85
>KOG4206|consensus
Probab=98.62 E-value=1.7e-07 Score=76.07 Aligned_cols=78 Identities=28% Similarity=0.526 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
.+++..||+.|||.+++.+.|..+|++|...++++++. ..++.|||+|.+...|..|.+.|+|..|.. ...++|.++
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~-~~~~iAfve~~~d~~a~~a~~~lq~~~it~--~~~m~i~~a 219 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIP-PRSGIAFVEFLSDRQASAAQQALQGFKITK--KNTMQITFA 219 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEecc-CCCceeEEecchhhhhHHHhhhhccceecc--CceEEeccc
Confidence 56678999999999999999999999999999999986 567899999999999999999999999974 368898887
Q ss_pred c
Q psy11527 182 K 182 (206)
Q Consensus 182 k 182 (206)
+
T Consensus 220 ~ 220 (221)
T KOG4206|consen 220 K 220 (221)
T ss_pred C
Confidence 6
No 86
>KOG4209|consensus
Probab=98.58 E-value=1.7e-07 Score=77.69 Aligned_cols=78 Identities=23% Similarity=0.391 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
.+.+.+||+|+.+.++.++++..|+.||.|..+.|..+ ..++|+||+|.+.+.++.|++ |||..|.+ +.|.|
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~---~~i~v 174 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG---PAIEV 174 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc---cccee
Confidence 34679999999999999999999999999998888776 357899999999999999997 99999976 49999
Q ss_pred EeccCc
Q psy11527 179 EYAKTK 184 (206)
Q Consensus 179 ~~ak~~ 184 (206)
.+.+-+
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 887655
No 87
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.55 E-value=5e-07 Score=62.82 Aligned_cols=71 Identities=18% Similarity=0.338 Sum_probs=48.4
Q ss_pred CEEEEcCCCCCCcHHH----HHHHhcCCCC-eeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 106 STLFVANLGQFVSEQE----IKDIFGSFPG-FSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~----L~~~F~~~G~-v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
..|||.|||.+.+... |++|+..||+ |.+| ..+.|+|.|.+.+.|.+|.+.|+|..+.|. .|.|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~---kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGN---KISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS-----EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccc---eEEEEE
Confidence 4699999999887754 6788888974 4444 346899999999999999999999999875 999999
Q ss_pred ccCcc
Q psy11527 181 AKTKM 185 (206)
Q Consensus 181 ak~~~ 185 (206)
.....
T Consensus 74 ~~~~r 78 (90)
T PF11608_consen 74 SPKNR 78 (90)
T ss_dssp S--S-
T ss_pred cCCcc
Confidence 86543
No 88
>KOG1456|consensus
Probab=98.53 E-value=5.3e-07 Score=78.15 Aligned_cols=82 Identities=24% Similarity=0.332 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCC--CCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 102 MSPCSTLFVANLGQ--FVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 102 ~~~~~~LfV~nL~~--~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..+++.|.+.=|++ .+|.+-|.++....|+|.+|.|+++ ..-.|.|||++.+.|++|...|||..|+. +.++|||+
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYs-GCCTLKIe 194 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYS-GCCTLKIE 194 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccc-cceeEEEE
Confidence 34567777776664 5899999999999999999999864 55589999999999999999999999998 79999999
Q ss_pred eccCcc
Q psy11527 180 YAKTKM 185 (206)
Q Consensus 180 ~ak~~~ 185 (206)
|+|+.+
T Consensus 195 yAkP~r 200 (494)
T KOG1456|consen 195 YAKPTR 200 (494)
T ss_pred ecCcce
Confidence 999753
No 89
>KOG0226|consensus
Probab=98.50 E-value=9.7e-08 Score=78.81 Aligned_cols=78 Identities=23% Similarity=0.468 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
...+||.|.|.-+++++.|-+.|.+|-.....+++++ +++||+||.|.|..++.+|++.+||..+.. |.|++.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs---rpiklR 265 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS---RPIKLR 265 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc---chhHhh
Confidence 3579999999999999999999999998888888776 678999999999999999999999999944 698877
Q ss_pred eccCc
Q psy11527 180 YAKTK 184 (206)
Q Consensus 180 ~ak~~ 184 (206)
-+..+
T Consensus 266 kS~wk 270 (290)
T KOG0226|consen 266 KSEWK 270 (290)
T ss_pred hhhHH
Confidence 65544
No 90
>KOG1190|consensus
Probab=98.35 E-value=1e-06 Score=77.05 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=69.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccCc
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~~ 184 (206)
-+++|+|+-..++-+-|.++|++||.|.+|.-+.+...=-|+|.|.|.+.|+.|...|+|..|+. +.+.|||+|++--
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyn-gcCtLrId~Sklt 228 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYN-GCCTLRIDFSKLT 228 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccC-ceeEEEeehhhcc
Confidence 45678999999999999999999999999877765444478999999999999999999999998 6999999999864
No 91
>KOG0120|consensus
Probab=98.24 E-value=1.8e-06 Score=78.17 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
....++||++|+..+++++++++...||.++...++.+ .++||||.+|-+..-...|+..|||..+.++ .|.|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~---~lvv 363 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK---KLVV 363 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc---eeEe
Confidence 34578999999999999999999999999999888776 5789999999999999999999999999776 9999
Q ss_pred EeccCcc
Q psy11527 179 EYAKTKM 185 (206)
Q Consensus 179 ~~ak~~~ 185 (206)
+.+....
T Consensus 364 q~A~~g~ 370 (500)
T KOG0120|consen 364 QRAIVGA 370 (500)
T ss_pred ehhhccc
Confidence 9987653
No 92
>KOG1456|consensus
Probab=98.16 E-value=3e-05 Score=67.47 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=70.5
Q ss_pred CCCCCCEEEEcCCCCC-CcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 101 GMSPCSTLFVANLGQF-VSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 101 ~~~~~~~LfV~nL~~~-~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
...+++.+-|.+|... ++-+.|..+|..||.|.+|++++ .+.|-|.|++.|..+.++|+..||+..+.+. +|.|-
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk-Tk~gtamVemgd~~aver~v~hLnn~~lfG~---kl~v~ 358 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK-TKPGTAMVEMGDAYAVERAVTHLNNIPLFGG---KLNVC 358 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee-cccceeEEEcCcHHHHHHHHHHhccCccccc---eEEEe
Confidence 3556789999999976 66788999999999999999986 5678999999999999999999999999775 99998
Q ss_pred eccCc
Q psy11527 180 YAKTK 184 (206)
Q Consensus 180 ~ak~~ 184 (206)
++|..
T Consensus 359 ~SkQ~ 363 (494)
T KOG1456|consen 359 VSKQN 363 (494)
T ss_pred ecccc
Confidence 88765
No 93
>KOG0147|consensus
Probab=98.03 E-value=1.9e-06 Score=77.74 Aligned_cols=79 Identities=16% Similarity=0.310 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
....+|+|+.-|...+++.||.++|+.+|.|..|+++.| .++|.+||+|.|.++...|| .|.|..+.+. +|.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~---pv~ 251 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGV---PVI 251 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCc---eeE
Confidence 345689999999999999999999999999999999987 57799999999999999999 8999999876 999
Q ss_pred EEeccCc
Q psy11527 178 IEYAKTK 184 (206)
Q Consensus 178 V~~ak~~ 184 (206)
|......
T Consensus 252 vq~sEae 258 (549)
T KOG0147|consen 252 VQLSEAE 258 (549)
T ss_pred ecccHHH
Confidence 9876543
No 94
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.00 E-value=4.5e-05 Score=54.87 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=62.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcC--CCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCC-CCceEEE
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGS--FPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASS-DRGAIRI 178 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~--~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~-~g~~l~V 178 (206)
+||-|.|+|...+.++|.+++.. .|...-+.+..| .+.|||||.|.+.+.|.+=.+.++|..+... ......|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988864 355555555555 4568999999999999999999999999632 1346778
Q ss_pred EeccCc
Q psy11527 179 EYAKTK 184 (206)
Q Consensus 179 ~~ak~~ 184 (206)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887654
No 95
>KOG1855|consensus
Probab=97.96 E-value=7.2e-06 Score=72.23 Aligned_cols=65 Identities=26% Similarity=0.344 Sum_probs=55.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC-----------------CCCCEEEEEeCCHHHHHHHHHHhCCC
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-----------------GGSPVAFIEYTDVNFAIQAMSNLNGS 166 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~-----------------~~~g~aFV~f~~~~~A~~Al~~Lng~ 166 (206)
++++|.+-|||.+-.-+-|.+||+.||.|+.|+|... ..+-||||+|++.+.|.+|...|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6899999999999888999999999999999999753 01349999999999999999888554
Q ss_pred ee
Q psy11527 167 YL 168 (206)
Q Consensus 167 ~i 168 (206)
.-
T Consensus 310 ~~ 311 (484)
T KOG1855|consen 310 QN 311 (484)
T ss_pred hh
Confidence 43
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.95 E-value=3.3e-05 Score=56.46 Aligned_cols=59 Identities=22% Similarity=0.411 Sum_probs=39.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCC
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGS 166 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~ 166 (206)
+.|.|.++...++.++|+++|+.||.|.-|.+.. +..-|||.|.+.+.|+.|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999888754 4458999999999999999877544
No 97
>KOG2416|consensus
Probab=97.90 E-value=1.9e-05 Score=72.10 Aligned_cols=81 Identities=15% Similarity=0.261 Sum_probs=70.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhc-CCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFG-SFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~-~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
...+..|||.||-.-+|.-+|+.|++ .+|.|.+.+| |+-|..|||.|.+.++|.....+|||.++-..+.+.|.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 45668999999999999999999998 6777777755 55666899999999999999999999999887888999999
Q ss_pred ccCc
Q psy11527 181 AKTK 184 (206)
Q Consensus 181 ak~~ 184 (206)
....
T Consensus 519 ~~~d 522 (718)
T KOG2416|consen 519 VRAD 522 (718)
T ss_pred cchh
Confidence 8653
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.88 E-value=3.7e-05 Score=66.16 Aligned_cols=75 Identities=20% Similarity=0.476 Sum_probs=60.9
Q ss_pred CEEEEcCCCCCCcHHH----H--HHHhcCCCCeeEEEEecCCC-----CC--EEEEEeCCHHHHHHHHHHhCCCeecCCC
Q psy11527 106 STLFVANLGQFVSEQE----I--KDIFGSFPGFSRVRMHNKGG-----SP--VAFIEYTDVNFAIQAMSNLNGSYLASSD 172 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~----L--~~~F~~~G~v~~v~l~~~~~-----~g--~aFV~f~~~~~A~~Al~~Lng~~i~~~~ 172 (206)
.-+||-+|++.+-.++ | .++|++||.|+.|.+.++.. .+ -.||+|...++|.+||...+|..+ |
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~---D 191 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL---D 191 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc---c
Confidence 4579999999977766 2 58999999999998865421 12 239999999999999999999999 5
Q ss_pred CceEEEEeccC
Q psy11527 173 RGAIRIEYAKT 183 (206)
Q Consensus 173 g~~l~V~~ak~ 183 (206)
||.|+..|...
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 57999998753
No 99
>KOG1995|consensus
Probab=97.78 E-value=2.9e-05 Score=67.03 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=68.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeE--------EEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSR--------VRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLA 169 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~--------v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~ 169 (206)
...+.+|||-+|+..+++++|..+|.+||.|+. |+|-++ ..|+-|.|.|.|...|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 455689999999999999999999999998864 223222 46689999999999999999999999997
Q ss_pred CCCCceEEEEeccCcc
Q psy11527 170 SSDRGAIRIEYAKTKM 185 (206)
Q Consensus 170 ~~~g~~l~V~~ak~~~ 185 (206)
+. .|+|.+++.+.
T Consensus 143 gn---~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GN---TIKVSLAERRT 155 (351)
T ss_pred CC---Cchhhhhhhcc
Confidence 75 99999987654
No 100
>KOG0106|consensus
Probab=97.76 E-value=2.7e-05 Score=63.67 Aligned_cols=71 Identities=30% Similarity=0.348 Sum_probs=61.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
..+.|+|.++...+.+.+|++.|+++|.+....+ ..+++||+|...++|.+|+..|+|..+.+ +.|.+...
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~---~~l~~~~~ 168 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNG---RRISVEKN 168 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcC---ceeeeccc
Confidence 3578899999999999999999999999955444 44599999999999999999999999966 48888554
No 101
>KOG4211|consensus
Probab=97.69 E-value=0.00033 Score=62.90 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=58.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC--CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK--GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~--~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
.+...-|-+.+||+++|++||.++|+.|+ |.++.+.+. +..|-|||+|.+.+++++|+ +.|...+.. |-|.|-
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~---RYIEVf 81 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGH---RYIEVF 81 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHH-HhhHHHhCC---ceEEEE
Confidence 34445677789999999999999999875 566777665 45589999999999999999 566666633 577775
Q ss_pred ecc
Q psy11527 180 YAK 182 (206)
Q Consensus 180 ~ak 182 (206)
-+.
T Consensus 82 ~~~ 84 (510)
T KOG4211|consen 82 TAG 84 (510)
T ss_pred ccC
Confidence 553
No 102
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.64 E-value=0.00016 Score=46.22 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=42.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHH
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAM 160 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al 160 (206)
+.|-|.+.+.+..+ ++.+.|..||+|.++.+. ....+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 56778888877554 455588899999999884 34569999999999999985
No 103
>KOG0112|consensus
Probab=97.46 E-value=0.00017 Score=68.74 Aligned_cols=79 Identities=22% Similarity=0.404 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
...+.+||++|...+....|.+.|..||.|..|.+ +....|++|.|++...++.|++.+-|..+.+ ..++|+|.|+.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy--~hgq~yayi~yes~~~aq~a~~~~rgap~G~-P~~r~rvdla~ 529 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY--RHGQPYAYIQYESPPAAQAATHDMRGAPLGG-PPRRLRVDLAS 529 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeec--ccCCcceeeecccCccchhhHHHHhcCcCCC-CCccccccccc
Confidence 35688999999999999999999999999999877 5567799999999999999999999999987 47789999997
Q ss_pred Cc
Q psy11527 183 TK 184 (206)
Q Consensus 183 ~~ 184 (206)
..
T Consensus 530 ~~ 531 (975)
T KOG0112|consen 530 PP 531 (975)
T ss_pred CC
Confidence 54
No 104
>KOG4210|consensus
Probab=97.44 E-value=0.00013 Score=62.41 Aligned_cols=77 Identities=18% Similarity=0.331 Sum_probs=65.3
Q ss_pred CCEEE-EcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 105 CSTLF-VANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 105 ~~~Lf-V~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..++| |++|++.+++++|+..|..+|.|..+++..+ ..+||+||+|.+......++.. +...+. ++.++++
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~ 259 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIG---GRPLRLE 259 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCccc---Ccccccc
Confidence 34555 9999999999999999999999999998764 4557999999999999999876 777774 4799999
Q ss_pred eccCcc
Q psy11527 180 YAKTKM 185 (206)
Q Consensus 180 ~ak~~~ 185 (206)
+.+...
T Consensus 260 ~~~~~~ 265 (285)
T KOG4210|consen 260 EDEPRP 265 (285)
T ss_pred cCCCCc
Confidence 988764
No 105
>KOG2314|consensus
Probab=97.37 E-value=0.00031 Score=64.10 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=60.7
Q ss_pred CCEEEEcCCCCCCc--H----HHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCce
Q psy11527 105 CSTLFVANLGQFVS--E----QEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGA 175 (206)
Q Consensus 105 ~~~LfV~nL~~~~t--e----~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~ 175 (206)
...|+|.|+|---. - .-|.++|+++|+|....+..+ +.+||.|++|.+..+|+.|++.|||+.++.+ ++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn--Ht 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN--HT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc--ce
Confidence 35889999986322 2 246789999999999888654 6778999999999999999999999999864 77
Q ss_pred EEEEec
Q psy11527 176 IRIEYA 181 (206)
Q Consensus 176 l~V~~a 181 (206)
+.|..-
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 777643
No 106
>KOG1548|consensus
Probab=97.37 E-value=0.00076 Score=58.27 Aligned_cols=77 Identities=12% Similarity=0.183 Sum_probs=60.8
Q ss_pred CCCEEEEcCCC----CCCc-------HHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCC
Q psy11527 104 PCSTLFVANLG----QFVS-------EQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSD 172 (206)
Q Consensus 104 ~~~~LfV~nL~----~~~t-------e~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~ 172 (206)
..++|.+.|+= ...+ +++|++-..+||.|.+|.|.-....|.+-|.|.+.++|..||+.|+|..+ +
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f---d 340 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWF---D 340 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeee---c
Confidence 35788888861 1223 35667778999999999887656778999999999999999999999999 4
Q ss_pred CceEEEEeccC
Q psy11527 173 RGAIRIEYAKT 183 (206)
Q Consensus 173 g~~l~V~~ak~ 183 (206)
||.|..+....
T Consensus 341 gRql~A~i~DG 351 (382)
T KOG1548|consen 341 GRQLTASIWDG 351 (382)
T ss_pred ceEEEEEEeCC
Confidence 57887766543
No 107
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.26 E-value=0.0018 Score=49.80 Aligned_cols=77 Identities=17% Similarity=0.288 Sum_probs=52.6
Q ss_pred CCCCCEEEEcCCC------CCCcH---HHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCC
Q psy11527 102 MSPCSTLFVANLG------QFVSE---QEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSD 172 (206)
Q Consensus 102 ~~~~~~LfV~nL~------~~~te---~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~ 172 (206)
+|+..|+.|.=+. ..+.+ .+|-+.|..||.|.-+|++.+ .-.|+|.+.++|.+|+ .++|.++.+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaal-s~dg~~v~g-- 96 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAAL-SLDGIQVNG-- 96 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHH-HGCCSEETT--
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHH-ccCCcEECC--
Confidence 4455687776555 12333 367788999999998888753 6799999999999999 799999955
Q ss_pred CceEEEEeccCccc
Q psy11527 173 RGAIRIEYAKTKMA 186 (206)
Q Consensus 173 g~~l~V~~ak~~~~ 186 (206)
+.|+|+...+.+-
T Consensus 97 -~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 97 -RTLKIRLKTPDWL 109 (146)
T ss_dssp -EEEEEEE------
T ss_pred -EEEEEEeCCccHH
Confidence 6999999887654
No 108
>KOG4676|consensus
Probab=97.23 E-value=0.00051 Score=60.24 Aligned_cols=63 Identities=16% Similarity=0.306 Sum_probs=52.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC-------CCCCEEEEEeCCHHHHHHHHHHhCCCee
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-------GGSPVAFIEYTDVNFAIQAMSNLNGSYL 168 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~-------~~~g~aFV~f~~~~~A~~Al~~Lng~~i 168 (206)
..|-|.||.+.++.++++.||+..|+|.+++|..+ .....|||.|.|...+..|.+.-|-..|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfv 77 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFV 77 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceee
Confidence 48999999999999999999999999999998763 2234899999999999999754444444
No 109
>KOG3152|consensus
Probab=97.22 E-value=0.00023 Score=59.15 Aligned_cols=67 Identities=12% Similarity=0.335 Sum_probs=57.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC---------CCC-------EEEEEeCCHHHHHHHHHHhCCCee
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG---------GSP-------VAFIEYTDVNFAIQAMSNLNGSYL 168 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~---------~~g-------~aFV~f~~~~~A~~Al~~Lng~~i 168 (206)
.-.||++++|+.....-|+++|+.||.|-+|.+-... .++ -|.|+|.+...|.++...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3589999999999999999999999999999986531 111 467999999999999999999999
Q ss_pred cCC
Q psy11527 169 ASS 171 (206)
Q Consensus 169 ~~~ 171 (206)
.|+
T Consensus 154 ggk 156 (278)
T KOG3152|consen 154 GGK 156 (278)
T ss_pred CCC
Confidence 875
No 110
>KOG0120|consensus
Probab=97.19 E-value=0.0013 Score=60.06 Aligned_cols=61 Identities=20% Similarity=0.382 Sum_probs=50.0
Q ss_pred HHHHHHhcCCCCeeEEEEecC-------CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 120 QEIKDIFGSFPGFSRVRMHNK-------GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 120 ~~L~~~F~~~G~v~~v~l~~~-------~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
++++.-+++||.|.+|.+.++ -+-|.-||+|.+.+++++|+..|+|.++. +|.+...|-..
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~---nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA---NRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC---CcEEEEEecCH
Confidence 356677889999999998765 23468899999999999999999999994 46888887543
No 111
>KOG4211|consensus
Probab=97.18 E-value=0.0012 Score=59.36 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=53.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeE-EEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSR-VRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~-v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
...|-+.+||+.|+++||.++|+-.--|.. +.++.+ +..|-|||.|++.+.|++|+.. |...|. .|-|.|-.
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iG---hRYIEvF~ 178 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIG---HRYIEVFR 178 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhc---cceEEeeh
Confidence 357888999999999999999987654444 334433 4457999999999999999954 444452 34665544
Q ss_pred c
Q psy11527 181 A 181 (206)
Q Consensus 181 a 181 (206)
+
T Consensus 179 S 179 (510)
T KOG4211|consen 179 S 179 (510)
T ss_pred h
Confidence 4
No 112
>KOG0129|consensus
Probab=97.06 E-value=0.0015 Score=59.02 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=53.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhc-CCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHH
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFG-SFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSN 162 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~-~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~ 162 (206)
.++.+|||||+||.-++.++|-.+|+ .||.|.-+-|..| --+|=|-|+|++..+-.+||.+
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 45779999999999999999999998 8999998888665 3457889999999999999854
No 113
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.06 E-value=0.0044 Score=44.84 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=51.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEe-c----------CCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCC
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMH-N----------KGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDR 173 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~-~----------~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g 173 (206)
.+-|.|-+.|+. ....+-+.|++||.|.+..-. + ......--|.|+++.+|.+|| .-||..+.+.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~-- 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGS-- 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTC--
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCc--
Confidence 356888888888 556677899999999887510 0 134458899999999999999 7899999663
Q ss_pred ceEEEEecc
Q psy11527 174 GAIRIEYAK 182 (206)
Q Consensus 174 ~~l~V~~ak 182 (206)
.-+-|.+.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 445566664
No 114
>KOG4849|consensus
Probab=97.00 E-value=0.00048 Score=59.66 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=61.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCC--CeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFP--GFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G--~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
.-.+|||||-+.+|++||.+.+...| .|.+++++.+ .+||||+|...+..+.++-+..|-...|.++ .+..+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ--~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ--SPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC--CCeee
Confidence 35689999999999999998887776 5566666554 6789999999999999999999988888876 55556
Q ss_pred EeccC
Q psy11527 179 EYAKT 183 (206)
Q Consensus 179 ~~ak~ 183 (206)
.+.|.
T Consensus 158 ~~NK~ 162 (498)
T KOG4849|consen 158 SYNKT 162 (498)
T ss_pred ccchh
Confidence 66553
No 115
>KOG4307|consensus
Probab=96.98 E-value=0.0025 Score=59.61 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=59.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCee-EEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFS-RVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~-~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
+.++.|-+.|+|++++-+||.++|.-|-.+- +|++.++ .-.|-|.|.|++.++|.+|...|++.+|.. |.+++
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~n---r~V~l 941 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRN---RVVSL 941 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccc---eeEEE
Confidence 3456888999999999999999999997554 3444332 223689999999999999999999999966 47776
Q ss_pred Ee
Q psy11527 179 EY 180 (206)
Q Consensus 179 ~~ 180 (206)
.+
T Consensus 942 ~i 943 (944)
T KOG4307|consen 942 RI 943 (944)
T ss_pred Ee
Confidence 53
No 116
>KOG0129|consensus
Probab=96.94 E-value=0.0029 Score=57.31 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=46.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC-------CCCC---EEEEEeCCHHHHHHHHHHh
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-------GGSP---VAFIEYTDVNFAIQAMSNL 163 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~-------~~~g---~aFV~f~~~~~A~~Al~~L 163 (206)
.-.++||||+||.+++|++|...|..||.+.- ....+ -.+| |.|+.|+++.++..-+.+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 34689999999999999999999999998652 22211 1234 9999999999988766554
No 117
>KOG2193|consensus
Probab=96.91 E-value=0.00075 Score=59.80 Aligned_cols=73 Identities=25% Similarity=0.429 Sum_probs=56.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCC--CCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSF--PGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~--G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
.+||++||.+.++..||+.+|+.. |.-.. .|+ ..||+||++.|...|.+|++.|+|..-.. |.++.|+++-.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~-fl~---k~gyafvd~pdq~wa~kaie~~sgk~elq--Gkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQ-FLV---KSGYAFVDCPDQQWANKAIETLSGKVELQ--GKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcc-eee---ecceeeccCCchhhhhhhHHhhchhhhhc--Cceeeccchhh
Confidence 479999999999999999999753 11111 122 45799999999999999999999975432 45888888765
Q ss_pred c
Q psy11527 184 K 184 (206)
Q Consensus 184 ~ 184 (206)
+
T Consensus 76 k 76 (584)
T KOG2193|consen 76 K 76 (584)
T ss_pred H
Confidence 4
No 118
>KOG2253|consensus
Probab=96.87 E-value=0.0015 Score=60.60 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=58.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCC
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASS 171 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~ 171 (206)
.++..++||+|+...+..+-++.++..||-|.+++.+. |||++|....-..+|++.|+-..+.++
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 34457999999999999999999999999999998765 999999999999999999988888664
No 119
>KOG1996|consensus
Probab=96.69 E-value=0.0052 Score=52.22 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=48.0
Q ss_pred HHHHHHhcCCCCeeEEEEecCCC-----CCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 120 QEIKDIFGSFPGFSRVRMHNKGG-----SPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 120 ~~L~~~F~~~G~v~~v~l~~~~~-----~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
+++++-.++||.|..|.|+..-+ ..--||+|...++|.+|+..|||..+. ||.++.-|-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG---Gr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG---GRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec---ceeeeheec
Confidence 56788899999999998876422 236799999999999999999999994 468776654
No 120
>KOG0112|consensus
Probab=96.66 E-value=0.00037 Score=66.49 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=65.4
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceE
Q psy11527 100 NGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAI 176 (206)
Q Consensus 100 ~~~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l 176 (206)
++...++|||+|||...+++.+|+..|..+|.|.+|+|... ....|+||.|.+...+-+|+..+.+..|... .+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g---~~ 443 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG---TH 443 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccC---cc
Confidence 34556799999999999999999999999999999998653 2335999999999999999999999888652 44
Q ss_pred EEEec
Q psy11527 177 RIEYA 181 (206)
Q Consensus 177 ~V~~a 181 (206)
++.+.
T Consensus 444 r~glG 448 (975)
T KOG0112|consen 444 RIGLG 448 (975)
T ss_pred ccccc
Confidence 44444
No 121
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.59 E-value=0.01 Score=39.06 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=43.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCC---CCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHh
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSF---PGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNL 163 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~---G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~L 163 (206)
.+|+|.++. +++.+|++.+|..| ....+|.++.|. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 489999985 47888999999988 234567777654 4789999999999999765
No 122
>KOG2202|consensus
Probab=96.26 E-value=0.002 Score=53.56 Aligned_cols=59 Identities=10% Similarity=0.206 Sum_probs=47.2
Q ss_pred HHHHHhc-CCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 121 EIKDIFG-SFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 121 ~L~~~F~-~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
||...|+ +||+|+++.+-.+ .-.|-.+|.|...++|++|+..||+..+.+ ++|..++.-
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G---~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNG---RPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccC---CcceeeecC
Confidence 4444455 8999999876543 345688999999999999999999999955 599988864
No 123
>KOG4574|consensus
Probab=96.20 E-value=0.017 Score=55.35 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=64.7
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccCc
Q psy11527 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184 (206)
Q Consensus 107 ~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~~ 184 (206)
+.++-|..-..+-..|..+|..||.|.+.+.+++.. .+.|+|...+.|..|+.+|+|..+.. .|.+.+|.+++.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~-~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSV-TGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCcccc-cCCceeEEecccc
Confidence 455666666778889999999999999999987543 89999999999999999999999987 5889999999864
No 124
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.17 E-value=0.034 Score=38.77 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=41.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCC
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNG 165 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng 165 (206)
...+|+ .|.+....||.++|+.||.|.--.| .+. -|||...+.+.|..++..+.-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-NDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cCC---cEEEEeecHHHHHHHHHHhcc
Confidence 456666 9999999999999999999874444 233 799999999999999988863
No 125
>KOG0105|consensus
Probab=96.11 E-value=0.058 Score=43.22 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=60.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
...+.|.+||...+++||++....-|.|+-..+.+| +++.|+|-..++.+-|++.|+.+++.. .|....+.
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---g~GvV~~~r~eDMkYAvr~ld~~~~~s-eGe~~yir 185 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---GVGVVEYLRKEDMKYAVRKLDDQKFRS-EGETAYIR 185 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---cceeeeeeehhhHHHHHHhhccccccC-cCcEeeEE
Confidence 357889999999999999999999999998888765 489999999999999999999988866 34444433
No 126
>KOG2068|consensus
Probab=96.07 E-value=0.0024 Score=55.05 Aligned_cols=76 Identities=16% Similarity=0.342 Sum_probs=58.4
Q ss_pred CEEEEcCCCCCCcHH-HH--HHHhcCCCCeeEEEEecCC-------CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCce
Q psy11527 106 STLFVANLGQFVSEQ-EI--KDIFGSFPGFSRVRMHNKG-------GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGA 175 (206)
Q Consensus 106 ~~LfV~nL~~~~te~-~L--~~~F~~~G~v~~v~l~~~~-------~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~ 175 (206)
.-+||-+|+..+-++ .| .+.|++||+|..|.+..+. ...-++|+|...++|.+||+..+|..+.+ +.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg---~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDG---RA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhh---hh
Confidence 456888888775444 44 3689999999999887643 11357999999999999999999999955 57
Q ss_pred EEEEeccCc
Q psy11527 176 IRIEYAKTK 184 (206)
Q Consensus 176 l~V~~ak~~ 184 (206)
|+..+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 777776544
No 127
>KOG1365|consensus
Probab=95.95 E-value=0.019 Score=50.58 Aligned_cols=74 Identities=20% Similarity=0.182 Sum_probs=58.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCC-e--eEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPG-F--SRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~-v--~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...|-+.+||.+.+.+||-.+|+.|-. | ..|.|+.+ +-.|-|||+|.+.+.|..|.+..+.+.... |-|.|
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~---RYiEv 356 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKS---RYIEV 356 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhccc---ceEEE
Confidence 457888999999999999999998863 2 23677665 334799999999999999999888876633 57766
Q ss_pred Eec
Q psy11527 179 EYA 181 (206)
Q Consensus 179 ~~a 181 (206)
--+
T Consensus 357 fp~ 359 (508)
T KOG1365|consen 357 FPC 359 (508)
T ss_pred eec
Confidence 544
No 128
>KOG0115|consensus
Probab=95.94 E-value=0.0077 Score=50.25 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=56.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeec-CCCCceEEEEec
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLA-SSDRGAIRIEYA 181 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~-~~~g~~l~V~~a 181 (206)
..|||.||...++.+.|.+-|+.||.|.+..+.-| ...+-++|+|.+.-.|.+|+..+.-.-+. ...+++.-|+-.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 68999999999999999999999999987544333 34457899999999999999887322222 113455555433
No 129
>KOG0128|consensus
Probab=95.87 E-value=0.0048 Score=58.86 Aligned_cols=76 Identities=8% Similarity=0.054 Sum_probs=63.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
...+||.|+++..|.++|+.+|..+|.+.+++++.. .-+|.+||.|.+..++.+++...++..+... .+.|+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~---~~~v~vs 812 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKREN---NGEVQVS 812 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhc---Ccccccc
Confidence 467899999999999999999999999999887653 4568999999999999999988887777553 6666664
Q ss_pred cC
Q psy11527 182 KT 183 (206)
Q Consensus 182 k~ 183 (206)
..
T Consensus 813 np 814 (881)
T KOG0128|consen 813 NP 814 (881)
T ss_pred CC
Confidence 33
No 130
>KOG1365|consensus
Probab=95.39 E-value=0.062 Score=47.43 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=42.7
Q ss_pred EEEEcCCCCCCcHHHHHHHhcC----CCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHH
Q psy11527 107 TLFVANLGQFVSEQEIKDIFGS----FPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSN 162 (206)
Q Consensus 107 ~LfV~nL~~~~te~~L~~~F~~----~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~ 162 (206)
.|-..+||+++++.|+.++|.. -|..+.|-++.. +-.|-|||.|..+++|+.||++
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 4566899999999999999962 134455544432 3347999999999999999964
No 131
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.36 E-value=0.052 Score=43.58 Aligned_cols=61 Identities=11% Similarity=0.207 Sum_probs=45.1
Q ss_pred cHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhC--CCeecCCCCceEEEEeccC
Q psy11527 118 SEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLN--GSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 118 te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Ln--g~~i~~~~g~~l~V~~ak~ 183 (206)
..+.|+++|..|+.+..+..++ +-+-..|.|.+.+.|.+|...|+ +..+.++ .|+|-|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~---~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGK---RLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTE---E-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCC---ceEEEEccc
Confidence 4578999999999999888875 33467999999999999999999 9999765 899999854
No 132
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.33 E-value=0.12 Score=39.80 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=56.5
Q ss_pred CCCCCEEEEcCCCCCCcH-HH---HHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSE-QE---IKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te-~~---L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
.++-.||.|.=|..++.. +| +.+.++.||.|.+|.+. ++.-|.|.|.|..+|=.|+.+++.. .. |..++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s~-~p---gtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQSR-AP---GTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcCC-CC---CceEE
Confidence 345578888877666433 34 44567899999999875 4457999999999999999999873 32 34888
Q ss_pred EEeccCcc
Q psy11527 178 IEYAKTKM 185 (206)
Q Consensus 178 V~~ak~~~ 185 (206)
+.|-.+-+
T Consensus 156 CsWqqrFM 163 (166)
T PF15023_consen 156 CSWQQRFM 163 (166)
T ss_pred eecccccc
Confidence 88765443
No 133
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.28 E-value=0.42 Score=35.12 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=52.5
Q ss_pred CEEEE-cCCCCCCcHHHHHHHhcCC-CCeeEEEEecCC--CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 106 STLFV-ANLGQFVSEQEIKDIFGSF-PGFSRVRMHNKG--GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 106 ~~LfV-~nL~~~~te~~L~~~F~~~-G~v~~v~l~~~~--~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
.+|.| ...+.-++-++|..+.+.+ ..|..++|+++. ++-.+.++|.+.++|..=...+||..+..-+....+|-|-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV 92 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFV 92 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEE
Confidence 34444 4455556666776666655 466778888873 3348899999999999999999999986543344444443
No 134
>KOG4307|consensus
Probab=95.16 E-value=0.039 Score=51.96 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=60.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeE-EEEec---CCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSR-VRMHN---KGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~-v~l~~---~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
.-+..|||-.||..+++.++.++|...-.|++ |.|.+ +..++.|||+|..++++..|...-+.+.+. -|.|+|
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G---~r~irv 508 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPG---HRIIRV 508 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccC---ceEEEe
Confidence 34579999999999999999999988777776 55543 356679999999999999998666655553 478999
Q ss_pred Eec
Q psy11527 179 EYA 181 (206)
Q Consensus 179 ~~a 181 (206)
.-.
T Consensus 509 ~si 511 (944)
T KOG4307|consen 509 DSI 511 (944)
T ss_pred ech
Confidence 743
No 135
>KOG4285|consensus
Probab=94.63 E-value=0.23 Score=42.57 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=44.7
Q ss_pred EcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecC
Q psy11527 110 VANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLAS 170 (206)
Q Consensus 110 V~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~ 170 (206)
|-+.++. ....|-.+|++||.|.+...- .+..+-.|.|.++.+|++|| .-||..|.+
T Consensus 202 VfGFppg-~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KAL-skng~ii~g 258 (350)
T KOG4285|consen 202 VFGFPPG-QVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKAL-SKNGTIIDG 258 (350)
T ss_pred EeccCcc-chhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhh-hhcCeeecc
Confidence 3455554 446778899999999887664 34459999999999999999 678888866
No 136
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.59 E-value=0.096 Score=41.69 Aligned_cols=81 Identities=12% Similarity=0.171 Sum_probs=51.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcC-CCCeeEEEEec---C------CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCC
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGS-FPGFSRVRMHN---K------GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDR 173 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~-~G~v~~v~l~~---~------~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g 173 (206)
...+|-|.+||+.+|++++.+.++. ++.-.....+. . ..-.-|||.|.+.+++..=...++|+.+.+..|
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3569999999999999999887776 66652222221 1 111389999999999999999999988765422
Q ss_pred --ceEEEEeccCc
Q psy11527 174 --GAIRIEYAKTK 184 (206)
Q Consensus 174 --~~l~V~~ak~~ 184 (206)
..-.|++|--+
T Consensus 86 ~~~~~~VE~Apyq 98 (176)
T PF03467_consen 86 NEYPAVVEFAPYQ 98 (176)
T ss_dssp -EEEEEEEE-SS-
T ss_pred CCcceeEEEcchh
Confidence 34477887653
No 137
>KOG0128|consensus
Probab=94.03 E-value=0.0048 Score=58.88 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=51.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEe----cCCCCCEEEEEeCCHHHHHHHHHHhCCC
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMH----NKGGSPVAFIEYTDVNFAIQAMSNLNGS 166 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~----~~~~~g~aFV~f~~~~~A~~Al~~Lng~ 166 (206)
...++||+||+..+.+++|...|..+|.+..+.+. .++-+|+|||+|.+.+.+.+|+...++.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh
Confidence 34678999999999999999999999988776554 2356789999999999999999554443
No 138
>KOG2591|consensus
Probab=93.98 E-value=0.21 Score=46.15 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=51.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhc--CCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHH-------hCCCeecC
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFG--SFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSN-------LNGSYLAS 170 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~--~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~-------Lng~~i~~ 170 (206)
.|.+.+..|++.+.+|+++.||. .|.++++|.+..+. --||+|++..+|+.|.+. ++|+.|+.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 35677899999999999999996 58999999886543 479999999999999764 56666644
No 139
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.80 E-value=0.43 Score=32.24 Aligned_cols=67 Identities=21% Similarity=0.412 Sum_probs=38.8
Q ss_pred EEEEc-CCCCCCcHHHHHHHhcCCCC-----eeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 107 TLFVA-NLGQFVSEQEIKDIFGSFPG-----FSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 107 ~LfV~-nL~~~~te~~L~~~F~~~G~-----v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
+|||. +=-..++..+|..++..-+. |-++++..+ |+||+-.. +.|+.++..|++..+.+ +.++|+.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~-~~a~~v~~~l~~~~~~g---k~v~ve~ 73 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPE-EVAEKVLEALNGKKIKG---KKVRVER 73 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-T-T-HHHHHHHHTT--SSS-------EEE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECH-HHHHHHHHHhcCCCCCC---eeEEEEE
Confidence 45662 22345888899888877654 445666543 99999875 57889999999999966 5999886
Q ss_pred c
Q psy11527 181 A 181 (206)
Q Consensus 181 a 181 (206)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 4
No 140
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.99 E-value=0.88 Score=30.31 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=39.5
Q ss_pred CCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCC
Q psy11527 116 FVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASS 171 (206)
Q Consensus 116 ~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~ 171 (206)
.++-++++..+..|+-. +|.. + ..| =||.|.|..+|+++....+|..+...
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I~~--d-~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y 61 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RIRD--D-RTG-FYIVFNDSKEAERCFRAEDGTLFFTY 61 (66)
T ss_pred CccHHHHHHHHhcCCcc-eEEe--c-CCE-EEEEECChHHHHHHHHhcCCCEEEEE
Confidence 46788999999999852 2332 2 223 48999999999999999999988653
No 141
>KOG2135|consensus
Probab=91.58 E-value=0.12 Score=46.62 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=57.9
Q ss_pred CCEEEEcCCCCCC-cHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 105 CSTLFVANLGQFV-SEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 105 ~~~LfV~nL~~~~-te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
.+.|-+--.++.. +..+|..-|.+||.|..|.+-.. .--|.|+|.+..+|-+|. ..++..|. +|.|||-|-+.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~-~s~~avln---nr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAY-ASHGAVLN---NRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchh-ccccceec---CceeEEEEecC
Confidence 3455555556654 45789999999999999988543 447899999999998886 78999994 57999999876
Q ss_pred c
Q psy11527 184 K 184 (206)
Q Consensus 184 ~ 184 (206)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 142
>KOG2318|consensus
Probab=91.56 E-value=0.86 Score=42.36 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=63.4
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhcCC----CCeeEEEEecC-------------CC---------------------
Q psy11527 102 MSPCSTLFVANLGQF-VSEQEIKDIFGSF----PGFSRVRMHNK-------------GG--------------------- 142 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~-~te~~L~~~F~~~----G~v~~v~l~~~-------------~~--------------------- 142 (206)
....++|-|.||.++ +.-.||..+|+.| |.|.+|.|... +.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345689999999987 8889999999876 68999988431 11
Q ss_pred --------C-------C--EEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 143 --------S-------P--VAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 143 --------~-------g--~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
| + ||.|+|++.+.|......++|..+..+ +..|-+.|--
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS-~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS-ANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc-cceeeeeecC
Confidence 1 1 899999999999999999999999774 5566666643
No 143
>KOG4410|consensus
Probab=90.88 E-value=0.4 Score=40.94 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=40.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHH
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNF 155 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~ 155 (206)
...||++||+.++...||+..+.+-|.+- ..|.+++..+-||+.|.|...
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNRKG 379 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCccC
Confidence 45699999999999999999998877642 445557788899999998643
No 144
>KOG0804|consensus
Probab=89.05 E-value=2.5 Score=38.33 Aligned_cols=66 Identities=18% Similarity=0.318 Sum_probs=56.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCC-CCeeEEEEecCCC--CCEEEEEeCCHHHHHHHHHHhCCCeecC
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSF-PGFSRVRMHNKGG--SPVAFIEYTDVNFAIQAMSNLNGSYLAS 170 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~-G~v~~v~l~~~~~--~g~aFV~f~~~~~A~~Al~~Lng~~i~~ 170 (206)
++.|+|-.+|-.++-.||-.+...| -.|..+++++|+. +=..+|+|.+.++|..=...+||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7899999999999999999988755 5788999998733 2377899999999999999999998854
No 145
>KOG4210|consensus
Probab=84.00 E-value=0.87 Score=39.04 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=52.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCee
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYL 168 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i 168 (206)
..+++|++++...+.+.+...+|..+|.+....+... .+++++.+.|...+.+..|+.......+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~ 155 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVL 155 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccc
Confidence 3579999999999999989999999998777665442 5778999999999999999954433344
No 146
>KOG2193|consensus
Probab=83.09 E-value=0.056 Score=48.25 Aligned_cols=76 Identities=14% Similarity=0.282 Sum_probs=62.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCC-CCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGG-SPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~-~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
++++-|.|+++-...+.|..|+..||.++.|..+.-.. .-.--|+|...+.+..||..|||..+... .++|.|--.
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~---~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQ---HLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhh---hhhcccCch
Confidence 57799999999999999999999999999987654211 12445789999999999999999999765 899988543
No 147
>KOG4676|consensus
Probab=81.77 E-value=0.3 Score=43.32 Aligned_cols=63 Identities=16% Similarity=0.006 Sum_probs=52.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCee
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYL 168 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i 168 (206)
.++++|++|...+...++-++|..+|+|....+..+....+|-++|....+...|++ .+|..+
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhh
Confidence 478999999999999999999999999988877655555678899999888888884 555544
No 148
>KOG4483|consensus
Probab=80.30 E-value=7.1 Score=35.01 Aligned_cols=54 Identities=13% Similarity=0.200 Sum_probs=44.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCC-eeEEEEecCCCCCEEEEEeCCHHHHHHHHH
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPG-FSRVRMHNKGGSPVAFIEYTDVNFAIQAMS 161 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~-v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~ 161 (206)
-..|-|.+++.....+||-.+|+.|++ -.+|+++.+. .+|-.|.+...|..||.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhh
Confidence 468899999999999999999999974 3456555443 79999999999999983
No 149
>KOG4660|consensus
Probab=74.37 E-value=5.4 Score=36.98 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=51.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcC----------------------------CCCeeEEEEecC----CCCCEEEEEeCCH
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGS----------------------------FPGFSRVRMHNK----GGSPVAFIEYTDV 153 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~----------------------------~G~v~~v~l~~~----~~~g~aFV~f~~~ 153 (206)
.++-|.|++..-+..+|.++... .|.-.-+.+..| .+.|||||.|-+.
T Consensus 362 tt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp 441 (549)
T KOG4660|consen 362 TTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSP 441 (549)
T ss_pred hhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCH
Confidence 45667777766666666665542 232223333333 3447999999999
Q ss_pred HHHHHHHHHhCCCeecCCC-CceEEEEeccCc
Q psy11527 154 NFAIQAMSNLNGSYLASSD-RGAIRIEYAKTK 184 (206)
Q Consensus 154 ~~A~~Al~~Lng~~i~~~~-g~~l~V~~ak~~ 184 (206)
+.+.+..+++||+.+..-. .....+.||+-.
T Consensus 442 ~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 442 EAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred HHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 9999999999999875321 235567777543
No 150
>KOG4019|consensus
Probab=68.34 E-value=6.2 Score=31.58 Aligned_cols=75 Identities=9% Similarity=0.185 Sum_probs=53.7
Q ss_pred CEEEEcCCCCCCcH-----HHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 106 STLFVANLGQFVSE-----QEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 106 ~~LfV~nL~~~~te-----~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
.++.+.++..++-. ...+.+|.+|-+..-..+++ +.++-.|.|.+.+.|.+|...+++..+.++ ..++.-|
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~--~~~k~yf 86 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSFNGK--NELKLYF 86 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhcccCCC--ceEEEEE
Confidence 56778888765322 23456777777665555543 445677899999999999999999999764 3777777
Q ss_pred ccCc
Q psy11527 181 AKTK 184 (206)
Q Consensus 181 ak~~ 184 (206)
+...
T Consensus 87 aQ~~ 90 (193)
T KOG4019|consen 87 AQPG 90 (193)
T ss_pred ccCC
Confidence 7654
No 151
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=65.28 E-value=29 Score=23.05 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhC
Q psy11527 120 QEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLN 164 (206)
Q Consensus 120 ~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Ln 164 (206)
.++.+.+..+| +...++.--+..++.|+-+.+.+.++++.+.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677778888 666677543337799999999999888887763
No 152
>KOG2891|consensus
Probab=63.05 E-value=3.8 Score=35.09 Aligned_cols=79 Identities=20% Similarity=0.367 Sum_probs=48.1
Q ss_pred CEEEEcCCCCC------------CcHHHHHHHhcCCCCeeEEEEec-C--------CC-----CCEEE---------EEe
Q psy11527 106 STLFVANLGQF------------VSEQEIKDIFGSFPGFSRVRMHN-K--------GG-----SPVAF---------IEY 150 (206)
Q Consensus 106 ~~LfV~nL~~~------------~te~~L~~~F~~~G~v~~v~l~~-~--------~~-----~g~aF---------V~f 150 (206)
.|||+.+||-. -+++-|+..|..||.|..|.|.. | +. .||+| |.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 47777776642 46778999999999999988743 1 11 13333 444
Q ss_pred CCHHHHHHHHHHhCCCeecCC-CC----ceEEEEeccCc
Q psy11527 151 TDVNFAIQAMSNLNGSYLASS-DR----GAIRIEYAKTK 184 (206)
Q Consensus 151 ~~~~~A~~Al~~Lng~~i~~~-~g----~~l~V~~ak~~ 184 (206)
..-..-..|+..|.|..+..+ ++ ..++|.|.+++
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 444445566777777665322 11 25677776654
No 153
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=61.46 E-value=15 Score=31.62 Aligned_cols=80 Identities=6% Similarity=0.168 Sum_probs=55.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC-----------CCCEEEEEeCCHHHHHH----HHHHhCCC
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG-----------GSPVAFIEYTDVNFAIQ----AMSNLNGS 166 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~-----------~~g~aFV~f~~~~~A~~----Al~~Lng~ 166 (206)
.-..|.|...|+..+++-..+-+-|-+||.|++|.++.+. ......+.|-+.+.+.. .++.|..+
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3346789999999999999999999999999999998753 12467788888766433 34444433
Q ss_pred eecCCCCceEEEEecc
Q psy11527 167 YLASSDRGAIRIEYAK 182 (206)
Q Consensus 167 ~i~~~~g~~l~V~~ak 182 (206)
+-.- ....|+|.|..
T Consensus 92 K~~L-~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKL-KSESLTLSFVS 106 (309)
T ss_pred HHhc-CCcceeEEEEE
Confidence 2211 12367777654
No 154
>KOG4454|consensus
Probab=58.90 E-value=2.5 Score=34.94 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=54.3
Q ss_pred CCCCEEEEcC----CCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeec
Q psy11527 103 SPCSTLFVAN----LGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLA 169 (206)
Q Consensus 103 ~~~~~LfV~n----L~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~ 169 (206)
+...+++.|+ |...++++.+.+.|++-|.++.+++..+ +.+.++|+++.-..+.-.+++..++....
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 3457888898 8889999999999999999999988664 35569999998887777888777666553
No 155
>KOG4365|consensus
Probab=54.88 E-value=2.5 Score=38.27 Aligned_cols=79 Identities=8% Similarity=-0.123 Sum_probs=56.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC--C--CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK--G--GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~--~--~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
.+.|+..|+-..+++++.-+|.-||-|.-+.+.+. + .+..+||+-.. .++..+|+-+....+.+. .+|+..+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~---~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFES---QDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhh---hhhhhcC
Confidence 35677888888999999999999999988876543 1 22367776553 456677777777777665 7788877
Q ss_pred cCccccc
Q psy11527 182 KTKMAEF 188 (206)
Q Consensus 182 k~~~~~~ 188 (206)
+.....+
T Consensus 80 ~~s~~~r 86 (572)
T KOG4365|consen 80 PSSSEKR 86 (572)
T ss_pred chhhhhh
Confidence 6654333
No 156
>KOG2295|consensus
Probab=54.58 E-value=2.4 Score=39.41 Aligned_cols=66 Identities=24% Similarity=0.290 Sum_probs=54.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecC
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLAS 170 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~ 170 (206)
.++||+.|+.++++-.+|..++..+..+.++.+... .-..++.|+|.--..-..|+.+||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 468999999999999999999999988888766443 222477899998888888889999988754
No 157
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=53.86 E-value=26 Score=22.96 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=16.5
Q ss_pred HHHHHHhcCCCCeeEEEEe
Q psy11527 120 QEIKDIFGSFPGFSRVRMH 138 (206)
Q Consensus 120 ~~L~~~F~~~G~v~~v~l~ 138 (206)
.+||++|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999887774
No 158
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=53.51 E-value=53 Score=20.48 Aligned_cols=54 Identities=15% Similarity=0.258 Sum_probs=40.1
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCH----HHHHHHHHH
Q psy11527 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDV----NFAIQAMSN 162 (206)
Q Consensus 107 ~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~----~~A~~Al~~ 162 (206)
|+.|.|+.-.--...+++.+...-+|.++.+.. ..+-.-|+|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~--~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDL--ETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEET--TTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEEC--CCCEEEEEEecCCCCHHHHHHHHHH
Confidence 577888877767788999999999999998854 446788888754 445555543
No 159
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=52.38 E-value=35 Score=23.87 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=32.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC-CCCCEEEEEeCC
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-GGSPVAFIEYTD 152 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~-~~~g~aFV~f~~ 152 (206)
..-+|||+++..+.|.-.+.+.+..+.-.-+-+..+ +..||.|-...+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G~ 73 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLGD 73 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeCC
Confidence 356999999999999887877775544333322222 466788877743
No 160
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=47.16 E-value=79 Score=22.03 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=33.7
Q ss_pred cHHHHHHHhcCCC-CeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhC
Q psy11527 118 SEQEIKDIFGSFP-GFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLN 164 (206)
Q Consensus 118 te~~L~~~F~~~G-~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Ln 164 (206)
..+.++++++.+| +++++.+....---+..+++.|.+.|.++.-.+.
T Consensus 21 R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 21 RAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 3456777887665 8888888764433477889999998887765543
No 161
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=46.34 E-value=13 Score=26.09 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhc
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFG 127 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~ 127 (206)
..++|.|.|||...++++|++.++
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 458999999999999999997653
No 162
>PF14893 PNMA: PNMA
Probab=44.26 E-value=23 Score=31.04 Aligned_cols=51 Identities=18% Similarity=0.381 Sum_probs=32.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhc----CCCCeeEE-EEec-CCCCCEEEEEeCCH
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFG----SFPGFSRV-RMHN-KGGSPVAFIEYTDV 153 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~----~~G~v~~v-~l~~-~~~~g~aFV~f~~~ 153 (206)
+.-+.|.|.++|.+|+++++++.+. ..|...-+ ++++ +.+..-++|+|.+.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 3457899999999999999887664 44543211 1111 12334677887753
No 163
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=42.87 E-value=16 Score=21.31 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=10.3
Q ss_pred CCCcHHHHHHHhcCCCC
Q psy11527 115 QFVSEQEIKDIFGSFPG 131 (206)
Q Consensus 115 ~~~te~~L~~~F~~~G~ 131 (206)
.++++++|+++|.+.++
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46789999999987543
No 164
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=42.27 E-value=79 Score=21.97 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=38.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhcC-CC-CeeEEEEecC-CCCCEEEEEeCCHHHHHHHHHH
Q psy11527 107 TLFVANLGQFVSEQEIKDIFGS-FP-GFSRVRMHNK-GGSPVAFIEYTDVNFAIQAMSN 162 (206)
Q Consensus 107 ~LfV~nL~~~~te~~L~~~F~~-~G-~v~~v~l~~~-~~~g~aFV~f~~~~~A~~Al~~ 162 (206)
+-|+--++.+.+..++++.++. || .|.+|....- .+.-=|||.+....+|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 4455567778899998888865 55 6677766542 2224799999998888776543
No 165
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=41.14 E-value=44 Score=26.35 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=33.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK 140 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~ 140 (206)
......+++++++..+++.++...|..+|.+....+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 445679999999999999999999999999977766543
No 166
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=40.74 E-value=18 Score=26.65 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=23.7
Q ss_pred cHHHHHHHhcCCCCeeEEEEecC--CCCCEEEEEeCCHHH-HHHHH
Q psy11527 118 SEQEIKDIFGSFPGFSRVRMHNK--GGSPVAFIEYTDVNF-AIQAM 160 (206)
Q Consensus 118 te~~L~~~F~~~G~v~~v~l~~~--~~~g~aFV~f~~~~~-A~~Al 160 (206)
+.++|++.|+.|..++ ++.+.+ +..|++.|+|.+--. -..|+
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 4578999998898775 444333 556899999987544 33444
No 167
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=39.68 E-value=72 Score=21.84 Aligned_cols=37 Identities=5% Similarity=-0.063 Sum_probs=26.3
Q ss_pred CeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCee
Q psy11527 131 GFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYL 168 (206)
Q Consensus 131 ~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i 168 (206)
.|.++... +.-+||-|||=.+..++.+|++.+.+...
T Consensus 33 ~I~Si~~~-~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAP-DSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE--TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEe-CCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 55666544 57899999999999999999988766554
No 168
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=37.54 E-value=95 Score=18.79 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=27.7
Q ss_pred HHHHHHhcCCC-CeeEEEEecCC-CCCEEEEEeCCHHHHHHHH
Q psy11527 120 QEIKDIFGSFP-GFSRVRMHNKG-GSPVAFIEYTDVNFAIQAM 160 (206)
Q Consensus 120 ~~L~~~F~~~G-~v~~v~l~~~~-~~g~aFV~f~~~~~A~~Al 160 (206)
.++-++|...| .|..+.+.... ......+.+++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 44556676665 77777765543 4557778888877777765
No 169
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=36.38 E-value=1.2e+02 Score=20.69 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=37.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhcC-CC-CeeEEEEecC-CCCCEEEEEeCCHHHHHHHHH
Q psy11527 107 TLFVANLGQFVSEQEIKDIFGS-FP-GFSRVRMHNK-GGSPVAFIEYTDVNFAIQAMS 161 (206)
Q Consensus 107 ~LfV~nL~~~~te~~L~~~F~~-~G-~v~~v~l~~~-~~~g~aFV~f~~~~~A~~Al~ 161 (206)
+-|+-.++.+.+..|+++.++. || .|.+|....- .+--=|||.+.....|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 4566677889999999877764 55 6666655432 222378999988877776543
No 170
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=36.38 E-value=65 Score=23.08 Aligned_cols=48 Identities=8% Similarity=0.100 Sum_probs=31.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCC--CeeEEEEecCCCCCEEEEEeCCH
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFP--GFSRVRMHNKGGSPVAFIEYTDV 153 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G--~v~~v~l~~~~~~g~aFV~f~~~ 153 (206)
..-+|||+++..+.|.--..+-+.++ .+.=+.-. ++..||.|-++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~-~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT-NTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC-CCCCCcEEEecCCC
Confidence 35699999999998876666655554 43333321 24558999887653
No 171
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=34.41 E-value=9.8 Score=33.41 Aligned_cols=48 Identities=15% Similarity=0.014 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCC
Q psy11527 119 EQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGS 166 (206)
Q Consensus 119 e~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~ 166 (206)
...+.+.+.+.|+|..-.|.+--+-|.+||-.-..++++++++.|++.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 355677777888887766655456678999999999999999999875
No 172
>KOG4008|consensus
Probab=33.46 E-value=27 Score=29.15 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=29.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRM 137 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l 137 (206)
....+||+-|+|..++++.|.++.+++|.+..+..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 34679999999999999999999999997665543
No 173
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=33.28 E-value=2.5e+02 Score=26.79 Aligned_cols=68 Identities=9% Similarity=0.175 Sum_probs=48.7
Q ss_pred CEEEEcCCC--CCCcHHHHHHHhcCCCCeeE-----EEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 106 STLFVANLG--QFVSEQEIKDIFGSFPGFSR-----VRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 106 ~~LfV~nL~--~~~te~~L~~~F~~~G~v~~-----v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
.++|| |+. ..++..+|-.++..-+.|.. |+|.. .|.||+-.. ..|...+..|++..+.++ .|.|
T Consensus 487 ~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~----~~s~v~~~~-~~~~~~~~~~~~~~~~~~---~~~~ 557 (629)
T PRK11634 487 QLYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA----SHSTIELPK-GMPGEVLQHFTRTRILNK---PMNM 557 (629)
T ss_pred EEEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC----CceEEEcCh-hhHHHHHHHhccccccCC---ceEE
Confidence 34555 443 45888888888876665543 55543 389999764 568888999999999664 9999
Q ss_pred Eecc
Q psy11527 179 EYAK 182 (206)
Q Consensus 179 ~~ak 182 (206)
+.++
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 9875
No 174
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=31.91 E-value=41 Score=28.77 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=17.9
Q ss_pred EEEEeCCHHHHHHHHHHhCCC
Q psy11527 146 AFIEYTDVNFAIQAMSNLNGS 166 (206)
Q Consensus 146 aFV~f~~~~~A~~Al~~Lng~ 166 (206)
|||+|++..+|..|++.+...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~ 21 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK 21 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC
Confidence 799999999999999875444
No 175
>KOG0862|consensus
Probab=31.02 E-value=37 Score=27.95 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=18.4
Q ss_pred HHHHHHh-cCCCCeeEEEEecCCCCCEEEEEeCCH
Q psy11527 120 QEIKDIF-GSFPGFSRVRMHNKGGSPVAFIEYTDV 153 (206)
Q Consensus 120 ~~L~~~F-~~~G~v~~v~l~~~~~~g~aFV~f~~~ 153 (206)
+||.+-| ..||. .+.....|+|+||+|++-
T Consensus 89 edL~~EF~~~~~~----~~~~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGK----NIIQPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhccc----ccCCccCCCeeEEehhHH
Confidence 4454444 35664 222235778999999974
No 176
>KOG0226|consensus
Probab=30.29 E-value=1.7e+02 Score=24.92 Aligned_cols=66 Identities=15% Similarity=0.301 Sum_probs=45.4
Q ss_pred CCEEEEcCCCCCCcHHH-H--HHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecC
Q psy11527 105 CSTLFVANLGQFVSEQE-I--KDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLAS 170 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~-L--~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~ 170 (206)
.-.+|++++...+..+- | ...|+.|-.+...+++++ ...+++|+.|.+...-.++-..=+++++..
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~ 167 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGK 167 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccC
Confidence 34567777766665544 3 677888887777777665 455799999998777777766666666643
No 177
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=30.14 E-value=15 Score=23.39 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=8.7
Q ss_pred CCCCEEEEEeCC
Q psy11527 141 GGSPVAFIEYTD 152 (206)
Q Consensus 141 ~~~g~aFV~f~~ 152 (206)
..+|||||..++
T Consensus 6 ~~~GfGFv~~~~ 17 (58)
T PF08206_consen 6 HPKGFGFVIPDD 17 (58)
T ss_dssp -SSS-EEEEECT
T ss_pred EcCCCEEEEECC
Confidence 367899999997
No 178
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=29.70 E-value=1.3e+02 Score=21.23 Aligned_cols=55 Identities=9% Similarity=0.106 Sum_probs=35.3
Q ss_pred CCCCCCcHHHHHHHhcCCCC-eeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCC
Q psy11527 112 NLGQFVSEQEIKDIFGSFPG-FSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGS 166 (206)
Q Consensus 112 nL~~~~te~~L~~~F~~~G~-v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~ 166 (206)
.+-+.++...+.+-|-.-|. -+...+-+|-=+++|-|+|.+.+.+..|.+.|-..
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lrel 74 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLREL 74 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHHHH
Confidence 45566777766665654442 11222323333469999999999999998887543
No 179
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=24.80 E-value=90 Score=28.38 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=58.6
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhcCC----CCeeEEEEecC-------------C----------------------
Q psy11527 102 MSPCSTLFVANLGQF-VSEQEIKDIFGSF----PGFSRVRMHNK-------------G---------------------- 141 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~-~te~~L~~~F~~~----G~v~~v~l~~~-------------~---------------------- 141 (206)
+.+..+|-|-||.++ +...+|..+|+.| |.|..|.|... +
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 556789999999987 8889999999865 57777776321 0
Q ss_pred ---------------CCC-------------------EEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 142 ---------------GSP-------------------VAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 142 ---------------~~g-------------------~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
.+| ||.|++++.+.+......++|..+..+ +..+-+.|-
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s-an~~DLRfv 295 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS-ANVLDLRFV 295 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc-cceeeeeec
Confidence 011 788999999999998899999888663 455555554
No 180
>KOG1295|consensus
Probab=23.77 E-value=1.5e+02 Score=26.50 Aligned_cols=66 Identities=12% Similarity=0.202 Sum_probs=45.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeE-EEEecC------CCCCEEEEEeCCHHHHHHHHHHhCCCeecCC
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSR-VRMHNK------GGSPVAFIEYTDVNFAIQAMSNLNGSYLASS 171 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~-v~l~~~------~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~ 171 (206)
..+.|.+||...++++|.+-...|-.=.. ..+... ..-+.+||.|.+.++...=...++|+.+...
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 57889999999999888776666542111 111111 1235889999999998777788899887654
No 181
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=23.59 E-value=2e+02 Score=18.08 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=28.1
Q ss_pred HHHHHHhcCCC-CeeEEEEecCCCCCEEEEEeCCHHHHHHHHH
Q psy11527 120 QEIKDIFGSFP-GFSRVRMHNKGGSPVAFIEYTDVNFAIQAMS 161 (206)
Q Consensus 120 ~~L~~~F~~~G-~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~ 161 (206)
.++-++|.+.| .|.++.......+++--+.+++.+.|.++++
T Consensus 16 a~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 16 AAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALK 58 (66)
T ss_pred HHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 56778887776 7888776554445555566777666666663
No 182
>PHA01632 hypothetical protein
Probab=23.21 E-value=77 Score=20.35 Aligned_cols=20 Identities=15% Similarity=0.394 Sum_probs=16.1
Q ss_pred EEcCCCCCCcHHHHHHHhcC
Q psy11527 109 FVANLGQFVSEQEIKDIFGS 128 (206)
Q Consensus 109 fV~nL~~~~te~~L~~~F~~ 128 (206)
.|-.+|..-||++|++++.+
T Consensus 20 lieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHH
Confidence 34689999999999987653
No 183
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=22.89 E-value=1.9e+02 Score=17.56 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=26.7
Q ss_pred CCCcHHHHHHHhcCCC-CeeEEEEecCCCCCEE--EEEeCCHHHHHHHHHHhC
Q psy11527 115 QFVSEQEIKDIFGSFP-GFSRVRMHNKGGSPVA--FIEYTDVNFAIQAMSNLN 164 (206)
Q Consensus 115 ~~~te~~L~~~F~~~G-~v~~v~l~~~~~~g~a--FV~f~~~~~A~~Al~~Ln 164 (206)
..-.-.++-++|+.+| .|.++........+++ .+++++. .....++.|.
T Consensus 9 ~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~-~~~~l~~~l~ 60 (71)
T cd04879 9 VPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP-VPEEVLEELK 60 (71)
T ss_pred CCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC-CCHHHHHHHH
Confidence 3334567788888876 7777777553312444 4444443 2334444443
No 184
>PRK11901 hypothetical protein; Reviewed
Probab=22.33 E-value=1.3e+02 Score=26.40 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=34.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC--CCCC-EE--EEEeCCHHHHHHHHHHhCC
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK--GGSP-VA--FIEYTDVNFAIQAMSNLNG 165 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~--~~~g-~a--FV~f~~~~~A~~Al~~Lng 165 (206)
.-+|-+..+ -+++.|+.+...++ +..+++... +++. |. +=+|.+.++|.+|+..|-.
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 445555443 45677877777665 344444432 2222 33 3378999999999988754
No 185
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=22.15 E-value=1.7e+02 Score=20.55 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=28.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcC-C--CCeeEEEEecCCCCCEEEEEeCC
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGS-F--PGFSRVRMHNKGGSPVAFIEYTD 152 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~-~--G~v~~v~l~~~~~~g~aFV~f~~ 152 (206)
..-+|||+++..+.|.--..+-+. . |.+.=+.-. ++..||.|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~-~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSS-NTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeC-CCCCCcEEEecCC
Confidence 357999999999888654444443 2 443323222 2456788877665
No 186
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=22.02 E-value=28 Score=23.02 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhC
Q psy11527 120 QEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLN 164 (206)
Q Consensus 120 ~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Ln 164 (206)
++|.+.|..+..+.++.-+ .+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh------hhccCCCCHHHHHHHHHHhh
Confidence 5778888766554433211 58999999999988887653
No 187
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=21.92 E-value=2.9e+02 Score=21.07 Aligned_cols=35 Identities=6% Similarity=-0.050 Sum_probs=27.1
Q ss_pred eeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCe
Q psy11527 132 FSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSY 167 (206)
Q Consensus 132 v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~ 167 (206)
|.++.+. +.-.||-||+....+++..+++.+.+..
T Consensus 36 i~~i~vp-~~fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 36 IYAILAP-PELKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred EEEEEcc-CCCCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 5666554 4678999999998889999988876643
No 188
>KOG2855|consensus
Probab=21.68 E-value=1.2e+02 Score=26.61 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=33.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCC-CeeEEEEecCCCCCEEEEEe
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFP-GFSRVRMHNKGGSPVAFIEY 150 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G-~v~~v~l~~~~~~g~aFV~f 150 (206)
..++-|||+|..+.--++|...++++| .+..++...+...++++|.-
T Consensus 60 G~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v 107 (330)
T KOG2855|consen 60 GGRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATITV 107 (330)
T ss_pred CcceeeeecccchhhHHHHHHHHhhCCcccccceecCCCceEEEEEEE
Confidence 368999999999988888999999877 33445554444445666553
No 189
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=21.30 E-value=88 Score=19.94 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=11.2
Q ss_pred CCCCCEEEEEeCCHH
Q psy11527 140 KGGSPVAFIEYTDVN 154 (206)
Q Consensus 140 ~~~~g~aFV~f~~~~ 154 (206)
+..+||+||+-.+..
T Consensus 9 ~~~kgyGFI~~~~~~ 23 (66)
T PF00313_consen 9 DDEKGYGFITSDDGG 23 (66)
T ss_dssp ETTTTEEEEEETTSS
T ss_pred ECCCCceEEEEcccc
Confidence 357789999987643
No 190
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=20.69 E-value=1.5e+02 Score=19.52 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=23.2
Q ss_pred CcHHHHHHHhcCCCCeeEEEEecC--CCCCEEEE
Q psy11527 117 VSEQEIKDIFGSFPGFSRVRMHNK--GGSPVAFI 148 (206)
Q Consensus 117 ~te~~L~~~F~~~G~v~~v~l~~~--~~~g~aFV 148 (206)
.-+.+|++.|-+-..|.++.|..+ -.+|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 345678889988899999988764 24456665
No 191
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.59 E-value=3e+02 Score=21.42 Aligned_cols=49 Identities=12% Similarity=0.280 Sum_probs=34.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCC---CCeeEEEEecCC-------------CCC-EEEEEeCCHH
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSF---PGFSRVRMHNKG-------------GSP-VAFIEYTDVN 154 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~---G~v~~v~l~~~~-------------~~g-~aFV~f~~~~ 154 (206)
.+||+.-+++.+++++.+++-+.= +++++|.+-+.+ ++. |-+|.|++-.
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~ 153 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGK 153 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccch
Confidence 589999999999999988887654 566666664432 223 6677776643
No 192
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.51 E-value=2.8e+02 Score=25.62 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=38.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhc----CCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCC
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFG----SFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNG 165 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~----~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng 165 (206)
+..+-++.-..+.+.-+|..+|. .+|-|.++.+... ..+...++.|.+.++|.+++..+-.
T Consensus 189 G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 189 GEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred CcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh
Confidence 34444443222233457777775 5777777765332 2334668899999999999887643
No 193
>PRK15464 cold shock-like protein CspH; Provisional
Probab=20.41 E-value=72 Score=21.26 Aligned_cols=13 Identities=31% Similarity=0.238 Sum_probs=10.1
Q ss_pred CCCCCEEEEEeCC
Q psy11527 140 KGGSPVAFIEYTD 152 (206)
Q Consensus 140 ~~~~g~aFV~f~~ 152 (206)
+..|||+||+=.+
T Consensus 13 n~~KGfGFI~~~~ 25 (70)
T PRK15464 13 DRKSGKGFIIPSD 25 (70)
T ss_pred ECCCCeEEEccCC
Confidence 5678999997665
Done!