Query psy11527
Match_columns 206
No_of_seqs 241 out of 2239
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 20:41:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 2.2E-21 7.4E-26 139.4 10.0 78 103-183 17-98 (99)
2 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.1E-20 1.1E-24 133.4 12.8 83 102-187 12-96 (103)
3 4f25_A Polyadenylate-binding p 99.8 7.9E-21 2.7E-25 139.7 9.2 78 105-185 5-84 (115)
4 2cq1_A PTB-like protein L; RRM 99.8 7.8E-20 2.7E-24 131.9 14.0 81 101-186 11-93 (101)
5 2cq3_A RNA-binding protein 9; 99.8 1.3E-19 4.5E-24 130.1 14.4 82 102-186 12-95 (103)
6 3s8s_A Histone-lysine N-methyl 99.8 1.8E-20 6.2E-25 137.1 9.9 80 103-185 4-87 (110)
7 2khc_A Testis-specific RNP-typ 99.8 7.8E-20 2.7E-24 134.4 13.3 79 101-182 36-118 (118)
8 1sjq_A Polypyrimidine tract-bi 99.8 1.5E-20 5.2E-25 136.6 9.2 81 102-187 13-95 (105)
9 3r27_A HnRNP L, heterogeneous 99.8 2.7E-20 9.2E-25 134.1 10.4 81 101-184 17-97 (100)
10 2dnh_A Bruno-like 5, RNA bindi 99.8 1.1E-19 3.9E-24 130.8 12.5 85 102-186 12-99 (105)
11 2dgo_A Cytotoxic granule-assoc 99.8 1.1E-19 3.9E-24 132.9 12.7 85 101-188 11-99 (115)
12 1x5u_A Splicing factor 3B subu 99.8 1.2E-19 4.1E-24 130.6 12.2 82 102-186 12-97 (105)
13 2d9p_A Polyadenylate-binding p 99.8 1.2E-19 4.1E-24 130.3 12.1 82 102-186 12-95 (103)
14 1x4a_A Splicing factor, argini 99.8 2.2E-19 7.5E-24 130.3 13.5 81 102-185 19-100 (109)
15 1wex_A Hypothetical protein (r 99.8 1.5E-19 5E-24 131.1 12.5 80 102-186 12-93 (104)
16 1x4d_A Matrin 3; structural ge 99.8 7.8E-20 2.7E-24 132.2 11.0 79 102-185 12-93 (102)
17 2dnz_A Probable RNA-binding pr 99.8 2.1E-19 7.1E-24 127.0 12.6 80 104-186 4-87 (95)
18 2cpj_A Non-POU domain-containi 99.8 2E-19 6.9E-24 128.3 12.6 80 101-185 11-90 (99)
19 2ad9_A Polypyrimidine tract-bi 99.8 1.1E-19 3.8E-24 134.9 11.3 81 102-187 28-110 (119)
20 2cq0_A Eukaryotic translation 99.8 1.7E-19 5.7E-24 129.6 11.8 82 101-185 11-96 (103)
21 2fy1_A RNA-binding motif prote 99.8 2E-19 6.9E-24 132.5 12.4 84 102-188 4-90 (116)
22 2dgs_A DAZ-associated protein 99.8 3.4E-19 1.2E-23 127.0 13.1 81 102-186 7-91 (99)
23 2cpz_A CUG triplet repeat RNA- 99.8 2.1E-19 7.3E-24 131.6 12.2 82 102-186 22-107 (115)
24 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.4E-19 4.9E-24 129.5 10.9 82 102-186 9-94 (102)
25 1u6f_A Tcubp1, RNA-binding pro 99.8 5.7E-19 2E-23 133.3 14.7 84 102-188 39-126 (139)
26 2e5h_A Zinc finger CCHC-type a 99.8 3.2E-19 1.1E-23 125.8 12.3 78 102-182 13-94 (94)
27 1x5t_A Splicing factor 3B subu 99.8 1.3E-19 4.6E-24 128.2 10.1 79 104-185 4-87 (96)
28 2dnm_A SRP46 splicing factor; 99.8 2E-19 6.9E-24 129.1 11.1 81 102-185 10-94 (103)
29 2err_A Ataxin-2-binding protei 99.8 1.4E-19 4.6E-24 131.9 10.3 80 102-184 26-107 (109)
30 2cph_A RNA binding motif prote 99.8 4.1E-19 1.4E-23 128.1 12.6 81 102-185 12-98 (107)
31 1sjr_A Polypyrimidine tract-bi 99.8 1.2E-19 4.1E-24 141.5 10.4 81 105-186 46-126 (164)
32 1x4c_A Splicing factor, argini 99.8 6.1E-19 2.1E-23 128.0 13.4 82 103-187 13-96 (108)
33 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-19 4.2E-24 126.0 9.2 79 103-184 4-86 (87)
34 2cqc_A Arginine/serine-rich sp 99.8 2.1E-19 7E-24 126.9 10.5 79 102-183 12-94 (95)
35 2do0_A HnRNP M, heterogeneous 99.8 7.3E-19 2.5E-23 128.3 13.6 81 102-185 12-95 (114)
36 2cpd_A Apobec-1 stimulating pr 99.8 8.5E-19 2.9E-23 125.0 13.4 78 101-185 11-90 (99)
37 1x4h_A RNA-binding protein 28; 99.8 5.9E-19 2E-23 128.1 12.7 82 102-186 12-103 (111)
38 1x5s_A Cold-inducible RNA-bind 99.8 2.8E-19 9.7E-24 128.0 10.7 82 102-186 9-94 (102)
39 1whw_A Hypothetical protein ri 99.8 5.2E-19 1.8E-23 125.9 12.0 82 102-186 5-90 (99)
40 2dgu_A Heterogeneous nuclear r 99.8 5.3E-19 1.8E-23 127.1 12.1 80 102-188 8-87 (103)
41 2cpf_A RNA binding motif prote 99.8 2.6E-19 9E-24 127.3 10.3 81 103-186 3-90 (98)
42 2lxi_A RNA-binding protein 10; 99.8 4.1E-20 1.4E-24 130.6 6.0 78 105-185 1-84 (91)
43 1why_A Hypothetical protein ri 99.8 6.1E-19 2.1E-23 125.4 12.1 81 102-185 14-94 (97)
44 2dgp_A Bruno-like 4, RNA bindi 99.8 3.3E-19 1.1E-23 128.5 10.9 84 102-185 10-97 (106)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2E-19 6.8E-24 124.4 9.3 77 103-182 5-85 (85)
46 2x1f_A MRNA 3'-END-processing 99.8 3.6E-19 1.2E-23 126.3 10.8 79 105-186 2-84 (96)
47 2dnq_A RNA-binding protein 4B; 99.8 6E-19 2.1E-23 123.7 11.9 78 102-186 5-82 (90)
48 1x4g_A Nucleolysin TIAR; struc 99.8 3.3E-19 1.1E-23 129.5 10.7 80 102-186 22-101 (109)
49 2lkz_A RNA-binding protein 5; 99.8 1.8E-19 6.1E-24 128.6 9.1 77 104-183 8-94 (95)
50 2do4_A Squamous cell carcinoma 99.8 6.2E-19 2.1E-23 125.9 11.9 81 102-185 14-97 (100)
51 3md1_A Nuclear and cytoplasmic 99.8 3.4E-19 1.1E-23 122.7 10.1 76 106-184 2-81 (83)
52 2jvo_A Nucleolar protein 3; nu 99.8 3.6E-19 1.2E-23 129.6 10.7 77 102-185 28-104 (108)
53 2e5j_A Methenyltetrahydrofolat 99.8 4.1E-19 1.4E-23 126.4 10.8 80 102-185 16-95 (97)
54 4a8x_A RNA-binding protein wit 99.8 3.8E-19 1.3E-23 123.6 10.3 77 105-184 4-85 (88)
55 2xnq_A Nuclear polyadenylated 99.8 5.3E-19 1.8E-23 126.2 11.1 77 102-185 19-96 (97)
56 2dgx_A KIAA0430 protein; RRM d 99.8 4E-19 1.4E-23 126.4 10.4 80 103-185 7-91 (96)
57 2dgv_A HnRNP M, heterogeneous 99.8 3.6E-19 1.2E-23 125.0 9.9 81 102-185 5-87 (92)
58 2wbr_A GW182, gawky, LD47780P; 99.8 3.1E-19 1.1E-23 125.2 9.4 74 104-182 6-79 (89)
59 2dng_A Eukaryotic translation 99.8 1.1E-18 3.7E-23 125.4 12.4 80 102-186 12-95 (103)
60 2jvr_A Nucleolar protein 3; RN 99.8 1.6E-19 5.4E-24 132.5 8.1 79 104-185 27-106 (111)
61 2cpe_A RNA-binding protein EWS 99.8 8E-19 2.7E-23 128.0 11.8 82 102-186 12-105 (113)
62 2cqd_A RNA-binding region cont 99.8 1.8E-18 6.2E-23 126.8 13.7 80 102-185 14-97 (116)
63 2a3j_A U1 small nuclear ribonu 99.8 2.7E-19 9.1E-24 134.3 9.3 83 102-187 26-113 (127)
64 2ytc_A PRE-mRNA-splicing facto 99.8 5.8E-19 2E-23 122.2 10.3 76 102-182 9-85 (85)
65 1wf1_A RNA-binding protein RAL 99.8 1E-18 3.5E-23 127.0 12.0 77 103-186 25-102 (110)
66 1x4f_A Matrin 3; structural ge 99.8 7E-19 2.4E-23 129.2 11.1 80 102-186 22-104 (112)
67 2dgt_A RNA-binding protein 30; 99.8 1.3E-18 4.4E-23 122.5 12.0 78 102-186 7-84 (92)
68 1wi8_A EIF-4B, eukaryotic tran 99.8 1.5E-18 5.1E-23 124.8 12.3 79 103-186 13-96 (104)
69 2la4_A Nuclear and cytoplasmic 99.8 3.6E-19 1.2E-23 127.3 9.0 76 104-184 26-101 (101)
70 1x5p_A Negative elongation fac 99.8 2.8E-18 9.7E-23 122.0 13.6 78 102-186 12-89 (97)
71 2kxn_B Transformer-2 protein h 99.8 5.8E-19 2E-23 132.6 10.3 81 102-185 43-127 (129)
72 2kvi_A Nuclear polyadenylated 99.8 5.3E-19 1.8E-23 125.6 9.5 78 102-186 7-85 (96)
73 2div_A TRNA selenocysteine ass 99.8 4.7E-19 1.6E-23 126.2 9.1 81 102-185 6-95 (99)
74 1oo0_B CG8781-PA, drosophila Y 99.8 6.2E-19 2.1E-23 128.0 9.8 81 102-185 23-107 (110)
75 2ywk_A Putative RNA-binding pr 99.8 4.6E-19 1.6E-23 125.2 8.9 79 102-183 13-94 (95)
76 2hvz_A Splicing factor, argini 99.8 4.9E-19 1.7E-23 126.6 9.1 77 106-186 1-77 (101)
77 2cpi_A CCR4-NOT transcription 99.8 1.1E-18 3.8E-23 127.3 11.1 80 103-185 13-102 (111)
78 2la6_A RNA-binding protein FUS 99.8 1.1E-18 3.9E-23 124.4 10.8 77 103-182 11-99 (99)
79 3ex7_B RNA-binding protein 8A; 99.8 7E-19 2.4E-23 130.7 9.9 83 102-187 19-105 (126)
80 3zzy_A Polypyrimidine tract-bi 99.8 1.1E-18 3.9E-23 131.2 11.1 79 105-185 28-107 (130)
81 2dhg_A TRNA selenocysteine ass 99.8 5.9E-19 2E-23 126.8 9.0 83 102-187 6-93 (104)
82 2jwn_A Embryonic polyadenylate 99.8 2.9E-19 9.8E-24 132.5 7.5 79 104-186 35-117 (124)
83 2fc9_A NCL protein; structure 99.8 1.5E-18 5.2E-23 124.0 11.1 78 102-185 12-92 (101)
84 2jrs_A RNA-binding protein 39; 99.8 1.8E-18 6.2E-23 125.8 11.3 81 102-185 23-107 (108)
85 2cqp_A RNA-binding protein 12; 99.8 6.4E-19 2.2E-23 125.3 8.7 80 102-184 12-95 (98)
86 2cq4_A RNA binding motif prote 99.8 6E-19 2.1E-23 129.0 8.6 79 103-185 23-105 (114)
87 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.2E-18 4.3E-23 134.1 10.8 82 102-186 36-121 (156)
88 2kt5_A RNA and export factor-b 99.8 9.8E-18 3.3E-22 124.3 15.1 80 102-184 32-114 (124)
89 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.7E-19 1.3E-23 127.5 7.1 78 102-184 16-98 (100)
90 1p27_B RNA-binding protein 8A; 99.8 1.2E-18 4.2E-23 125.5 9.7 80 102-184 20-103 (106)
91 2cpx_A Hypothetical protein FL 99.8 1.8E-18 6.1E-23 126.4 10.6 82 102-186 22-107 (115)
92 1x4b_A Heterogeneous nuclear r 99.8 1.4E-18 4.9E-23 127.3 10.1 80 103-186 25-108 (116)
93 2dnp_A RNA-binding protein 14; 99.8 1.7E-18 5.7E-23 121.4 10.0 77 102-185 6-82 (90)
94 3ulh_A THO complex subunit 4; 99.8 1.9E-18 6.4E-23 124.7 10.3 78 102-182 26-106 (107)
95 3ns6_A Eukaryotic translation 99.8 3.1E-19 1.1E-23 128.0 6.1 79 104-184 5-93 (100)
96 1nu4_A U1A RNA binding domain; 99.8 6.5E-19 2.2E-23 124.9 7.6 82 102-186 5-91 (97)
97 2m2b_A RNA-binding protein 10; 99.8 7.2E-19 2.5E-23 131.9 8.2 80 102-185 20-109 (131)
98 3lqv_A PRE-mRNA branch site pr 99.8 1.9E-18 6.5E-23 126.4 10.1 80 103-185 6-86 (115)
99 2rs2_A Musashi-1, RNA-binding 99.8 1.9E-18 6.5E-23 125.8 10.1 81 102-186 22-106 (109)
100 2dh8_A DAZ-associated protein 99.8 1.4E-18 4.7E-23 125.1 9.0 80 102-185 13-96 (105)
101 3ucg_A Polyadenylate-binding p 99.8 2.4E-18 8.3E-23 119.9 9.7 76 105-184 6-85 (89)
102 2cqh_A IGF-II mRNA-binding pro 99.8 1.2E-18 4.2E-23 122.8 8.2 77 103-185 6-84 (93)
103 2cqg_A TDP-43, TAR DNA-binding 99.8 5.4E-18 1.9E-22 121.6 11.7 80 102-186 12-95 (103)
104 3n9u_C Cleavage and polyadenyl 99.8 9.9E-19 3.4E-23 135.5 8.2 78 104-184 54-137 (156)
105 1s79_A Lupus LA protein; RRM, 99.8 8.5E-19 2.9E-23 126.8 7.2 78 103-184 9-89 (103)
106 2e5i_A Heterogeneous nuclear r 99.8 7.2E-18 2.5E-22 126.0 12.4 76 107-185 27-103 (124)
107 1x4e_A RNA binding motif, sing 99.8 6.6E-19 2.3E-23 122.0 6.3 77 103-182 3-83 (85)
108 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 5.3E-18 1.8E-22 127.6 11.6 77 102-181 60-140 (140)
109 2ek1_A RNA-binding protein 12; 99.8 7.2E-19 2.5E-23 124.2 6.4 78 103-183 13-94 (95)
110 2i2y_A Fusion protein consists 99.8 3E-18 1E-22 131.1 10.2 80 102-185 70-149 (150)
111 1x5o_A RNA binding motif, sing 99.8 1.6E-17 5.6E-22 121.2 13.6 83 102-184 22-112 (114)
112 3p5t_L Cleavage and polyadenyl 99.8 4.8E-19 1.6E-23 124.4 5.1 77 106-185 2-84 (90)
113 1fjc_A Nucleolin RBD2, protein 99.8 1.7E-18 5.7E-23 122.7 7.9 82 102-187 13-94 (96)
114 1whx_A Hypothetical protein ri 99.8 3.4E-18 1.2E-22 125.0 9.5 77 104-185 9-85 (111)
115 2dgw_A Probable RNA-binding pr 99.8 7.1E-18 2.4E-22 118.3 10.6 78 103-185 8-88 (91)
116 2nlw_A Eukaryotic translation 99.8 3.9E-18 1.3E-22 123.2 9.5 80 102-184 12-100 (105)
117 2dis_A Unnamed protein product 99.8 4.8E-18 1.6E-22 122.9 9.9 81 103-186 6-94 (109)
118 1wg5_A Heterogeneous nuclear r 99.7 1.2E-17 4.2E-22 120.4 11.7 79 102-184 12-94 (104)
119 2e44_A Insulin-like growth fac 99.7 6.4E-18 2.2E-22 119.6 10.0 78 104-184 14-92 (96)
120 2fc8_A NCL protein; structure 99.7 8.7E-18 3E-22 120.2 10.7 79 102-186 12-94 (102)
121 3s7r_A Heterogeneous nuclear r 99.7 8E-18 2.7E-22 117.0 10.1 76 102-181 8-87 (87)
122 1p1t_A Cleavage stimulation fa 99.7 2.3E-18 7.9E-23 123.5 7.5 81 104-187 7-91 (104)
123 3d2w_A TAR DNA-binding protein 99.7 7E-18 2.4E-22 118.6 9.7 76 104-185 10-85 (89)
124 2cpy_A RNA-binding protein 12; 99.7 5.2E-18 1.8E-22 124.3 9.1 80 102-185 12-95 (114)
125 3pgw_A U1-A; protein-RNA compl 99.7 3.6E-17 1.2E-21 136.5 14.9 80 101-183 203-282 (282)
126 1wg1_A KIAA1579 protein, homol 99.7 7.5E-18 2.6E-22 117.8 9.0 76 104-185 4-79 (88)
127 1fj7_A Nucleolin RBD1, protein 99.7 1.6E-18 5.6E-23 123.9 5.7 79 103-186 15-97 (101)
128 2lea_A Serine/arginine-rich sp 99.7 3.2E-18 1.1E-22 129.4 7.4 81 102-185 44-128 (135)
129 2kn4_A Immunoglobulin G-bindin 99.7 1.3E-17 4.6E-22 128.2 11.0 80 103-185 68-151 (158)
130 2diu_A KIAA0430 protein; struc 99.7 1.2E-17 4.2E-22 118.3 9.7 76 103-187 6-87 (96)
131 1wez_A HnRNP H', FTP-3, hetero 99.7 1.4E-17 4.7E-22 120.0 10.2 78 103-185 13-93 (102)
132 2krb_A Eukaryotic translation 99.7 3.2E-18 1.1E-22 117.8 6.4 71 105-178 1-80 (81)
133 2cq2_A Hypothetical protein LO 99.7 7.2E-18 2.5E-22 124.1 8.5 80 103-185 23-107 (114)
134 3tyt_A Heterogeneous nuclear r 99.7 1.4E-17 4.7E-22 134.3 10.7 78 103-184 2-80 (205)
135 4f02_A Polyadenylate-binding p 99.7 5.1E-18 1.8E-22 136.9 7.4 79 104-185 102-182 (213)
136 2db1_A Heterogeneous nuclear r 99.7 8.6E-18 3E-22 124.1 8.0 78 103-184 15-98 (118)
137 2e5g_A U6 snRNA-specific termi 99.7 2.9E-17 1E-21 116.0 10.4 78 103-185 6-83 (94)
138 3beg_B Splicing factor, argini 99.7 1.5E-17 5.1E-22 122.2 8.9 76 104-185 15-95 (115)
139 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.6E-17 5.3E-22 129.3 9.3 82 102-186 69-154 (165)
140 2ki2_A SS-DNA binding protein 99.7 2.3E-18 7.8E-23 120.5 4.1 76 106-185 2-81 (90)
141 2mss_A Protein (musashi1); RNA 99.7 7.6E-18 2.6E-22 113.9 6.5 71 107-181 1-75 (75)
142 2bz2_A Negative elongation fac 99.7 3.1E-17 1.1E-21 121.8 10.4 77 102-185 36-112 (121)
143 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1E-17 3.6E-22 113.6 6.5 72 106-181 1-76 (77)
144 3egn_A RNA-binding protein 40; 99.7 1.9E-17 6.4E-22 125.7 8.6 81 102-185 42-131 (143)
145 1wf0_A TDP-43, TAR DNA-binding 99.7 3.9E-17 1.3E-21 113.9 9.3 76 104-185 4-79 (88)
146 2lmi_A GRSF-1, G-rich sequence 99.7 6.8E-18 2.3E-22 122.3 5.5 79 102-184 8-92 (107)
147 2hgl_A HNRPF protein, heteroge 99.7 1.3E-17 4.3E-22 126.5 6.6 78 103-184 42-125 (136)
148 2dnn_A RNA-binding protein 12; 99.7 4E-17 1.4E-21 119.2 8.9 76 104-184 15-93 (109)
149 3q2s_C Cleavage and polyadenyl 99.7 1.7E-17 5.8E-22 136.0 7.6 78 104-184 67-150 (229)
150 1wel_A RNA-binding protein 12; 99.7 1.3E-17 4.5E-22 123.8 5.9 79 103-185 23-105 (124)
151 2lcw_A RNA-binding protein FUS 99.5 1.2E-18 4.2E-23 127.8 0.0 82 102-186 4-97 (116)
152 2hzc_A Splicing factor U2AF 65 99.7 6.1E-17 2.1E-21 112.3 8.0 72 103-180 4-86 (87)
153 4f02_A Polyadenylate-binding p 99.7 7.1E-17 2.4E-21 130.1 9.4 79 104-185 14-96 (213)
154 2hgn_A Heterogeneous nuclear r 99.7 1.6E-17 5.5E-22 126.4 4.9 79 103-186 44-125 (139)
155 2f3j_A RNA and export factor b 99.7 1.1E-16 3.8E-21 126.3 9.9 80 102-184 85-167 (177)
156 3md3_A Nuclear and cytoplasmic 99.7 2.6E-16 8.8E-21 120.3 11.5 79 102-183 84-166 (166)
157 1fxl_A Paraneoplastic encephal 99.7 2.6E-16 8.9E-21 120.4 10.7 78 105-185 2-83 (167)
158 1iqt_A AUF1, heterogeneous nuc 99.7 2.4E-17 8.4E-22 111.3 4.2 71 107-181 1-75 (75)
159 1b7f_A Protein (SXL-lethal pro 99.7 2.3E-16 8E-21 121.1 9.8 79 104-185 2-84 (168)
160 3nmr_A Cugbp ELAV-like family 99.7 2.5E-16 8.6E-21 121.5 9.4 82 104-185 2-89 (175)
161 3md3_A Nuclear and cytoplasmic 99.7 2.3E-16 7.7E-21 120.6 8.9 77 106-185 1-80 (166)
162 3nmr_A Cugbp ELAV-like family 99.7 2.6E-16 9E-21 121.4 9.2 79 104-182 94-175 (175)
163 2dit_A HIV TAT specific factor 99.7 1.8E-15 6.1E-20 110.4 13.1 81 102-185 12-103 (112)
164 3pgw_A U1-A; protein-RNA compl 99.7 5.8E-16 2E-20 129.2 11.8 81 102-185 6-91 (282)
165 2xs2_A Deleted in azoospermia- 99.7 5.5E-17 1.9E-21 116.1 4.7 77 104-185 8-87 (102)
166 3pgw_S U1-70K; protein-RNA com 99.7 6.1E-16 2.1E-20 137.9 12.5 80 102-184 99-182 (437)
167 3u1l_A PRE-mRNA-splicing facto 99.7 3E-16 1E-20 129.4 9.4 82 102-185 131-230 (240)
168 2hgm_A HNRPF protein, heteroge 99.7 1.9E-16 6.5E-21 118.5 7.3 76 103-183 40-120 (126)
169 2adc_A Polypyrimidine tract-bi 99.6 3.4E-16 1.2E-20 127.4 8.9 79 102-184 31-110 (229)
170 2yh0_A Splicing factor U2AF 65 99.6 9E-16 3.1E-20 121.0 11.0 80 103-185 112-195 (198)
171 2qfj_A FBP-interacting repress 99.6 8.5E-16 2.9E-20 122.7 10.6 79 104-185 124-206 (216)
172 1b7f_A Protein (SXL-lethal pro 99.6 1.2E-15 4.1E-20 117.1 11.0 78 103-181 87-168 (168)
173 2dnl_A Cytoplasmic polyadenyla 99.6 7.8E-16 2.7E-20 112.6 9.4 74 103-182 6-86 (114)
174 2dha_A FLJ20171 protein; RRM d 99.6 1.4E-16 4.8E-21 118.8 5.0 78 103-184 21-105 (123)
175 1fje_B Nucleolin RBD12, protei 99.6 9.9E-16 3.4E-20 118.7 9.8 78 103-184 97-174 (175)
176 2g4b_A Splicing factor U2AF 65 99.6 9.2E-16 3.2E-20 118.3 9.5 76 104-182 93-172 (172)
177 1l3k_A Heterogeneous nuclear r 99.6 9.4E-16 3.2E-20 120.7 9.6 82 103-188 102-187 (196)
178 2cjk_A Nuclear polyadenylated 99.6 5.9E-16 2E-20 118.9 7.3 77 104-184 86-166 (167)
179 1l3k_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 120.5 8.9 80 102-185 10-93 (196)
180 1qm9_A Polypyrimidine tract-bi 99.6 7.8E-16 2.7E-20 121.9 8.1 76 105-184 3-79 (198)
181 2qfj_A FBP-interacting repress 99.6 1.9E-15 6.4E-20 120.7 10.2 79 104-185 27-109 (216)
182 2pe8_A Splicing factor 45; RRM 99.6 4.2E-15 1.4E-19 107.7 10.3 77 104-183 7-93 (105)
183 2j8a_A Histone-lysine N-methyl 99.6 8.7E-16 3E-20 114.8 6.6 76 106-184 3-96 (136)
184 2adc_A Polypyrimidine tract-bi 99.6 3.6E-15 1.2E-19 121.3 10.5 80 102-184 148-228 (229)
185 1fxl_A Paraneoplastic encephal 99.6 3E-15 1E-19 114.5 9.4 77 104-181 87-167 (167)
186 1qm9_A Polypyrimidine tract-bi 99.6 2.7E-15 9.1E-20 118.8 8.6 80 102-184 117-197 (198)
187 3tyt_A Heterogeneous nuclear r 99.6 1.9E-15 6.6E-20 121.7 7.9 79 103-181 121-204 (205)
188 3sde_A Paraspeckle component 1 99.6 6.8E-15 2.3E-19 122.1 11.1 78 102-184 19-96 (261)
189 2voo_A Lupus LA protein; RNA-b 99.6 5.2E-15 1.8E-19 118.2 9.4 76 105-184 109-187 (193)
190 3tht_A Alkylated DNA repair pr 99.6 5E-15 1.7E-19 128.0 9.9 80 102-183 15-98 (345)
191 2cjk_A Nuclear polyadenylated 99.6 5.8E-15 2E-19 113.3 7.9 76 104-184 2-81 (167)
192 3smz_A Protein raver-1, ribonu 99.6 1E-14 3.4E-19 121.7 9.8 81 103-186 182-266 (284)
193 2ghp_A U4/U6 snRNA-associated 99.6 8.7E-15 3E-19 122.6 8.9 79 102-184 207-291 (292)
194 2yh0_A Splicing factor U2AF 65 99.5 1.9E-14 6.4E-19 113.4 9.5 75 104-184 3-88 (198)
195 2g4b_A Splicing factor U2AF 65 99.5 1.7E-14 5.8E-19 111.2 8.8 75 104-184 3-88 (172)
196 3sde_A Paraspeckle component 1 99.5 3.1E-14 1.1E-18 118.1 10.2 82 104-185 95-180 (261)
197 1fje_B Nucleolin RBD12, protei 99.5 4.1E-15 1.4E-19 115.2 4.3 80 102-185 10-92 (175)
198 3smz_A Protein raver-1, ribonu 99.5 4.4E-14 1.5E-18 117.8 10.7 75 104-184 21-95 (284)
199 3v4m_A Splicing factor U2AF 65 99.5 5.3E-14 1.8E-18 101.8 9.3 79 103-184 3-97 (105)
200 2d9o_A DNAJ (HSP40) homolog, s 99.5 3.5E-13 1.2E-17 96.8 12.1 76 105-186 10-92 (100)
201 2ghp_A U4/U6 snRNA-associated 99.5 7.9E-14 2.7E-18 116.7 8.9 79 104-185 116-198 (292)
202 1jmt_A Splicing factor U2AF 35 99.5 2.7E-14 9.3E-19 103.2 4.2 69 110-181 20-103 (104)
203 3s6e_A RNA-binding protein 39; 99.4 5.2E-13 1.8E-17 98.1 10.1 76 105-183 7-92 (114)
204 3ue2_A Poly(U)-binding-splicin 99.4 5.9E-13 2E-17 98.3 9.5 77 104-183 19-108 (118)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 2.9E-12 9.8E-17 89.9 8.7 78 102-187 4-89 (91)
206 1owx_A Lupus LA protein, SS-B, 99.2 6.5E-11 2.2E-15 87.6 10.3 77 102-183 15-95 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 1.3E-10 4.3E-15 82.0 6.4 73 102-182 12-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 2.6E-09 8.9E-14 86.1 7.4 64 117-183 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.6 2.3E-07 7.8E-12 66.8 8.2 73 105-182 21-98 (117)
210 1wey_A Calcipressin 1; structu 98.0 1.6E-05 5.6E-10 56.7 6.7 74 106-184 6-84 (104)
211 1uw4_A UPF3X; nonsense mediate 97.6 0.001 3.5E-08 46.3 10.5 77 106-182 2-86 (91)
212 1whv_A Poly(A)-specific ribonu 97.5 0.00068 2.3E-08 47.7 8.1 54 106-164 17-70 (100)
213 2dhx_A Poly (ADP-ribose) polym 97.4 0.0021 7.1E-08 45.6 10.2 69 104-180 7-80 (104)
214 3ctr_A Poly(A)-specific ribonu 97.4 0.00028 9.6E-09 49.8 5.5 54 106-164 7-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.2 0.0023 7.8E-08 46.7 8.9 73 104-182 23-95 (119)
216 3pq1_A Poly(A) RNA polymerase; 96.8 0.00048 1.6E-08 61.4 2.8 54 105-160 53-106 (464)
217 2l08_A Regulator of nonsense t 96.2 0.016 5.3E-07 40.7 6.8 78 105-182 9-94 (97)
218 2kn4_A Immunoglobulin G-bindin 95.5 0.016 5.5E-07 43.2 4.6 34 135-168 3-38 (158)
219 3p3d_A Nucleoporin 53; structu 94.7 0.043 1.5E-06 40.5 4.8 72 106-182 8-97 (132)
220 2i2y_A Fusion protein consists 94.6 0.028 9.4E-07 41.7 3.8 40 141-184 11-51 (150)
221 3d45_A Poly(A)-specific ribonu 92.7 0.28 9.7E-06 44.0 7.4 55 106-165 441-495 (507)
222 2g0c_A ATP-dependent RNA helic 75.7 7.4 0.00025 24.9 5.6 68 107-182 2-75 (76)
223 3ts2_A Protein LIN-28 homolog 60.0 2.1 7.3E-05 31.9 0.3 28 120-151 2-29 (148)
224 3fry_A Probable copper-exporti 43.6 53 0.0018 19.9 5.3 54 106-162 7-60 (73)
225 2e5p_A Protein PHF1, PHD finge 36.6 21 0.00073 22.8 2.2 20 130-153 28-47 (68)
226 2eqj_A Metal-response element- 32.9 27 0.00091 22.3 2.2 20 130-153 32-51 (66)
227 4a4j_A Pacszia, cation-transpo 32.3 78 0.0027 18.5 5.0 54 106-161 4-60 (69)
228 2m0o_A PHD finger protein 1; t 32.1 27 0.00094 22.9 2.2 20 130-153 45-64 (79)
229 2lfv_A Protein DAMX; cell divi 35.1 12 0.0004 26.2 0.0 48 117-165 34-86 (106)
230 2e5q_A PHD finger protein 19; 28.3 21 0.00071 22.5 1.1 13 141-153 33-45 (63)
231 2ki0_A DS119; beta-alpha-beta, 28.0 25 0.00086 18.9 1.2 17 104-125 4-20 (36)
232 4e8u_A Putative uncharacterize 27.4 90 0.0031 23.7 4.7 43 118-160 34-80 (172)
233 2e7g_A Putative ribosome-bindi 27.3 1.3E+02 0.0045 21.3 5.5 35 129-163 43-78 (129)
234 4hcz_A PHD finger protein 1; p 24.4 48 0.0016 20.5 2.2 20 130-153 22-41 (58)
235 3h7h_B Transcription elongatio 23.1 99 0.0034 21.3 4.0 36 131-167 40-75 (106)
236 3dxs_X Copper-transporting ATP 21.7 1.4E+02 0.0046 17.7 6.1 56 106-163 4-63 (74)
237 2k5n_A Putative cold-shock pro 20.0 61 0.0021 20.8 2.2 13 140-152 11-23 (74)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.2e-21 Score=139.40 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
..+++|||+|||.++++++|+++|++||.|.+|+|.++ .++|||||+|.+.++|++|++.|||..+.+ +.|+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g---r~l~V 93 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS---KTIKV 93 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC---EEEEE
Confidence 45689999999999999999999999999999999875 346799999999999999999999999954 69999
Q ss_pred EeccC
Q psy11527 179 EYAKT 183 (206)
Q Consensus 179 ~~ak~ 183 (206)
+||++
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99975
No 2
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.1e-20 Score=133.39 Aligned_cols=83 Identities=23% Similarity=0.387 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC--CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK--GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~--~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
....++|||+||+.++++++|+++|+.||.|.+|+|..+ .++|||||+|.+.++|++|+..|||..+.+ +.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~ 88 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG---KEVKVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT---EEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC---CeEEEE
Confidence 456789999999999999999999999999999999886 457899999999999999999999999955 699999
Q ss_pred eccCcccc
Q psy11527 180 YAKTKMAE 187 (206)
Q Consensus 180 ~ak~~~~~ 187 (206)
|++.+...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 99886433
No 3
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=7.9e-21 Score=139.73 Aligned_cols=78 Identities=18% Similarity=0.378 Sum_probs=71.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC--CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK--GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~--~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
.++|||+||+.++++++|+++|+.||.|.+|+|+.+ .++|||||+|.+.++|++|++.|||..+.+ +.|+|++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g---~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND---RKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT---EECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEECC
Confidence 468999999999999999999999999999999876 346899999999999999999999999954 699999998
Q ss_pred Ccc
Q psy11527 183 TKM 185 (206)
Q Consensus 183 ~~~ 185 (206)
.+.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 754
No 4
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.8e-20 Score=131.95 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=71.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhC--CCeecCCCCceEEE
Q psy11527 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLN--GSYLASSDRGAIRI 178 (206)
Q Consensus 101 ~~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Ln--g~~i~~~~g~~l~V 178 (206)
..+++++|||+||++++++++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|+..|+ +..+. |+.|+|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~---Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLR---NQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEET---TEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC---CcEEEE
Confidence 3556789999999999999999999999999999999864 8999999999999999999874 66784 579999
Q ss_pred EeccCccc
Q psy11527 179 EYAKTKMA 186 (206)
Q Consensus 179 ~~ak~~~~ 186 (206)
+|++.+..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99987543
No 5
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=130.08 Aligned_cols=82 Identities=20% Similarity=0.342 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC--CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK--GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~--~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
....++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG---RKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEE
Confidence 445689999999999999999999999999999999876 457899999999999999999999999955 699999
Q ss_pred eccCccc
Q psy11527 180 YAKTKMA 186 (206)
Q Consensus 180 ~ak~~~~ 186 (206)
+++.+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9988643
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=137.12 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
++.++|||+||++++++++|+++|++||.|.+|+|+.+ .++|||||+|.+.++|++|++.|||..+.+ +.|+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g---r~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG---NIIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC---eEEEE
Confidence 34689999999999999999999999999999999876 356899999999999999999999999955 69999
Q ss_pred EeccCcc
Q psy11527 179 EYAKTKM 185 (206)
Q Consensus 179 ~~ak~~~ 185 (206)
++++.+.
T Consensus 81 ~~a~~~~ 87 (110)
T 3s8s_A 81 QLDIKGQ 87 (110)
T ss_dssp EECSTTH
T ss_pred EECCCCc
Confidence 9997653
No 7
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=7.8e-20 Score=134.39 Aligned_cols=79 Identities=15% Similarity=0.268 Sum_probs=71.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceE
Q psy11527 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAI 176 (206)
Q Consensus 101 ~~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l 176 (206)
+.++.++|||+||+.++++++|+++|++||.|.+|+|..+ ..+|||||+|.+.++|++|++.|||..+.+ +.|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l 112 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT---KRL 112 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT---EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC---EEE
Confidence 3456789999999999999999999999999999999875 457899999999999999999999999954 699
Q ss_pred EEEecc
Q psy11527 177 RIEYAK 182 (206)
Q Consensus 177 ~V~~ak 182 (206)
+|+|+|
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999985
No 8
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=136.59 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=71.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCC--CeecCCCCceEEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNG--SYLASSDRGAIRIE 179 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng--~~i~~~~g~~l~V~ 179 (206)
..+.++|||+||+++++|++|+++|++||.|++|+|+++ ||||||+|.+.++|++|+..|++ ..+. |++|+|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~---Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLR---GQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEET---TEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceEC---CEEEEEE
Confidence 345689999999999999999999999999999999874 79999999999999999998874 6774 5799999
Q ss_pred eccCcccc
Q psy11527 180 YAKTKMAE 187 (206)
Q Consensus 180 ~ak~~~~~ 187 (206)
|++.+..+
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99876433
No 9
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=134.09 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=72.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 101 ~~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
..+++++|||+|||+++++++|+++|++||.|.++++++ .||||||+|.+.++|.+|++.|||..+.- +|++|+|+|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i-~Gr~i~V~~ 93 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYI-AGHPAFVNY 93 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEE-TTEEEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCcee-CCcEEEEEe
Confidence 355789999999999999999999999999999999975 57899999999999999999999986321 357999999
Q ss_pred ccCc
Q psy11527 181 AKTK 184 (206)
Q Consensus 181 ak~~ 184 (206)
++.+
T Consensus 94 S~~k 97 (100)
T 3r27_A 94 STSQ 97 (100)
T ss_dssp CSCS
T ss_pred cccc
Confidence 9875
No 10
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=1.1e-19 Score=130.76 Aligned_cols=85 Identities=20% Similarity=0.293 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC---CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG---GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~---~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
..+.++|||+||+.++++++|+++|+.||.|.+|+|..+. .+|||||+|.+.++|++|+..|||..+.+..++.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 4557899999999999999999999999999999998762 3689999999999999999999999986522269999
Q ss_pred EeccCccc
Q psy11527 179 EYAKTKMA 186 (206)
Q Consensus 179 ~~ak~~~~ 186 (206)
++++.+..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987643
No 11
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=1.1e-19 Score=132.95 Aligned_cols=85 Identities=22% Similarity=0.333 Sum_probs=75.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceE
Q psy11527 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAI 176 (206)
Q Consensus 101 ~~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l 176 (206)
+..+.++|||+||+.++++++|+++|+.||.|.+|+|..+. .+|||||+|.+.++|++|++.|||..+.+ +.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l 87 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG---RQI 87 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT---EEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---EEE
Confidence 34567899999999999999999999999999999998762 36799999999999999999999999955 699
Q ss_pred EEEeccCccccc
Q psy11527 177 RIEYAKTKMAEF 188 (206)
Q Consensus 177 ~V~~ak~~~~~~ 188 (206)
+|+|++.+....
T Consensus 88 ~V~~a~~~~~~~ 99 (115)
T 2dgo_A 88 RTNWATRKPPAP 99 (115)
T ss_dssp EEEESSCCCCCS
T ss_pred EEEEccCCCCCC
Confidence 999998865443
No 12
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=130.61 Aligned_cols=82 Identities=20% Similarity=0.180 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
....++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~ 88 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG---KPIR 88 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS---CBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC---eEEE
Confidence 445689999999999999999999999999999999875 356899999999999999999999999955 6999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|++++.+..
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999987643
No 13
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=130.28 Aligned_cols=82 Identities=17% Similarity=0.348 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC--CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK--GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~--~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..+.++|||+||+.++++++|+++|+.||.|.+|+|..+ ..++||||+|.+.++|++|+..|||..+.+ +.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~ 88 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT---KPLYVA 88 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS---SBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC---cEEEEE
Confidence 446789999999999999999999999999999999876 456899999999999999999999999955 699999
Q ss_pred eccCccc
Q psy11527 180 YAKTKMA 186 (206)
Q Consensus 180 ~ak~~~~ 186 (206)
+++.+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9987643
No 14
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.2e-19 Score=130.30 Aligned_cols=81 Identities=23% Similarity=0.451 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC-CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~-~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
..+.++|||+||+.++++++|+++|++||.|.+|+|..+ ..++||||+|.+.++|++|++.|||..+.+ +.|+|++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG---YRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT---EECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEE
Confidence 345689999999999999999999999999999999765 457899999999999999999999999955 6999999
Q ss_pred ccCcc
Q psy11527 181 AKTKM 185 (206)
Q Consensus 181 ak~~~ 185 (206)
++.+.
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98754
No 15
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=131.15 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCe--ecCCCCceEEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSY--LASSDRGAIRIE 179 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~--i~~~~g~~l~V~ 179 (206)
.+++++|||+||++++++++|+++|++||.|.+|+|++ .||||||+|.+.++|++|+..|++.. +. |+.|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~---Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIA---GQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSS---SSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceEC---CEEEEEE
Confidence 45678999999999999999999999999999999976 47899999999999999999997765 64 5699999
Q ss_pred eccCccc
Q psy11527 180 YAKTKMA 186 (206)
Q Consensus 180 ~ak~~~~ 186 (206)
|++.+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987643
No 16
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.8e-20 Score=132.22 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCe--ecCCCCceEEE
Q psy11527 102 MSPCSTLFVANLGQ-FVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSY--LASSDRGAIRI 178 (206)
Q Consensus 102 ~~~~~~LfV~nL~~-~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~--i~~~~g~~l~V 178 (206)
..++++|||+||++ +++++||+++|++||.|.+|+|++ .++||||+|.+.++|++|+..||+.. +. |++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~---Gr~l~V 86 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVF---GKPVRV 86 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEET---TEECEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceEC---CcEEEE
Confidence 44678999999999 999999999999999999999986 46899999999999999999998754 74 579999
Q ss_pred EeccCcc
Q psy11527 179 EYAKTKM 185 (206)
Q Consensus 179 ~~ak~~~ 185 (206)
++++...
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998643
No 17
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-19 Score=126.98 Aligned_cols=80 Identities=24% Similarity=0.407 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
++++|||+||+.++++++|+++|+.||.|.+|++..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~ 80 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG---RPMRVG 80 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS---SCCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEE
Confidence 4689999999999999999999999999999999876 357899999999999999999999999955 599999
Q ss_pred eccCccc
Q psy11527 180 YAKTKMA 186 (206)
Q Consensus 180 ~ak~~~~ 186 (206)
+++.+..
T Consensus 81 ~a~~~~~ 87 (95)
T 2dnz_A 81 HVTERLD 87 (95)
T ss_dssp ESSCCCC
T ss_pred EcccccC
Confidence 9987654
No 18
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2e-19 Score=128.33 Aligned_cols=80 Identities=24% Similarity=0.359 Sum_probs=72.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 101 ~~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
...+.++|||+||+.++++++|+++|++||.|.+|++.+ .+|||||+|.+.++|++|++.|||..+.+ +.|+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g---~~l~v~~ 85 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRG---KQLRVRF 85 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTT---BCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCC---ceEEEEE
Confidence 345678999999999999999999999999999999975 47899999999999999999999999955 6999999
Q ss_pred ccCcc
Q psy11527 181 AKTKM 185 (206)
Q Consensus 181 ak~~~ 185 (206)
++.+.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 98754
No 19
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=134.86 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCC--CeecCCCCceEEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNG--SYLASSDRGAIRIE 179 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng--~~i~~~~g~~l~V~ 179 (206)
.+++++|||+||++++++++|+++|++||.|++|+|+.+ +|||||+|++.++|++|+..|++ ..+. |+.|+|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~---Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLR---GQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBT---TBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceEC---CeEEEEE
Confidence 456789999999999999999999999999999999874 78999999999999999999985 5674 5799999
Q ss_pred eccCcccc
Q psy11527 180 YAKTKMAE 187 (206)
Q Consensus 180 ~ak~~~~~ 187 (206)
|++.+..+
T Consensus 103 ~a~~k~~~ 110 (119)
T 2ad9_A 103 FSNHKELK 110 (119)
T ss_dssp ECSSSSCC
T ss_pred EccCCCCC
Confidence 99876433
No 20
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=129.57 Aligned_cols=82 Identities=22% Similarity=0.348 Sum_probs=73.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceE
Q psy11527 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAI 176 (206)
Q Consensus 101 ~~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l 176 (206)
+..+.++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l 87 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH---LIL 87 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT---EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC---cEE
Confidence 3556789999999999999999999999999999999875 345799999999999999999999999955 699
Q ss_pred EEEeccCcc
Q psy11527 177 RIEYAKTKM 185 (206)
Q Consensus 177 ~V~~ak~~~ 185 (206)
+|++++.+.
T Consensus 88 ~v~~a~~~~ 96 (103)
T 2cq0_A 88 NVEWAKPST 96 (103)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 999998764
No 21
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=132.52 Aligned_cols=84 Identities=26% Similarity=0.350 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
....++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g---~~l~V 80 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG---KAIKV 80 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS---SBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC---EEEEE
Confidence 345689999999999999999999999999999999876 356899999999999999999999999955 59999
Q ss_pred EeccCccccc
Q psy11527 179 EYAKTKMAEF 188 (206)
Q Consensus 179 ~~ak~~~~~~ 188 (206)
++++.+....
T Consensus 81 ~~a~~~~~~~ 90 (116)
T 2fy1_A 81 EQAKKPSFQS 90 (116)
T ss_dssp EECCCSSCSS
T ss_pred EECCCCCCCC
Confidence 9998765433
No 22
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.4e-19 Score=127.00 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+.++++++|+++|+.||.|.+|+|+.+ ..+|||||+|.+.++|++|+. |||..+.+ +.|+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g---~~l~ 82 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG---KKVE 82 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS---CBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC---eEEE
Confidence 445689999999999999999999999999999999875 357899999999999999998 99999955 5999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|++++.+..
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 999987643
No 23
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=2.1e-19 Score=131.55 Aligned_cols=82 Identities=17% Similarity=0.302 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
.++.++|||+||+.++++++|+++|+.||.|.+|+|..+. .+|||||+|.+.++|++|+..|||..+.+ +.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~ 98 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM---KRLK 98 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT---EECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC---EEEE
Confidence 4456899999999999999999999999999999998763 35799999999999999999999999954 6999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|++++.+..
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999987643
No 24
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=129.55 Aligned_cols=82 Identities=23% Similarity=0.317 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 85 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---RTIR 85 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT---EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---cEEE
Confidence 345789999999999999999999999999999999775 457899999999999999999999999954 6999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|++++.+..
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987643
No 25
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=5.7e-19 Score=133.31 Aligned_cols=84 Identities=17% Similarity=0.271 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
....++|||+||+.++++++|+++|+.||.|++|+|..+. .+|||||+|.+.++|++|+..|||..+.+ +.|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~ 115 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN---KRLK 115 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS---CEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---eEEE
Confidence 4557899999999999999999999999999999998763 36899999999999999999999999965 5999
Q ss_pred EEeccCccccc
Q psy11527 178 IEYAKTKMAEF 188 (206)
Q Consensus 178 V~~ak~~~~~~ 188 (206)
|++++.+....
T Consensus 116 v~~a~~~~~~~ 126 (139)
T 1u6f_A 116 VALAASGHQRP 126 (139)
T ss_dssp EEESSCCCCCC
T ss_pred EEECCCCCCCC
Confidence 99998865443
No 26
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-19 Score=125.81 Aligned_cols=78 Identities=23% Similarity=0.320 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
.++.++|||+||+.++++++|+++|+.||.|.++++..+ ..+|||||+|.+.++|++|++.|||..+.+ +.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 89 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG---RVIK 89 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT---EEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC---cEEE
Confidence 445689999999999999999999999999999999875 356899999999999999999999999955 6999
Q ss_pred EEecc
Q psy11527 178 IEYAK 182 (206)
Q Consensus 178 V~~ak 182 (206)
|+|+|
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99986
No 27
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=128.23 Aligned_cols=79 Identities=25% Similarity=0.440 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEE-EEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRV-RMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v-~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
++++|||+||+.++++++|+++|+.||.|.++ +|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN---RPITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT---EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC---EEEEE
Confidence 46899999999999999999999999999999 98875 357899999999999999999999999954 69999
Q ss_pred EeccCcc
Q psy11527 179 EYAKTKM 185 (206)
Q Consensus 179 ~~ak~~~ 185 (206)
++++.+.
T Consensus 81 ~~a~~~~ 87 (96)
T 1x5t_A 81 SYAFKKD 87 (96)
T ss_dssp EESCCCC
T ss_pred EEecccC
Confidence 9998764
No 28
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=129.12 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 86 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG---RELR 86 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT---BCCE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC---cEEE
Confidence 445689999999999999999999999999999999875 347899999999999999999999999955 6999
Q ss_pred EEeccCcc
Q psy11527 178 IEYAKTKM 185 (206)
Q Consensus 178 V~~ak~~~ 185 (206)
|++++.+.
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 99998754
No 29
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=131.88 Aligned_cols=80 Identities=20% Similarity=0.346 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC--CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK--GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~--~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
....++|||+||+.++++++|+++|++||.|.+|++..+ +.+|||||+|.+.++|++|+..|||..+.+ +.|+|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~ 102 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG---RKIEVN 102 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEE
Confidence 445689999999999999999999999999999999876 457899999999999999999999999955 699999
Q ss_pred eccCc
Q psy11527 180 YAKTK 184 (206)
Q Consensus 180 ~ak~~ 184 (206)
+++.+
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99875
No 30
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.1e-19 Score=128.09 Aligned_cols=81 Identities=21% Similarity=0.402 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC-----CCCCEEEEEeCCHHHHHHHHHHh-CCCeecCCCCce
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-----GGSPVAFIEYTDVNFAIQAMSNL-NGSYLASSDRGA 175 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~-----~~~g~aFV~f~~~~~A~~Al~~L-ng~~i~~~~g~~ 175 (206)
....++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..| ||..+.+ +.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g---~~ 88 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG---RR 88 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS---CB
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC---CE
Confidence 455789999999999999999999999999999999765 24789999999999999999999 9999965 59
Q ss_pred EEEEeccCcc
Q psy11527 176 IRIEYAKTKM 185 (206)
Q Consensus 176 l~V~~ak~~~ 185 (206)
|+|++++.+.
T Consensus 89 l~v~~a~~~~ 98 (107)
T 2cph_A 89 LVLEWADSEV 98 (107)
T ss_dssp CEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999998764
No 31
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.81 E-value=1.2e-19 Score=141.48 Aligned_cols=81 Identities=22% Similarity=0.285 Sum_probs=73.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccCc
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~~ 184 (206)
..+|||+||++.+++++|+++|++||.|++|+|..+..++||||+|.+.++|++|++.|||..|.+ +++.|+|+|++.+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g-~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS-SCSCEEEEECSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC-CCcEEEEEEecCC
Confidence 467999999999999999999999999999999876667899999999999999999999999976 3689999999986
Q ss_pred cc
Q psy11527 185 MA 186 (206)
Q Consensus 185 ~~ 186 (206)
..
T Consensus 125 ~l 126 (164)
T 1sjr_A 125 SL 126 (164)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 32
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6.1e-19 Score=128.04 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCC--CCceEEEEe
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASS--DRGAIRIEY 180 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~--~g~~l~V~~ 180 (206)
...++|||+||+.++++++|+++|+.||.|.+|+|..+ |||||+|.+.++|++||..|||..+.+. +++.|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 34689999999999999999999999999999999876 8999999999999999999999999650 015999999
Q ss_pred ccCcccc
Q psy11527 181 AKTKMAE 187 (206)
Q Consensus 181 ak~~~~~ 187 (206)
++.+...
T Consensus 90 a~~~~~~ 96 (108)
T 1x4c_A 90 DGPRSPS 96 (108)
T ss_dssp SSCCSCC
T ss_pred CCCCCCC
Confidence 9886543
No 33
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=126.04 Aligned_cols=79 Identities=22% Similarity=0.359 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
.+.++|||+||+.++++++|+++|+.||.|.++++..+ ..+|||||+|.+.++|++|++.|||..+.+ +.|+|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG---RQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---eEEEE
Confidence 35689999999999999999999999999999999875 246899999999999999999999999955 69999
Q ss_pred EeccCc
Q psy11527 179 EYAKTK 184 (206)
Q Consensus 179 ~~ak~~ 184 (206)
++++.+
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 999875
No 34
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=126.89 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
.+++++|||+||+.++++++|+++|+.||.|.+|++..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 88 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG---RRIR 88 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT---EEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC---EEEE
Confidence 455789999999999999999999999999999999875 345799999999999999999999999954 6999
Q ss_pred EEeccC
Q psy11527 178 IEYAKT 183 (206)
Q Consensus 178 V~~ak~ 183 (206)
|++++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999875
No 35
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=7.3e-19 Score=128.29 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC---CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG---GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~---~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
..++++|||+||+.++++++|+++|+.||.|.+|+|..+. .+|||||+|.+.++|++|+..|||..+.+ +.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v 88 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD---RPMHV 88 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC---CEEEE
Confidence 4567899999999999999999999999999999998762 35799999999999999999999999954 69999
Q ss_pred EeccCcc
Q psy11527 179 EYAKTKM 185 (206)
Q Consensus 179 ~~ak~~~ 185 (206)
++++...
T Consensus 89 ~~a~~~~ 95 (114)
T 2do0_A 89 KMDERAL 95 (114)
T ss_dssp EECSCCC
T ss_pred EEcccCC
Confidence 9997643
No 36
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.5e-19 Score=125.04 Aligned_cols=78 Identities=31% Similarity=0.410 Sum_probs=70.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhcCC--CCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSF--PGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 101 ~~~~~~~LfV~nL~~~~te~~L~~~F~~~--G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...+.++|||+||+.++++++|+++|+.| |.|.++++. ++||||+|.+.++|++|+..|||..+.+ +.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v 83 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDG---SPIEV 83 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETT---EEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCC---cEEEE
Confidence 35567899999999999999999999999 999999875 5699999999999999999999999954 69999
Q ss_pred EeccCcc
Q psy11527 179 EYAKTKM 185 (206)
Q Consensus 179 ~~ak~~~ 185 (206)
++++.+.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9998764
No 37
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.9e-19 Score=128.10 Aligned_cols=82 Identities=18% Similarity=0.305 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhC------CCeecCC
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLN------GSYLASS 171 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Ln------g~~i~~~ 171 (206)
..++++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..|| |..+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g- 90 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG- 90 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS-
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC-
Confidence 445789999999999999999999999999999999876 357899999999999999999999 999955
Q ss_pred CCceEEEEeccCccc
Q psy11527 172 DRGAIRIEYAKTKMA 186 (206)
Q Consensus 172 ~g~~l~V~~ak~~~~ 186 (206)
+.|+|++++.+..
T Consensus 91 --~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 --RQLKVDLAVTRDE 103 (111)
T ss_dssp --CEEEEECCCCCCC
T ss_pred --EEEEEEECCCCcc
Confidence 6999999987643
No 38
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=128.01 Aligned_cols=82 Identities=23% Similarity=0.364 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|++.|||..+.+ +.|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 85 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG---RQIR 85 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS---CCCE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC---eEEE
Confidence 445689999999999999999999999999999999875 357899999999999999999999999955 6999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|++++.+..
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 999987643
No 39
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.2e-19 Score=125.94 Aligned_cols=82 Identities=20% Similarity=0.325 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~ 81 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG---RMLH 81 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS---CEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC---cEEE
Confidence 345689999999999999999999999999999999875 356899999999999999999999999965 5999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|++++.+..
T Consensus 82 V~~a~~~~~ 90 (99)
T 1whw_A 82 VLPSTIKKE 90 (99)
T ss_dssp EEECCCCST
T ss_pred EEEcCCCcc
Confidence 999988643
No 40
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=5.3e-19 Score=127.11 Aligned_cols=80 Identities=31% Similarity=0.476 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
..+.++|||+||+.++++++|+++|+.||.|.+|++.+ +||||+|.+.++|++|+..|||..+.+ +.|+|+++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a 80 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLEG---ENIEIVFA 80 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEETT---EEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccCC---CEEEEEEc
Confidence 34568999999999999999999999999999999864 599999999999999999999999955 69999999
Q ss_pred cCccccc
Q psy11527 182 KTKMAEF 188 (206)
Q Consensus 182 k~~~~~~ 188 (206)
+.+....
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 8865443
No 41
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=127.28 Aligned_cols=81 Identities=21% Similarity=0.360 Sum_probs=72.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC-------CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCce
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG-------GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGA 175 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~-------~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~ 175 (206)
.+.++|||+||+.++++++|+++|+.||.|.+|+|..+. .+|||||+|.+.++|++|+..|||..+.+ +.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG---HK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT---EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC---eE
Confidence 356899999999999999999999999999999998652 35799999999999999999999999955 69
Q ss_pred EEEEeccCccc
Q psy11527 176 IRIEYAKTKMA 186 (206)
Q Consensus 176 l~V~~ak~~~~ 186 (206)
|+|++++.+..
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 99999987643
No 42
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-20 Score=130.58 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=68.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCC-CeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHh-CCCeecCCCCceEEE
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFP-GFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNL-NGSYLASSDRGAIRI 178 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G-~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~L-ng~~i~~~~g~~l~V 178 (206)
+++|||+|||.+++|++|+++|+.|| .|.+|+|+++ .++|||||+|.+.++|++|++.+ ++..+. |+.|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~---gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL---GQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET---TEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC---CEEEEE
Confidence 36999999999999999999999999 8999999875 46799999999999999999887 456674 579999
Q ss_pred EeccCcc
Q psy11527 179 EYAKTKM 185 (206)
Q Consensus 179 ~~ak~~~ 185 (206)
+|++++.
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9998753
No 43
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.1e-19 Score=125.36 Aligned_cols=81 Identities=22% Similarity=0.391 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
.++.++|||+||+.++++++|+++|++||.|.+|++..+ ++||||+|.+.++|++|+..|||..+.+ .++.|+|+|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~-~g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGG-PDRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSS-SSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCC-CCcEEEEEEC
Confidence 345689999999999999999999999999999999764 7899999999999999999999999962 1569999999
Q ss_pred cCcc
Q psy11527 182 KTKM 185 (206)
Q Consensus 182 k~~~ 185 (206)
+.+.
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 44
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=3.3e-19 Score=128.51 Aligned_cols=84 Identities=18% Similarity=0.283 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+.++++++|+++|++||.|.+|+|..+ ..+|||||+|.+.++|++|+..|||..+...+++.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 445689999999999999999999999999999999875 3578999999999999999999999886322357999
Q ss_pred EEeccCcc
Q psy11527 178 IEYAKTKM 185 (206)
Q Consensus 178 V~~ak~~~ 185 (206)
|++++.+.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998754
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=2e-19 Score=124.44 Aligned_cols=77 Identities=25% Similarity=0.357 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
.+.++|||+||+.++++++|+++|++||.|.++++..+ ..+|||||+|.+.++|++|++.|||..+.+ +.|+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v 81 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---RTIRV 81 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT---EECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC---cEEEE
Confidence 45689999999999999999999999999999999765 357899999999999999999999999954 69999
Q ss_pred Eecc
Q psy11527 179 EYAK 182 (206)
Q Consensus 179 ~~ak 182 (206)
+++|
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9985
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=3.6e-19 Score=126.32 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=72.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
+++|||+||+.++++++|+++|+.||.|.++++..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+|++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS---RFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEE
Confidence 589999999999999999999999999999999876 347899999999999999999999999955 6999999
Q ss_pred ccCccc
Q psy11527 181 AKTKMA 186 (206)
Q Consensus 181 ak~~~~ 186 (206)
++.+..
T Consensus 79 a~~~~~ 84 (96)
T 2x1f_A 79 SSNSDI 84 (96)
T ss_dssp CSCSSG
T ss_pred cCCCCC
Confidence 988643
No 47
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6e-19 Score=123.70 Aligned_cols=78 Identities=27% Similarity=0.334 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
..+.++|||+||+.++++++|+++|++||.|.++++. ++||||+|.+.++|++|+..|||..+.+ +.|+|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~a 77 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHG---VNINVEAS 77 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSS---CBCEEECS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCC---cEEEEEEC
Confidence 3456899999999999999999999999999999997 5799999999999999999999999955 59999999
Q ss_pred cCccc
Q psy11527 182 KTKMA 186 (206)
Q Consensus 182 k~~~~ 186 (206)
+.+..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 48
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=129.48 Aligned_cols=80 Identities=14% Similarity=0.329 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
....++|||+||+.++++++|+++|+.||.|.+|+|..+ +|||||+|.+.++|++|+..|||..+.+ +.|+|+|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEG---HVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETT---EECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECC---cEEEEEec
Confidence 345689999999999999999999999999999999875 7899999999999999999999999955 69999999
Q ss_pred cCccc
Q psy11527 182 KTKMA 186 (206)
Q Consensus 182 k~~~~ 186 (206)
+.+..
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 88653
No 49
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=128.63 Aligned_cols=77 Identities=17% Similarity=0.304 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCC--eeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCC----eecCCCC
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPG--FSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGS----YLASSDR 173 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~--v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~----~i~~~~g 173 (206)
.-.||||+||++++|+++|+++|++||. |.+|++.+| .++|||||+|.+.++|++|++.|||. .| +|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i---~G 84 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI---DG 84 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE---TT
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE---CC
Confidence 3479999999999999999999999995 678998876 46789999999999999999999997 36 46
Q ss_pred ceEEEEeccC
Q psy11527 174 GAIRIEYAKT 183 (206)
Q Consensus 174 ~~l~V~~ak~ 183 (206)
|.|+|+||+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 7999999975
No 50
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6.2e-19 Score=125.88 Aligned_cols=81 Identities=17% Similarity=0.305 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC---CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG---GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~---~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
..+.++|||+||+.++++++|+++|+.||.|.+|+|..+. .+|||||+|.+.++|++|+..|||..+.+ +.|+|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v 90 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE---NIIKV 90 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS---CEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC---EEEEE
Confidence 4456899999999999999999999999999999998753 45899999999999999999999999955 69999
Q ss_pred EeccCcc
Q psy11527 179 EYAKTKM 185 (206)
Q Consensus 179 ~~ak~~~ 185 (206)
++++.+.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9998754
No 51
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=3.4e-19 Score=122.75 Aligned_cols=76 Identities=24% Similarity=0.425 Sum_probs=69.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
.+|||+|||.++++++|+++|+.||.|.++++..+ .++|||||+|.+.++|++|+..|||..+. |+.|+|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN---GRPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET---TEECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC---CcEEEEEec
Confidence 68999999999999999999999999999999876 23689999999999999999999999995 469999999
Q ss_pred cCc
Q psy11527 182 KTK 184 (206)
Q Consensus 182 k~~ 184 (206)
+.+
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 875
No 52
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=3.6e-19 Score=129.63 Aligned_cols=77 Identities=26% Similarity=0.465 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
....++|||+||+.++++++|+++|++||.|.+|++. +|||||+|.+.++|++|+..|||..+. |+.|+|+++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFA---NQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEET---TEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEEe
Confidence 4456899999999999999999999999999999997 689999999999999999999999995 469999999
Q ss_pred cCcc
Q psy11527 182 KTKM 185 (206)
Q Consensus 182 k~~~ 185 (206)
+.+.
T Consensus 101 ~~~~ 104 (108)
T 2jvo_A 101 KLPA 104 (108)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8754
No 53
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=126.37 Aligned_cols=80 Identities=24% Similarity=0.372 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
....++|||+||+.++++++|+++|+.||.|. ++++.+..+|||||+|.+.++|++|+..|||..+.+ +.|+|+++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT---DTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS---SCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEc
Confidence 34568999999999999999999999999997 677777889999999999999999999999999955 69999999
Q ss_pred cCcc
Q psy11527 182 KTKM 185 (206)
Q Consensus 182 k~~~ 185 (206)
+.+.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 54
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=123.64 Aligned_cols=77 Identities=16% Similarity=0.309 Sum_probs=71.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC-----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG-----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~-----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
.++|||+||+.++++++|+++|+.||.|.++++..+. .+|||||+|.+.++|++|+..|||..+.+ +.|+|+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 80 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG---QEITAT 80 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC---eEEEEE
Confidence 4799999999999999999999999999999997763 68899999999999999999999999954 699999
Q ss_pred eccCc
Q psy11527 180 YAKTK 184 (206)
Q Consensus 180 ~ak~~ 184 (206)
+++..
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99764
No 55
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=5.3e-19 Score=126.21 Aligned_cols=77 Identities=17% Similarity=0.277 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 102 MSPCSTLFVANLGQ-FVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 102 ~~~~~~LfV~nL~~-~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
.+++++|||+||+. ++++++|+++|+.||.|.++++. +|||||+|.+.++|++|+..|||..+.+ +.|+|++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFG---KKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETT---EECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEe
Confidence 44678999999998 99999999999999999999983 6899999999999999999999999954 6999999
Q ss_pred ccCcc
Q psy11527 181 AKTKM 185 (206)
Q Consensus 181 ak~~~ 185 (206)
++.+.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98753
No 56
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=126.36 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHH----HHhcCCCCeeEEEEecC-CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIK----DIFGSFPGFSRVRMHNK-GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~----~~F~~~G~v~~v~l~~~-~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+++|||+||+.++++++|+ ++|++||.|.+|+|..+ ..++||||+|.+.++|++|+..|||..+. |+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~---gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG---SKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC---CeEEE
Confidence 346899999999999999999 99999999999999876 23889999999999999999999999995 46999
Q ss_pred EEeccCcc
Q psy11527 178 IEYAKTKM 185 (206)
Q Consensus 178 V~~ak~~~ 185 (206)
|++++.+.
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99998753
No 57
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=3.6e-19 Score=125.00 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC--CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK--GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~--~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..++++|||+||+.++++++|+++|++||.|.+++|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g---~~l~v~ 81 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG---REIDVR 81 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT---BCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEE
Confidence 345689999999999999999999999999999999875 356899999999999999999999999955 699999
Q ss_pred eccCcc
Q psy11527 180 YAKTKM 185 (206)
Q Consensus 180 ~ak~~~ 185 (206)
+++...
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 998764
No 58
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=3.1e-19 Score=125.19 Aligned_cols=74 Identities=20% Similarity=0.158 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
.+.-|||+||++.++|++|+++|.+||+|+++++.. ++|||||+|.+.++|++|++.|||..+.+ |.|+|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g---r~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLAN---TTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETT---EEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECC---cEEEEEECC
Confidence 357899999999999999999999999999999975 78999999999999999999999999955 699999994
No 59
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=1.1e-18 Score=125.40 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+.++++++|+++|+.|| |.+|+|+.+. .+|||||+|.+.++|++|+ .|||..+.+ +.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~ 86 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD---RSLR 86 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT---EECE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC---eEEE
Confidence 34568999999999999999999999996 9999998763 3679999999999999999 999999954 6999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|++++.+..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999987643
No 60
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=1.6e-19 Score=132.51 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCC-CeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFP-GFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G-~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
.+++|||+||++++++++|+++|+.|| .|..+++..+.++|||||+|.+.++|++|+..|||..+. |+.|+|++++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~---Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR---GSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET---TEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEECC
Confidence 457999999999999999999999999 999999976678899999999999999999999999995 5799999997
Q ss_pred Ccc
Q psy11527 183 TKM 185 (206)
Q Consensus 183 ~~~ 185 (206)
...
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 653
No 61
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8e-19 Score=127.99 Aligned_cols=82 Identities=18% Similarity=0.236 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCee--------EEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFS--------RVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLA 169 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~--------~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~ 169 (206)
..+.++|||+||+.++++++|+++|+.||.|. .|+|..+ ..+|||||+|.+.++|++|+..|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999999 6888775 34689999999999999999999999995
Q ss_pred CCCCceEEEEeccCccc
Q psy11527 170 SSDRGAIRIEYAKTKMA 186 (206)
Q Consensus 170 ~~~g~~l~V~~ak~~~~ 186 (206)
+ +.|+|++++.+..
T Consensus 92 g---~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 G---SKLKVSLARKKPP 105 (113)
T ss_dssp T---EECEEECSSCCCC
T ss_pred C---CEEEEEECCCCCC
Confidence 4 6999999987643
No 62
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-18 Score=126.77 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
....++|||+||+.++++++|+++|+.||.|++|+|..+ ..+|||||+|.+.++|++|+..||+ .+. ++.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~---g~~l~ 89 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID---GRKAN 89 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC---CEEEE
Confidence 445789999999999999999999999999999999875 3578999999999999999999998 784 46999
Q ss_pred EEeccCcc
Q psy11527 178 IEYAKTKM 185 (206)
Q Consensus 178 V~~ak~~~ 185 (206)
|++++.+.
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99998654
No 63
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=134.30 Aligned_cols=83 Identities=13% Similarity=0.248 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH----HHhcCCCCeeEEEEecC-CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIK----DIFGSFPGFSRVRMHNK-GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAI 176 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~----~~F~~~G~v~~v~l~~~-~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l 176 (206)
..++++|||+||++++++++|+ ++|++||.|.+|.+..+ .++|||||+|.+.++|++|+..|||..+.+ +.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g---r~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG---NPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT---SCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC---CEE
Confidence 3457899999999999999876 69999999999988654 578999999999999999999999999965 599
Q ss_pred EEEeccCcccc
Q psy11527 177 RIEYAKTKMAE 187 (206)
Q Consensus 177 ~V~~ak~~~~~ 187 (206)
+|+|++.+...
T Consensus 103 ~V~~a~~~~~~ 113 (127)
T 2a3j_A 103 VITFSETPQSQ 113 (127)
T ss_dssp EEEECCCCCHH
T ss_pred EEEEccCcchh
Confidence 99999886543
No 64
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=122.19 Aligned_cols=76 Identities=18% Similarity=0.355 Sum_probs=69.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHh-CCCeecCCCCceEEEEe
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNL-NGSYLASSDRGAIRIEY 180 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~L-ng~~i~~~~g~~l~V~~ 180 (206)
....++|||+||+.++++++|+++|++||.|.++++.+ ++|||||+|.+.++|++|+..| ||..+.+ +.|+|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g---~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNG---RRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETT---EECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECC---CEEEEEe
Confidence 34568999999999999999999999999999999986 4789999999999999999989 9999955 6999999
Q ss_pred cc
Q psy11527 181 AK 182 (206)
Q Consensus 181 ak 182 (206)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 65
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.79 E-value=1e-18 Score=127.04 Aligned_cols=77 Identities=25% Similarity=0.378 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCC-CcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 103 SPCSTLFVANLGQF-VSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 103 ~~~~~LfV~nL~~~-~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
..+++|||+||+.+ +++++|+++|++||.|.+|++ .++||||+|.+.++|++|+..|||..+.+ +.|+|+++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAG---QTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETT---EECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEC
Confidence 34689999999999 999999999999999999998 46899999999999999999999999955 69999999
Q ss_pred cCccc
Q psy11527 182 KTKMA 186 (206)
Q Consensus 182 k~~~~ 186 (206)
+....
T Consensus 98 ~~~~~ 102 (110)
T 1wf1_A 98 GEPKP 102 (110)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 86543
No 66
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7e-19 Score=129.23 Aligned_cols=80 Identities=10% Similarity=0.150 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCC--eecCCCCceEEE
Q psy11527 102 MSPCSTLFVANLGQF-VSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGS--YLASSDRGAIRI 178 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~-~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~--~i~~~~g~~l~V 178 (206)
..++++|||+||+++ +++++|+++|++||.|.+|+|++ ++|||||+|.+.++|++|+..||+. .+. ||.|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~---Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQ---GRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSS---SSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceEC---CEEEEE
Confidence 456789999999998 99999999999999999999975 6799999999999999999988754 464 579999
Q ss_pred EeccCccc
Q psy11527 179 EYAKTKMA 186 (206)
Q Consensus 179 ~~ak~~~~ 186 (206)
+|++.+..
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99987543
No 67
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=122.49 Aligned_cols=78 Identities=14% Similarity=0.307 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
....++|||+||+.++++++|+++|+.||.|.+|++.+ +||||+|.+.++|++|+..|||..+.+ +.|+|+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQG---KRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEETT---EEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEEEc
Confidence 44568999999999999999999999999999999974 399999999999999999999999955 69999999
Q ss_pred cCccc
Q psy11527 182 KTKMA 186 (206)
Q Consensus 182 k~~~~ 186 (206)
+.+..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 87643
No 68
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=124.83 Aligned_cols=79 Identities=29% Similarity=0.429 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC-----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG-----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~-----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
.+.++|||+||+.++++++|+++|+.|| |.+|+|..+. .+|||||+|.+.++|++|| .|||..+.+ +.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---KRIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT---EECE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC---cEEE
Confidence 3458999999999999999999999999 9999998762 3689999999999999999 999999954 6999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|++++.+..
T Consensus 88 V~~a~~~~~ 96 (104)
T 1wi8_A 88 VDVADQAQD 96 (104)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999987643
No 69
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.6e-19 Score=127.33 Aligned_cols=76 Identities=17% Similarity=0.307 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
.+++|||+||+.++++++|+++|+.||.|.++++. .++|||||+|.+.++|++|+..|||..+.+ +.|+|+|++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQG---RNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETT---EECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEeccC
Confidence 45899999999999999999999999999999997 468899999999999999999999999954 6999999876
Q ss_pred c
Q psy11527 184 K 184 (206)
Q Consensus 184 ~ 184 (206)
+
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 70
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.8e-18 Score=121.96 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
..+.++|||+|| ++++++|+++|++||.|.+|+|. ..+|||||+|.+.++|++|+..|||..+. |+.|+|+++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVE---SVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEET---TEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEEEC
Confidence 445789999996 89999999999999999999995 57889999999999999999999999995 469999999
Q ss_pred cCccc
Q psy11527 182 KTKMA 186 (206)
Q Consensus 182 k~~~~ 186 (206)
+.+..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87643
No 71
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=5.8e-19 Score=132.55 Aligned_cols=81 Identities=23% Similarity=0.395 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
.++.++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..|||..|.+ +.|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g---~~l~ 119 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG---RRIR 119 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS---SCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC---EEEE
Confidence 445789999999999999999999999999999999875 467899999999999999999999999955 6999
Q ss_pred EEeccCcc
Q psy11527 178 IEYAKTKM 185 (206)
Q Consensus 178 V~~ak~~~ 185 (206)
|+|++.+.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998753
No 72
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=5.3e-19 Score=125.64 Aligned_cols=78 Identities=18% Similarity=0.327 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 102 MSPCSTLFVANLGQ-FVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 102 ~~~~~~LfV~nL~~-~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
.++.++|||+||+. ++++++|+++|++||.|.++++. +|||||+|.+.++|++|+..|||..+.+ +.|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFG---KKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBT---TTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCC---cEEEEEE
Confidence 45678999999998 99999999999999999999985 5799999999999999999999999965 5999999
Q ss_pred ccCccc
Q psy11527 181 AKTKMA 186 (206)
Q Consensus 181 ak~~~~ 186 (206)
++.+..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987644
No 73
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.7e-19 Score=126.17 Aligned_cols=81 Identities=19% Similarity=0.360 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCee-EEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCce-
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFS-RVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGA- 175 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~-~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~- 175 (206)
..+.++|||+||+.++++++|+++|++||.|. +++|..+ ..+|||||+|.+.++|++|++.|||..+.+ +.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~~ 82 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG---ATP 82 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS---CSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC---CCc
Confidence 34568999999999999999999999999999 9999876 345899999999999999999999999966 47
Q ss_pred ---EEEEeccCcc
Q psy11527 176 ---IRIEYAKTKM 185 (206)
Q Consensus 176 ---l~V~~ak~~~ 185 (206)
|+|+|++...
T Consensus 83 ~~~l~v~~a~~~~ 95 (99)
T 2div_A 83 AKRFKLNYATYSG 95 (99)
T ss_dssp CEECCEEETTCCS
T ss_pred ceeEEEeecCCCC
Confidence 9999998753
No 74
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=6.2e-19 Score=128.01 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..++++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~ 99 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG---QTIQ 99 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT---EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC---cEEE
Confidence 345689999999999999999999999999999999865 346899999999999999999999999954 6999
Q ss_pred EEeccCcc
Q psy11527 178 IEYAKTKM 185 (206)
Q Consensus 178 V~~ak~~~ 185 (206)
|++++.+.
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99998754
No 75
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=4.6e-19 Score=125.19 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
....++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V 89 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG---RPINV 89 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT---EECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC---CEEEE
Confidence 345689999999999999999999999999999999876 336799999999999999999999999955 69999
Q ss_pred EeccC
Q psy11527 179 EYAKT 183 (206)
Q Consensus 179 ~~ak~ 183 (206)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99874
No 76
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=4.9e-19 Score=126.64 Aligned_cols=77 Identities=22% Similarity=0.377 Sum_probs=71.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccCcc
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTKM 185 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~~~ 185 (206)
++|||+||+.++++++|+++|++||.|.+|++..+ .+|||||+|.+.++|++|+..|||..+.+ +.|+|++++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICG---SRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSS---CCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECC---cEEEEEEccCCC
Confidence 48999999999999999999999999999999886 78999999999999999999999999955 599999998865
Q ss_pred c
Q psy11527 186 A 186 (206)
Q Consensus 186 ~ 186 (206)
.
T Consensus 77 ~ 77 (101)
T 2hvz_A 77 R 77 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 77
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=127.31 Aligned_cols=80 Identities=23% Similarity=0.382 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHH---HHhcCCCCeeEEEEecCC-------CCCEEEEEeCCHHHHHHHHHHhCCCeecCCC
Q psy11527 103 SPCSTLFVANLGQFVSEQEIK---DIFGSFPGFSRVRMHNKG-------GSPVAFIEYTDVNFAIQAMSNLNGSYLASSD 172 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~---~~F~~~G~v~~v~l~~~~-------~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~ 172 (206)
...++|||+|||.++++++|+ ++|++||.|.+|+|..+. .+|||||+|.+.++|++|+..|||..+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~--- 89 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD--- 89 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET---
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC---
Confidence 346799999999999999999 999999999999998752 3479999999999999999999999995
Q ss_pred CceEEEEeccCcc
Q psy11527 173 RGAIRIEYAKTKM 185 (206)
Q Consensus 173 g~~l~V~~ak~~~ 185 (206)
|+.|+|++++.+.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 5699999998865
No 78
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=124.38 Aligned_cols=77 Identities=21% Similarity=0.323 Sum_probs=69.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeE--------EEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecC
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSR--------VRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLAS 170 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~--------v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~ 170 (206)
...++|||+||+.++++++|+++|+.||.|.+ +++..+ ..+|||||+|.+.++|++|++.|||..+.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34689999999999999999999999999999 999876 346899999999999999999999999955
Q ss_pred CCCceEEEEecc
Q psy11527 171 SDRGAIRIEYAK 182 (206)
Q Consensus 171 ~~g~~l~V~~ak 182 (206)
+.|+|++++
T Consensus 91 ---~~l~V~~A~ 99 (99)
T 2la6_A 91 ---NPIKVSFAT 99 (99)
T ss_dssp ---SBCEEEECC
T ss_pred ---cEEEEEecC
Confidence 699999985
No 79
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=7e-19 Score=130.69 Aligned_cols=83 Identities=20% Similarity=0.293 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..++++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..|||..|.+ +.|+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~ 95 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG---QPIS 95 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS---SBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC---eEEE
Confidence 345689999999999999999999999999999999865 347899999999999999999999999955 5999
Q ss_pred EEeccCcccc
Q psy11527 178 IEYAKTKMAE 187 (206)
Q Consensus 178 V~~ak~~~~~ 187 (206)
|+|++.+...
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999876443
No 80
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=1.1e-18 Score=131.22 Aligned_cols=79 Identities=23% Similarity=0.321 Sum_probs=71.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCE-EEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPV-AFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~-aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
.-.|||+||++.+++++|+++|++||.|.+|+|..+ .+|| |||+|.+.++|++|++.|||..|.+ +++.|+|+|++.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g-~~~~LrI~~ak~ 105 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-TTEEEEEEEESCHHHHHHHHHHHTTCEEET-TEEEEEEEECSC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-CCCcEEEEEECCHHHHHHHHHHcCCCeecC-CCcEEEEEecCC
Confidence 356789999999999999999999999999998864 5677 9999999999999999999999987 357999999998
Q ss_pred cc
Q psy11527 184 KM 185 (206)
Q Consensus 184 ~~ 185 (206)
+.
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 81
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.9e-19 Score=126.76 Aligned_cols=83 Identities=22% Similarity=0.324 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcC-CCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCe-ecCCCCceE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGS-FPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSY-LASSDRGAI 176 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~-~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~-i~~~~g~~l 176 (206)
..+.++|||+||+.++++++|+++|+. ||.|.+|+|..+ .++|||||+|.+.++|++|+..|||.. +.+ +.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g---~~l 82 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS---KPV 82 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS---SCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC---EeE
Confidence 445689999999999999999999999 999999999876 346899999999999999999999999 854 699
Q ss_pred EEEeccCcccc
Q psy11527 177 RIEYAKTKMAE 187 (206)
Q Consensus 177 ~V~~ak~~~~~ 187 (206)
+|++++.+...
T Consensus 83 ~v~~a~~~~~~ 93 (104)
T 2dhg_A 83 RLSVAIPKASR 93 (104)
T ss_dssp CCCBCCCCCSC
T ss_pred EEEEccCCCcC
Confidence 99999876433
No 82
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=2.9e-19 Score=132.46 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
+.++|||+||+.++++++|+++|+.||.|.+|+|..+ .++|||||+|.+.++|++|+ .|||..+.+ +.|+|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~V~ 110 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG---RTIKVL 110 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC---eEEEEE
Confidence 4589999999999999999999999999999999865 34689999999999999999 899999955 699999
Q ss_pred eccCccc
Q psy11527 180 YAKTKMA 186 (206)
Q Consensus 180 ~ak~~~~ 186 (206)
+++....
T Consensus 111 ~a~~~~~ 117 (124)
T 2jwn_A 111 PKRTNMP 117 (124)
T ss_dssp ESSCCCS
T ss_pred ECCCCCC
Confidence 9987543
No 83
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=124.04 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=68.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
..+.++|||+||+.++++++|+++|+.||.| +++.+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v 85 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG---RAIRL 85 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT---EEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC---eEEEE
Confidence 4457899999999999999999999999987 34333 567899999999999999999999999955 69999
Q ss_pred EeccCcc
Q psy11527 179 EYAKTKM 185 (206)
Q Consensus 179 ~~ak~~~ 185 (206)
++++.+.
T Consensus 86 ~~a~~~~ 92 (101)
T 2fc9_A 86 ELQGPRG 92 (101)
T ss_dssp EECSSCC
T ss_pred EEcCCCC
Confidence 9998764
No 84
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=125.83 Aligned_cols=81 Identities=21% Similarity=0.356 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
.++.++|||+||+..+++++|+++|+.||.|.+|++..+ ..+|||||+|.+.++|++|++.|||..+.+ +.|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g---~~l~ 99 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG---RPMK 99 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS---SCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---EEEE
Confidence 345689999999999999999999999999999999875 236899999999999999999999999955 6999
Q ss_pred EEeccCcc
Q psy11527 178 IEYAKTKM 185 (206)
Q Consensus 178 V~~ak~~~ 185 (206)
|++++.+.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998753
No 85
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.4e-19 Score=125.27 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
.+..++|||+|||.++++++|+++|+.||.|.+++++.+ ..+|||||+|.+.++|++|++.|||..+.+ +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~ 88 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS---RKVK 88 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT---EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC---eEEE
Confidence 345689999999999999999999999999987766654 346899999999999999999999999954 6999
Q ss_pred EEeccCc
Q psy11527 178 IEYAKTK 184 (206)
Q Consensus 178 V~~ak~~ 184 (206)
|++++..
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9998764
No 86
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6e-19 Score=128.96 Aligned_cols=79 Identities=18% Similarity=0.360 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...++|||+||+.++++++|+++|+.||.|.+|+|+.+ ..+|||||+|.+.++|++|+ .|||..|.+ +.|+|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~V 98 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG---VPIIV 98 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT---EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC---eEEEE
Confidence 34689999999999999999999999999999999875 35789999999999999999 999999954 69999
Q ss_pred EeccCcc
Q psy11527 179 EYAKTKM 185 (206)
Q Consensus 179 ~~ak~~~ 185 (206)
++++.+.
T Consensus 99 ~~a~~~~ 105 (114)
T 2cq4_A 99 QASQAEK 105 (114)
T ss_dssp EEHHHHH
T ss_pred EecCCCc
Confidence 9998753
No 87
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=1.2e-18 Score=134.11 Aligned_cols=82 Identities=24% Similarity=0.382 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+.++++++|+++|+.||.|++|+|+.+. .++||||+|.+.++|++||..|||..|.+ +.|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~ 112 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD---RIIR 112 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT---EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC---eEEE
Confidence 4457899999999999999999999999999999998762 45799999999999999999999999954 6999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|+|++....
T Consensus 113 V~~a~~~~~ 121 (156)
T 1h2v_Z 113 TDWDAGFKE 121 (156)
T ss_dssp EEEESCCCT
T ss_pred EEECCCCCC
Confidence 999986543
No 88
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=9.8e-18 Score=124.32 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...+++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V 108 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG---RPMDI 108 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS---CEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC---cEEEE
Confidence 445689999999999999999999999999999999876 367899999999999999999999999955 69999
Q ss_pred EeccCc
Q psy11527 179 EYAKTK 184 (206)
Q Consensus 179 ~~ak~~ 184 (206)
+++...
T Consensus 109 ~~a~~~ 114 (124)
T 2kt5_A 109 QLVASQ 114 (124)
T ss_dssp EEECCT
T ss_pred EEeCCC
Confidence 999864
No 89
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-19 Score=127.46 Aligned_cols=78 Identities=29% Similarity=0.435 Sum_probs=68.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC-----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG-----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAI 176 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~-----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l 176 (206)
....++|||+||+.++++++|+++|+.|| |.+|+|..+. .+|||||+|.+.++|++|+ .|||..+.+ +.|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g---~~l 90 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---RRI 90 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT---BCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC---eEE
Confidence 34568999999999999999999999999 9999998753 4789999999999999999 999999954 699
Q ss_pred EEEeccCc
Q psy11527 177 RIEYAKTK 184 (206)
Q Consensus 177 ~V~~ak~~ 184 (206)
+|++++.+
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99999875
No 90
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=125.50 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..++++|||+||+.++++++|+++|+.||.|.+|+|..+. .+|||||+|.+.++|++|+..|||..+.+ +.|+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~ 96 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG---QPIS 96 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS---SBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC---cEEE
Confidence 3456899999999999999999999999999999998763 36899999999999999999999999955 6999
Q ss_pred EEeccCc
Q psy11527 178 IEYAKTK 184 (206)
Q Consensus 178 V~~ak~~ 184 (206)
|++++.+
T Consensus 97 V~~a~~~ 103 (106)
T 1p27_B 97 VDWCFVR 103 (106)
T ss_dssp EEESEES
T ss_pred EEeecCC
Confidence 9999765
No 91
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=126.40 Aligned_cols=82 Identities=28% Similarity=0.400 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCe----eEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGF----SRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v----~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..++++|||+||+.++++++|+++|+.||.| ..+++.....+|||||+|.+.++|++|+..|||..+.+ +.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG---KILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS---CBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC---cEEE
Confidence 4457899999999999999999999999998 67777666778999999999999999999999999955 6999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|+|++.+..
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 999987643
No 92
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=127.30 Aligned_cols=80 Identities=10% Similarity=0.208 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++||.. +|..|. |+.|+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~---g~~l~V 100 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID---GRVVEP 100 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET---TEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC---CEEEEE
Confidence 34589999999999999999999999999999999876 3578999999999999999987 999995 469999
Q ss_pred EeccCccc
Q psy11527 179 EYAKTKMA 186 (206)
Q Consensus 179 ~~ak~~~~ 186 (206)
++++.+..
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 99987643
No 93
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=121.43 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
....++|||+||+.++++++|+++|+.||.|.++++.+ +||||+|.+.++|++|+..|||..+.+ +.|+|+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVKG---KRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEETT---EECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEC
Confidence 44568999999999999999999999999999999974 399999999999999999999999954 69999999
Q ss_pred cCcc
Q psy11527 182 KTKM 185 (206)
Q Consensus 182 k~~~ 185 (206)
+.+.
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 94
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=1.9e-18 Score=124.75 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
..+.++|||+||+.++++++|+++|+.||.|++|+|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V 102 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG---RPMNI 102 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC---cEEEE
Confidence 445789999999999999999999999999999999876 346799999999999999999999999955 69999
Q ss_pred Eecc
Q psy11527 179 EYAK 182 (206)
Q Consensus 179 ~~ak 182 (206)
++++
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 95
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=3.1e-19 Score=127.99 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCC------CCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCC
Q psy11527 104 PCSTLFVANLGQ------FVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDR 173 (206)
Q Consensus 104 ~~~~LfV~nL~~------~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g 173 (206)
.+++|||+|||. ++++++|+++|++||.|.+|+|..+ .++|||||+|.+.++|++|+..|||..+.+ +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g--~ 82 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL--K 82 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS--S
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC--C
Confidence 358999999999 9999999999999999999999876 356899999999999999999999999954 1
Q ss_pred ceEEEEeccCc
Q psy11527 174 GAIRIEYAKTK 184 (206)
Q Consensus 174 ~~l~V~~ak~~ 184 (206)
+.|+|++++.+
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 69999999764
No 96
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.77 E-value=6.5e-19 Score=124.88 Aligned_cols=82 Identities=26% Similarity=0.433 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH----HHhcCCCCeeEEEEecC-CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIK----DIFGSFPGFSRVRMHNK-GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAI 176 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~----~~F~~~G~v~~v~l~~~-~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l 176 (206)
.+++++|||+||+.++++++|+ ++|++||.|.+|++... ..+|||||+|.+.++|++|+..|||..+. |+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY---DKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC---CcEE
Confidence 4467899999999999999999 99999999999998743 45789999999999999999999999995 4699
Q ss_pred EEEeccCccc
Q psy11527 177 RIEYAKTKMA 186 (206)
Q Consensus 177 ~V~~ak~~~~ 186 (206)
+|++++.+..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999988643
No 97
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=7.2e-19 Score=131.95 Aligned_cols=80 Identities=21% Similarity=0.286 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeE--EEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCC----eecCC
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSR--VRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGS----YLASS 171 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~--v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~----~i~~~ 171 (206)
...+++|||+||++++++++|+++|++||.|.. |+|+++ .++|||||+|.+. +|.+|+..|||. .+.+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g- 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG- 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC-
Confidence 345689999999999999999999999999976 898876 3679999999999 999999999999 8854
Q ss_pred CCceEEEEeccCcc
Q psy11527 172 DRGAIRIEYAKTKM 185 (206)
Q Consensus 172 ~g~~l~V~~ak~~~ 185 (206)
+.|+|++++.+.
T Consensus 98 --r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 --KTINVEFAKGSK 109 (131)
T ss_dssp --CCCCCEECCCSC
T ss_pred --EEEEEEECCCCC
Confidence 699999998754
No 98
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=1.9e-18 Score=126.36 Aligned_cols=80 Identities=23% Similarity=0.385 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC-CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~-~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
..+++|||+||+.++++++|+++|+.||.|.+|++..+ .++|||||+|.+.++|.+|+..|||..+.+ +.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN---RYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS---CBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEe
Confidence 34689999999999999999999999999999999876 457999999999999999999999999955 69999999
Q ss_pred cCcc
Q psy11527 182 KTKM 185 (206)
Q Consensus 182 k~~~ 185 (206)
+.+.
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8643
No 99
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.9e-18 Score=125.83 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+.++++++|+++|+.||.|.+|+|..+ .++|||||+|.+.++|++|+..+ +..+. |+.|+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~---g~~l~ 97 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD---SKTID 97 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET---TEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC---CEEEE
Confidence 455789999999999999999999999999999999875 35789999999999999999876 57784 57999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|++++.+..
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999987643
No 100
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=125.12 Aligned_cols=80 Identities=13% Similarity=0.218 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+.. ||..|.+ +.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g---~~l~ 88 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG---RNID 88 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT---EEEB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC---EEEE
Confidence 456789999999999999999999999999999999876 3457999999999999999988 9999955 6999
Q ss_pred EEeccCcc
Q psy11527 178 IEYAKTKM 185 (206)
Q Consensus 178 V~~ak~~~ 185 (206)
|++++.+.
T Consensus 89 V~~a~~~~ 96 (105)
T 2dh8_A 89 PKPCTPRG 96 (105)
T ss_dssp CCCSCCSS
T ss_pred EEEccCCC
Confidence 99998764
No 101
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=2.4e-18 Score=119.90 Aligned_cols=76 Identities=18% Similarity=0.311 Sum_probs=69.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
.++|||+||+.++++++|+++|+.||.|.++++..+ ..+|||||+|.+.++|++|+ .|||..+.+ +.|+|++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g---~~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG---RQIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT---EECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC---cEEEEEE
Confidence 479999999999999999999999999999999875 34789999999999999999 999999954 6999999
Q ss_pred ccCc
Q psy11527 181 AKTK 184 (206)
Q Consensus 181 ak~~ 184 (206)
++.+
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 9864
No 102
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=122.76 Aligned_cols=77 Identities=27% Similarity=0.499 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCC-eeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCC-CeecCCCCceEEEEe
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPG-FSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNG-SYLASSDRGAIRIEY 180 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~-v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng-~~i~~~~g~~l~V~~ 180 (206)
...++|||+||+.++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|+..||| ..+. |+.|+|++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELH---GKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEET---TEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeEC---CEEEEEEE
Confidence 45689999999999999999999999999 6666653 578999999999999999999999 8995 46999999
Q ss_pred ccCcc
Q psy11527 181 AKTKM 185 (206)
Q Consensus 181 ak~~~ 185 (206)
++.+.
T Consensus 80 a~~~~ 84 (93)
T 2cqh_A 80 SVSKK 84 (93)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 98764
No 103
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.4e-18 Score=121.57 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+. ++..+. |+.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~---g~~l~ 86 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID---GRWCD 86 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET---TEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC---CeEEE
Confidence 445689999999999999999999999999999999876 336799999999999999997 577784 56999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|++++.+..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999987643
No 104
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=9.9e-19 Score=135.48 Aligned_cols=78 Identities=12% Similarity=0.199 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCC--CeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFP--GFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G--~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..++|||+||+.++++++|+++|+.|| .|.+|+|+.+ .++|||||+|.+.++|++||..|||..|. |+.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~---Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN---GEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET---TEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CeEeE
Confidence 458999999999999999999999999 9999999876 34689999999999999999999999995 46999
Q ss_pred EEeccCc
Q psy11527 178 IEYAKTK 184 (206)
Q Consensus 178 V~~ak~~ 184 (206)
|++++.+
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9999764
No 105
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.5e-19 Score=126.78 Aligned_cols=78 Identities=9% Similarity=0.140 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
...++|||+|||.++++++|+++|+.||.|.+|+|..+ .++|||||+|.+.++|++|+. +||..+.+ +.|+|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g---r~l~V~ 84 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE---TDLLIL 84 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTT---TTCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECC---EEEEEE
Confidence 34689999999999999999999999999999999875 467999999999999999997 99999955 699999
Q ss_pred eccCc
Q psy11527 180 YAKTK 184 (206)
Q Consensus 180 ~ak~~ 184 (206)
+++.-
T Consensus 85 ~~~~~ 89 (103)
T 1s79_A 85 FKDDY 89 (103)
T ss_dssp EHHHH
T ss_pred EchHH
Confidence 98764
No 106
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=7.2e-18 Score=125.98 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=68.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCE-EEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccCcc
Q psy11527 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPV-AFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTKM 185 (206)
Q Consensus 107 ~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~-aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~~~ 185 (206)
.|||+||++.+++++|+++|++||.|++|+|..+ .|| |||+|.+.++|++|++.|||..|.+ .++.|+|+|++.+.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g-~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYA-GCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBT-TBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecC-CCeEEEEEEecCCc
Confidence 4689999999999999999999999999999753 486 9999999999999999999999977 25799999999864
No 107
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.6e-19 Score=122.02 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
.+.++|||+||+.++++++|+++|+.||.|.+++|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA---QMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE---ESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee---EEEee
Confidence 34689999999999999999999999999999999875 347899999999999999999999999954 58877
Q ss_pred Eecc
Q psy11527 179 EYAK 182 (206)
Q Consensus 179 ~~ak 182 (206)
++++
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 6654
No 108
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=5.3e-18 Score=127.63 Aligned_cols=77 Identities=23% Similarity=0.340 Sum_probs=69.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+.++++++|+++|+.||.|.++++..+ ..+|||||+|.+.++|++|++.|||..+.+ +.|+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~ 136 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---RTIR 136 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT---EEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC---EEEE
Confidence 445789999999999999999999999999999999775 457899999999999999999999999954 6999
Q ss_pred EEec
Q psy11527 178 IEYA 181 (206)
Q Consensus 178 V~~a 181 (206)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 109
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=7.2e-19 Score=124.20 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=67.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
+..++|||+|||.++++++|+++|++||.|.+++++.+ ..+|||||+|.+.++|++|++.|||..+.+ +.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---r~l~v 89 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS---RKVKL 89 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC---cEEEE
Confidence 34589999999999999999999999999988777664 346899999999999999999999999954 69999
Q ss_pred EeccC
Q psy11527 179 EYAKT 183 (206)
Q Consensus 179 ~~ak~ 183 (206)
++++.
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 99864
No 110
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=3e-18 Score=131.13 Aligned_cols=80 Identities=24% Similarity=0.391 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
....++|||+||+.++++++|+++|+.||.|.+|++..+ ++|||||+|.+.++|++|+..|||..+.+ +.|+|+++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a 145 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCG---CRVRVELS 145 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSS---SCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEc
Confidence 445689999999999999999999999999999999875 78999999999999999999999999954 69999999
Q ss_pred cCcc
Q psy11527 182 KTKM 185 (206)
Q Consensus 182 k~~~ 185 (206)
+.+.
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 111
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-17 Score=121.15 Aligned_cols=83 Identities=14% Similarity=0.308 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCC-----CC
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASS-----DR 173 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~-----~g 173 (206)
..+.++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..|||..+.+. .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345689999999999999999999999999999999876 3467999999999999999999999999532 25
Q ss_pred ceEEEEeccCc
Q psy11527 174 GAIRIEYAKTK 184 (206)
Q Consensus 174 ~~l~V~~ak~~ 184 (206)
++|+|.|++.+
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 68999999864
No 112
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=4.8e-19 Score=124.42 Aligned_cols=77 Identities=10% Similarity=0.157 Sum_probs=65.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCC--CeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFP--GFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G--~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
.+|||+||+.++++++|+++|+.|| .|.++++..+ .++|||||+|.+.++|++|++.|||..+.| +.|+|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g---r~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG---QNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS---CCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC---EEEEEE
Confidence 5899999999999999999999999 9999999876 346899999999999999999999999955 699999
Q ss_pred eccCcc
Q psy11527 180 YAKTKM 185 (206)
Q Consensus 180 ~ak~~~ 185 (206)
+++...
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 998753
No 113
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=122.65 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
..+.++|||+||+.++++++|+++|+.||.|..+ ......+|||||+|.+.++|++|+..|||..+.+ +.|+|+++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG---RSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT---EEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEEc
Confidence 3456899999999999999999999999999877 3323567899999999999999999999999954 69999999
Q ss_pred cCcccc
Q psy11527 182 KTKMAE 187 (206)
Q Consensus 182 k~~~~~ 187 (206)
+.+...
T Consensus 89 ~~~~~~ 94 (96)
T 1fjc_A 89 GEKGGT 94 (96)
T ss_dssp SSSCCC
T ss_pred CCCCCC
Confidence 876543
No 114
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=124.95 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
..++|||+||+.++++++|+++|++||.|.+|+|.. .++||||+|.+.++|++|+..|||..+.+ +.|+|+|++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHH---VPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSS---SBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECC---eEEEEEECCC
Confidence 457999999999999999999999999999999864 67899999999999999999999999955 6999999986
Q ss_pred cc
Q psy11527 184 KM 185 (206)
Q Consensus 184 ~~ 185 (206)
+.
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 53
No 115
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.1e-18 Score=118.34 Aligned_cols=78 Identities=15% Similarity=0.269 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
...++|||+|||.++++++|+++|+.| .|.+|+|+.+ ..+|||||+|.+.++|++|+. |||..+. |+.|+|.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~---gr~i~v~ 82 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG---GRYIEVF 82 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET---TEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC---CcEEEEE
Confidence 456899999999999999999999999 9999999876 346799999999999999999 9999995 4699999
Q ss_pred eccCcc
Q psy11527 180 YAKTKM 185 (206)
Q Consensus 180 ~ak~~~ 185 (206)
+++.+.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998763
No 116
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=123.19 Aligned_cols=80 Identities=21% Similarity=0.261 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCC------cHHHHHHHhcCCCCeeEEEEecC--CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCC
Q psy11527 102 MSPCSTLFVANLGQFV------SEQEIKDIFGSFPGFSRVRMHNK--GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDR 173 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~------te~~L~~~F~~~G~v~~v~l~~~--~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g 173 (206)
....++|||+|||..+ ++++|+++|++||.|.+|+|.+. .++|||||+|.+.++|++|+..|||..+. |
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~---g 88 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD---K 88 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS---T
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC---C
Confidence 3346899999999999 78999999999999999999743 45789999999999999999999999994 4
Q ss_pred c-eEEEEeccCc
Q psy11527 174 G-AIRIEYAKTK 184 (206)
Q Consensus 174 ~-~l~V~~ak~~ 184 (206)
+ .|+|++++..
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 6 9999998753
No 117
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.8e-18 Score=122.95 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCC-eeEEEEe-cC----CCCCEEEEEeCCHHHHHHHHHHhC--CCeecCCCCc
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPG-FSRVRMH-NK----GGSPVAFIEYTDVNFAIQAMSNLN--GSYLASSDRG 174 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~-v~~v~l~-~~----~~~g~aFV~f~~~~~A~~Al~~Ln--g~~i~~~~g~ 174 (206)
.+.++|||+||+.++++++|+++|+.||. |.++++. .+ ..+|||||+|.+.++|++|+..|| +..+. |+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~---g~ 82 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW---GH 82 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT---TB
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec---CC
Confidence 34689999999999999999999999998 9999987 33 467899999999999999999996 58885 46
Q ss_pred eEEEEeccCccc
Q psy11527 175 AIRIEYAKTKMA 186 (206)
Q Consensus 175 ~l~V~~ak~~~~ 186 (206)
.|+|+|++.+..
T Consensus 83 ~l~V~~a~~~~~ 94 (109)
T 2dis_A 83 QIAVDWAEPEID 94 (109)
T ss_dssp CCEEEESCSSCS
T ss_pred eEEEEEcCCCCC
Confidence 999999987643
No 118
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=120.36 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeE-EEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSR-VRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~-v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
....++|||+|||+++++++|+++|+.||.|.+ |+|..+ ..+|||||+|.+.++|++||.. ||..+. +|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~---gr~i~ 87 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG---HRYIE 87 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS---SSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC---CcEEE
Confidence 345689999999999999999999999999987 887765 4578999999999999999987 999984 46999
Q ss_pred EEeccCc
Q psy11527 178 IEYAKTK 184 (206)
Q Consensus 178 V~~ak~~ 184 (206)
|.++..+
T Consensus 88 v~~~~~~ 94 (104)
T 1wg5_A 88 IFKSSRA 94 (104)
T ss_dssp EEEECTT
T ss_pred EEECCHH
Confidence 9988654
No 119
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.4e-18 Score=119.60 Aligned_cols=78 Identities=15% Similarity=0.267 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEE-EecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVR-MHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~-l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
..++|||+||+.++++++|+++|+.||.|.+++ +..+...+.|||+|.+.++|++|+..|||..+.+ +.|+|++++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN---FTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS---CBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEcC
Confidence 458999999999999999999999999999994 7777666679999999999999999999999955 699999998
Q ss_pred Cc
Q psy11527 183 TK 184 (206)
Q Consensus 183 ~~ 184 (206)
.+
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 120
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.7e-18 Score=120.19 Aligned_cols=79 Identities=20% Similarity=0.354 Sum_probs=67.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+.++++++|+++|+.|+. ++++.+ ..+|||||+|.+.++|++|+..|||..|.+ +.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 85 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG---NKVT 85 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT---EECE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC---eEEE
Confidence 445689999999999999999999998854 445443 346899999999999999999999999955 6999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|++++.+..
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999987643
No 121
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=8e-18 Score=117.00 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=67.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+|||.++++++|+++|++||.|.++++..+. ++|||||+|.+.++|++|+. +++..+. |+.|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g~~i~ 83 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD---GRVID 83 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET---TEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC---CEEEE
Confidence 4456899999999999999999999999999999998763 36899999999999999994 5888884 56999
Q ss_pred EEec
Q psy11527 178 IEYA 181 (206)
Q Consensus 178 V~~a 181 (206)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 122
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=123.51 Aligned_cols=81 Identities=28% Similarity=0.439 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..++|||+||+.++++++|+++|+.||.|.++++..+. ++|||||+|.+.++|++|++.|||..+.+ +.|+|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 83 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG---RALRVD 83 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS---SCBEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEE
Confidence 45899999999999999999999999999999998752 36899999999999999999999999955 699999
Q ss_pred eccCcccc
Q psy11527 180 YAKTKMAE 187 (206)
Q Consensus 180 ~ak~~~~~ 187 (206)
+++.+...
T Consensus 84 ~a~~~~~~ 91 (104)
T 1p1t_A 84 NAASEKNK 91 (104)
T ss_dssp ETTCTTHH
T ss_pred eCCCccch
Confidence 99886543
No 123
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=7e-18 Score=118.63 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=64.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
+..+|||+||++++++++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|+ .++|..+.. +++.|+|.+++.
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~----~~~~~~~~~-~g~~v~v~~a~~ 83 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQ----SLCGEDLII-KGISVHISNAEP 83 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHH----HHTTCEEEE-TTEEEEEEECC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHH----HHcCCCccc-CCEEEEEEEcCC
Confidence 4579999999999999999999999999999999875 8899999999999988 367777654 378999999987
Q ss_pred cc
Q psy11527 184 KM 185 (206)
Q Consensus 184 ~~ 185 (206)
+.
T Consensus 84 k~ 85 (89)
T 3d2w_A 84 KH 85 (89)
T ss_dssp --
T ss_pred CC
Confidence 53
No 124
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.2e-18 Score=124.32 Aligned_cols=80 Identities=10% Similarity=0.080 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCe-eEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGF-SRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v-~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+.++++++|+++|+.||.| .+|+|+.+ ..+|||||+|.+.++|++||.. ||..|. ++.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~---gr~i~ 87 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN---GREAF 87 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET---TEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC---CeEEE
Confidence 3456899999999999999999999999999 88999875 4678999999999999999976 999995 46999
Q ss_pred EEeccCcc
Q psy11527 178 IEYAKTKM 185 (206)
Q Consensus 178 V~~ak~~~ 185 (206)
|.+++.+.
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99998654
No 125
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.74 E-value=3.6e-17 Score=136.50 Aligned_cols=80 Identities=30% Similarity=0.486 Sum_probs=72.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 101 ~~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
...++++|||+||+.++++++|+++|+.||.|++|++..+ .+|||||+|.+.++|.+|+..|||..+.+ |+.|+|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~--g~~l~v~~ 279 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG-RHDIAFVEFDNEVQAGAARDALQGFKITQ--NNAMKISF 279 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC-CCcEEEEEeCCHHHHHHHHHHcCCcEeCC--CCEEEEEE
Confidence 4566889999999999999999999999999999999864 46899999999999999999999999961 46999999
Q ss_pred ccC
Q psy11527 181 AKT 183 (206)
Q Consensus 181 ak~ 183 (206)
+|+
T Consensus 280 akk 282 (282)
T 3pgw_A 280 AKK 282 (282)
T ss_pred ecC
Confidence 974
No 126
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.74 E-value=7.5e-18 Score=117.77 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
.+++|||+|||.++++++|+++|++| .|.++++. ..+|||||+|.+.++|++|++.|||..+.+ +.|+|++++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG---KDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETT---EEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECC---cEEEEEEcCC
Confidence 45899999999999999999999999 99999985 578999999999999999999999999954 6999999977
Q ss_pred cc
Q psy11527 184 KM 185 (206)
Q Consensus 184 ~~ 185 (206)
+.
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 127
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-18 Score=123.89 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...++|||+||+.++++++|+++|+.||.|.+ .++.+ .++|||||+|.+.++|++|++ |||..+.+ +.|+|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g---~~l~V 89 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG---NEIKL 89 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT---BCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC---cEEEE
Confidence 34689999999999999999999999998877 33332 578999999999999999998 99999954 69999
Q ss_pred EeccCccc
Q psy11527 179 EYAKTKMA 186 (206)
Q Consensus 179 ~~ak~~~~ 186 (206)
++++.+..
T Consensus 90 ~~a~~~~~ 97 (101)
T 1fj7_A 90 EKPKGRDG 97 (101)
T ss_dssp ECCSCCCC
T ss_pred EEcCCCCC
Confidence 99987543
No 128
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=3.2e-18 Score=129.40 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+.++++++|+++|+.||.|.+|+|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g---~~l~ 120 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG---RELR 120 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS---SCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---EEEE
Confidence 345689999999999999999999999999999999865 457899999999999999999999999955 5999
Q ss_pred EEeccCcc
Q psy11527 178 IEYAKTKM 185 (206)
Q Consensus 178 V~~ak~~~ 185 (206)
|++++.+.
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998753
No 129
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.74 E-value=1.3e-17 Score=128.23 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...++|||+||+.++++++|+++|+.||.|.+|+|..+ .++|||||+|.+.++|++|+..|||..+.+ +.|+|
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v 144 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG---RELRV 144 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS---SEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC---eEEEE
Confidence 45689999999999999999999999999999999875 467899999999999999999999999955 69999
Q ss_pred EeccCcc
Q psy11527 179 EYAKTKM 185 (206)
Q Consensus 179 ~~ak~~~ 185 (206)
++++.+.
T Consensus 145 ~~a~~~~ 151 (158)
T 2kn4_A 145 QMARYGR 151 (158)
T ss_dssp EEECCSS
T ss_pred EECCCCC
Confidence 9998753
No 130
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=118.25 Aligned_cols=76 Identities=14% Similarity=0.216 Sum_probs=66.4
Q ss_pred CCCCE-EEEcCCCCCCcHHH----HHHHhcCC-CCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceE
Q psy11527 103 SPCST-LFVANLGQFVSEQE----IKDIFGSF-PGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAI 176 (206)
Q Consensus 103 ~~~~~-LfV~nL~~~~te~~----L~~~F~~~-G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l 176 (206)
+++.| |||+||++++++++ |+++|++| |+|.+|. .|+|||+|.+.++|++|++.|||..+.+ |+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~g---r~i 76 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFG---NRI 76 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSS---SCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCC---ceE
Confidence 44566 99999999999988 55899999 5999882 2899999999999999999999999966 599
Q ss_pred EEEeccCcccc
Q psy11527 177 RIEYAKTKMAE 187 (206)
Q Consensus 177 ~V~~ak~~~~~ 187 (206)
+|+|++.++..
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999987653
No 131
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=120.02 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=67.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
...++|||+|||++++++||+++|+.|| +++|+|+.+ ..+|||||+|.+.++|++|| .+|+..|.+ |.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g---r~i~V~ 87 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQH---RYVELF 87 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSS---SCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECC---cEEEEE
Confidence 3458999999999999999999999999 459999876 34679999999999999999 579999854 699999
Q ss_pred eccCcc
Q psy11527 180 YAKTKM 185 (206)
Q Consensus 180 ~ak~~~ 185 (206)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 887654
No 132
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=3.2e-18 Score=117.77 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=63.4
Q ss_pred CCEEEEcCCCCCC------cHHHHHHHhcCCCCeeEEEEecC--CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCc-e
Q psy11527 105 CSTLFVANLGQFV------SEQEIKDIFGSFPGFSRVRMHNK--GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRG-A 175 (206)
Q Consensus 105 ~~~LfV~nL~~~~------te~~L~~~F~~~G~v~~v~l~~~--~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~-~ 175 (206)
+++|||+|||..+ ++++|+++|++||.|.+++|.++ .++|||||+|.+.++|++|+..|||..+.+ + .
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g---~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK---QHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS---SSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC---cee
Confidence 3799999999999 78999999999999999998743 467999999999999999999999999954 5 7
Q ss_pred EEE
Q psy11527 176 IRI 178 (206)
Q Consensus 176 l~V 178 (206)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 765
No 133
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.2e-18 Score=124.13 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=70.7
Q ss_pred CCCCEEEE--cCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCee---cCCCCceEE
Q psy11527 103 SPCSTLFV--ANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYL---ASSDRGAIR 177 (206)
Q Consensus 103 ~~~~~LfV--~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i---~~~~g~~l~ 177 (206)
.++++||| |||+.++++++|+++|++||.|.+|.|.. ++|||||+|.+.++|++|+..|||..+ .+ .+++|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg-~g~~l~ 99 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG-QKITLY 99 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS-CEEECE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccC-CCcEEE
Confidence 35689999 77999999999999999999999998864 578999999999999999999999987 33 267999
Q ss_pred EEeccCcc
Q psy11527 178 IEYAKTKM 185 (206)
Q Consensus 178 V~~ak~~~ 185 (206)
|.|++...
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99998654
No 134
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=1.4e-17 Score=134.30 Aligned_cols=78 Identities=15% Similarity=0.272 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCC-CCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 103 SPCSTLFVANLG-QFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 103 ~~~~~LfV~nL~-~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
.++++|||+||+ .++++++|+++|++||.|.+|+++++ ++|||||+|.+.++|++|++.|||..+.+ +.|+|.++
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g---~~l~v~~s 77 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFG---QKMNVCVS 77 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETT---EECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECC---ceEEEEEc
Confidence 356899999999 89999999999999999999999874 68999999999999999999999999965 69999999
Q ss_pred cCc
Q psy11527 182 KTK 184 (206)
Q Consensus 182 k~~ 184 (206)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 135
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=5.1e-18 Score=136.87 Aligned_cols=79 Identities=18% Similarity=0.363 Sum_probs=72.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC--CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK--GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~--~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
..++|||+||+.++++++|+++|+.||.|++|+|+.+ .++|||||+|.+.++|++|++.|||..|. |+.|+|+++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~---g~~i~V~~a 178 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN---DRKVFVGRF 178 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEEEC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC---CEEEEEEEc
Confidence 3579999999999999999999999999999999876 45789999999999999999999999995 469999999
Q ss_pred cCcc
Q psy11527 182 KTKM 185 (206)
Q Consensus 182 k~~~ 185 (206)
+.+.
T Consensus 179 ~~~~ 182 (213)
T 4f02_A 179 KSRK 182 (213)
T ss_dssp CCHH
T ss_pred CCCc
Confidence 8754
No 136
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=8.6e-18 Score=124.06 Aligned_cols=78 Identities=12% Similarity=0.073 Sum_probs=69.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCC---eeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPG---FSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAI 176 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~---v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l 176 (206)
...++|||+||++++++++|+++|+.||. |.+|+|+.+ ..+|||||+|.+.++|++||. +||..|. +|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---gr~i 90 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG---HRYI 90 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET---TEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC---CeEE
Confidence 45689999999999999999999999999 899999875 346899999999999999998 9999994 5799
Q ss_pred EEEeccCc
Q psy11527 177 RIEYAKTK 184 (206)
Q Consensus 177 ~V~~ak~~ 184 (206)
+|.+++.+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998754
No 137
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=116.01 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
...++|||+||+.++++++|+++|+.||.|.+|.+..+.++ ||||+|.+.++|++|+. |||..+.+ +.|+|+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g---~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGG---HRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETT---EECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECC---EEEEEEECC
Confidence 34579999999999999999999999999999833322333 99999999999999998 99999954 699999887
Q ss_pred Ccc
Q psy11527 183 TKM 185 (206)
Q Consensus 183 ~~~ 185 (206)
.+.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 643
No 138
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=1.5e-17 Score=122.17 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=65.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCce-----EEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGA-----IRI 178 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~-----l~V 178 (206)
..++|||+||+.++++++|+++|++||.|.+|+|+.+ |||||+|.+.++|++||..|||..|.+ +. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g---r~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRS---HEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCC---TTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECC---cEeeeEEEEe
Confidence 4589999999999999999999999999999999875 899999999999999999999999966 46 777
Q ss_pred EeccCcc
Q psy11527 179 EYAKTKM 185 (206)
Q Consensus 179 ~~ak~~~ 185 (206)
..++.+.
T Consensus 89 ~~~~~~~ 95 (115)
T 3beg_B 89 KVDGPRS 95 (115)
T ss_dssp EECC---
T ss_pred ccCCCCC
Confidence 7776643
No 139
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=1.6e-17 Score=129.32 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..++++|||+||+..+++++|+++|+.||.|..|+|..+. .+|||||+|.+.++|++||..|||..|.+ +.|+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~ 145 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG---QTIQ 145 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC---EEEE
Confidence 3456899999999999999999999999999999998752 46899999999999999999999999955 6999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|.|++.+..
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999987644
No 140
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=2.3e-18 Score=120.52 Aligned_cols=76 Identities=20% Similarity=0.368 Sum_probs=67.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
++|||+||+.++++++|+++|+.||.|.++++..+ .++|||||+|.+.+ |.+|+..|||..+.+ +.|+|+++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g---~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG---RTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS---SSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC---eEEEEEEc
Confidence 68999999999999999999999999999999875 34789999999999 999999999999955 69999999
Q ss_pred cCcc
Q psy11527 182 KTKM 185 (206)
Q Consensus 182 k~~~ 185 (206)
..+.
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 8753
No 141
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=7.6e-18 Score=113.91 Aligned_cols=71 Identities=11% Similarity=0.214 Sum_probs=64.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 107 ~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
+|||+|||.++++++|+++|++||.|.++++..+ .++|||||+|.+.++|++|+. |||..+.+ +.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g---~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN---KMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS---CCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC---EEEEEEeC
Confidence 5899999999999999999999999999999765 346899999999999999996 99999955 69999875
No 142
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.72 E-value=3.1e-17 Score=121.82 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
...+++|||+|| ++++++|+++|+.||.|.+|+|. ..+|||||+|.+.++|++|+..|||..+.+ +.|+|+|+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g---~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES---VQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSS---CBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEEe
Confidence 345789999996 69999999999999999999996 578999999999999999999999999955 69999999
Q ss_pred cCcc
Q psy11527 182 KTKM 185 (206)
Q Consensus 182 k~~~ 185 (206)
+.+.
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
No 143
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1e-17 Score=113.58 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=65.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
++|||+|||.++++++|+++|++||.|.++++..+ .++|||||+|.+.++|++|+..++ ..+.+ +.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g---~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS---KTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS---CCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC---EEEEEEec
Confidence 48999999999999999999999999999999875 347899999999999999999999 88854 69999986
No 144
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=125.70 Aligned_cols=81 Identities=27% Similarity=0.462 Sum_probs=69.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeE--------EEEec-CCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCC
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSR--------VRMHN-KGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSD 172 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~--------v~l~~-~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~ 172 (206)
..++++|||+||+.++++++|+++|+.||.|.+ +++.. ..++|||||+|.+.++|.+|+..|||..+.+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-- 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG-- 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC--
Confidence 445689999999999999999999999999876 33332 3677899999999999999999999999954
Q ss_pred CceEEEEeccCcc
Q psy11527 173 RGAIRIEYAKTKM 185 (206)
Q Consensus 173 g~~l~V~~ak~~~ 185 (206)
+.|+|++++...
T Consensus 120 -~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 -KPMVVQFARSAR 131 (143)
T ss_dssp -EECEEEECCCSC
T ss_pred -cEEEEEECCCCC
Confidence 699999998753
No 145
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=113.89 Aligned_cols=76 Identities=22% Similarity=0.306 Sum_probs=65.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
..++|||+||+.++++++|+++|+.||.|.+|+|..+ ++|||||+|.+.++|++ +++..+.. +++.|+|.+++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~----~~~~~~~~-~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQS----LCGEDLII-KGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHH----TTTCEEEE-TTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHH----HhcCCcee-CCEEEEEEecCC
Confidence 4589999999999999999999999999999999865 78999999999999975 45555544 367999999887
Q ss_pred cc
Q psy11527 184 KM 185 (206)
Q Consensus 184 ~~ 185 (206)
+.
T Consensus 78 ~~ 79 (88)
T 1wf0_A 78 KH 79 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 146
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=6.8e-18 Score=122.34 Aligned_cols=79 Identities=9% Similarity=0.065 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCC---eeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCce
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPG---FSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGA 175 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~---v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~ 175 (206)
....++|||+||++++++++|+++|+.||. |.+|+|+.+ ..+|||||+|.+.++|++||. +||..+. ||.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~---gr~ 83 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG---QRY 83 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS---SSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC---CeE
Confidence 445689999999999999999999999988 899999876 457899999999999999998 9999984 469
Q ss_pred EEEEeccCc
Q psy11527 176 IRIEYAKTK 184 (206)
Q Consensus 176 l~V~~ak~~ 184 (206)
|+|.+++.+
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999998764
No 147
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=1.3e-17 Score=126.53 Aligned_cols=78 Identities=12% Similarity=0.061 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCC---eeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPG---FSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAI 176 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~---v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l 176 (206)
...++|||+||++++++++|+++|+.||. |.+|+|+.+ .++|||||+|.+.++|++||. |||..|. +|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~---gr~i 117 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG---HRYI 117 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS---SSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC---CEEE
Confidence 34689999999999999999999999999 889999876 446899999999999999998 9999995 5699
Q ss_pred EEEeccCc
Q psy11527 177 RIEYAKTK 184 (206)
Q Consensus 177 ~V~~ak~~ 184 (206)
+|.+++.+
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998654
No 148
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4e-17 Score=119.22 Aligned_cols=76 Identities=11% Similarity=0.177 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
..++|||+|||++++++||+++|+.| .|.+|+|+.+ +.+|||||+|.+.++|++|| .+||..|. +|.|+|..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~---gr~i~V~~ 89 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI---QRYVEVSP 89 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET---TEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC---CeEEEEEE
Confidence 45799999999999999999999999 8999999876 45799999999999999999 79999994 57999988
Q ss_pred ccCc
Q psy11527 181 AKTK 184 (206)
Q Consensus 181 ak~~ 184 (206)
++.+
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 8654
No 149
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=1.7e-17 Score=136.03 Aligned_cols=78 Identities=10% Similarity=0.163 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCC--CeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFP--GFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G--~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..++|||+||+.++++++|+++|+.|| .|++|+|+.+ .++|||||+|.+.++|++||..|||..|.+ +.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G---r~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG---QNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT---BCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC---EEeE
Confidence 457999999999999999999999999 9999999876 356899999999999999999999999955 6999
Q ss_pred EEeccCc
Q psy11527 178 IEYAKTK 184 (206)
Q Consensus 178 V~~ak~~ 184 (206)
|++++..
T Consensus 144 V~~a~~~ 150 (229)
T 3q2s_C 144 VTPVNKQ 150 (229)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 9998753
No 150
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-17 Score=123.79 Aligned_cols=79 Identities=11% Similarity=0.124 Sum_probs=67.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...++|||+||++++++++|+++|+.||.|.++.++.+ ..+|||||+|.+.++|++||. |||..|.+ +.|+|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g---r~i~V 98 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN---RFIQV 98 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT---SCBEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC---cEEEE
Confidence 34589999999999999999999999999987443332 346899999999999999998 99999955 69999
Q ss_pred EeccCcc
Q psy11527 179 EYAKTKM 185 (206)
Q Consensus 179 ~~ak~~~ 185 (206)
.+++.+.
T Consensus 99 ~~a~~~~ 105 (124)
T 1wel_A 99 HPITKKG 105 (124)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997653
No 151
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-18 Score=127.79 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeE--------EEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSR--------VRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLA 169 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~--------v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~ 169 (206)
..+.++|||+||+.++++++|+++|+.||.|.+ |+|..+ ..+|||||+|.+.++|++|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 445689999999999999999999999999998 888765 45789999999999999999999999995
Q ss_pred CCCCceEEEEeccCccc
Q psy11527 170 SSDRGAIRIEYAKTKMA 186 (206)
Q Consensus 170 ~~~g~~l~V~~ak~~~~ 186 (206)
+ +.|+|++++.+..
T Consensus 84 g---~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 G---NPIKVSFATRRAD 97 (116)
Confidence 5 6999999987643
No 152
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.69 E-value=6.1e-17 Score=112.27 Aligned_cols=72 Identities=22% Similarity=0.405 Sum_probs=65.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCC----C-------CeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCC
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSF----P-------GFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASS 171 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~----G-------~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~ 171 (206)
.+.++|||+||+.++++++|+++|+.| | .|.++++.. .+|||||+|.+.++|++|+ .|||..+.+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~g- 79 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG- 79 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEETT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEECC-
Confidence 346899999999999999999999999 8 899999975 4789999999999999999 999999955
Q ss_pred CCceEEEEe
Q psy11527 172 DRGAIRIEY 180 (206)
Q Consensus 172 ~g~~l~V~~ 180 (206)
+.|+|+.
T Consensus 80 --~~l~V~r 86 (87)
T 2hzc_A 80 --QSLKIRR 86 (87)
T ss_dssp --EECEEEC
T ss_pred --eEEEEeC
Confidence 6999874
No 153
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=7.1e-17 Score=130.14 Aligned_cols=79 Identities=18% Similarity=0.297 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
+.++|||+|||.+++|++|+++|++||.|++|+|+++ .++|||||+|.+.++|++|+..+|+..+.+ +.|++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g---~~i~~~ 90 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG---KPVRIM 90 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC---cccccc
Confidence 4579999999999999999999999999999999876 356899999999999999999999999955 699999
Q ss_pred eccCcc
Q psy11527 180 YAKTKM 185 (206)
Q Consensus 180 ~ak~~~ 185 (206)
++....
T Consensus 91 ~~~~~~ 96 (213)
T 4f02_A 91 WSQRDP 96 (213)
T ss_dssp ECCCCT
T ss_pred cccccc
Confidence 987653
No 154
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1.6e-17 Score=126.41 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
...++|||+|||++++++||+++|+.|| |++|+|+.+ .++|||||+|.+.++|++|| .+|+..|.+ |.|+|.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g---R~i~V~ 118 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQH---RYIELF 118 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS---CCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECC---EEEEEE
Confidence 3457999999999999999999999999 779999876 45789999999999999999 899999954 699999
Q ss_pred eccCccc
Q psy11527 180 YAKTKMA 186 (206)
Q Consensus 180 ~ak~~~~ 186 (206)
.+..+..
T Consensus 119 ~a~~~~~ 125 (139)
T 2hgn_A 119 LNSTTGA 125 (139)
T ss_dssp ECCCSCC
T ss_pred ECCCCCC
Confidence 9877543
No 155
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=1.1e-16 Score=126.31 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...+++|||+||+.++++++|+++|+.||.|++|+|..+ ..+|||||+|.+.++|++|+..|||..+.+ +.|+|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G---r~l~V 161 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG---RPMDI 161 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS---SBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC---EEEEE
Confidence 345789999999999999999999999999999999875 457899999999999999999999999955 59999
Q ss_pred EeccCc
Q psy11527 179 EYAKTK 184 (206)
Q Consensus 179 ~~ak~~ 184 (206)
+|+...
T Consensus 162 ~~a~~~ 167 (177)
T 2f3j_A 162 QLVASQ 167 (177)
T ss_dssp EEESSG
T ss_pred EEecCC
Confidence 999764
No 156
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.6e-16 Score=120.30 Aligned_cols=79 Identities=23% Similarity=0.409 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
....++|||+||+.++++++|+++|+.||.|.++++..+ ..+|||||+|.+.++|.+|+..|||..+. |+.|+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i~ 160 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN---GRPLR 160 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC---CcEEE
Confidence 345689999999999999999999999999999999875 34679999999999999999999999995 57999
Q ss_pred EEeccC
Q psy11527 178 IEYAKT 183 (206)
Q Consensus 178 V~~ak~ 183 (206)
|+|+++
T Consensus 161 v~~a~~ 166 (166)
T 3md3_A 161 INWAAK 166 (166)
T ss_dssp EEESCC
T ss_pred EEecCC
Confidence 999864
No 157
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=2.6e-16 Score=120.39 Aligned_cols=78 Identities=26% Similarity=0.435 Sum_probs=70.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
.++|||+|||.++++++|+++|+.||.|.++++..+. ++|||||+|.+.++|++|+..|||..+.+ +.|+|.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT---KTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC---ceEEEEe
Confidence 4799999999999999999999999999999998753 34799999999999999999999999955 6999999
Q ss_pred ccCcc
Q psy11527 181 AKTKM 185 (206)
Q Consensus 181 ak~~~ 185 (206)
++...
T Consensus 79 ~~~~~ 83 (167)
T 1fxl_A 79 ARPSS 83 (167)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 98654
No 158
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=2.4e-17 Score=111.29 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=63.7
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 107 ~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
+|||+|||.++++++|+++|++||.|.++++..+ .++|||||+|.+.++|++|+. +++..+.+ +.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g---~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGL---SKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTT---BCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECC---EEEEEEEC
Confidence 6999999999999999999999999999999765 357899999999999999997 58888854 69999875
No 159
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=2.3e-16 Score=121.09 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
++++|||+|||.++++++|+++|+.||.|.++++..+. ++|||||+|.+.++|++|+..|||..+.+ +.|+|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN---KRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC---cEEEEE
Confidence 35899999999999999999999999999999998752 45899999999999999999999999954 699999
Q ss_pred eccCcc
Q psy11527 180 YAKTKM 185 (206)
Q Consensus 180 ~ak~~~ 185 (206)
+++.+.
T Consensus 79 ~~~~~~ 84 (168)
T 1b7f_A 79 YARPGG 84 (168)
T ss_dssp ECCCCS
T ss_pred ecCCCc
Confidence 998654
No 160
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=2.5e-16 Score=121.54 Aligned_cols=82 Identities=13% Similarity=0.289 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC------CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK------GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~------~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
+.++|||+|||.++++++|+++|+.||.|.++++.++ .++|||||+|.+.++|++|+..|||..+.+..++.++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999999876 3467999999999999999999999988654467889
Q ss_pred EEeccCcc
Q psy11527 178 IEYAKTKM 185 (206)
Q Consensus 178 V~~ak~~~ 185 (206)
+.+++.+.
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 98877543
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.3e-16 Score=120.63 Aligned_cols=77 Identities=23% Similarity=0.371 Sum_probs=70.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
++|||+|||.++++++|+++|+.||.|.++++..+ .++|||||+|.+.++|++|+..|||..+.+ +.|+|+++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g---~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN---NIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC---CeeEEEEcC
Confidence 68999999999999999999999999999999876 356899999999999999999999999955 699999987
Q ss_pred Ccc
Q psy11527 183 TKM 185 (206)
Q Consensus 183 ~~~ 185 (206)
...
T Consensus 78 ~~~ 80 (166)
T 3md3_A 78 QSQ 80 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 162
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=2.6e-16 Score=121.42 Aligned_cols=79 Identities=18% Similarity=0.317 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
..++|||+||+.++++++|+++|+.||.|.++++..+ .++|||||+|.+.++|.+|+..|||..+.+..+++|+|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 5689999999999999999999999999999999876 2367999999999999999999999988753368999999
Q ss_pred cc
Q psy11527 181 AK 182 (206)
Q Consensus 181 ak 182 (206)
+.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 163
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-15 Score=110.41 Aligned_cols=81 Identities=12% Similarity=0.200 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCc-----------HHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecC
Q psy11527 102 MSPCSTLFVANLGQFVS-----------EQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLAS 170 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~t-----------e~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~ 170 (206)
..++++|+|.||-.... +++|+++|++||.|.+|.|.....+|||||+|.+.++|++|+..|||..+.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~- 90 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG- 90 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET-
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 34578999999954432 589999999999999998754467899999999999999999999999995
Q ss_pred CCCceEEEEeccCcc
Q psy11527 171 SDRGAIRIEYAKTKM 185 (206)
Q Consensus 171 ~~g~~l~V~~ak~~~ 185 (206)
|+.|+|++++.+.
T Consensus 91 --gr~l~v~~a~~~~ 103 (112)
T 2dit_A 91 --GRQITAQAWDGTT 103 (112)
T ss_dssp --TEECEEEECCSCC
T ss_pred --CcEEEEEEeCCCC
Confidence 5799999997753
No 164
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=5.8e-16 Score=129.17 Aligned_cols=81 Identities=26% Similarity=0.445 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH----HHhcCCCCeeEEEEecC-CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIK----DIFGSFPGFSRVRMHNK-GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAI 176 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~----~~F~~~G~v~~v~l~~~-~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l 176 (206)
..++++|||+||+.++++++|+ ++|+.||.|.+|++.++ ..+|||||+|.+.++|++|+..|||..+.+ +.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD---KPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC---cEE
Confidence 4567899999999999999977 89999999999998764 567999999999999999999999999965 699
Q ss_pred EEEeccCcc
Q psy11527 177 RIEYAKTKM 185 (206)
Q Consensus 177 ~V~~ak~~~ 185 (206)
+|+|++.+.
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997754
No 165
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=5.5e-17 Score=116.07 Aligned_cols=77 Identities=14% Similarity=0.233 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC---CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG---GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~---~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
..++|||+||+.++++++|+++|+.||.|.+|+|..+. .+|||||+|.+.++|++|+. +|..+.+ +.|+|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g---~~l~v~~ 82 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHG---KKLKLGP 82 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETT---EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECC---EEEEEEE
Confidence 45899999999999999999999999999999998763 45899999999999999997 9988854 6999999
Q ss_pred ccCcc
Q psy11527 181 AKTKM 185 (206)
Q Consensus 181 ak~~~ 185 (206)
+..+.
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 87653
No 166
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=6.1e-16 Score=137.87 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+.++|||+||+..+++++|+++|+.||.|+.|+|+.+ ..+|||||+|.+.++|.+||..|||..|.+ +.|+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g---r~i~ 175 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG---RRVL 175 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC---EEEE
Confidence 345689999999999999999999999999999999865 357899999999999999999999999955 6999
Q ss_pred EEeccCc
Q psy11527 178 IEYAKTK 184 (206)
Q Consensus 178 V~~ak~~ 184 (206)
|+|++.+
T Consensus 176 V~~a~~~ 182 (437)
T 3pgw_S 176 VDVERGR 182 (437)
T ss_pred EEEeCCC
Confidence 9999865
No 167
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.65 E-value=3e-16 Score=129.41 Aligned_cols=82 Identities=16% Similarity=0.256 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCC---------cHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecC--
Q psy11527 102 MSPCSTLFVANLGQFV---------SEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLAS-- 170 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~---------te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~-- 170 (206)
...+++|||+||+..+ +|++|+++|++||.|++|+|+. ++|||||+|.+.++|+.|+..|+|..|..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 4467899999999998 7999999999999999999986 57899999999999999999999999920
Q ss_pred -------CCCceEEEEeccCcc
Q psy11527 171 -------SDRGAIRIEYAKTKM 185 (206)
Q Consensus 171 -------~~g~~l~V~~ak~~~ 185 (206)
.+|+.|+|.||+.+.
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 025699999998754
No 168
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=1.9e-16 Score=118.54 Aligned_cols=76 Identities=12% Similarity=0.151 Sum_probs=65.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCee--EEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFS--RVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~--~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
...++|||+|||+++++++|+++|+.| .|+ +|+|+.+ +++|||||+|.+.++|++||. +++..|. ||.|+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~---gR~I~ 114 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIG---HRYIE 114 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBT---TBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEEC---CEEEE
Confidence 345799999999999999999999999 677 8998875 457899999999999999997 5778884 57999
Q ss_pred EEeccC
Q psy11527 178 IEYAKT 183 (206)
Q Consensus 178 V~~ak~ 183 (206)
|..+..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 169
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=3.4e-16 Score=127.45 Aligned_cols=79 Identities=33% Similarity=0.396 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 102 MSPCSTLFVANLGQ-FVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 102 ~~~~~~LfV~nL~~-~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
.+++++|||+||+. ++++++|+++|+.||.|.+|++..+. +|||||+|.+.++|++|+..|||..+.+ +.|+|++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g---~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHG---KPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSS---SBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEE
Confidence 34568999999999 99999999999999999999998764 8999999999999999999999999955 6999999
Q ss_pred ccCc
Q psy11527 181 AKTK 184 (206)
Q Consensus 181 ak~~ 184 (206)
++.+
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9764
No 170
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.65 E-value=9e-16 Score=120.96 Aligned_cols=80 Identities=24% Similarity=0.455 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...++|||+||+.++++++|+++|+.||.|.++++..+. .+|||||+|.+.++|.+|+..|||..+. |+.|+|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 188 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG---DKKLLV 188 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---CEEEEE
Confidence 456899999999999999999999999999999998762 3689999999999999999999999995 569999
Q ss_pred EeccCcc
Q psy11527 179 EYAKTKM 185 (206)
Q Consensus 179 ~~ak~~~ 185 (206)
++++.+.
T Consensus 189 ~~a~~~~ 195 (198)
T 2yh0_A 189 QRASVGA 195 (198)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9998753
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=8.5e-16 Score=122.70 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=72.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..++|||+||+.++++++|+++|+.||.|.++++..+ ..+|||||+|.+.++|.+|+..|||..|.+ +.|+|+
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g---~~i~V~ 200 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG---QYLRVG 200 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS---SBCEEE
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCC---cEEEEE
Confidence 4579999999999999999999999999999999876 336899999999999999999999999955 699999
Q ss_pred eccCcc
Q psy11527 180 YAKTKM 185 (206)
Q Consensus 180 ~ak~~~ 185 (206)
|++.+.
T Consensus 201 ~a~~~~ 206 (216)
T 2qfj_A 201 KAVTPP 206 (216)
T ss_dssp ECSSCS
T ss_pred EecCCC
Confidence 998764
No 172
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=1.2e-15 Score=117.08 Aligned_cols=78 Identities=22% Similarity=0.378 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...++|||+||+.++++++|+++|+.||.|.++++..+. .+|||||+|.+.++|.+|++.|||..+.+ +++.|+|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~~~l~V 165 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG-GSQPLSV 165 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT-CSSCCEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC-CCeEEEE
Confidence 346899999999999999999999999999999998753 35799999999999999999999999976 3579999
Q ss_pred Eec
Q psy11527 179 EYA 181 (206)
Q Consensus 179 ~~a 181 (206)
+||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 173
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7.8e-16 Score=112.62 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=60.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC-------CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCce
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-------GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGA 175 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~-------~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~ 175 (206)
...++|||+||+.++++++|+++|++||.|. +.++.+ ..+|||||+|.+.++|++|++.|++ + +|+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~---~G~~ 79 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E---DGKL 79 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E---TTEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c---CCcE
Confidence 3468999999999999999999999999999 777654 3478999999999999999999832 3 2335
Q ss_pred EEEEecc
Q psy11527 176 IRIEYAK 182 (206)
Q Consensus 176 l~V~~ak 182 (206)
|.+..+.
T Consensus 80 ~~~~~~~ 86 (114)
T 2dnl_A 80 YLCVSSP 86 (114)
T ss_dssp EEEECCS
T ss_pred EEeccCC
Confidence 5555443
No 174
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=118.79 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=66.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCe----eEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCce
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGF----SRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGA 175 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v----~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~ 175 (206)
...++|||+|||++++++||+++|+.||.| .+|+|+.+ +.+|||||+|.+.++|++||.. |+..+. +|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~---gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG---KRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS---SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC---CeE
Confidence 345799999999999999999999999975 68888765 3568999999999999999975 998884 469
Q ss_pred EEEEeccCc
Q psy11527 176 IRIEYAKTK 184 (206)
Q Consensus 176 l~V~~ak~~ 184 (206)
|+|..+..+
T Consensus 97 i~V~~a~~~ 105 (123)
T 2dha_A 97 IELFRSTAA 105 (123)
T ss_dssp ECCEEECHH
T ss_pred EEEEECCHH
Confidence 999887653
No 175
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.63 E-value=9.9e-16 Score=118.73 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
...++|||+||+.++++++|+++|+.||.|..+ ......+|||||+|.+.++|.+|+..|||..+. |+.|+|+|++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i~v~~a~ 172 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID---GRSVSLYYTG 172 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET---TEEEEEEECS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEEEecC
Confidence 456899999999999999999999999999877 222367899999999999999999999999995 4799999998
Q ss_pred Cc
Q psy11527 183 TK 184 (206)
Q Consensus 183 ~~ 184 (206)
.+
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 176
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=9.2e-16 Score=118.31 Aligned_cols=76 Identities=25% Similarity=0.476 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..++|||+||+.++++++|+++|++||.|.++++..+. ++|||||+|.+.++|.+|+..|||..+. |+.|+|+
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V~ 169 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG---DKKLLVQ 169 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC---CeEEEEE
Confidence 36899999999999999999999999999999998762 3689999999999999999999999995 4699999
Q ss_pred ecc
Q psy11527 180 YAK 182 (206)
Q Consensus 180 ~ak 182 (206)
||.
T Consensus 170 ~As 172 (172)
T 2g4b_A 170 RAS 172 (172)
T ss_dssp ECC
T ss_pred eCC
Confidence 973
No 177
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=9.4e-16 Score=120.67 Aligned_cols=82 Identities=12% Similarity=0.193 Sum_probs=68.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...++|||+||+.++++++|+++|+.||.|.++++..+ ..+|||||+|.+.++|.+|+.. +|..+. |+.|+|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~---G~~i~v 177 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN---GHNCEV 177 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEET---TEECEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEEC---CEEEEE
Confidence 34589999999999999999999999999999999876 2468999999999999999976 899995 469999
Q ss_pred EeccCccccc
Q psy11527 179 EYAKTKMAEF 188 (206)
Q Consensus 179 ~~ak~~~~~~ 188 (206)
.++..+....
T Consensus 178 ~~a~~k~~~~ 187 (196)
T 1l3k_A 178 RKALSKQEMA 187 (196)
T ss_dssp EECC------
T ss_pred EecCChhHhc
Confidence 9998765443
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=5.9e-16 Score=118.85 Aligned_cols=77 Identities=14% Similarity=0.246 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..++|||+||+.++++++|+++|+.||.|.++++..+ .++|||||+|.+.++|.+|++ ++|..+.+ +.|+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g---~~i~V~ 161 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD---RKIEIK 161 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS---SCEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC---eEEEEe
Confidence 3579999999999999999999999999999999875 356899999999999999997 89999954 699999
Q ss_pred eccCc
Q psy11527 180 YAKTK 184 (206)
Q Consensus 180 ~ak~~ 184 (206)
+++++
T Consensus 162 ~a~pk 166 (167)
T 2cjk_A 162 RAEPR 166 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99875
No 179
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=1e-15 Score=120.45 Aligned_cols=80 Identities=13% Similarity=0.205 Sum_probs=69.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
....++|||+|||.++++++|+++|+.||.|.+|+++.+. ++|||||+|.+.++|++|+.. ++..+.+ +.|+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g---~~l~ 85 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG---RVVE 85 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT---EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC---EEee
Confidence 4457899999999999999999999999999999998762 467999999999999999965 9999954 6999
Q ss_pred EEeccCcc
Q psy11527 178 IEYAKTKM 185 (206)
Q Consensus 178 V~~ak~~~ 185 (206)
|.++..+.
T Consensus 86 v~~~~~~~ 93 (196)
T 1l3k_A 86 PKRAVSRE 93 (196)
T ss_dssp EEECCC--
T ss_pred eecccCcc
Confidence 99987653
No 180
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=7.8e-16 Score=121.87 Aligned_cols=76 Identities=34% Similarity=0.429 Sum_probs=70.4
Q ss_pred CCEEEEcCCCC-CCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 105 CSTLFVANLGQ-FVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 105 ~~~LfV~nL~~-~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
+++|||+|||. ++++++|+++|+.||.|.+|++..+. +|||||+|.+.++|++|+..|||..+.+ +.|+|++++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g---~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHG---KPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSS---CCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecC---eEEEEEEecC
Confidence 57999999999 99999999999999999999998754 8899999999999999999999999955 6999999976
Q ss_pred c
Q psy11527 184 K 184 (206)
Q Consensus 184 ~ 184 (206)
+
T Consensus 79 ~ 79 (198)
T 1qm9_A 79 Q 79 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 181
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=1.9e-15 Score=120.66 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..++|||+||+.++++++|+++|+.||.|.+|+++++ ..+|||||+|.+.++|++|+..|||..+.+ +.|+|.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g---~~l~v~ 103 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG---RNIKVG 103 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC----CCCEEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC---eeEEEe
Confidence 4589999999999999999999999999999999875 367899999999999999999999999955 599999
Q ss_pred eccCcc
Q psy11527 180 YAKTKM 185 (206)
Q Consensus 180 ~ak~~~ 185 (206)
++....
T Consensus 104 ~~~~~~ 109 (216)
T 2qfj_A 104 RPSNIG 109 (216)
T ss_dssp CCSCCG
T ss_pred cCCCcc
Confidence 887653
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=4.2e-15 Score=107.71 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=67.2
Q ss_pred CCCEEEEcCCCC-----CCcHHHHHHHhcCCCCeeEEEEecC-----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCC
Q psy11527 104 PCSTLFVANLGQ-----FVSEQEIKDIFGSFPGFSRVRMHNK-----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDR 173 (206)
Q Consensus 104 ~~~~LfV~nL~~-----~~te~~L~~~F~~~G~v~~v~l~~~-----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g 173 (206)
++++|+|.||-. +-++++|+++|++||.|.+|+|..+ .++||+||+|.+.++|.+|+..|||..+ +|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~---~G 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF---GG 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE---TT
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE---CC
Confidence 468999999963 2368999999999999999999874 3579999999999999999999999999 45
Q ss_pred ceEEEEeccC
Q psy11527 174 GAIRIEYAKT 183 (206)
Q Consensus 174 ~~l~V~~ak~ 183 (206)
|.|+|+++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 7999999875
No 183
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=8.7e-16 Score=114.76 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=66.2
Q ss_pred CEEEEcCC----CCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCC----HHH----HHHHHH--HhCCCe
Q psy11527 106 STLFVANL----GQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTD----VNF----AIQAMS--NLNGSY 167 (206)
Q Consensus 106 ~~LfV~nL----~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~----~~~----A~~Al~--~Lng~~ 167 (206)
++|||+|| ++.+++++|+++|+.||+|.+++++.| .++|||||+|.| .++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999987 457899999996 333 888988 789999
Q ss_pred ecCCCCceEEEEeccCc
Q psy11527 168 LASSDRGAIRIEYAKTK 184 (206)
Q Consensus 168 i~~~~g~~l~V~~ak~~ 184 (206)
| +||.|+|++.+..
T Consensus 83 I---~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 I---MGFKFEVILNKHS 96 (136)
T ss_dssp E---TTEEEEEEECCTT
T ss_pred e---cCcEEEEEECccc
Confidence 9 5579999998754
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=3.6e-15 Score=121.35 Aligned_cols=80 Identities=25% Similarity=0.409 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCC-CeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFP-GFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G-~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
.+++++|||+||+.++++++|+++|+.|| .|.+++++. .++|||||+|.+.++|.+|+..|||..+.+ |+.|+|+|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~--g~~l~v~~ 224 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ-KDRKMALIQMGSVEEAVQALIDLHNHDLGE--NHHLRVSF 224 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS-SSTTCEEEEESSHHHHHHHHHHHTTCBSSS--SCBCEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE-CCCcEEEEEECCHHHHHHHHHHHCCCccCC--CCeEEEEE
Confidence 34578999999999999999999999999 999999975 367899999999999999999999999951 57999999
Q ss_pred ccCc
Q psy11527 181 AKTK 184 (206)
Q Consensus 181 ak~~ 184 (206)
++++
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9864
No 185
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=3e-15 Score=114.45 Aligned_cols=77 Identities=21% Similarity=0.377 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..++|||+||+..+++++|+++|+.||.|.++++..+. ++|||||+|.+.++|.+|++.|||..+.+. ..+|+|+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~~~i~v~ 165 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA-TEPITVK 165 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC-SSCCEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC-ccceEEE
Confidence 45799999999999999999999999999999998753 368999999999999999999999999763 3468988
Q ss_pred ec
Q psy11527 180 YA 181 (206)
Q Consensus 180 ~a 181 (206)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 186
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=2.7e-15 Score=118.78 Aligned_cols=80 Identities=26% Similarity=0.427 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCC-CeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFP-GFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G-~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
.+++++|||+||+..+++++|+++|+.|| .|.+++++.+ .+|||||+|.+.++|.+|+..|||..+.+ |+.|+|.|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~--g~~l~v~~ 193 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGE--NHHLRVSF 193 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSS--CCSCCEEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCC--CCeEEEEe
Confidence 34578999999999999999999999999 9999999764 58999999999999999999999999951 57999999
Q ss_pred ccCc
Q psy11527 181 AKTK 184 (206)
Q Consensus 181 ak~~ 184 (206)
++++
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9864
No 187
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.59 E-value=1.9e-15 Score=121.66 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcCCCCe--eEEEEecC--CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCC-CceEE
Q psy11527 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGF--SRVRMHNK--GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSD-RGAIR 177 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~te~~L~~~F~~~G~v--~~v~l~~~--~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~-g~~l~ 177 (206)
+++++|||+||++++++++|+++|++||.| .++++..+ +.+|||||+|.+.++|.+||..|||..|.+.+ .+++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 457899999999999999999999999999 89999876 34589999999999999999999999997753 34666
Q ss_pred EEec
Q psy11527 178 IEYA 181 (206)
Q Consensus 178 V~~a 181 (206)
|.|+
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 6664
No 188
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.59 E-value=6.8e-15 Score=122.05 Aligned_cols=78 Identities=27% Similarity=0.408 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
....++|||+|||.++++++|+++|+.||.|.+|++.+ ++|||||+|.+.++|.+|+..|||..+.+ +.|+|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g---~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKS---RPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETT---EECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECC---ceeEeeec
Confidence 34568999999999999999999999999999999965 57899999999999999999999999955 69999998
Q ss_pred cCc
Q psy11527 182 KTK 184 (206)
Q Consensus 182 k~~ 184 (206)
...
T Consensus 94 ~~~ 96 (261)
T 3sde_A 94 THG 96 (261)
T ss_dssp CCS
T ss_pred ccC
Confidence 753
No 189
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=5.2e-15 Score=118.16 Aligned_cols=76 Identities=8% Similarity=0.127 Sum_probs=67.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEec
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYA 181 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~a 181 (206)
.++|||+|||.++++++|+++|+.||.|.+|+|.++ ..+|||||+|.+.++|++|+..++ ..+. |+.|+|.++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~---Gr~l~V~~~ 184 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYK---ETDLLILFK 184 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEET---TEECEEEET
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeEC---CEEEEEEEh
Confidence 589999999999999999999999999999999875 356899999999999999997665 5774 579999998
Q ss_pred cCc
Q psy11527 182 KTK 184 (206)
Q Consensus 182 k~~ 184 (206)
+.-
T Consensus 185 ~~y 187 (193)
T 2voo_A 185 DDY 187 (193)
T ss_dssp TTC
T ss_pred HHH
Confidence 764
No 190
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.58 E-value=5e-15 Score=128.01 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=69.2
Q ss_pred CCCCCEEEEcC--CCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCc--eEE
Q psy11527 102 MSPCSTLFVAN--LGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRG--AIR 177 (206)
Q Consensus 102 ~~~~~~LfV~n--L~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~--~l~ 177 (206)
..++++|||+| |+..++|++|+++|++||.|++|++.. +||||||+|.+.++|++|++.|||..+.+..|+ .|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 44578999999 578899999999999999999998854 789999999999999999999999999654345 678
Q ss_pred EEeccC
Q psy11527 178 IEYAKT 183 (206)
Q Consensus 178 V~~ak~ 183 (206)
|.|.+.
T Consensus 93 ~~~~~~ 98 (345)
T 3tht_A 93 LNFVEK 98 (345)
T ss_dssp EEECSS
T ss_pred EEEeec
Confidence 888853
No 191
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.56 E-value=5.8e-15 Score=113.27 Aligned_cols=76 Identities=12% Similarity=0.279 Sum_probs=66.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC----CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~----~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
+.++|||+|||.++++++|+++|+.||.|.+|++.++ .++|||||+|.+.++|++|+.. +..+. |+.|+|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~---g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILD---GKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEET---TEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccC---CeEcccc
Confidence 3589999999999999999999999999999999875 4568999999999999999974 56674 4688888
Q ss_pred eccCc
Q psy11527 180 YAKTK 184 (206)
Q Consensus 180 ~ak~~ 184 (206)
++..+
T Consensus 77 ~~~~~ 81 (167)
T 2cjk_A 77 RAIPR 81 (167)
T ss_dssp ECCCH
T ss_pred cccch
Confidence 87654
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.56 E-value=1e-14 Score=121.73 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCC-cHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 103 SPCSTLFVANLGQFV-SEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 103 ~~~~~LfV~nL~~~~-te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
...++|||+||+.++ ++++|+++|+.||.|.+++|..+ .++|||||+|.+.++|.+|+..|||..+. |+.|+|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v 258 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG---GSHLRV 258 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC---CeEEEE
Confidence 456899999999995 99999999999999999999875 34689999999999999999999999994 569999
Q ss_pred EeccCccc
Q psy11527 179 EYAKTKMA 186 (206)
Q Consensus 179 ~~ak~~~~ 186 (206)
.|++.+..
T Consensus 259 ~~a~~~~~ 266 (284)
T 3smz_A 259 SFCAPGPP 266 (284)
T ss_dssp EECCSSSC
T ss_pred EEecCCCc
Confidence 99987644
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.55 E-value=8.7e-15 Score=122.56 Aligned_cols=79 Identities=19% Similarity=0.338 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhcCCCCeeEEEEecCC-----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCce
Q psy11527 102 MSPCSTLFVANLGQF-VSEQEIKDIFGSFPGFSRVRMHNKG-----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGA 175 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~-~te~~L~~~F~~~G~v~~v~l~~~~-----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~ 175 (206)
....++|||+||+.. +++++|+++|+.||.|.+|++..+. .+|||||+|.+.++|.+|+ .|||..+. |+.
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~---g~~ 282 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG---NRE 282 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEET---TEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC---CcE
Confidence 345689999999999 9999999999999999999998753 3689999999999999999 99999995 469
Q ss_pred EEEEeccCc
Q psy11527 176 IRIEYAKTK 184 (206)
Q Consensus 176 l~V~~ak~~ 184 (206)
|+|.|++++
T Consensus 283 i~V~~a~~k 291 (292)
T 2ghp_A 283 ISVSLADKK 291 (292)
T ss_dssp EEEEECCCC
T ss_pred EEEEEecCC
Confidence 999999875
No 194
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.54 E-value=1.9e-14 Score=113.35 Aligned_cols=75 Identities=21% Similarity=0.362 Sum_probs=66.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCC----C-------CeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCC
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSF----P-------GFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSD 172 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~----G-------~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~ 172 (206)
..++|||+|||.++++++|+++|+.| | .|.++++. .++|||||+|.+.++|++|+ .|||..+.+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~--~~~g~afV~F~~~~~A~~Al-~l~g~~~~g-- 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIFQG-- 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE--TTTTEEEEEESCSHHHHHHG-GGTTEEETT--
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec--CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC--
Confidence 35899999999999999999999999 5 67777774 46899999999999999999 899999955
Q ss_pred CceEEEEeccCc
Q psy11527 173 RGAIRIEYAKTK 184 (206)
Q Consensus 173 g~~l~V~~ak~~ 184 (206)
+.|+|++++..
T Consensus 78 -~~i~v~~~~~~ 88 (198)
T 2yh0_A 78 -QSLKIRRPHDY 88 (198)
T ss_dssp -EEEEEECCCCC
T ss_pred -ceEEEeCCCCC
Confidence 69999998765
No 195
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=1.7e-14 Score=111.16 Aligned_cols=75 Identities=21% Similarity=0.382 Sum_probs=67.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCC----C-------CeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCC
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSF----P-------GFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSD 172 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~----G-------~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~ 172 (206)
+.++|||+|||.++++++|+++|+.| | .|.++++.. ++|||||+|.+.++|++|+ .|||..+.+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g-- 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG-- 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETT--
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecC--
Confidence 45899999999999999999999999 6 788888754 6899999999999999999 999999955
Q ss_pred CceEEEEeccCc
Q psy11527 173 RGAIRIEYAKTK 184 (206)
Q Consensus 173 g~~l~V~~ak~~ 184 (206)
+.|+|++++..
T Consensus 78 -~~i~v~~~~~~ 88 (172)
T 2g4b_A 78 -QSLKIRRPHDY 88 (172)
T ss_dssp -EECEEECCSSC
T ss_pred -ceeeecCCccc
Confidence 69999998754
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=3.1e-14 Score=118.06 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHh-CCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNL-NGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~L-ng~~i~~~~g~~l~V~ 179 (206)
++++|||+||+..+++++|+++|+.||.|.+|++..+ .++|||||+|.+.++|.+|+..| +|..+....+++|+|+
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 3579999999999999999999999999999999876 34689999999999999999999 5666554346899999
Q ss_pred eccCcc
Q psy11527 180 YAKTKM 185 (206)
Q Consensus 180 ~ak~~~ 185 (206)
+++...
T Consensus 175 ~~~~~~ 180 (261)
T 3sde_A 175 PMEQFD 180 (261)
T ss_dssp ECCCEE
T ss_pred eccccC
Confidence 998754
No 197
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.53 E-value=4.1e-15 Score=115.21 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=66.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEe---cCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMH---NKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~---~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
..+.++|||+|||.++++++|+++|+.||.+..+.+. ...++|||||+|.+.++|++|+ .|||..+.+ +.|+|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~v 85 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFG---NEIKL 85 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETT---EEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCC---eEEEE
Confidence 4456899999999999999999999999876552221 1267899999999999999999 599999965 69999
Q ss_pred EeccCcc
Q psy11527 179 EYAKTKM 185 (206)
Q Consensus 179 ~~ak~~~ 185 (206)
.+++.+.
T Consensus 86 ~~~~~~~ 92 (175)
T 1fje_B 86 EKPKGRD 92 (175)
T ss_dssp ECCCCSS
T ss_pred ecCCCcc
Confidence 9998654
No 198
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.52 E-value=4.4e-14 Score=117.78 Aligned_cols=75 Identities=16% Similarity=0.237 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
+.++|||+|||.++++++|+++|+.|| |.++++ ..++|||||+|.+.++|++|+..|||..+.+ +.|+|+++..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g---~~i~v~~~~~ 94 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV--DKYKGTAFVTLLNGEQAEAAINAFHQSRLRE---RELSVQLQPT 94 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE--ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCC---eEEEEEecCC
Confidence 468999999999999999999999999 999988 4578999999999999999999999999955 6999999764
Q ss_pred c
Q psy11527 184 K 184 (206)
Q Consensus 184 ~ 184 (206)
.
T Consensus 95 ~ 95 (284)
T 3smz_A 95 D 95 (284)
T ss_dssp S
T ss_pred C
Confidence 3
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=5.3e-14 Score=101.84 Aligned_cols=79 Identities=18% Similarity=0.316 Sum_probs=66.7
Q ss_pred CCCCEEEEcCC--CCCCc--------HHHHHHHhcCCCCeeEEEEecC------CCCCEEEEEeCCHHHHHHHHHHhCCC
Q psy11527 103 SPCSTLFVANL--GQFVS--------EQEIKDIFGSFPGFSRVRMHNK------GGSPVAFIEYTDVNFAIQAMSNLNGS 166 (206)
Q Consensus 103 ~~~~~LfV~nL--~~~~t--------e~~L~~~F~~~G~v~~v~l~~~------~~~g~aFV~f~~~~~A~~Al~~Lng~ 166 (206)
.+++.|.+.|+ +.++. ++||++.|++||.|.+|+|.++ .++||+||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35689999998 33332 3689999999999999999875 25799999999999999999999999
Q ss_pred eecCCCCceEEEEeccCc
Q psy11527 167 YLASSDRGAIRIEYAKTK 184 (206)
Q Consensus 167 ~i~~~~g~~l~V~~ak~~ 184 (206)
.+ +||.|+|+|....
T Consensus 83 ~f---~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KF---ANRVVVTKYCDPD 97 (105)
T ss_dssp EE---TTEECEEEEECHH
T ss_pred Ee---CCCEEEEEEeCHH
Confidence 99 4579999997653
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.5e-13 Score=96.79 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=62.6
Q ss_pred CCEEEEcCCC-------CCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEE
Q psy11527 105 CSTLFVANLG-------QFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIR 177 (206)
Q Consensus 105 ~~~LfV~nL~-------~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~ 177 (206)
..+|-|.-.. .++++++|+++|++||.|.+|+|.. ..+|||||+|.+.++|+.|++.+++ +. ++.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~---g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LV---DNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CS---SSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CC---CCeEE
Confidence 3466665433 4689999999999999999999984 6889999999999999999988665 33 46999
Q ss_pred EEeccCccc
Q psy11527 178 IEYAKTKMA 186 (206)
Q Consensus 178 V~~ak~~~~ 186 (206)
|+|++.+..
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999987653
No 201
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.48 E-value=7.9e-14 Score=116.69 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCC-CeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFP-GFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G-~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
..++|||+|||.++++++|+++|+.|| .|.+|++..+ ..+|||||+|.+.++|.+|+..|||..+.+ +.|+|.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG---YTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC---cEEEEE
Confidence 468999999999999999999999999 9999999875 367999999999999999999999999954 699999
Q ss_pred eccCcc
Q psy11527 180 YAKTKM 185 (206)
Q Consensus 180 ~ak~~~ 185 (206)
++..+.
T Consensus 193 ~a~~~~ 198 (292)
T 2ghp_A 193 VSNPLE 198 (292)
T ss_dssp ECCCC-
T ss_pred ECCCCc
Confidence 987654
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.46 E-value=2.7e-14 Score=103.15 Aligned_cols=69 Identities=14% Similarity=0.259 Sum_probs=59.4
Q ss_pred EcCCCCCCcHHHHHHHh------------cCCCCeeEEEEecC---CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCc
Q psy11527 110 VANLGQFVSEQEIKDIF------------GSFPGFSRVRMHNK---GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRG 174 (206)
Q Consensus 110 V~nL~~~~te~~L~~~F------------~~~G~v~~v~l~~~---~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~ 174 (206)
+.+|+..+++++|++.| ++||.|.+|+|.++ .++|||||+|.+.++|.+|+..|||..+. ||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~---Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN---GQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET---TE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC---CE
Confidence 56777777888777666 99999999999876 35799999999999999999999999994 57
Q ss_pred eEEEEec
Q psy11527 175 AIRIEYA 181 (206)
Q Consensus 175 ~l~V~~a 181 (206)
.|+|+|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.45 E-value=5.2e-13 Score=98.08 Aligned_cols=76 Identities=12% Similarity=0.232 Sum_probs=64.9
Q ss_pred CCEEEEcCCCCCC----------cHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCc
Q psy11527 105 CSTLFVANLGQFV----------SEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRG 174 (206)
Q Consensus 105 ~~~LfV~nL~~~~----------te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~ 174 (206)
++.|.+.|+=..- -++||++.|++||.|.+|.|.++..+||+||+|.+.++|.+|++.|||..+ +||
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f---~GR 83 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWF---AGK 83 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEE---TTE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEE---CCE
Confidence 5688888873221 235889999999999999998877789999999999999999999999999 457
Q ss_pred eEEEEeccC
Q psy11527 175 AIRIEYAKT 183 (206)
Q Consensus 175 ~l~V~~ak~ 183 (206)
.|+|+|+..
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999999864
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.43 E-value=5.9e-13 Score=98.35 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=65.7
Q ss_pred CCCEEEEcCCCC--C---CcHHHHHHHhcCCCCeeEEEEecCC--------CCCEEEEEeCCHHHHHHHHHHhCCCeecC
Q psy11527 104 PCSTLFVANLGQ--F---VSEQEIKDIFGSFPGFSRVRMHNKG--------GSPVAFIEYTDVNFAIQAMSNLNGSYLAS 170 (206)
Q Consensus 104 ~~~~LfV~nL~~--~---~te~~L~~~F~~~G~v~~v~l~~~~--------~~g~aFV~f~~~~~A~~Al~~Lng~~i~~ 170 (206)
++++|++.|+-. + --++||++.|++||.|.+|+|..+. ++||+||+|.+.++|.+|++.|||..+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 468999999842 1 2368999999999999999998752 248999999999999999999999999
Q ss_pred CCCceEEEEeccC
Q psy11527 171 SDRGAIRIEYAKT 183 (206)
Q Consensus 171 ~~g~~l~V~~ak~ 183 (206)
+||.|+|+|...
T Consensus 97 -~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 -AGRKVVAEVYDQ 108 (118)
T ss_dssp -TTEECEEEEECH
T ss_pred -CCcEEEEEEcCh
Confidence 457999999864
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2.9e-12 Score=89.87 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=64.8
Q ss_pred CCCCCEEEEcCCCC----C-CcH---HHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCC
Q psy11527 102 MSPCSTLFVANLGQ----F-VSE---QEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDR 173 (206)
Q Consensus 102 ~~~~~~LfV~nL~~----~-~te---~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g 173 (206)
+++..||+|...+. + ..+ .+|.+.|++||.|..+++..+ .+||+|.+.++|.+|+. |||..+. |
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v~---G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKELL---N 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEET---T
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEeC---C
Confidence 45567999987762 2 332 579999999999999999875 38999999999999997 9999994 5
Q ss_pred ceEEEEeccCcccc
Q psy11527 174 GAIRIEYAKTKMAE 187 (206)
Q Consensus 174 ~~l~V~~ak~~~~~ 187 (206)
|.|+|+++++++.+
T Consensus 76 r~LkV~lkt~dW~~ 89 (91)
T 2dnr_A 76 RTITIALKSPSGPS 89 (91)
T ss_dssp EEEEEEECCCSSCS
T ss_pred eEEEEEeCCCCccc
Confidence 79999999987654
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=6.5e-11 Score=87.62 Aligned_cols=77 Identities=9% Similarity=0.057 Sum_probs=66.2
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCC-HHHHHHHHHHhC--CCeecCCCCceEE
Q psy11527 102 MSPCSTLFVANLGQF-VSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTD-VNFAIQAMSNLN--GSYLASSDRGAIR 177 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~-~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~-~~~A~~Al~~Ln--g~~i~~~~g~~l~ 177 (206)
.+.++.|||+||+.+ +++++|+++|+.||.|..|++..+. ..|||.|.+ .++|..|+..|| |..|.+ ..++
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~--~tgfVrf~~~~~~A~~av~~ln~~~~~i~g---~~~~ 89 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA--KEGIILFKEKAKEALGKAKDANNGNLQLRN---KEVT 89 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC--SEEEEEESSCHHHHHHHHHHTTTSCBCTTS---SSEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CEEEEEECCChHHHHHHHHHhhcCCcEEeC---cEEE
Confidence 566889999999999 9999999999999999999997643 389999999 899999999995 666654 4888
Q ss_pred EEeccC
Q psy11527 178 IEYAKT 183 (206)
Q Consensus 178 V~~ak~ 183 (206)
++....
T Consensus 90 ~evL~G 95 (121)
T 1owx_A 90 WEVLEG 95 (121)
T ss_dssp EEECCH
T ss_pred EEECCC
Confidence 887654
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.3e-10 Score=81.96 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=61.4
Q ss_pred CCCCCEEEEcCCCCC------CcH---HHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCC
Q psy11527 102 MSPCSTLFVANLGQF------VSE---QEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSD 172 (206)
Q Consensus 102 ~~~~~~LfV~nL~~~------~te---~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~ 172 (206)
+++..||+|..++.. ..+ .+|.+.|..||.|..+++..++ +||+|.+.++|.+||. |||..+.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~--- 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVK--- 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEET---
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeC---
Confidence 556679999988643 232 4689999999999999998863 9999999999999997 9999994
Q ss_pred CceEEEEecc
Q psy11527 173 RGAIRIEYAK 182 (206)
Q Consensus 173 g~~l~V~~ak 182 (206)
||.|+|++..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 5799999854
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.90 E-value=2.6e-09 Score=86.10 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=56.1
Q ss_pred CcHHHHHHHhcCCCCeeEEEEecC--------CCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEeccC
Q psy11527 117 VSEQEIKDIFGSFPGFSRVRMHNK--------GGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKT 183 (206)
Q Consensus 117 ~te~~L~~~F~~~G~v~~v~l~~~--------~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak~ 183 (206)
-.+++|++.|++||.|.+++|.++ .++|++||+|.+.++|.+|++.|||..+. ||.|+++|...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~---gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA---GRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS---SSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC---CeEEEEEEcCH
Confidence 356789999999999999999753 35689999999999999999999999994 57999999764
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.58 E-value=2.3e-07 Score=66.84 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=65.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCC-----CCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEE
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSF-----PGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIE 179 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~-----G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~ 179 (206)
.++|-+-|||.++++..|+.+.+.+ |.|+.+.+..|. +-|+|+|.|...|-+|.-.|||..+. ||.|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH--~GAivef~d~~~AgKasLaL~G~ef~---gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF--NGAIIIFRDSKFAAKMLMILNGSQFQ---GKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT--TEEEEECSCHHHHHHHHHHHSSEEET---TEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC--CceEEEEccchhhHHHHhhcCCeeec---CeEEEec
Confidence 5899999999999999999999999 999999998753 47999999999999999999999994 5799986
Q ss_pred ecc
Q psy11527 180 YAK 182 (206)
Q Consensus 180 ~ak 182 (206)
-.+
T Consensus 96 Tv~ 98 (117)
T 2l9w_A 96 TIN 98 (117)
T ss_dssp CHH
T ss_pred CHH
Confidence 443
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.99 E-value=1.6e-05 Score=56.69 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=62.1
Q ss_pred CEEEEcCCCCCC-cH----HHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 106 STLFVANLGQFV-SE----QEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 106 ~~LfV~nL~~~~-te----~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
++|+|.||+.++ .. +.++.+|..|+++.....++. -.-..|.|.+.++|.+|-..||+..+.|+ .|||-|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS--FRRirv~F~~~~~A~~AR~~Lh~~~f~g~---~~r~YF 80 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS--FKRVRINFSNPLSAADARLRLHKTEFLGK---EMKLYF 80 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT--TTEEEEECSSTTHHHHHHHTSTTSEETTE---ECEEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc--ceEEEEEeCChHHHHHHHHHhccceecCc---eeEEEe
Confidence 689999998865 32 467899999999998887753 23568999999999999999999999765 999999
Q ss_pred ccCc
Q psy11527 181 AKTK 184 (206)
Q Consensus 181 ak~~ 184 (206)
+...
T Consensus 81 gq~~ 84 (104)
T 1wey_A 81 AQTL 84 (104)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8743
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.59 E-value=0.001 Score=46.30 Aligned_cols=77 Identities=12% Similarity=0.248 Sum_probs=59.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCC------CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCce--EE
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG------GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGA--IR 177 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~------~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~--l~ 177 (206)
++|-|.+||+.+||+++.+.++....+.-...+..+ .-.-|||.|.+.+++..-.+.++|+.+.+..|.. -.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 578999999999999999999999877665554421 1138999999999999999999999987642322 24
Q ss_pred EEecc
Q psy11527 178 IEYAK 182 (206)
Q Consensus 178 V~~ak 182 (206)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 56654
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.46 E-value=0.00068 Score=47.68 Aligned_cols=54 Identities=13% Similarity=0.237 Sum_probs=45.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhC
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLN 164 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Ln 164 (206)
..++| +.|.+....||.++|+.||.|. |+.+.|. -|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 56666 9999999999999999999654 5555443 79999999999999998774
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.0021 Score=45.63 Aligned_cols=69 Identities=9% Similarity=0.013 Sum_probs=53.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcC-C----CCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEE
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGS-F----PGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~-~----G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V 178 (206)
-.++|.|.|||++++++.|+-+|+. - |.|.+++... +-|+|+|.+.+.|++.|+. ..+.+.+ .+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~---~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHG---AQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSS---SBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecC---eEEEE
Confidence 3579999999999999999999986 1 5888888754 5799999999999998854 2344543 36677
Q ss_pred Ee
Q psy11527 179 EY 180 (206)
Q Consensus 179 ~~ 180 (206)
.-
T Consensus 79 ~P 80 (104)
T 2dhx_A 79 RP 80 (104)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.39 E-value=0.00028 Score=49.78 Aligned_cols=54 Identities=13% Similarity=0.244 Sum_probs=45.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhC
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLN 164 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Ln 164 (206)
..++| +.|.+....||.++|+.||.| .|+.+.|. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 35666 999999999999999999954 45555444 79999999999999998875
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.21 E-value=0.0023 Score=46.67 Aligned_cols=73 Identities=15% Similarity=0.076 Sum_probs=56.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEecc
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAK 182 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ak 182 (206)
..+-|-|-+.++.. ...+.+.|++||.|.+... ......-.|.|+++.+|++|| ..||..+.+ +.-|-|....
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g--~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKAL-SKDGRIFGE--SIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHH-TTTTCEETT--TEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHH-HhCCeEecC--CEEEEEEECC
Confidence 34788899998885 5667778999999998887 345569999999999999999 679999964 2345555543
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.84 E-value=0.00048 Score=61.40 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=41.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHH
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAM 160 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al 160 (206)
.++|||. .+.++++.+|.++|++||.|.++.+..+ .+.|+.|||.+.+++..++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-FGLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-SSEEEEEECC---CCHHHH
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-CCeEEEEEeCCHHHHHHHH
Confidence 4899997 7899999999999999999999988652 3359999999999988665
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.22 E-value=0.016 Score=40.70 Aligned_cols=78 Identities=10% Similarity=0.187 Sum_probs=55.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecC-C-----CCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCc--eE
Q psy11527 105 CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-G-----GSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRG--AI 176 (206)
Q Consensus 105 ~~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~-~-----~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~--~l 176 (206)
+-+|-|..||+.+||+++.+.++..-++.-...+.. . .-.-|||.|.+.++...=.+.++|..+.+..|. +-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 358999999999999998888876655322221111 1 113789999999999999999999998764232 33
Q ss_pred EEEecc
Q psy11527 177 RIEYAK 182 (206)
Q Consensus 177 ~V~~ak 182 (206)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 456653
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.45 E-value=0.016 Score=43.24 Aligned_cols=34 Identities=9% Similarity=-0.084 Sum_probs=26.9
Q ss_pred EEEecC--CCCCEEEEEeCCHHHHHHHHHHhCCCee
Q psy11527 135 VRMHNK--GGSPVAFIEYTDVNFAIQAMSNLNGSYL 168 (206)
Q Consensus 135 v~l~~~--~~~g~aFV~f~~~~~A~~Al~~Lng~~i 168 (206)
++|..+ ..+|||||+|.+.++|++|+..+++...
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~ 38 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNG 38 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCC
Confidence 445444 5679999999999999999988876443
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.72 E-value=0.043 Score=40.54 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=51.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEE-EEec---------------C--CCCCEEEEEeCCHHHHHHHHHHhCCCe
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRV-RMHN---------------K--GGSPVAFIEYTDVNFAIQAMSNLNGSY 167 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v-~l~~---------------~--~~~g~aFV~f~~~~~A~~Al~~Lng~~ 167 (206)
.-|.|-+.|+.. ...+-+.|++||.|.+- .+.+ . .+...-.|+|++..+|.+|| .-||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 467777887774 45566789999998762 1111 0 12357799999999999999 789999
Q ss_pred ecCCCCceEEEEecc
Q psy11527 168 LASSDRGAIRIEYAK 182 (206)
Q Consensus 168 i~~~~g~~l~V~~ak 182 (206)
+.+ .-|-|...+
T Consensus 86 i~G---~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNG---VLLGVIPYT 97 (132)
T ss_dssp ETT---EECEEEECC
T ss_pred eCc---EEEEEEECC
Confidence 954 477776654
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.63 E-value=0.028 Score=41.69 Aligned_cols=40 Identities=15% Similarity=0.023 Sum_probs=35.2
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHh-CCCeecCCCCceEEEEeccCc
Q psy11527 141 GGSPVAFIEYTDVNFAIQAMSNL-NGSYLASSDRGAIRIEYAKTK 184 (206)
Q Consensus 141 ~~~g~aFV~f~~~~~A~~Al~~L-ng~~i~~~~g~~l~V~~ak~~ 184 (206)
.-+|+++|+|.+.++|++|+..+ ||..+ +| .|++++++.+
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~---~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGV---DG-EWTYDDATKT 51 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTC---CC-EEEEETTTTE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCC---CC-ceecccccCc
Confidence 45689999999999999999999 99999 45 9999988764
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.67 E-value=0.28 Score=44.00 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=45.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCC
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNG 165 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng 165 (206)
..++|+ ++..+...+|.++|+.||.| +|+.+.+ ..|||.|.+.+.|..+++.++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd---t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD---TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS---SEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC---CeEEEEECCHHHHHHHHHHHHh
Confidence 467776 88889999999999999964 4555433 3899999999999999998853
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=75.68 E-value=7.4 Score=24.93 Aligned_cols=68 Identities=6% Similarity=0.223 Sum_probs=42.3
Q ss_pred EEEEcC-CCCCCcHHHHHHHhcCCCC-----eeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCeecCCCCceEEEEe
Q psy11527 107 TLFVAN-LGQFVSEQEIKDIFGSFPG-----FSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180 (206)
Q Consensus 107 ~LfV~n-L~~~~te~~L~~~F~~~G~-----v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~i~~~~g~~l~V~~ 180 (206)
+|||.. =...+...+|..++..-+. |-.+++.. .|.||+-.. +.+..++..|++..+.+ +.++|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d----~~s~v~v~~-~~~~~~~~~l~~~~i~g---~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD----NASYVEILN-GKGPHVLKVMKNTTVKG---KQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS----SCEEEEECT-TCHHHHHHHHTTCCC------CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC----CcEEEEECH-HHHHHHHHHhccccCcC---ceEEEEE
Confidence 567732 2234677777777765554 44566643 389998765 55788899999998865 4888877
Q ss_pred cc
Q psy11527 181 AK 182 (206)
Q Consensus 181 ak 182 (206)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 223
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=59.97 E-value=2.1 Score=31.87 Aligned_cols=28 Identities=7% Similarity=-0.001 Sum_probs=18.7
Q ss_pred HHHHHHhcCCCCeeEEEEecCCCCCEEEEEeC
Q psy11527 120 QEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYT 151 (206)
Q Consensus 120 ~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~ 151 (206)
+|+.++|...|.|+.. +..+||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwf----n~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF----NVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE----ETTTTEEEEEEE
T ss_pred CcccccccceeEEEEE----ECCCCeeEEeeC
Confidence 5677888888886654 457889999976
No 224
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=43.57 E-value=53 Score=19.92 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=40.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCCHHHHHHHHHH
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSN 162 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~ 162 (206)
.++.|.++.-.-=...+++.+.. ..|..+.+.. ..+-+.|+|++.++...+++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~--~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL--NEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS--SEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc--cCCEEEEEECCHHHHHHHHHH
Confidence 57889999877667788999988 8999888843 344678888856666666654
No 225
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.63 E-value=21 Score=22.78 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=14.1
Q ss_pred CCeeEEEEecCCCCCEEEEEeCCH
Q psy11527 130 PGFSRVRMHNKGGSPVAFIEYTDV 153 (206)
Q Consensus 130 G~v~~v~l~~~~~~g~aFV~f~~~ 153 (206)
|.|++|. ..+..|||.|+|.
T Consensus 28 GtV~kV~----~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVD----SAREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEE----TTTTEEEEEETTT
T ss_pred eEEEEEe----cCCcEEEEEEccC
Confidence 5666663 4566999999873
No 226
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=32.88 E-value=27 Score=22.31 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=13.7
Q ss_pred CCeeEEEEecCCCCCEEEEEeCCH
Q psy11527 130 PGFSRVRMHNKGGSPVAFIEYTDV 153 (206)
Q Consensus 130 G~v~~v~l~~~~~~g~aFV~f~~~ 153 (206)
|.|++| +..++.|+|.|.|.
T Consensus 32 gtI~~V----~~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 32 GTIKKI----NILKQSCFIIFEDS 51 (66)
T ss_dssp EEEEEE----ETTTTEEEEEETTT
T ss_pred eEEEEE----ccCCcEEEEEEccC
Confidence 455554 34568999999873
No 227
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=32.26 E-value=78 Score=18.54 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=38.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeCC---HHHHHHHHH
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTD---VNFAIQAMS 161 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~~---~~~A~~Al~ 161 (206)
.++.|.++.-.--...+++.+....+|.++.+.. ..+-+.|+|.+ .++..+++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~--~~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNF--ALEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEET--TTTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEe--cCCEEEEEECCCCCHHHHHHHHH
Confidence 3677888877656678899999999999888854 44567888843 344445554
No 228
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=32.10 E-value=27 Score=22.92 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=14.7
Q ss_pred CCeeEEEEecCCCCCEEEEEeCCH
Q psy11527 130 PGFSRVRMHNKGGSPVAFIEYTDV 153 (206)
Q Consensus 130 G~v~~v~l~~~~~~g~aFV~f~~~ 153 (206)
|.|++|. ..+..|||.|+|.
T Consensus 45 GTI~kV~----~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVD----SAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEE----TTTTEEEEEETTS
T ss_pred EEEEEec----cCCCEEEEEEcCC
Confidence 6777664 4566899999874
No 229
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=35.09 E-value=12 Score=26.19 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=29.0
Q ss_pred CcHHHHHHHhcCCCCeeEEEEecCC--CCC---EEEEEeCCHHHHHHHHHHhCC
Q psy11527 117 VSEQEIKDIFGSFPGFSRVRMHNKG--GSP---VAFIEYTDVNFAIQAMSNLNG 165 (206)
Q Consensus 117 ~te~~L~~~F~~~G~v~~v~l~~~~--~~g---~aFV~f~~~~~A~~Al~~Lng 165 (206)
.++++|..+..+.+ +..+.+.+.. ++. .-+=.|.+.++|.+|+..|-.
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 34556666666665 3345444321 111 223489999999999988754
No 230
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.29 E-value=21 Score=22.50 Aligned_cols=13 Identities=8% Similarity=0.327 Sum_probs=9.8
Q ss_pred CCCCEEEEEeCCH
Q psy11527 141 GGSPVAFIEYTDV 153 (206)
Q Consensus 141 ~~~g~aFV~f~~~ 153 (206)
..+..|||.|.|.
T Consensus 33 ~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 33 SSKQSCLVTFEDN 45 (63)
T ss_dssp STTSEEEEEETTS
T ss_pred cCCCEEEEEEccC
Confidence 4556899999873
No 231
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=28.04 E-value=25 Score=18.87 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=11.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHH
Q psy11527 104 PCSTLFVANLGQFVSEQEIKDI 125 (206)
Q Consensus 104 ~~~~LfV~nL~~~~te~~L~~~ 125 (206)
..++||||+- .++|+++
T Consensus 4 qvrtiwvggt-----peelkkl 20 (36)
T 2ki0_A 4 QVRTIWVGGT-----PEELKKL 20 (36)
T ss_dssp SCCCCCBCCC-----HHHHHHH
T ss_pred eeEEEEecCC-----HHHHHHH
Confidence 3579999884 4555544
No 232
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=27.41 E-value=90 Score=23.68 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=28.3
Q ss_pred cHHHHHHHh--cCCCCeeEEEEec-CCCCCEEEEEeCCHHH-HHHHH
Q psy11527 118 SEQEIKDIF--GSFPGFSRVRMHN-KGGSPVAFIEYTDVNF-AIQAM 160 (206)
Q Consensus 118 te~~L~~~F--~~~G~v~~v~l~~-~~~~g~aFV~f~~~~~-A~~Al 160 (206)
+..+|++.| ..|..++-.-+.. ++..|++.|+|.+--. -..|+
T Consensus 34 s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 34 SGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHH
Confidence 457888877 8998876433322 2566899999987433 34444
No 233
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=27.34 E-value=1.3e+02 Score=21.25 Aligned_cols=35 Identities=11% Similarity=0.008 Sum_probs=22.2
Q ss_pred CCCeeEEEEecCCCCCEEEEE-eCCHHHHHHHHHHh
Q psy11527 129 FPGFSRVRMHNKGGSPVAFIE-YTDVNFAIQAMSNL 163 (206)
Q Consensus 129 ~G~v~~v~l~~~~~~g~aFV~-f~~~~~A~~Al~~L 163 (206)
+=.|.+|++..|.+-.-.||. |-+.++.+.++..|
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L 78 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVL 78 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHH
Confidence 347889999887665566777 55655444444434
No 234
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=24.39 E-value=48 Score=20.53 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=13.5
Q ss_pred CCeeEEEEecCCCCCEEEEEeCCH
Q psy11527 130 PGFSRVRMHNKGGSPVAFIEYTDV 153 (206)
Q Consensus 130 G~v~~v~l~~~~~~g~aFV~f~~~ 153 (206)
|.|++| +..+..++|.|+|.
T Consensus 22 GtI~~V----~~~~~~clV~F~D~ 41 (58)
T 4hcz_A 22 GTIKKV----DSAREVCLVQFEDD 41 (58)
T ss_dssp EEEEEE----ETTTTEEEEEETTS
T ss_pred EEEEEE----ecCCCEEEEEEcCC
Confidence 556555 34556899999873
No 235
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=23.14 E-value=99 Score=21.32 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=28.4
Q ss_pred CeeEEEEecCCCCCEEEEEeCCHHHHHHHHHHhCCCe
Q psy11527 131 GFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSY 167 (206)
Q Consensus 131 ~v~~v~l~~~~~~g~aFV~f~~~~~A~~Al~~Lng~~ 167 (206)
.|.++... +.-+||-|||=.+..+..+|++.+....
T Consensus 40 ~I~Si~~~-~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAP-EHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEEC-TTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEec-CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 57777554 5689999999999999999987765543
No 236
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=21.69 E-value=1.4e+02 Score=17.73 Aligned_cols=56 Identities=5% Similarity=-0.008 Sum_probs=39.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcCCCCeeEEEEecCCCCCEEEEEeC----CHHHHHHHHHHh
Q psy11527 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYT----DVNFAIQAMSNL 163 (206)
Q Consensus 106 ~~LfV~nL~~~~te~~L~~~F~~~G~v~~v~l~~~~~~g~aFV~f~----~~~~A~~Al~~L 163 (206)
.++.|.++.-.-=...+++.+....+|.++.+.. ..+-+.|+|+ +.++...+++.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~--~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVAL--LQNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEG--GGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEe--cCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 3577888876655677899999988999888854 3447788886 445666666543
No 237
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=20.01 E-value=61 Score=20.82 Aligned_cols=13 Identities=15% Similarity=0.164 Sum_probs=9.8
Q ss_pred CCCCCEEEEEeCC
Q psy11527 140 KGGSPVAFIEYTD 152 (206)
Q Consensus 140 ~~~~g~aFV~f~~ 152 (206)
+..|||+||+-++
T Consensus 11 n~~KGfGFI~~~d 23 (74)
T 2k5n_A 11 FKDKGFGFIKDEN 23 (74)
T ss_dssp ETTTTEEEEEESS
T ss_pred ECCCCeEEEecCC
Confidence 4578899988765
Done!