Your job contains 1 sequence.
>psy11527
MEKSNAKVLDIGAPFFHAGGPELWHHPLAYATAADLPGTASLHQHTLVHPALHPQVPSLN
IPHPTAALTAMHHANGMPHFLPSPALPSPVGSSPPSQGMNGMSPCSTLFVANLGQFVSEQ
EIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY
AKTKMAEFTTEHRTRHQGTKYGYTIH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11527
(206 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
WB|WBGene00003172 - symbol:mec-8 species:6239 "Caenorhabd... 245 8.0e-21 1
UNIPROTKB|G5ECJ4 - symbol:mec-8 "Protein MEC-8" species:6... 245 8.0e-21 1
FB|FBgn0263995 - symbol:cpo "couch potato" species:7227 "... 208 9.2e-16 1
TAIR|locus:2091526 - symbol:AT3G13700 species:3702 "Arabi... 197 9.8e-16 1
TAIR|locus:504955737 - symbol:AT3G21215 species:3702 "Ara... 167 9.1e-15 2
POMBASE|SPCC16C4.07 - symbol:scw1 "RNA-binding protein Sc... 180 5.9e-13 1
POMBASE|SPCC320.07c - symbol:mde7 "RNA-binding protein Md... 153 3.6e-12 2
SGD|S000002383 - symbol:WHI4 "Putative RNA binding protei... 149 7.9e-12 2
UNIPROTKB|G5EH29 - symbol:MGCH7_ch7g848 "RNA binding prot... 161 7.8e-11 1
ASPGD|ASPL0000063387 - symbol:AN7700 species:162425 "Emer... 159 1.3e-10 1
TAIR|locus:2060015 - symbol:AT2G42240 species:3702 "Arabi... 151 2.1e-10 1
SGD|S000005141 - symbol:WHI3 "RNA binding protein that se... 149 1.6e-09 1
DICTYBASE|DDB_G0268988 - symbol:DDB_G0268988 "RNA-binding... 135 1.5e-07 1
GENEDB_PFALCIPARUM|PF13_0122 - symbol:PF13_0122 "cyclophi... 105 7.9e-06 1
UNIPROTKB|C0H5C7 - symbol:PF13_0122 "RRM containing cyclo... 105 7.9e-06 1
TAIR|locus:2177033 - symbol:AT5G12190 species:3702 "Arabi... 99 4.0e-05 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 115 0.00013 1
UNIPROTKB|G4MTV6 - symbol:MGG_01579 "Pre-mRNA branch site... 93 0.00020 1
ZFIN|ZDB-GENE-060810-49 - symbol:ptbp2b "polypyrimidine t... 111 0.00059 1
UNIPROTKB|A2Y0J7 - symbol:OsI_18512 "U1 small nuclear rib... 106 0.00066 1
UNIPROTKB|Q0DKM4 - symbol:LOC_Os05g06280 "U1 small nuclea... 106 0.00066 1
GENEDB_PFALCIPARUM|PFL1200c - symbol:PFL1200c "hypothetic... 88 0.00074 1
UNIPROTKB|Q8I5G8 - symbol:PFL1200c "Splicing factor 3b su... 88 0.00074 1
CGD|CAL0002334 - symbol:WHI3 species:5476 "Candida albica... 77 0.00076 3
RGD|1561067 - symbol:Rbpms "RNA binding protein with mult... 87 0.00097 1
>WB|WBGene00003172 [details] [associations]
symbol:mec-8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0007638 "mechanosensory behavior"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0048644
"muscle organ morphogenesis" evidence=IGI;IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0031581 "hemidesmosome assembly"
evidence=IGI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002119 GO:GO:0000166 GO:GO:0048644 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048666 EMBL:Z81037 GO:GO:0031581 GO:GO:0007638
HSSP:P09012 GeneTree:ENSGT00500000044861 EMBL:X95609 EMBL:Z81084
PIR:T19360 RefSeq:NP_492508.1 SMR:G5ECJ4 IntAct:G5ECJ4
EnsemblMetazoa:F46A9.6.1 EnsemblMetazoa:F46A9.6.2
EnsemblMetazoa:F46A9.6.3 GeneID:172771 KEGG:cel:CELE_F46A9.6
CTD:172771 WormBase:F46A9.6 OMA:APSANGH NextBio:876941
Uniprot:G5ECJ4
Length = 312
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 46/85 (54%), Positives = 64/85 (75%)
Query: 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSN 162
S CSTLFVANL V+E ++ +F +F GF+R+R+HNK GS VAF+EY+D+ A QAM +
Sbjct: 225 SACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMIS 284
Query: 163 LNGSYLASSDRGAIRIEYAKTKMAE 187
L G + ++DRG +RIEYA+ KMA+
Sbjct: 285 LQGFQITANDRGGLRIEYARNKMAD 309
>UNIPROTKB|G5ECJ4 [details] [associations]
symbol:mec-8 "Protein MEC-8" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002119
GO:GO:0000166 GO:GO:0048644 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048666 EMBL:Z81037 GO:GO:0031581 GO:GO:0007638 HSSP:P09012
GeneTree:ENSGT00500000044861 EMBL:X95609 EMBL:Z81084 PIR:T19360
RefSeq:NP_492508.1 SMR:G5ECJ4 IntAct:G5ECJ4
EnsemblMetazoa:F46A9.6.1 EnsemblMetazoa:F46A9.6.2
EnsemblMetazoa:F46A9.6.3 GeneID:172771 KEGG:cel:CELE_F46A9.6
CTD:172771 WormBase:F46A9.6 OMA:APSANGH NextBio:876941
Uniprot:G5ECJ4
Length = 312
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 46/85 (54%), Positives = 64/85 (75%)
Query: 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSN 162
S CSTLFVANL V+E ++ +F +F GF+R+R+HNK GS VAF+EY+D+ A QAM +
Sbjct: 225 SACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMIS 284
Query: 163 LNGSYLASSDRGAIRIEYAKTKMAE 187
L G + ++DRG +RIEYA+ KMA+
Sbjct: 285 LQGFQITANDRGGLRIEYARNKMAD 309
>FB|FBgn0263995 [details] [associations]
symbol:cpo "couch potato" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS;IDA] [GO:0007422 "peripheral nervous system
development" evidence=NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0009987 "cellular process" evidence=IMP] [GO:0007268 "synaptic
transmission" evidence=IMP] [GO:0042048 "olfactory behavior"
evidence=IMP] [GO:0022611 "dormancy process" evidence=IMP]
[GO:0035206 "regulation of hemocyte proliferation" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007275 GO:GO:0005634
GO:GO:0000166 GO:GO:0007268 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0042048 GO:GO:0035206 CTD:130749 EMBL:Z14311 EMBL:Z14312
EMBL:Z14974 EMBL:AY129455 EMBL:BT001569 PIR:A46230 PIR:S24761
RefSeq:NP_001014631.2 RefSeq:NP_001014632.2 RefSeq:NP_001163640.1
RefSeq:NP_001163641.1 RefSeq:NP_524844.5 RefSeq:NP_732282.5
RefSeq:NP_732283.4 RefSeq:NP_732284.4 UniGene:Dm.6154
ProteinModelPortal:Q01617 SMR:Q01617 IntAct:Q01617 MINT:MINT-335471
STRING:Q01617 PaxDb:Q01617 GeneID:45840 GeneID:8674070
KEGG:dme:Dmel_CG31243 KEGG:dme:Dmel_CG42457 FlyBase:FBgn0000363
eggNOG:NOG255204 InParanoid:Q01617 OrthoDB:EOG4H44N8 ChiTaRS:CPO
NextBio:838394 Bgee:Q01617 GermOnline:CG31243 GO:GO:0022611
Uniprot:Q01617
Length = 738
Score = 208 (78.3 bits), Expect = 9.2e-16, P = 9.2e-16
Identities = 43/72 (59%), Positives = 50/72 (69%)
Query: 11 IGAPFFHAGGPELWHHPLAY--ATAADLPGTASLHQHTLVHPALHPQVPS-LNIPHPTAA 67
+G PFF GGPELWHHPLAY A AA+LPG A+L TLVHPALHPQVP+ + +P P
Sbjct: 563 LGGPFF-PGGPELWHHPLAYSAAAAAELPGAAALQHATLVHPALHPQVPTQMTMP-PHHQ 620
Query: 68 LTAMHHANGMPH 79
TA+H M H
Sbjct: 621 TTAIHPGAAMAH 632
Score = 115 (45.5 bits), Expect = 0.00029, P = 0.00029
Identities = 39/124 (31%), Positives = 47/124 (37%)
Query: 14 PFFHAGGPELWHHPLAYATAADLPGTASLHQHTLVHPALHP----QVPSLNIPHPTAALT 69
P H P P + T A PG A H A + P AA
Sbjct: 603 PALHPQVPTQMTMPPHHQTTAIHPGAAMAHMAAAAAAAAAGGGGGAATAAAAPQSAAATA 662
Query: 70 AMHHANGMPHFLXXXXXXXXXXXXXXXQ--G---MNGMSPCSTLFVANLGQFVSEQEIKD 124
A A H+L G + +PCSTLFVANLGQFVSE E+K+
Sbjct: 663 AAAAAASHHHYLSSPALASPAGSTNNASHPGNPQIAANAPCSTLFVANLGQFVSEHELKE 722
Query: 125 IFGS 128
+F S
Sbjct: 723 VFSS 726
>TAIR|locus:2091526 [details] [associations]
symbol:AT3G13700 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001307 UniGene:At.39361
OMA:APSANGH IPI:IPI00523019 RefSeq:NP_187983.1
ProteinModelPortal:B3H4P0 SMR:B3H4P0 PRIDE:B3H4P0
EnsemblPlants:AT3G13700.1 GeneID:820579 KEGG:ath:AT3G13700
TAIR:At3g13700 eggNOG:NOG298185 HOGENOM:HOG000242657
PhylomeDB:B3H4P0 ProtClustDB:CLSN2684800 ArrayExpress:B3H4P0
Genevestigator:B3H4P0 Uniprot:B3H4P0
Length = 296
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 36/83 (43%), Positives = 56/83 (67%)
Query: 97 QGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFA 156
+G +G CSTLF+ANLG +E E+K + +PGF +++ +GG PVAF ++ ++ A
Sbjct: 214 EGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQA 273
Query: 157 IQAMSNLNGSYLASSDRGAIRIE 179
AM++L G+ L+SSDRG + IE
Sbjct: 274 TDAMNHLQGNLLSSSDRGGMHIE 296
>TAIR|locus:504955737 [details] [associations]
symbol:AT3G21215 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09012 eggNOG:NOG255497
HOGENOM:HOG000242657 EMBL:AF361632 EMBL:AY143892 EMBL:AK118175
EMBL:AK226266 EMBL:AK317062 IPI:IPI00534607 RefSeq:NP_683582.2
UniGene:At.27825 ProteinModelPortal:Q9ASW4 SMR:Q9ASW4 IntAct:Q9ASW4
PaxDb:Q9ASW4 PRIDE:Q9ASW4 EnsemblPlants:AT3G21215.1 GeneID:821675
KEGG:ath:AT3G21215 TAIR:At3g21215 InParanoid:Q9ASW4 OMA:EASQVNF
PhylomeDB:Q9ASW4 ProtClustDB:CLSN2680031 Genevestigator:Q9ASW4
Uniprot:Q9ASW4
Length = 339
Score = 167 (63.8 bits), Expect = 9.1e-15, Sum P(2) = 9.1e-15
Identities = 31/86 (36%), Positives = 53/86 (61%)
Query: 97 QGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFA 156
Q + PC+TLF+ NLG+ ++E+E++ + + PGF ++++ + V FIE+ DVN A
Sbjct: 224 QNIKDNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSA 283
Query: 157 IQAMSNLNGSYLASSDRGAIRIEYAK 182
NL G+ + SS +RI+Y+K
Sbjct: 284 TNVHHNLQGAVIPSSGSIGMRIQYSK 309
Score = 44 (20.5 bits), Expect = 9.1e-15, Sum P(2) = 9.1e-15
Identities = 15/50 (30%), Positives = 18/50 (36%)
Query: 16 FHAGGPELWHHPLAYATAADLPGT--ASLHQHTLVHPALHP-QVPSLNIP 62
FH P +W P Y A P A H + P P PS +P
Sbjct: 173 FHPPPPPVWGPPHGYMAPAPPPYDPYAGYHAPPVPMPTPPPIAAPSSYVP 222
Score = 43 (20.2 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 48 VHPALHPQVPSLNIPHPTAALTA 70
+HP H Q P P P AA+++
Sbjct: 6 IHP-YHQQWPPAGAPPPPAAVSS 27
>POMBASE|SPCC16C4.07 [details] [associations]
symbol:scw1 "RNA-binding protein Scw1" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0032955 "regulation of
barrier septum assembly" evidence=IGI] [GO:0032995 "regulation of
fungal-type cell wall biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPCC16C4.07 GO:GO:0005737 GO:GO:0032995 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032955 OrthoDB:EOG42592X PIR:T41097
RefSeq:NP_587917.1 ProteinModelPortal:O74452 STRING:O74452
EnsemblFungi:SPCC16C4.07.1 GeneID:2539358 KEGG:spo:SPCC16C4.07
eggNOG:NOG255497 NextBio:20800523 Uniprot:O74452
Length = 561
Score = 180 (68.4 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 32/96 (33%), Positives = 58/96 (60%)
Query: 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNL 163
PC+T++V NL SE+E+K +F + G+ R+ KG P+ F+E+ ++ +A++A+ NL
Sbjct: 424 PCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNL 483
Query: 164 NGSYLASSDRGAIRIEYAKTKMA-EFTTEHRTRHQG 198
G L+SS +G IR+ ++K + ++ H G
Sbjct: 484 QGVCLSSSIKGGIRLSFSKNPLGVRSSSSSHNNHNG 519
>POMBASE|SPCC320.07c [details] [associations]
symbol:mde7 "RNA-binding protein Mde7" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IEP] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPCC320.07c GO:GO:0007126 GO:GO:0005737
GO:GO:0008380 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG12793
PIR:T41304 RefSeq:NP_587722.1 ProteinModelPortal:O59784
EnsemblFungi:SPCC320.07c.1 GeneID:2538704 KEGG:spo:SPCC320.07c
OrthoDB:EOG42592X NextBio:20799889 Uniprot:O59784
Length = 761
Score = 153 (58.9 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSN 162
SPC+T++V NL E++++ F G+ R+ KG SP+ F+E+ +V A +AM
Sbjct: 599 SPCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAKAMEK 658
Query: 163 LNGSYLASSDRGAIRIEYAKTKMAEFTTEH 192
+ G+ L +G IR+ Y+K + +TE+
Sbjct: 659 MQGAALDDKIKGGIRLSYSKNPLGVRSTEN 688
Score = 46 (21.3 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 31 ATAADLPGTASLHQHTLVHPALHPQVPSLNIP 62
++ A L SL Q L++P L + PSL +P
Sbjct: 156 SSIATLNAIPSLDQSVLLNPNLRARTPSL-VP 186
>SGD|S000002383 [details] [associations]
symbol:WHI4 "Putative RNA binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008361 "regulation of cell size"
evidence=IGI] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000002383 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006938 GO:GO:0008361
GO:GO:0003723 OrthoDB:EOG42592X HSSP:P09012 eggNOG:NOG255497
GeneTree:ENSGT00530000067542 HOGENOM:HOG000074699 EMBL:Z74272
PIR:S67787 RefSeq:NP_010057.1 ProteinModelPortal:Q07655 SMR:Q07655
DIP:DIP-4321N IntAct:Q07655 MINT:MINT-531190 STRING:Q07655
PaxDb:Q07655 PeptideAtlas:Q07655 EnsemblFungi:YDL224C GeneID:851302
KEGG:sce:YDL224C CYGD:YDL224c NextBio:968310 Genevestigator:Q07655
GermOnline:YDL224C Uniprot:Q07655
Length = 649
Score = 149 (57.5 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 34/107 (31%), Positives = 60/107 (56%)
Query: 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----------GGSPVAFIEYTDV 153
PC+TL+V NL +EQE++ +F + GF R+ NK G P+ F+E+ DV
Sbjct: 531 PCNTLYVGNLPPDATEQELRQLFSNQQGFRRLSFRNKMNSHGHGNGHGHGPICFVEFEDV 590
Query: 154 NFAIQAMSNLNGSYL-----ASSDRGAIRIEYAKTKMAEFTTEHRTR 195
+FA +A++ L GS L + +++G IR+ ++K + + R++
Sbjct: 591 SFATRALAELYGSQLPHPRPSLNNKGGIRLSFSKNPLGVRGSNSRSK 637
Score = 45 (20.9 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 43 HQHTLVHPALHPQVPSLNIPH----PTAALTAM-HHANGMPHF 80
HQ L+ P+ H + S ++PH P + + H A +PH+
Sbjct: 372 HQSNLLPPS-HHSI-SQDVPHIQSQPNLNNSGVIHSATSLPHY 412
>UNIPROTKB|G5EH29 [details] [associations]
symbol:MGCH7_ch7g848 "RNA binding protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM000230 EMBL:CM001237 RefSeq:XP_003720628.1
ProteinModelPortal:G5EH29 EnsemblFungi:MGG_03053T0 GeneID:2682606
KEGG:mgr:MGG_03053 Uniprot:G5EH29
Length = 622
Score = 161 (61.7 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 50/161 (31%), Positives = 76/161 (47%)
Query: 31 ATAADLPGT--ASLHQHTLVHPALHPQVPS----LNIPHPTAALTAMHHANGMPHFLXXX 84
ATA LP + A L +T HP + P PS L+ T + T ++ A G P
Sbjct: 339 ATAPQLPISRMAGLSLNTNGHP-MAPYGPSPVGQLSAHTNTMSPTMLNGA-GTPTMGYLG 396
Query: 85 XXXXXXXXXXXXQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSP 144
+ PC+TL+V NL SE+E+K F G+ R+ K P
Sbjct: 397 GHRFPGHSFPPVNPADQNPPCNTLYVGNLPIDTSEEELKATFSKQRGYKRLCFRTKQNGP 456
Query: 145 VAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTKM 185
+ F+E+ DV+FA +A+ L G L +S +G IR+ ++K +
Sbjct: 457 MCFVEFEDVSFATKALHELYGHMLHNSVKGGIRLSFSKNPL 497
>ASPGD|ASPL0000063387 [details] [associations]
symbol:AN7700 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032995 "regulation of
fungal-type cell wall biogenesis" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001304 EMBL:AACD01000130
OrthoDB:EOG42592X eggNOG:NOG255497 RefSeq:XP_680969.1
ProteinModelPortal:Q5AVI0 EnsemblFungi:CADANIAT00000831
GeneID:2869448 KEGG:ani:AN7700.2 HOGENOM:HOG000174215 OMA:NSVKGGI
Uniprot:Q5AVI0
Length = 628
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 40/127 (31%), Positives = 64/127 (50%)
Query: 61 IPHPTAALTA-MHHANGMPHFLXXXXXXXXXXXXXXXQGMNGMSP-CSTLFVANLGQFVS 118
IP P++A T M+ A G P F N M+P C+TL+V NL
Sbjct: 368 IPTPSSAYTPPMNGAVGNPGFPYNSQHTARHSFPAANP--NDMNPPCNTLYVGNLPPDTQ 425
Query: 119 EQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178
E+E+K +F G+ R+ NK P+ F+E+ DV A + ++ L G L++S + IR+
Sbjct: 426 EEELKALFSKQRGYKRLCFRNKQNGPMCFVEFEDVRTAGKTLNELYGYKLSNSIKTGIRL 485
Query: 179 EYAKTKM 185
++K +
Sbjct: 486 SFSKNPL 492
>TAIR|locus:2060015 [details] [associations]
symbol:AT2G42240 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000242657 UniGene:At.73056 EMBL:AK228665
IPI:IPI00570582 RefSeq:NP_001078040.1 ProteinModelPortal:Q0WQM7
SMR:Q0WQM7 EnsemblPlants:AT2G42240.2 GeneID:818824
KEGG:ath:AT2G42240 TAIR:At2g42240 OMA:CPTLFVA PhylomeDB:Q0WQM7
ProtClustDB:CLSN2699079 Genevestigator:Q0WQM7 Uniprot:Q0WQM7
Length = 302
Score = 151 (58.2 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNL 163
PC TLF+AN+G +E E+ +F GF ++++ G+PVAF+++ DV+ + +A+ L
Sbjct: 203 PCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTL 262
Query: 164 NGSYLASSDRGAI-RIEY 180
G+ L SS G + R++Y
Sbjct: 263 QGTVLYSSLTGEVLRLQY 280
Score = 117 (46.2 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGS-PVAFIEYTDVNFAIQAMSNLNG 165
TLFVA L + V +EI ++F FPG+ + + G+ P AF ++D+ A+ M LNG
Sbjct: 51 TLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNG 110
Query: 166 SYLASSDRGAIRIEYAKT 183
+ I+ AK+
Sbjct: 111 MVFDLEKHSTLHIDLAKS 128
>SGD|S000005141 [details] [associations]
symbol:WHI3 "RNA binding protein that sequesters CLN3 mRNA in
cytoplasmic foci" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;ISS;IMP;IDA] [GO:0008361
"regulation of cell size" evidence=IGI;IMP] [GO:0007124
"pseudohyphal growth" evidence=IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0001403 "invasive growth in response to glucose
limitation" evidence=IMP] [GO:0051220 "cytoplasmic sequestering of
protein" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005141
GO:GO:0005737 GO:GO:0051220 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006947 GO:GO:0008361 GO:GO:0003723 GO:GO:0007049
GO:GO:0001403 GO:GO:0007124 EMBL:X78898 OrthoDB:EOG42592X
eggNOG:NOG255497 EMBL:U01095 EMBL:Z71473 PIR:S50734
RefSeq:NP_014202.1 ProteinModelPortal:P34761 SMR:P34761
IntAct:P34761 MINT:MINT-4500279 STRING:P34761 PaxDb:P34761
PeptideAtlas:P34761 EnsemblFungi:YNL197C GeneID:855524
KEGG:sce:YNL197C CYGD:YNL197c GeneTree:ENSGT00530000067542
HOGENOM:HOG000074699 OMA:QRSRFSF NextBio:979559
Genevestigator:P34761 GermOnline:YNL197C Uniprot:P34761
Length = 661
Score = 149 (57.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK-----GGS--PVAFIEYTDVNFA 156
PC+TL+V NL +EQE++ +F GF R+ NK G S P+ F+E+ DV+FA
Sbjct: 536 PCNTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGPMCFVEFDDVSFA 595
Query: 157 IQAMSNLNGSYLASS---DRGAIRIEYAKTKM 185
+A++ L G L S +G IR+ ++K +
Sbjct: 596 TRALAELYGRQLPRSTVSSKGGIRLSFSKNPL 627
>DICTYBASE|DDB_G0268988 [details] [associations]
symbol:DDB_G0268988 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0268988 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000004 eggNOG:NOG255497 RefSeq:XP_646953.2
ProteinModelPortal:Q55ER7 EnsemblProtists:DDB0233676 GeneID:8616643
KEGG:ddi:DDB_G0268988 OMA:EFATMAM Uniprot:Q55ER7
Length = 356
Score = 135 (52.6 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 33/84 (39%), Positives = 51/84 (60%)
Query: 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGS-PVAFIEYTDVNFAIQA 159
GM PCSTLFV+NL + V+E+E+ +F GF +R+ NK G P+ F ++ D ++ A
Sbjct: 268 GM-PCSTLFVSNLPKDVTERELSILFRFMRGFVGIRLINKEGKLPMCFCDFIDTQSSMFA 326
Query: 160 MSNLNGSYLASSD-RGAIRIEYAK 182
+ L G + +SD +I IE+ K
Sbjct: 327 LEFLQGFRMDASDISSSISIEFDK 350
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 105 (42.0 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 99 MNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVR----MHNKGGSPVAFIEYTDVN 154
M+ + LFV + + + E+ + DIF SF + M K AF+EY +V+
Sbjct: 1 MSDNNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVD 60
Query: 155 FAIQAMSNLNGSYLASSDRGAIRIEYAKTKMAE 187
A A+ N+N L + R I + Y+KTK A+
Sbjct: 61 DAKHALYNMNNFEL-NGKR--IHVNYSKTKKAD 90
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 105 (42.0 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 99 MNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVR----MHNKGGSPVAFIEYTDVN 154
M+ + LFV + + + E+ + DIF SF + M K AF+EY +V+
Sbjct: 1 MSDNNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVD 60
Query: 155 FAIQAMSNLNGSYLASSDRGAIRIEYAKTKMAE 187
A A+ N+N L + R I + Y+KTK A+
Sbjct: 61 DAKHALYNMNNFEL-NGKR--IHVNYSKTKKAD 90
>TAIR|locus:2177033 [details] [associations]
symbol:AT5G12190 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 EMBL:AB007727 HOGENOM:HOG000276232 EMBL:BT002829
EMBL:BT004430 EMBL:AY088716 IPI:IPI00520700 RefSeq:NP_196780.1
UniGene:At.32166 ProteinModelPortal:Q9FMP4 SMR:Q9FMP4 IntAct:Q9FMP4
STRING:Q9FMP4 PaxDb:Q9FMP4 PRIDE:Q9FMP4 EnsemblPlants:AT5G12190.1
GeneID:831092 KEGG:ath:AT5G12190 TAIR:At5g12190 InParanoid:Q9FMP4
KO:K12833 OMA:YQSTKAF PhylomeDB:Q9FMP4 ProtClustDB:CLSN2686825
Genevestigator:Q9FMP4 GermOnline:AT5G12190 Uniprot:Q9FMP4
Length = 124
Score = 99 (39.9 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 27/94 (28%), Positives = 51/94 (54%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSRVRMH-NKGGSPVAFIEYTDVNFAIQAMSNLNGS 166
L+V NL ++ +E+ DIFG + ++R+ +K AF+ Y D+ A A+ +L+G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGF 80
Query: 167 YLASSDRGAIRIEYAKTKMAEFTTEHRTRHQGTK 200
+A+ R I + Y KM++ + ++ + TK
Sbjct: 81 NVAN--RYLIVLYYQHAKMSKKFDQKKSEDEITK 112
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 115 (45.5 bits), Expect = 0.00013, P = 0.00013
Identities = 34/111 (30%), Positives = 58/111 (52%)
Query: 97 QGMNGMS-PCST-LFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVN 154
QG +G S P +T +FV + Q V+E ++K +FG F V++ G F++Y +
Sbjct: 267 QGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI--PAGKRCGFVQYANRA 324
Query: 155 FAIQAMSNLNGSYLASSDRGAIRIEYAKTKMAEFTTEHRTRHQGTK--YGY 203
A QA+S LNG+ L +IR+ + ++ + T + ++ G YGY
Sbjct: 325 CAEQALSVLNGTQLGGQ---SIRLSWGRSPSNKQTQPDQAQYGGGGGYYGY 372
>UNIPROTKB|G4MTV6 [details] [associations]
symbol:MGG_01579 "Pre-mRNA branch site protein p14"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K12833 RefSeq:XP_003714557.1
ProteinModelPortal:G4MTV6 SMR:G4MTV6 EnsemblFungi:MGG_01579T0
GeneID:2679525 KEGG:mgr:MGG_01579 Uniprot:G4MTV6
Length = 115
Score = 93 (37.8 bits), Expect = 0.00020, P = 0.00020
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSP-VAFIEYTDVNFAIQAMSNLNGS 166
LFV NL V+ +E+ D+FG F +VR + AF+ Y DV A QA LNG
Sbjct: 15 LFVKNLSYNVTPEELFDLFGKFGPIRQVRQGIASNTKGTAFVVYEDVMDAKQACDKLNGF 74
Query: 167 YLASSDRGAIRIEYAKTKMAEFTTEHRTRHQ 197
+R + + + KMA + R +
Sbjct: 75 NF--QNRYLVVLYHQPEKMARSKEDLEARKE 103
>ZFIN|ZDB-GENE-060810-49 [details] [associations]
symbol:ptbp2b "polypyrimidine tract binding protein
2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060810-49 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 KO:K14948
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ EMBL:BX005269 IPI:IPI00855280
RefSeq:NP_001093477.1 UniGene:Dr.75530 SMR:A5PM68
Ensembl:ENSDART00000038648 GeneID:562434 KEGG:dre:562434 CTD:562434
OMA:YTAVTPQ NextBio:20884409 Uniprot:A5PM68
Length = 538
Score = 111 (44.1 bits), Expect = 0.00059, P = 0.00059
Identities = 42/147 (28%), Positives = 65/147 (44%)
Query: 51 ALHPQVPSLNIPHPTAALTAMHHANGMPHFLXXXXXXXXXXXXXXXQG---MNGMS-PCS 106
AL PSL + P+ +T+ G P L G ++G S P
Sbjct: 287 ALSKDSPSL-LGTPSGMVTSYSSGGGFPSSLGAISPLSAAAAAAAAAGRVALSGHSVPGG 345
Query: 107 TLFVANLG-QFVSEQEIKDIFGSFPGFSRVR-MHNKGGSPVAFIEYTDVNFAIQAMSNLN 164
L V+NL + V+ Q + +FG + RV+ ++NK S A I+ +D N A AMS+LN
Sbjct: 346 VLLVSNLNDEMVTPQSLFTLFGVYGDVQRVKILYNKKDS--ALIQMSDGNQAQLAMSHLN 403
Query: 165 GSYLASSDRGAIRIEYAKTKMAEFTTE 191
G + IR+ +K + + E
Sbjct: 404 GQKMYGK---IIRVTLSKHQTVQLPRE 427
>UNIPROTKB|A2Y0J7 [details] [associations]
symbol:OsI_18512 "U1 small nuclear ribonucleoprotein A"
species:39946 "Oryza sativa Indica Group" [GO:0005685 "U1 snRNP"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0000398 EMBL:CM000130 GO:GO:0017069
GO:GO:0005685 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 ProteinModelPortal:A2Y0J7 STRING:A2Y0J7
Gramene:A2Y0J7 Uniprot:A2Y0J7
Length = 253
Score = 106 (42.4 bits), Expect = 0.00066, P = 0.00066
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRM-HNKGGSPVAFIEYTDVNFAIQAMSN 162
P + LFV NL + ++ +F +PGF VRM K G +AF+EY D A AM++
Sbjct: 177 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPG--IAFVEYGDEGQATAAMNH 234
Query: 163 LNGSYLASSDRGAIRIEYAK 182
L G + ++ + I YAK
Sbjct: 235 LQGFKITKDNQ--MLISYAK 252
>UNIPROTKB|Q0DKM4 [details] [associations]
symbol:LOC_Os05g06280 "U1 small nuclear ribonucleoprotein
A" species:39947 "Oryza sativa Japonica Group" [GO:0005685 "U1
snRNP" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 EMBL:AP008211 EMBL:CM000142 GO:GO:0000398
GO:GO:0017069 GO:GO:0005685 PANTHER:PTHR10501 KO:K11091
ProtClustDB:CLSN2683617 RefSeq:NP_001054685.1 UniGene:Os.9766
ProteinModelPortal:Q0DKM4 GeneID:4337846 KEGG:osa:4337846
Gramene:Q0DKM4 Uniprot:Q0DKM4
Length = 253
Score = 106 (42.4 bits), Expect = 0.00066, P = 0.00066
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRM-HNKGGSPVAFIEYTDVNFAIQAMSN 162
P + LFV NL + ++ +F +PGF VRM K G +AF+EY D A AM++
Sbjct: 177 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPG--IAFVEYGDEGQATAAMNH 234
Query: 163 LNGSYLASSDRGAIRIEYAK 182
L G + ++ + I YAK
Sbjct: 235 LQGFKITKDNQ--MLISYAK 252
>GENEDB_PFALCIPARUM|PFL1200c [details] [associations]
symbol:PFL1200c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014188
HSSP:P19339 HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF
RefSeq:XP_001350646.1 ProteinModelPortal:Q8I5G8 SMR:Q8I5G8
PRIDE:Q8I5G8 EnsemblProtists:PFL1200c:mRNA GeneID:811292
KEGG:pfa:PFL1200c EuPathDB:PlasmoDB:PF3D7_1224900
ProtClustDB:CLSZ2433715 Uniprot:Q8I5G8
Length = 106
Score = 88 (36.0 bits), Expect = 0.00074, P = 0.00074
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSP-VAFIEYTDVNFAIQAMSNLNGS 166
L+V NL +S E+ DIFG + ++R N G+ +F+ Y D+ A A+ +L+G
Sbjct: 16 LYVRNLPYKISADELYDIFGKYGTVRQIRKGNAEGTKGTSFVVYDDIYDAKNALDHLSGF 75
Query: 167 YLA 169
+A
Sbjct: 76 NVA 78
>UNIPROTKB|Q8I5G8 [details] [associations]
symbol:PFL1200c "Splicing factor 3b subunit, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014188
HSSP:P19339 HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF
RefSeq:XP_001350646.1 ProteinModelPortal:Q8I5G8 SMR:Q8I5G8
PRIDE:Q8I5G8 EnsemblProtists:PFL1200c:mRNA GeneID:811292
KEGG:pfa:PFL1200c EuPathDB:PlasmoDB:PF3D7_1224900
ProtClustDB:CLSZ2433715 Uniprot:Q8I5G8
Length = 106
Score = 88 (36.0 bits), Expect = 0.00074, P = 0.00074
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSP-VAFIEYTDVNFAIQAMSNLNGS 166
L+V NL +S E+ DIFG + ++R N G+ +F+ Y D+ A A+ +L+G
Sbjct: 16 LYVRNLPYKISADELYDIFGKYGTVRQIRKGNAEGTKGTSFVVYDDIYDAKNALDHLSGF 75
Query: 167 YLA 169
+A
Sbjct: 76 NVA 78
>CGD|CAL0002334 [details] [associations]
symbol:WHI3 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0007124 "pseudohyphal growth"
evidence=IEA] [GO:0001403 "invasive growth in response to glucose
limitation" evidence=IEA] [GO:0051220 "cytoplasmic sequestering of
protein" evidence=IEA] [GO:0008361 "regulation of cell size"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0002334 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000020 EMBL:AACQ01000016 eggNOG:NOG255497
RefSeq:XP_720821.1 RefSeq:XP_721334.1 RefSeq:XP_888839.1
ProteinModelPortal:Q5AH44 STRING:Q5AH44 GeneID:3636991
GeneID:3637479 GeneID:3703850 KEGG:cal:CaO19.13847
KEGG:cal:CaO19.6494 KEGG:cal:CaO19_6494 Uniprot:Q5AH44
Length = 704
Score = 77 (32.2 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGS 143
PC+TL+V NL +E E++ +F GF R+ K S
Sbjct: 544 PCNTLYVGNLPPDATESELRTLFSPQKGFRRLSFRTKNQS 583
Score = 68 (29.0 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 138 HNKGGSPVAFIEYTDVNFAIQAMSNLNGSYL----ASSDRGAIRIEYAKTKM 185
H+ G P+ F+E+ DV A +A++ L G L + +G IR+ ++K +
Sbjct: 601 HSHG--PMCFVEFEDVAHATRALAELYGRALPRPNGGNGKGGIRLSFSKNPL 650
Score = 45 (20.9 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 48 VHPALHPQVPSLNIPH----PTAA 67
V PALH + NIP+ PTAA
Sbjct: 364 VAPALHTMTSNQNIPNTHLGPTAA 387
>RGD|1561067 [details] [associations]
symbol:Rbpms "RNA binding protein with multiple splicing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA;ISO] [GO:0008143 "poly(A) RNA binding"
evidence=IEA;ISO] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA;ISO]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561067
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00959368
Ensembl:ENSRNOT00000068011 Uniprot:F2Z3S5
Length = 110
Score = 87 (35.7 bits), Expect = 0.00097, P = 0.00097
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGF--SRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLN 164
TLFV+ L + +E+ +F F G+ S +++ +K PV F+ + + A A + LN
Sbjct: 3 TLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKNALN 60
Query: 165 GSYLASSDRGAIRIEYAK--TKMAE 187
G +R+E+AK TKMA+
Sbjct: 61 GIRFDPEIPQTLRLEFAKANTKMAK 85
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.133 0.410 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 206 191 0.00094 110 3 11 22 0.44 32
31 0.43 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 589 (63 KB)
Total size of DFA: 159 KB (2094 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.95u 0.07s 17.02t Elapsed: 00:00:25
Total cpu time: 16.95u 0.07s 17.02t Elapsed: 00:00:25
Start: Thu Aug 15 12:19:53 2013 End: Thu Aug 15 12:20:18 2013