RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11527
(206 letters)
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 59.8 bits (144), Expect = 6e-13
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 99 MNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQ 158
N P +TL ++N+ VSE+++K +F S G + + +A I+ V A+Q
Sbjct: 4 QNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQ 63
Query: 159 AMSNLNGSYLASSDRGAIRIEYAKTKM 185
A+ +L+ L + +R+ ++K+ +
Sbjct: 64 ALIDLHNHDL--GENHHLRVSFSKSTI 88
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 60.0 bits (145), Expect = 1e-12
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 99 MNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQ 158
M G SP + V NL V+ + IF F ++ K A ++Y D A
Sbjct: 1 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 60
Query: 159 AMSNLNGSYLASSDRGAIRIEYAKTK 184
A +L+G + ++ +RI+++K
Sbjct: 61 AKLSLDGQNIYNACCT-LRIDFSKLT 85
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 58.9 bits (142), Expect = 3e-12
Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGF-SRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNG 165
L++ NL ++ +E+ DIFG + + A++ Y D+ A A +L+G
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSG 68
Query: 166 SYLASSDRGAIRIEYAKTKMAEFTTEHRTRHQGTK 200
+ +R + + Y A + + + + K
Sbjct: 69 FNVC--NR-YLVVLYYNANRAFQKMDTKKKEEQLK 100
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 57.3 bits (138), Expect = 6e-12
Identities = 11/81 (13%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNL 163
T++ + +++Q ++ F F +R+ + +F+ ++ A A+ ++
Sbjct: 17 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSV 74
Query: 164 NGSYLASSDRGAIRIEYAKTK 184
NG+ + ++ + K
Sbjct: 75 NGTTIEGH---VVKCYWGKES 92
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 56.9 bits (137), Expect = 9e-12
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSF----PGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMS 161
+ L+V NL + +++ ++ IFG + VAF+ Y A +A+S
Sbjct: 7 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 66
Query: 162 NLNGSYLASSDRGAIRIEYA 181
LN + + + A
Sbjct: 67 ALNNVIPEGGSQ-PLSVRLA 85
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 56.6 bits (136), Expect = 1e-11
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 104 PCSTLFVANLGQFVSEQEIK----DIFGSFPGFSRVRMHNKGGSP-VAFIEYTDVNFAIQ 158
P T+++ NL + + + E+K IF F + + AF+ + +V+ A
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 61
Query: 159 AMSNLNGSYLASSDRGAIRIEYAKTK 184
A+ ++ G +RI+YAKT
Sbjct: 62 ALRSMQGFPFYDK---PMRIQYAKTD 84
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 56.4 bits (136), Expect = 1e-11
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 91 GSSPPSQGMNGMSPCSTLFVANLGQF-VSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIE 149
GSS S + S S +F+ NL V + +++ IF + +H AF++
Sbjct: 1 GSSGSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK----GFAFVQ 56
Query: 150 YTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
Y + A A++ +G +A + I A
Sbjct: 57 YVNERNARAAVAGEDGRMIAGQ---VLDINLAAEP 88
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 55.7 bits (134), Expect = 2e-11
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAI 157
+ TL+V NL + +E++I ++F ++ M F+EY A
Sbjct: 4 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAE 63
Query: 158 QAMSNLNGSYLASSDRGAIRIEYAKTK 184
AM +NG+ L D IR ++
Sbjct: 64 NAMRYINGTRL---DDRIIRTDWDAGF 87
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 54.6 bits (131), Expect = 5e-11
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSRV---RMHNKGGSPVAFIEYTDVNFAIQAMSNLN 164
L V+NL VS+ +I+++F F + + A + + A++AM N
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 165 GSYLASSDRGAIRIEYAKT 183
G L + I+ +
Sbjct: 63 GVPLDGR---PMNIQLVTS 78
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 54.2 bits (130), Expect = 6e-11
Identities = 13/80 (16%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGS----PVAFIEYTDVNFAIQAMSN 162
+L+V +L V+E + + F +R+ + A++ + A +A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 163 LNGSYLASSDRGAIRIEYAK 182
+N + +RI +++
Sbjct: 62 MNFDVIKGK---PVRIMWSQ 78
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 54.3 bits (130), Expect = 7e-11
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMS 161
+ L+V+ L + ++++E++ +F + R+ V FI + A +A+
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
Query: 162 NLNGSYLASSDRGAIRIEYA 181
LNG + + I +++A
Sbjct: 67 GLNGQKPSGATE-PITVKFA 85
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 54.3 bits (130), Expect = 1e-10
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 91 GSSPPSQ--GMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFI 148
GSS S G +P + L+V LG S + F F + A+I
Sbjct: 1 GSSGSSGKIGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYI 58
Query: 149 EYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
+Y ++ A A + + G L DR +R+++AK+
Sbjct: 59 QYESLDAAQAACAKMRGFPLGGPDR-RLRVDFAKSG 93
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 53.9 bits (129), Expect = 1e-10
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 99 MNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGG--SPVAFIEYTDVNFA 156
M TL+V NL + V+E I +F +M + P F+E+ + A
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDA 61
Query: 157 IQAMSNLNGSYLASSDRGAIRIEYAKTK 184
A++ +NG + +++ +A T
Sbjct: 62 AAALAAMNGRKILGK---EVKVNWATTP 86
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 54.2 bits (130), Expect = 1e-10
Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRM-----HNKGGSPVAFIEYTDVNFAIQAM 160
S + V N+ +++EI+++F +F VR+ F+++ A +A
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68
Query: 161 SNL-NGSYLASSDRGAIRIEYAKTK 184
+ L + ++L + +E+A ++
Sbjct: 69 NALCHSTHLYGR---RLVLEWADSE 90
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 53.9 bits (129), Expect = 1e-10
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRM--HNKGGSPVAFIEYTDVNFAIQAM 160
S +F+ NL + + + + D F +F ++ G F+ + A +A+
Sbjct: 6 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAI 65
Query: 161 SNLNGSYLASSDRGAIRIEYAKTK 184
+NG L + + K++
Sbjct: 66 EKMNGMLLNDR---KVFVGRFKSR 86
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 53.4 bits (128), Expect = 1e-10
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 98 GMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAI 157
G + S LFV NL ++E+E++ +F + V +H FI A
Sbjct: 1 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAE 58
Query: 158 QAMSNLNGSYLASSDRGAIRIEYAKTK 184
A L+ L +R+ +A
Sbjct: 59 IAKVELDNMPLRGK---QLRVRFACHS 82
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 53.5 bits (128), Expect = 1e-10
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMS 161
MS L+V NL SE+ I+ F + + R+ AF+ +++ A++AM
Sbjct: 5 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMK 62
Query: 162 NLNGSYLASSDRGAIRIEYAKTK 184
LNG L S I + AK
Sbjct: 63 ALNGKVLDGS---PIEVTLAKPV 82
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 52.7 bits (126), Expect = 3e-10
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGS----PVAFIEYTDVNFAIQ 158
+ +T++V L + VSE + ++F M + F+E+ A
Sbjct: 7 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 66
Query: 159 AMSNLNGSYLASSDRGAIRIEYAKTK 184
A+ ++ L IR+ A
Sbjct: 67 AIKIMDMIKLYGK---PIRVNKASAH 89
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 51.7 bits (123), Expect = 9e-10
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 91 GSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEY 150
GSS S + +S + V L + V E ++ + F V M A +E+
Sbjct: 1 GSSGSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEF 58
Query: 151 TDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
+++ A + ++ + Y+ +K
Sbjct: 59 ENIDSAKECVTFAADVPV-YIAGQQAFFNYSTSK 91
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 50.0 bits (119), Expect = 3e-09
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGS----PVAFIEYTDVNFAIQAMSNL 163
LF+ L ++++ ++K++ SF + + AF EY D+N QA++ L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 164 NGSYLASSDRGAIRIEYAKTK 184
NG L + ++ A
Sbjct: 64 NGMQL---GDKKLLVQRASVG 81
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 49.7 bits (118), Expect = 5e-09
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 102 MSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMS 161
+ TL NL ++E E+K++F V K +A+IE+ A + +
Sbjct: 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKG-IAYIEFKSEADAEKNLE 71
Query: 162 NLNGSYLASSDRGAIRIEYAKTK 184
G+ + ++ + Y K
Sbjct: 72 EKQGAEIDGR---SVSLYYTGEK 91
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 49.2 bits (117), Expect = 5e-09
Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRV----RMHNKGGSPVAFIEYTDVNFAIQAMS 161
+ L V L Q ++++E+ +F + + AF+++T + +A+
Sbjct: 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
Query: 162 NLNGSYLASSDRGAIRIEYAK 182
LNG + + +++ YA+
Sbjct: 63 VLNGITVRNK---RLKVSYAR 80
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 49.7 bits (118), Expect = 5e-09
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 92 SSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSP--VAFIE 149
SS S+ S L V+N+ + +++ +FG F V + F+
Sbjct: 1 SSGNSESK---STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVT 57
Query: 150 YTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTKM 185
+ + A +A L+G+ + I + A ++
Sbjct: 58 FENSADADRAREKLHGTVVEGR---KIEVNNATARV 90
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 49.3 bits (117), Expect = 6e-09
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGS----PVAFIEYTDVNFAIQAMS 161
+T+ V NL + E +++++F F SR+ + + AFI + A +A++
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 162 NLNGSYLASSDRGAIRIEYAKTK 184
++G D + +E+AK
Sbjct: 69 GVSGFGY---DHLILNVEWAKPS 88
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 49.3 bits (117), Expect = 6e-09
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 97 QGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRV-RMHNKGGSPVAFIEYTDVNF 155
+G G + C ++V NL + ++I+D+F + + + +GG P AF+E+ D
Sbjct: 7 RGPAGNNDC-RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRD 65
Query: 156 AIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
A A+ +G +R+E+ ++
Sbjct: 66 AEDAVYGRDGYDYDGY---RLRVEFPRSG 91
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 49.2 bits (117), Expect = 7e-09
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPV----AFIEYTDVNFA 156
+ S L V L +EQ++K+ F +F V++ + F+ +T+
Sbjct: 4 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQ 63
Query: 157 IQAMSNLNGSYLASSDRGAIRIEYAKTK 184
++ MS + D + +K
Sbjct: 64 VKVMSQRHM-----IDGRWCDCKLPNSK 86
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 48.9 bits (116), Expect = 1e-08
Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 93 SPPSQGMNGMSP----CSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGS----P 144
SP + ++ +SP T+F L + ++++D F + VR+ + S
Sbjct: 2 SPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKG 61
Query: 145 VAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
+A++E+ ++ L G L I ++ ++ +
Sbjct: 62 IAYVEFCEIQSV-PLAIGLTGQRLLGV---PIIVQASQAE 97
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 48.2 bits (114), Expect = 1e-08
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGS----PVAFIEYTDVNFAIQA 159
P L V L + +E++++++F + + V + S AF+ + +V+ A +A
Sbjct: 8 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 67
Query: 160 MSNLNGSYL 168
NG L
Sbjct: 68 KERANGMEL 76
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 48.6 bits (115), Expect = 2e-08
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 98 GMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMH----NKGGSPVAFIEYTDV 153
G +G S LFV NL SE++++ +F ++ S + K AF+ +
Sbjct: 1 GSSGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFP 60
Query: 154 NFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
A++A + ++G + + + K
Sbjct: 61 EHAVKAYAEVDGQVFQGR---MLHVLPSTIK 88
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 48.6 bits (115), Expect = 2e-08
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 106 STLFVANLG-QFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLN 164
S L V+NL + V+ Q + +FG + RV++ A ++ D N A AMS+LN
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLN 61
Query: 165 GSYLASSDRGAIRIEYAKTKMAEFTTEHRTRHQGTK 200
G L IRI +K + + E + TK
Sbjct: 62 GHKL---HGKPIRITLSKHQNVQLPREGQEDQGLTK 94
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 47.7 bits (113), Expect = 2e-08
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNL 163
+TL+V ++ ++ F F + M AF+ Y + A QA++ L
Sbjct: 4 KGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPRN--CAFVTYEKMESADQAVAEL 59
Query: 164 NGSYLASSDRGAIRIEYAKTK 184
NG+ + S +++ A+ +
Sbjct: 60 NGTQVESV---QLKVNIARKQ 77
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 48.2 bits (114), Expect = 2e-08
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 94 PPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRV----RMHNKGGSPVAFIE 149
P N P L++ NL V+E+++ +F F RM AFI
Sbjct: 7 PMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFIT 66
Query: 150 YTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
+ + A QA+ +NG L + IE+ K K
Sbjct: 67 FPNKEIAWQALHLVNGYKLYGK---ILVIEFGKNK 98
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 47.4 bits (112), Expect = 3e-08
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMH----NKGGSPVAFIEYTDVNFAIQAMS 161
+ L V L Q ++++E + +FGS ++ F+ Y D A +A++
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 162 NLNGSYLASSDRGAIRIEYAK 182
LNG L + I++ YA+
Sbjct: 63 TLNGLRLQTK---TIKVSYAR 80
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 47.8 bits (113), Expect = 3e-08
Identities = 14/85 (16%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQA 159
+ LF+ +L Q +Q++ +F F ++ F+ Y + A A
Sbjct: 17 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 76
Query: 160 MSNLNGSYLASSDRGAIRIEYAKTK 184
+ ++NG + ++++ ++K
Sbjct: 77 IQSMNGFQIGMK---RLKVQLKRSK 98
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 47.3 bits (112), Expect = 3e-08
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPG-------FSRVRMHNKGGSPVAFIEYTDVNFAIQAM 160
LF+ NL +E+ +K +F + + F+EY A +A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 161 SNLNGSYLASSDRGAIRIEYAKTK 184
L G + + + ++
Sbjct: 61 KQLQGHTVDGH---KLEVRISERA 81
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 46.7 bits (110), Expect = 5e-08
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSRV-----RMHNKGGSPVAFIEYTDVNFAIQAMSN 162
+F+ NL + E+ + D F +F + AFI + + + A+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 163 LNGSYLASSDRGAIRIEYAKTK 184
+NG YL + I + YA K
Sbjct: 61 MNGQYLCNR---PITVSYAFKK 79
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 46.6 bits (110), Expect = 5e-08
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGS----PVAFIEYTDVNFAIQ 158
+ L+V L + V ++ + F F + +++ + AF+E+ A
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62
Query: 159 AMSNLNGSYLASSDRGAIRIEYAKTK 184
A+ N+N S L IR+ AK
Sbjct: 63 AIDNMNESELFGR---TIRVNLAKPM 85
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 46.6 bits (110), Expect = 6e-08
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSF---------PGFSRVRMHNKGGSPVAFIEYTDVNFA 156
LF+ + + +EI + + +M N+G AF+EY A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRG---FAFVEYESHRAA 58
Query: 157 IQAMSNLNGSYLASSDRGAIRIEYAKTK 184
A L + I +++A+ +
Sbjct: 59 AMARRKLMPGRIQLWGH-QIAVDWAEPE 85
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 46.3 bits (109), Expect = 7e-08
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMS 161
LFV ++ + E EI++ F + + ++ A +EY A+ A
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 162 NLNGSYLASSDRGAIRIEYAKTK 184
LNG+ + I++++ K
Sbjct: 68 ALNGAEIMGQ---TIQVDWCFVK 87
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 44.7 bits (105), Expect = 2e-07
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAM 160
G S S + V NL Q + QE+ D+ + + AF+ + A A+
Sbjct: 1 GSSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKR--TAFVTLLNGEQAQNAI 57
Query: 161 SNLNGSYLASSDRGAIRIEYAKTK 184
+ + ++ T
Sbjct: 58 QMFHQYSFRGK---DLIVQLQPTD 78
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 45.1 bits (106), Expect = 3e-07
Identities = 11/100 (11%), Positives = 32/100 (32%), Gaps = 8/100 (8%)
Query: 89 PVGSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSP---- 144
+ + P + LF+ L +E+ +++ + + + + S
Sbjct: 4 TLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRG 63
Query: 145 VAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
F+ ++ + AM + D + + A +
Sbjct: 64 FGFVTFSSMAEVDAAM-AARPHSI---DGRVVEPKRAVAR 99
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 44.4 bits (104), Expect = 4e-07
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSP----VAFIEYTDVNFAIQAMSN 162
LFV L +EQ ++ +F + S V + + F+ + +++ A AM
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 163 LNGSYLASSDRGAIRIEYAKTK 184
+NG + D IR++ A
Sbjct: 67 MNGKSV---DGRQIRVDQAGKS 85
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 43.7 bits (102), Expect = 6e-07
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 104 PCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNL 163
P LF+ NL + +E + +F FPGF + +AF+E+T + A L
Sbjct: 7 PNQILFLTNLPEETNEMMLSMLFNQFPGF-KEVRLVPNRHDIAFVEFTTELQSNAAKEAL 65
Query: 164 NGSYLASSDRGAIRIEYAK 182
G + + ++I +AK
Sbjct: 66 QGFKITPTHA--MKITFAK 82
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 43.9 bits (103), Expect = 7e-07
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 103 SPCSTLFVA--NLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAM 160
+L VA LG VS ++ + + M P +F Y + +A
Sbjct: 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAY 73
Query: 161 SNLNGSYL 168
LNG +
Sbjct: 74 VTLNGKEV 81
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 43.1 bits (101), Expect = 8e-07
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSF-PGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLN 164
+ L++ NL V+ +++ +FG + + G AF++Y D N+AI+A+ L+
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSG---YAFVDYPDQNWAIRAIETLS 58
Query: 165 GSYLASSDRGAIRIEYAKTK 184
G + ++Y+ +K
Sbjct: 59 GKVELHGKI--MEVDYSVSK 76
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 43.5 bits (102), Expect = 9e-07
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 12/87 (13%)
Query: 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAM 160
G S S +FV ++E E+++ F + V + + AF+ + D A
Sbjct: 1 GSSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRA-FAFVTFADDQIAQSLC 59
Query: 161 SN---LNGSYLASSDRGAIRIEYAKTK 184
+ G ++ I A+ K
Sbjct: 60 GEDLIIKGI--------SVHISNAEPK 78
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 44.1 bits (103), Expect = 1e-06
Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 54 PQVPSLNIPHPTAALTAMHHANGMPHFLPSPALPSPVGSSPPSQGMNGMSPCSTLFVANL 113
Q+P ++ P + PP+Q L V +
Sbjct: 2 SQIPLVSQYDPYGQTAQLQQLQ-----------QQQQQHIPPTQMNPEPDVLRNLMVNYI 50
Query: 114 GQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSNLNGSYLA 169
V E +++ +F + V++ F+++ + A QA++ LNG +
Sbjct: 51 PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110
Query: 170 SSDRGAIRIEYAKTK 184
+ +++ A +
Sbjct: 111 NK---RLKVALAASG 122
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 43.6 bits (102), Expect = 1e-06
Identities = 7/66 (10%), Positives = 17/66 (25%), Gaps = 1/66 (1%)
Query: 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSN 162
C F +L +++ +F + + + A+ +
Sbjct: 9 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKE-GIILFKEKAKEALGKAKD 67
Query: 163 LNGSYL 168
N L
Sbjct: 68 ANNGNL 73
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 43.2 bits (101), Expect = 1e-06
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 6/94 (6%)
Query: 91 GSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEY 150
GSS S G + V+ L S Q++KD + + +EY
Sbjct: 1 GSSGSSGGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD---GMGMVEY 57
Query: 151 TDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
A+ L+ + S Y +
Sbjct: 58 LRKEDMEYALRKLDDTKFRSH---EGETSYIRVY 88
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 42.3 bits (99), Expect = 2e-06
Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSP----VAFIEYTDVNFAIQAMSNL 163
+F+ L +++ +++ FG F + + F+ + D + +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-AQ 61
Query: 164 NGSYLASSDRGAIRIEYA 181
+ L D I + A
Sbjct: 62 SRHEL---DSKTIDPKVA 76
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 42.3 bits (99), Expect = 2e-06
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGS----PVAFIEYTDVNFAIQAMSN 162
LF+ L +++ ++ F + + + + F+ Y V AM N
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 66
Query: 163 LNGSYL 168
+
Sbjct: 67 ARPHKV 72
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 42.1 bits (98), Expect = 3e-06
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSP----VAFIEYTDVNFAIQAMSN 162
++FV N+ +E+++KDIF R+ + F EY D A+ AM N
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 163 LNGSYLASSDRGAIRIEYAKTK 184
LNG + A+R++ A ++
Sbjct: 70 LNGREFSGR---ALRVDNAASE 88
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 42.0 bits (98), Expect = 4e-06
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 91 GSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPG--FSRVRMHNKGGSPVAFI 148
GSS S SP T F+ NL V+E+ IK+ F R + F
Sbjct: 1 GSSGSSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFG 60
Query: 149 EYT-DVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
+ ++ + +LN L IR++ A
Sbjct: 61 YAEFEDLDSLLSALSLNEESL---GNKRIRVDVADQA 94
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 41.4 bits (96), Expect = 5e-06
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 99 MNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQ 158
M+G +P L + L V+E E+ + F + + M AF+E AI
Sbjct: 3 MDG-APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAIT 59
Query: 159 AMSNLNGSYLASSDRGAIRIEYAKTK 184
++ + ++ I I+Y+ K
Sbjct: 60 MVNYYSAVTPHLRNQ-PIYIQYSNHK 84
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 40.7 bits (95), Expect = 5e-06
Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPV----AFIEYTDVNFAIQAMSNL 163
+F+ L +++++KD F F + + F+ + + + M +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-DQ 60
Query: 164 NGSYL 168
L
Sbjct: 61 KEHKL 65
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 41.3 bits (96), Expect = 6e-06
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK----GGSPVAFIEYTDVNFAIQAMSN 162
T+F+ NL E+ + ++ F VR+ AF ++ A + ++
Sbjct: 10 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 69
Query: 163 LNGSYLASS---DRGAIRIEYAKTK 184
+ D ++++ A T+
Sbjct: 70 ASLEAEGGGLKLDGRQLKVDLAVTR 94
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 41.4 bits (97), Expect = 6e-06
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 119 EQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRI 178
++++ F ++ + ++ VA + + D A + L+G + R I
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG--GR-QITA 89
Query: 179 EYAKTK 184
+
Sbjct: 90 QAWDGT 95
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 40.9 bits (95), Expect = 6e-06
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG----GSPVAFIEYTDVNFAIQAMSN 162
TL++ N +++ I+D+ + A+I+ T A +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 163 LNGSYLASSDRGAIRIEYAK 182
LNG + + + +
Sbjct: 63 LNGLKIEGY---TLVTKVSN 79
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 41.5 bits (96), Expect = 7e-06
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 6/102 (5%)
Query: 96 SQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNF 155
S G +G S + NL EI++ F F RV + G A +E+ +
Sbjct: 2 SSGSSGRSKT-VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGI--TAIVEFLEPLE 58
Query: 156 AIQAMSNLNGSYLASSDRGAIRIEYAKTKMAEFTTEHRTRHQ 197
A +A +L S + +E+A + + +
Sbjct: 59 ARKAFRHLAYSKFHHVP---LYLEWAPIGVFGAAPQKKDSQH 97
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 40.9 bits (95), Expect = 9e-06
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 15/94 (15%)
Query: 103 SPCSTLFVANLGQFVSEQEIKDIFGSF--------PGFSRVRMH----NKGGSPVAFIEY 150
S S ++V L V+ ++ D F G + ++ A + Y
Sbjct: 6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY 65
Query: 151 TDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
D A A+ +G S +++ A+ K
Sbjct: 66 EDPPTAKAAVEWFDGKDFQGS---KLKVSLARKK 96
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 39.6 bits (92), Expect = 1e-05
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGS----PVAFIEYTDVNFAIQAMSNL 163
+FV L E++I++ FG F + + + FI + + + M
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 164 N 164
Sbjct: 62 Y 62
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 39.3 bits (91), Expect = 2e-05
Identities = 8/78 (10%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGS----PVAFIEYTDVNFAIQAMSNL 163
+FV L + +++K F F + + F+ + + + +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-EI 60
Query: 164 NGSYLASSDRGAIRIEYA 181
+ + + + + A
Sbjct: 61 HFHEINNK---MVECKKA 75
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 38.6 bits (89), Expect = 3e-05
Identities = 8/65 (12%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSR----VRMHNKGGSPVAFIEYTDVNFAIQAMSNL 163
L++ L ++Q++ + + + F+++ + A +A++ L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 164 NGSYL 168
S +
Sbjct: 61 KASGV 65
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 36.2 bits (83), Expect = 3e-04
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 101 GMSPCSTLFVANLGQFVSEQEIKDIFGSFPGF--SRVRMHNKGGSP--VAFIEYTDVNFA 156
G + + V N+ VS EI D F + S +N+ G P A + + + A
Sbjct: 5 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEA 64
Query: 157 IQAMSNLNGSYLASSDRGAIRIEYA 181
A+ +LN + S +++
Sbjct: 65 TAAVIDLNDRPIGSR---KVKLVLG 86
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 35.9 bits (82), Expect = 6e-04
Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 101 GMSPCSTLFVANL-----GQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNF 155
G S S L + + + + +F ++ + + I +++
Sbjct: 1 GSSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKR--VRINFSNPLS 58
Query: 156 AIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
A A L+ + +++ +A+T
Sbjct: 59 AADARLRLHKTEFLGK---EMKLYFAQTL 84
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 35.2 bits (80), Expect = 6e-04
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 106 STLFVANLGQFVSEQEIKDIFGSFPGFSRVRM--HNKGGSPVAFIEYTDVNFAIQAMSNL 163
+T+ V NL + ++ ++ F V + K A IE+ + A+ A++
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKT 60
Query: 164 N 164
+
Sbjct: 61 H 61
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 35.2 bits (80), Expect = 6e-04
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 6/88 (6%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSY 167
+ V+ L S Q++KD ++ +E+ A+ L+ +
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTK 59
Query: 168 LASSDRGAIRIEYAKTKMAEFTTEHRTR 195
S + Y + K+ + R
Sbjct: 60 FRSHE---GETAYIRVKVDGPRSPSYGR 84
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 34.5 bits (78), Expect = 0.001
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSNLNGSY 167
+ + L V+ QE+ D+ + K AF+ + A A++ + S
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYK---GTAFVTLLNGEQAEAAINTFHQSR 57
Query: 168 LASSDRGAIRIEYAKTK 184
+ ++ T
Sbjct: 58 ---LRERELSVQLQPTD 71
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 35.1 bits (80), Expect = 0.001
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKG---GSPVAFIEYTDVNFAIQAMSNL 163
L+++NL + EQE++++ F R+ V F + +
Sbjct: 20 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 79
Query: 164 NGSYL 168
NG ++
Sbjct: 80 NGKFI 84
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 34.7 bits (79), Expect = 0.001
Identities = 8/79 (10%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRM---HNKGGSPVAFIEYTDVNFAIQAMSNL 163
++++ + +IK+ ++M +K F+ + + A + +
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP 67
Query: 164 NGSYLASSDRGAIRIEYAK 182
Y + + I +
Sbjct: 68 GQKYK---ET-DLLILFKD 82
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 34.7 bits (79), Expect = 0.001
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 8/82 (9%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMH----NKGGSPVAFIEYTDVNFAIQAMSN 162
+FV L ++ ++ F F + F+ D A +A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 163 LNGSYLASSDRGAIRIEYAKTK 184
N D + A
Sbjct: 72 PNPII----DGRKANVNLAYLG 89
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 35.7 bits (81), Expect = 0.002
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 19/115 (16%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMH-------NKGGSPVAFIEYTDVNFAIQA 159
LF+ L +++ ++ F + + + ++G V + +V+ A+ A
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 160 MSNLNGSYLASSDRGAIRIEYAKTKMAE------------FTTEHRTRHQGTKYG 202
+ + R R + + T EH R +YG
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 122
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 34.6 bits (79), Expect = 0.002
Identities = 12/107 (11%), Positives = 31/107 (28%), Gaps = 13/107 (12%)
Query: 77 MPHFLPSPALPSPVGSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVR 136
+ + +P + S S + + E+ ++ + +
Sbjct: 6 LLNIYRNPQ-------NSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMN 58
Query: 137 -MHNKGGSP--VAFIEYTDVNFAIQAMSNLNGSYLASSDRGAIRIEY 180
N G ++++ A +A+ +LN + I E
Sbjct: 59 VCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ---PIHAEL 102
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 33.2 bits (75), Expect = 0.003
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPV----AFIEYTDVNFAIQAMSN 162
+FV + + E ++D F + + + GS AF+ + D + ++ +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD-SVDKIVI 62
Query: 163 LNGSYL 168
+
Sbjct: 63 QKYHTV 68
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 32.8 bits (74), Expect = 0.007
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 91 GSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAF--I 148
GSS S + + + L +E +I + F G +
Sbjct: 1 GSSGSSGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADV 60
Query: 149 EYTDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
E+ A+ AM + + + + + T
Sbjct: 61 EFATHEDAVAAM-AKDKANM---QHRYVELFLNSTA 92
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 31.3 bits (70), Expect = 0.018
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 107 TLFVANLGQFVSEQEIKDI------FGSFPGFSRVRMHNKGGSP----VAFIEYTDVNFA 156
+FV L Q +++ E+ FG + GS A++ Y A
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 157 IQAMSNLNGSYL 168
++A+ +N +
Sbjct: 70 LRAIQCVNNVVV 81
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 30.9 bits (69), Expect = 0.023
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 107 TLFVANLGQFVSEQEIKDIFGSF--------PGFSRVRMHNKGGS-PVAFIEYTDVNFAI 157
L+V N+ ++E+ + D F + + V AF+E+ V+
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 158 QAMSNLNGSYL 168
QAM +G
Sbjct: 63 QAM-AFDGIIF 72
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 31.1 bits (69), Expect = 0.026
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 96 SQGMNGMSP--CSTLFVANLGQFVSEQEIKDIF---GSFPGFSRVRMHNKGGSPVAFIEY 150
S + G LF+ NL S E+K + + V + ++++
Sbjct: 2 SHMVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDF 61
Query: 151 TDVNFAIQAMSNLNGSYLASSDRGAIRIEYAKTK 184
+A+ L G + + I++E K +
Sbjct: 62 ESAEDLEKAL-ELTGLKVFGN---EIKLEKPKGR 91
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 29.8 bits (66), Expect = 0.080
Identities = 9/98 (9%), Positives = 29/98 (29%), Gaps = 8/98 (8%)
Query: 103 SPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMH----NKGGSPVAFIEYTDVNFAIQ 158
S + N+ +++ ++ P N G A +++ + + A +
Sbjct: 6 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARK 65
Query: 159 AMSNLNGSYLASSDRGAIRIEYAKTKMAEFTTEHRTRH 196
+ L+ L + + + ++
Sbjct: 66 SER-LHRKKL---NGREAFVHVVTLEDMREIEKNPPAQ 99
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa
(Medicago sativa) [TaxId: 3879]}
Length = 244
Score = 28.9 bits (64), Expect = 0.39
Identities = 18/162 (11%), Positives = 50/162 (30%), Gaps = 21/162 (12%)
Query: 6 AKVLDIGAPFFHAGGPELWHHPLAYATAADLPGTASLHQ-----HTLVHPALHPQVPSLN 60
+ ++D+G + +PL DLP +
Sbjct: 83 STLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDA 142
Query: 61 I---------PHPTAALTAMHHANGMPH----FLPSPALPSPVGSSPPSQGMNGMSPCST 107
+ + + + LP +S S+ ++ + +
Sbjct: 143 MILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLD--NL 200
Query: 108 LFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNKGGSPVAFIE 149
+F+ G+ +E++ + + GFS+ ++ + + + +E
Sbjct: 201 MFITVGGRERTEKQYEKLSKL-SGFSKFQVACRAFNSLGVME 241
>d1xqba_ e.56.1.1 (A:) Hypothetical protein HI0510 {Haemophilus
influenzae [TaxId: 727]}
Length = 231
Score = 26.1 bits (57), Expect = 3.1
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 2/84 (2%)
Query: 82 PSPALPSPVGSSPPS-QGMNGMSPCSTLFVANLGQFVSEQEIKDIFGSFPGFSRVRMHNK 140
+ P+P+G S + + ++ L + + V I DI
Sbjct: 92 RATHRPNPLGMSKVELRQVECINGNIFLHLGAV-DLVDGTPIFDIKPYIAYADSEPNAQS 150
Query: 141 GGSPVAFIEYTDVNFAIQAMSNLN 164
+ V F QA S +
Sbjct: 151 SFAQEKLPVKMTVEFTEQAKSAVK 174
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 24.8 bits (53), Expect = 8.7
Identities = 11/156 (7%), Positives = 29/156 (18%), Gaps = 1/156 (0%)
Query: 8 VLDIGAPFFHAGGPELWHHPLAYATAADLPGTASLHQ-HTLVHPALHPQVPSLNIPHPTA 66
++++G G A + A + ++ A
Sbjct: 29 IIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCA 88
Query: 67 ALTAMHHANGMPHFLPSPALPSPVGSSPPSQGMNGMSPCSTLFVANLGQFVSEQEIKDIF 126
+ A + G Q V + + +
Sbjct: 89 DINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGE 148
Query: 127 GSFPGFSRVRMHNKGGSPVAFIEYTDVNFAIQAMSN 162
R+ + + D+ +
Sbjct: 149 ADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIH 184
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid
3/5-O-methyltransferase {Alfalfa (Medicago sativa)
[TaxId: 3879]}
Length = 243
Score = 24.4 bits (52), Expect = 9.7
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Query: 6 AKVLDIGAPFFHAGGPELWHHPLAYATAADLPGTASLHQHTLVHPALHPQVPSLNIPHPT 65
++D+G + +P DLP + +P + + + P
Sbjct: 83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVI---EDAPSYPGVEHVGGDMFVSIPK 139
Query: 66 AALTAMHH 73
A M
Sbjct: 140 ADAVFMKW 147
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.408
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 764,231
Number of extensions: 33131
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 88
Length of query: 206
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,295,466
Effective search space: 161933250
Effective search space used: 161933250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)