BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11528
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V4T|A Chain A, Crystal Structure Of Human Glucokinase
pdb|3H1V|X Chain X, Human Glucokinase In Complex With A Synthetic Activator
Length = 451
Score = 77.4 bits (189), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G+L+ WTKGFK G G NVV LL+ A+ RR +F ++VVA++NDT ++SC Y+ C+
Sbjct: 148 GILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYEDHQCE 207
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGL-EFCPQY 132
+ ++ C + N+ L EG G+ + + W F L EF +Y
Sbjct: 208 VGMIVGTGCNACYMEEMQNVEL--VEGDEGR---MCVNTEWGAFGDSGELDEFLLEY 259
>pdb|1V4S|A Chain A, Crystal Structure Of Human Glucokinase
pdb|3VEY|A Chain A, Glucokinase In Complex With Glucose And Atpgs
Length = 455
Score = 77.4 bits (189), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G+L+ WTKGFK G G NVV LL+ A+ RR +F ++VVA++NDT ++SC Y+ C+
Sbjct: 152 GILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYEDHQCE 211
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGL-EFCPQY 132
+ ++ C + N+ L EG G+ + + W F L EF +Y
Sbjct: 212 VGMIVGTGCNACYMEEMQNVEL--VEGDEGR---MCVNTEWGAFGDSGELDEFLLEY 263
>pdb|4DCH|A Chain A, Insights Into Glucokinase Activation Mechanism:
Observation Of Multiple Distinct Protein Conformations
Length = 473
Score = 77.4 bits (189), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G+L+ WTKGFK G G NVV LL+ A+ RR +F ++VVA++NDT ++SC Y+ C+
Sbjct: 162 GILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYEDHQCE 221
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGL-EFCPQY 132
+ ++ C + N+ L EG G+ + + W F L EF +Y
Sbjct: 222 VGMIVGTGCNACYMEEMQNVEL--VEGDEGR---MCVNTEWGAFGDSGELDEFLLEY 273
>pdb|3S41|A Chain A, Glucokinase In Complex With Activator And Glucose
pdb|4DHY|A Chain A, Crystal Structure Of Human Glucokinase In Complex With
Glucose And Activator
Length = 469
Score = 77.4 bits (189), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G+L+ WTKGFK G G NVV LL+ A+ RR +F ++VVA++NDT ++SC Y+ C+
Sbjct: 166 GILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYEDHQCE 225
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGL-EFCPQY 132
+ ++ C + N+ L EG G+ + + W F L EF +Y
Sbjct: 226 VGMIVGTGCNACYMEEMQNVEL--VEGDEGR---MCVNTEWGAFGDSGELDEFLLEY 277
>pdb|3QIC|A Chain A, The Structure Of Human Glucokinase E339k Mutation
Length = 470
Score = 77.4 bits (189), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G+L+ WTKGFK G G NVV LL+ A+ RR +F ++VVA++NDT ++SC Y+ C+
Sbjct: 167 GILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYEDHQCE 226
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGL-EFCPQY 132
+ ++ C + N+ L EG G+ + + W F L EF +Y
Sbjct: 227 VGMIVGTGCNACYMEEMQNVEL--VEGDEGR---MCVNTEWGAFGDSGELDEFLLEY 278
>pdb|3IMX|A Chain A, Crystal Structure Of Human Glucokinase In Complex With A
Synthetic Activator
Length = 455
Score = 77.4 bits (189), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G+L+ WTKGFK G G NVV LL+ A+ RR +F ++VVA++NDT ++SC Y+ C+
Sbjct: 152 GILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYEDHQCE 211
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGL-EFCPQY 132
+ ++ C + N+ L EG G+ + + W F L EF +Y
Sbjct: 212 VGMIVGTGCNACYMEEMQNVEL--VEGDEGR---MCVNTEWGAFGDSGELDEFLLEY 263
>pdb|3FR0|A Chain A, Human Glucokinase In Complex With 2-Amino Benzamide
Activator
pdb|3A0I|X Chain X, Human Glucokinase In Complex With A Synthetic Activator
pdb|3GOI|A Chain A, Human Glucokinase In Complex With A Synthetic Activator
Length = 455
Score = 77.4 bits (189), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G+L+ WTKGFK G G NVV LL+ A+ RR +F ++VVA++NDT ++SC Y+ C+
Sbjct: 152 GILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYEDHQCE 211
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGL-EFCPQY 132
+ ++ C + N+ L EG G+ + + W F L EF +Y
Sbjct: 212 VGMIVGTGCNACYMEEMQNVEL--VEGDEGR---MCVNTEWGAFGDSGELDEFLLEY 263
>pdb|3F9M|A Chain A, Human Pancreatic Glucokinase In Complex With Glucose And
Activator Showing A Mobile Flap
pdb|3FGU|A Chain A, Catalytic Complex Of Human Glucokinase
pdb|3ID8|A Chain A, Ternary Complex Of Human Pancreatic Glucokinase
Crystallized With Activator, Glucose And Amp-Pnp
pdb|3IDH|A Chain A, Human Pancreatic Glucokinase In Complex With Glucose
pdb|3VEV|A Chain A, Glucokinase In Complex With An Activator And Glucose
pdb|3VF6|A Chain A, Glucokinase In Complex With Glucose And Activator
Length = 470
Score = 77.4 bits (189), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G+L+ WTKGFK G G NVV LL+ A+ RR +F ++VVA++NDT ++SC Y+ C+
Sbjct: 167 GILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYEDHQCE 226
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGL-EFCPQY 132
+ ++ C + N+ L EG G+ + + W F L EF +Y
Sbjct: 227 VGMIVGTGCNACYMEEMQNVEL--VEGDEGR---MCVNTEWGAFGDSGELDEFLLEY 278
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 77.0 bits (188), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 8/119 (6%)
Query: 12 CSESP---GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSC 68
C +S +L+ WTK FK GV GA+VV+LL +A+ +R ++ N+VA++NDT G +++C
Sbjct: 158 CQQSKIDEAILITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTC 217
Query: 69 AYDHKHCKIEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGLE 127
YD +HC++ ++ + +I L EG G+ + I W F LE
Sbjct: 218 GYDDQHCEVGLIIGTGTNACYMEELRHIDL--VEGDEGR---MCINTEWGAFGDDGSLE 271
Score = 74.7 bits (182), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 11 RCSESPGVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAY 70
+ S G+L+ WTKGFK VG +VV LL+ A+ RR F ++VVA++NDT G +++CAY
Sbjct: 608 QTSLDAGILITWTKGFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAY 667
Query: 71 DHKHCKIEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHF 120
+ C++ ++ + N+ + EG GQ + I W F
Sbjct: 668 EEPTCEVGLIVGTGSNACYMEEMKNVEM--VEGDQGQ---MCINMEWGAF 712
>pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
Length = 917
Score = 77.0 bits (188), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 8/119 (6%)
Query: 12 CSESP---GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSC 68
C +S +L+ WTK FK GV GA+VV+LL +A+ +R ++ N+VA++NDT G +++C
Sbjct: 158 CQQSKIDEAILITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTC 217
Query: 69 AYDHKHCKIEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGLE 127
YD +HC++ ++ + +I L EG G+ + I W F LE
Sbjct: 218 GYDDQHCEVGLIIGTGTNACYMEELRHIDL--VEGDEGR---MCINTEWGAFGDDGSLE 271
Score = 74.7 bits (182), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 11 RCSESPGVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAY 70
+ S G+L+ WTKGFK VG +VV LL+ A+ RR F ++VVA++NDT G +++CAY
Sbjct: 608 QTSLDAGILITWTKGFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAY 667
Query: 71 DHKHCKIEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHF 120
+ C++ ++ + N+ + EG GQ + I W F
Sbjct: 668 EEPTCEVGLIVGTGSNACYMEEMKNVEM--VEGDQGQ---MCINMEWGAF 712
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 77.0 bits (188), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 8/119 (6%)
Query: 12 CSESP---GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSC 68
C +S +L+ WTK FK GV GA+VV+LL +A+ +R ++ N+VA++NDT G +++C
Sbjct: 158 CQQSKIDEAILITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTC 217
Query: 69 AYDHKHCKIEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGLE 127
YD +HC++ ++ + +I L EG G+ + I W F LE
Sbjct: 218 GYDDQHCEVGLIIGTGTNACYMEELRHIDL--VEGDEGR---MCINTEWGAFGDDGSLE 271
Score = 74.7 bits (182), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 11 RCSESPGVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAY 70
+ S G+L+ WTKGFK VG +VV LL+ A+ RR F ++VVA++NDT G +++CAY
Sbjct: 608 QTSLDAGILITWTKGFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAY 667
Query: 71 DHKHCKIEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHF 120
+ C++ ++ + N+ + EG GQ + I W F
Sbjct: 668 EEPTCEVGLIVGTGSNACYMEEMKNVEM--VEGDQGQ---MCINMEWGAF 712
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 77.0 bits (188), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 8/119 (6%)
Query: 12 CSESP---GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSC 68
C +S +L+ WTK FK GV GA+VV+LL +A+ +R ++ N+VA++NDT G +++C
Sbjct: 158 CQQSKIDEAILITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTC 217
Query: 69 AYDHKHCKIEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGLE 127
YD +HC++ ++ + +I L EG G+ + I W F LE
Sbjct: 218 GYDDQHCEVGLIIGTGTNACYMEELRHIDL--VEGDEGR---MCINTEWGAFGDDGSLE 271
Score = 74.7 bits (182), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 11 RCSESPGVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAY 70
+ S G+L+ WTKGFK VG +VV LL+ A+ RR F ++VVA++NDT G +++CAY
Sbjct: 608 QTSLDAGILITWTKGFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAY 667
Query: 71 DHKHCKIEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHF 120
+ C++ ++ + N+ + EG GQ + I W F
Sbjct: 668 EEPTCEVGLIVGTGSNACYMEEMKNVEM--VEGDQGQ---MCINMEWGAF 712
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 918
Score = 75.5 bits (184), Expect = 9e-15, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 3 RQSKLSGMRCSESPGVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTA 62
RQSK+ VL+ WTK FK GV GA+VV+LL +A+ +R ++ N+VA++NDT
Sbjct: 159 RQSKID-------EAVLITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTV 211
Query: 63 GCLVSCAYDHKHCKIEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQP 122
G +++C YD + C++ ++ + +I L EG G+ + I W F
Sbjct: 212 GTMMTCGYDDQQCEVGLIIGTGTNACYMEELRHIDL--VEGDEGR---MCINTEWGAFGD 266
Query: 123 KQGLE 127
LE
Sbjct: 267 DGSLE 271
Score = 71.6 bits (174), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G+L+ WTKGFK G +V LL+ A+ RR F ++VVA++NDT G +++CAY+ C+
Sbjct: 614 GILISWTKGFKATDCEGHDVASLLRDAVKRREEFDLDVVAVVNDTVGTMMTCAYEEPTCE 673
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHF 120
I ++ + N+ + EG GQ + I W F
Sbjct: 674 IGLIVGTGTNACYMEEMKNVEM--VEGNQGQ---MCINMEWGAF 712
>pdb|3HM8|A Chain A, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|B Chain B, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|C Chain C, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|D Chain D, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
Length = 445
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G+L+ WTKGFK G +VV LL++A+ RR +NVVAI+NDT G ++SC Y+ C+
Sbjct: 143 GILLNWTKGFKASDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYEDPRCE 202
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHF 120
I ++ + N+A G G + + I W F
Sbjct: 203 IGLIVGTGTNACYMEELRNVA-----GVPGDSGRMCINMEWGAF 241
>pdb|2NZT|A Chain A, Crystal Structure Of Human Hexokinase Ii
pdb|2NZT|B Chain B, Crystal Structure Of Human Hexokinase Ii
Length = 902
Score = 73.6 bits (179), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 18 VLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKI 77
+L++WTKGFK G G +VV LL++A+ RR F ++VVA++NDT G +++C ++ HC++
Sbjct: 601 ILLKWTKGFKASGCEGEDVVTLLKEAIHRREEFDLDVVAVVNDTVGTMMTCGFEDPHCEV 660
Query: 78 EYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHF 120
++ + N+ L EG G+ + + W F
Sbjct: 661 GLIVGTGSNACYMEEMRNVEL--VEGEEGR---MCVNMEWGAF 698
Score = 73.2 bits (178), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 45/59 (76%)
Query: 19 LVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKI 77
LV WTKGFK GV G +VV L+++A+ RR +F +++VA++NDT G +++C YD +C+I
Sbjct: 154 LVSWTKGFKSSGVEGRDVVALIRKAIQRRGDFDIDIVAVVNDTVGTMMTCGYDDHNCEI 212
>pdb|3O08|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O08|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O1B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Ii
pdb|3O1W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O1W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O4W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O4W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O5B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O5B|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O6W|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O6W|B Chain B, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O80|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Ix
(Open State)
pdb|3O8M|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Xi
With Glucose Bound (Closed State)
Length = 485
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
GVL RWTKGF EGV G +VV +LQ+ + + N P+NVVA++NDT G LV+ Y K
Sbjct: 168 GVLQRWTKGFDIEGVEGHDVVPMLQEQ-IEKLNIPINVVALINDTTGTLVASLYTDPQTK 226
Query: 77 I 77
+
Sbjct: 227 M 227
>pdb|1BDG|A Chain A, Hexokinase From Schistosoma Mansoni Complexed With Glucose
Length = 451
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
LVRWTKGF +GV G NV ELLQ L +R V VA++NDT G L SCA + C
Sbjct: 155 ATLVRWTKGFSADGVEGHNVAELLQTELDKRE-LNVKCVAVVNDTVGTLASCALEDPKCA 213
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGLE 127
+ L V G + D+ + + +G + +VI W F K L+
Sbjct: 214 VG--LIVGTGTNVAYIEDSSKVELMDGV--KEPEVVINTEWGAFGEKGELD 260
>pdb|1IG8|A Chain A, Crystal Structure Of Yeast Hexokinase Pii With The Correct
Amino Acid Sequence
Length = 486
Score = 56.2 bits (134), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G+L RWTKGF + +VV +LQ+ + +R N P+ VVA++NDT G LV+ Y K
Sbjct: 169 GILQRWTKGFDIPNIENHDVVPMLQKQITKR-NIPIEVVALINDTTGTLVASYYTDPETK 227
Query: 77 I 77
+
Sbjct: 228 M 228
>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
Glucose
Length = 485
Score = 55.5 bits (132), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G+L RWTKGF V G +VV LLQ + +R P+ +VA++NDT G L++ Y K
Sbjct: 169 GILQRWTKGFDIPNVEGHDVVPLLQNEISKRE-LPIEIVALINDTVGTLIASYYTDPETK 227
Query: 77 I 77
+
Sbjct: 228 M 228
>pdb|2A6P|A Chain A, Structure Solution To 2.2 Angstrom And Functional
Characterisation Of The Open Reading Frame Rv3214 From
Mycobacterium Tuberculosis
pdb|2A6P|B Chain B, Structure Solution To 2.2 Angstrom And Functional
Characterisation Of The Open Reading Frame Rv3214 From
Mycobacterium Tuberculosis
Length = 208
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 5 SKLSGMRCSESPGVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVN-VVAILNDTAG 63
+KL+G+ +E G+L W G EG+ + E LV P VA +ND A
Sbjct: 74 AKLAGLTVNEVTGLLAEWDYG-SYEGLTTPQIRESEPDWLVWTHGCPAGESVAQVNDRAD 132
Query: 64 CLVSCAYDHKHCKIEYLLPVPCGYALQQAFDN-IALPIYEG 103
V+ A +H + +L V G+ + + LP+ EG
Sbjct: 133 SAVALALEHMSSR--DVLFVSHGHFSRAVITRWVQLPLAEG 171
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 90 QQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGLEFCPQ 131
Q+A+DNIALPI +G++ ++V R + LE PQ
Sbjct: 44 QKAWDNIALPIGQGQTISQPYMVARMT-------ELLELTPQ 78
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 79 YLLPV--PCGYALQQAFDNIALPIYEGRSGQAD 109
YL+P P GYAL Q + +LP Y GR A+
Sbjct: 138 YLVPTMNPDGYALSQEGNCESLPNYVGRGNAAN 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,227,959
Number of Sequences: 62578
Number of extensions: 154518
Number of successful extensions: 361
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 29
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)