Query psy11528
Match_columns 140
No_of_seqs 110 out of 580
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 20:42:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02405 hexokinase 100.0 3.2E-48 6.9E-53 339.0 12.9 125 6-136 177-301 (497)
2 PLN02914 hexokinase 100.0 1.7E-47 3.8E-52 333.8 12.6 124 6-136 177-300 (490)
3 PLN02362 hexokinase 100.0 2.7E-47 5.8E-52 334.0 12.4 125 6-136 177-301 (509)
4 PLN02596 hexokinase-like 100.0 4.2E-46 9.1E-51 325.2 13.0 123 6-135 178-300 (490)
5 KOG1369|consensus 100.0 2.8E-45 6E-50 317.9 10.7 126 6-135 163-288 (474)
6 PTZ00107 hexokinase; Provision 100.0 4.4E-44 9.6E-49 311.0 11.6 117 6-136 161-286 (464)
7 COG5026 Hexokinase [Carbohydra 100.0 1.2E-38 2.6E-43 273.1 11.0 125 6-135 153-279 (466)
8 PF00349 Hexokinase_1: Hexokin 99.9 4.2E-24 9E-29 169.0 5.6 67 6-72 140-206 (206)
9 PF03727 Hexokinase_2: Hexokin 99.8 2.2E-20 4.7E-25 150.3 5.1 56 74-135 1-56 (243)
10 PRK09698 D-allose kinase; Prov 94.0 0.39 8.5E-06 38.9 8.2 93 30-131 90-187 (302)
11 KOG1794|consensus 93.1 0.28 6.1E-06 41.6 6.0 69 26-95 73-141 (336)
12 COG1940 NagC Transcriptional r 92.8 0.34 7.4E-06 39.5 6.1 87 34-132 96-190 (314)
13 TIGR00744 ROK_glcA_fam ROK fam 89.0 1.3 2.7E-05 36.1 6.0 87 33-128 86-179 (318)
14 PRK13311 N-acetyl-D-glucosamin 87.7 2.5 5.5E-05 33.7 6.9 73 32-113 84-160 (256)
15 PRK05082 N-acetylmannosamine k 87.0 2.7 5.9E-05 33.9 6.8 91 32-131 84-179 (291)
16 PRK13310 N-acetyl-D-glucosamin 84.7 3.1 6.7E-05 33.8 6.1 74 32-114 84-161 (303)
17 PRK09557 fructokinase; Reviewe 84.4 2.8 6.1E-05 34.0 5.7 54 33-93 85-142 (301)
18 PRK12408 glucokinase; Provisio 76.3 6.6 0.00014 32.9 5.4 50 42-93 102-165 (336)
19 COG4071 Uncharacterized protei 69.7 5.8 0.00013 32.5 3.4 62 34-97 143-207 (278)
20 PF00480 ROK: ROK family; Int 65.0 20 0.00044 26.3 5.4 55 31-92 78-136 (179)
21 PRK00292 glk glucokinase; Prov 62.9 23 0.00049 29.0 5.8 42 51-92 91-146 (316)
22 PF01869 BcrAD_BadFG: BadF/Bad 62.5 13 0.00029 29.6 4.2 35 54-91 89-123 (271)
23 PTZ00288 glucokinase 1; Provis 59.4 16 0.00035 31.9 4.4 45 50-94 128-204 (405)
24 PRK14101 bifunctional glucokin 57.0 18 0.0004 32.9 4.6 41 50-90 105-159 (638)
25 KOG3127|consensus 55.5 9.1 0.0002 31.2 2.1 26 62-87 73-106 (230)
26 TIGR00749 glk glucokinase, pro 44.7 46 0.001 27.3 4.8 43 50-92 89-145 (316)
27 cd01817 RGS12_RBD Ubiquitin do 40.5 32 0.0007 23.2 2.6 23 33-56 19-41 (73)
28 PF04459 DUF512: Protein of un 40.3 16 0.00034 29.1 1.3 37 32-68 104-149 (204)
29 PF02685 Glucokinase: Glucokin 39.7 49 0.0011 27.8 4.2 59 50-121 90-162 (316)
30 COG2971 Predicted N-acetylgluc 33.9 98 0.0021 26.3 5.1 34 54-91 99-132 (301)
31 cd07037 TPP_PYR_MenD Pyrimidin 33.7 51 0.0011 24.9 3.1 49 33-84 20-68 (162)
32 TIGR02518 EutH_ACDH acetaldehy 31.1 75 0.0016 28.2 4.2 27 33-60 147-173 (488)
33 PRK05571 ribose-5-phosphate is 30.6 52 0.0011 24.9 2.7 61 29-90 7-75 (148)
34 cd07038 TPP_PYR_PDC_IPDC_like 30.3 58 0.0013 24.3 2.9 47 33-83 20-66 (162)
35 PF02196 RBD: Raf-like Ras-bin 29.5 57 0.0012 21.3 2.4 24 33-57 20-43 (71)
36 TIGR03278 methan_mark_10 putat 26.6 34 0.00074 29.9 1.2 38 31-69 284-322 (404)
37 PRK13930 rod shape-determining 26.2 3.5E+02 0.0075 21.9 7.1 52 36-90 115-166 (335)
38 TIGR01118 lacA galactose-6-pho 25.5 57 0.0012 24.6 2.1 59 29-90 7-72 (141)
39 PHA02436 hypothetical protein 24.2 96 0.0021 19.3 2.6 33 23-55 6-39 (52)
40 PRK07823 5'-methylthioadenosin 24.1 53 0.0012 27.1 1.9 18 71-88 2-19 (264)
41 smart00455 RBD Raf-like Ras-bi 24.0 69 0.0015 20.9 2.1 18 33-51 19-36 (70)
42 COG4567 Response regulator con 23.5 92 0.002 24.4 2.9 73 34-120 19-93 (182)
43 PRK08621 galactose-6-phosphate 23.4 67 0.0015 24.2 2.1 60 29-90 7-72 (142)
44 PF09312 SurA_N: SurA N-termin 22.8 39 0.00084 23.9 0.7 12 53-64 3-14 (118)
45 COG3895 Predicted periplasmic 22.7 53 0.0011 24.0 1.4 14 14-27 78-91 (112)
46 cd01816 Raf_RBD Ubiquitin doma 22.4 87 0.0019 21.3 2.3 25 32-57 18-42 (74)
47 cd07014 S49_SppA Signal peptid 21.7 2.4E+02 0.0052 21.0 5.0 43 38-80 58-107 (177)
48 TIGR00904 mreB cell shape dete 21.5 3.7E+02 0.0081 22.0 6.5 46 37-85 114-159 (333)
49 PF08970 Sda: Sporulation inhi 21.5 82 0.0018 19.4 1.9 20 32-52 21-40 (46)
50 PRK07524 hypothetical protein; 20.4 1.1E+02 0.0024 27.0 3.2 47 33-83 25-71 (535)
51 COG0616 SppA Periplasmic serin 20.3 1.8E+02 0.0039 24.4 4.3 44 38-82 116-169 (317)
No 1
>PLN02405 hexokinase
Probab=100.00 E-value=3.2e-48 Score=339.02 Aligned_cols=125 Identities=26% Similarity=0.387 Sum_probs=117.8
Q ss_pred CCceeeccCCCeEEEeeccceecCCCcCchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCCCCceEEEEecCCC
Q psy11528 6 KLSGMRCSESPGVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIEYLLPVPC 85 (140)
Q Consensus 6 ~f~~~q~si~~g~li~wtKgF~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~~~~~iglIlGTGt 85 (140)
.||++|+++++|+|++|||||++++++|+||+++|++||+|++ ++|+|+||||||||||++++|.+++|.||+|+||||
T Consensus 177 SFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~-l~v~v~AlvNDTVGTL~a~aY~~~~~~iG~IlGTGt 255 (497)
T PLN02405 177 SFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVG-LDMRVSALVNDTIGTLAGGRYYNPDVVAAVILGTGT 255 (497)
T ss_pred eeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcC-CCceEEEEEecCHHHHHHhhcCCCCceEEEEEeCCe
Confidence 4999999999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred ceeEEeecCCCCccccCCCCCCCCcEEEEeccCcccCCCCCCCCCcccccc
Q psy11528 86 GYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGLEFCPQYSLRF 136 (140)
Q Consensus 86 Na~Y~e~~~~i~~~k~~~~~~~~~~miINtEwG~Fg~~g~L~~~~T~fD~~ 136 (140)
|+||+|++++|+ |+++..+.+++||||||||+|+++ .|. +|+||+.
T Consensus 256 NacY~E~~~~i~--k~~~~~~~~~~miINtEwG~F~~~-~lp--~T~~D~~ 301 (497)
T PLN02405 256 NAAYVERAQAIP--KWHGLLPKSGEMVINMEWGNFRSS-HLP--LTEYDHA 301 (497)
T ss_pred eeEEEeecccCc--cccccCCCCCeEEEEeccccCCCC-CCC--CchHHHH
Confidence 999999999999 997766667899999999999864 454 9999984
No 2
>PLN02914 hexokinase
Probab=100.00 E-value=1.7e-47 Score=333.84 Aligned_cols=124 Identities=27% Similarity=0.440 Sum_probs=116.4
Q ss_pred CCceeeccCCCeEEEeeccceecCCCcCchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCCCCceEEEEecCCC
Q psy11528 6 KLSGMRCSESPGVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIEYLLPVPC 85 (140)
Q Consensus 6 ~f~~~q~si~~g~li~wtKgF~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~~~~~iglIlGTGt 85 (140)
.||++|+++++|+|++|||||.+++++|+||+++|++||+|++ ++|+|+||||||||||++++|.+++|+||+|+||||
T Consensus 177 SFP~~Q~si~~g~Li~WTKGF~~~gv~G~DVv~lL~~Al~r~~-l~v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGt 255 (490)
T PLN02914 177 SFPVKQTSIDSGILMKWTKGFAVSGTAGKDVVACLNEAMERQG-LDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGT 255 (490)
T ss_pred eeeeecCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcC-CCceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCe
Confidence 4999999999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred ceeEEeecCCCCccccCCCCCCCCcEEEEeccCcccCCCCCCCCCcccccc
Q psy11528 86 GYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGLEFCPQYSLRF 136 (140)
Q Consensus 86 Na~Y~e~~~~i~~~k~~~~~~~~~~miINtEwG~Fg~~g~L~~~~T~fD~~ 136 (140)
|+||+|++++|+ |+++..+.+++|+||||||+|++ .| ++|+||+.
T Consensus 256 NacY~E~~~~i~--k~~~~~~~~~~miINtEwG~F~~--~l--p~T~~D~~ 300 (490)
T PLN02914 256 NACYVERTDAIP--KLQGQKSSSGRTIINTEWGAFSD--GL--PLTEFDRE 300 (490)
T ss_pred eeEEEeeccccc--ccccCCCCCceEEEeccccccCC--CC--CCChHHHH
Confidence 999999999999 99876556788999999999974 34 48999984
No 3
>PLN02362 hexokinase
Probab=100.00 E-value=2.7e-47 Score=333.98 Aligned_cols=125 Identities=27% Similarity=0.379 Sum_probs=117.6
Q ss_pred CCceeeccCCCeEEEeeccceecCCCcCchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCCCCceEEEEecCCC
Q psy11528 6 KLSGMRCSESPGVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIEYLLPVPC 85 (140)
Q Consensus 6 ~f~~~q~si~~g~li~wtKgF~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~~~~~iglIlGTGt 85 (140)
.||++|+++++|+|++|||||++++++|+||+++|++||+|++ ++|+|+||||||||||+|++|.+|+|.||+|+||||
T Consensus 177 SFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~-l~v~v~AlvNDTVgTL~a~aY~~~~~~iG~IlGTGt 255 (509)
T PLN02362 177 SFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRG-LDMRVAALVNDTVGTLALGHYHDPDTVAAVIIGTGT 255 (509)
T ss_pred eeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcC-CCcEEEEEEEcCHHHHHhhhcCCCCceEEEEEECCc
Confidence 4999999999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred ceeEEeecCCCCccccCCCCCCCCcEEEEeccCcccCCCCCCCCCcccccc
Q psy11528 86 GYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGLEFCPQYSLRF 136 (140)
Q Consensus 86 Na~Y~e~~~~i~~~k~~~~~~~~~~miINtEwG~Fg~~g~L~~~~T~fD~~ 136 (140)
|+||+|++++|+ |+++..+.+++||||||||+|+++ .| ++|+||+.
T Consensus 256 NacY~E~~~~i~--k~~~~~~~~~~miINtEwG~F~~~-~l--p~T~~D~~ 301 (509)
T PLN02362 256 NACYLERTDAII--KCQGLLTTSGSMVVNMEWGNFWSS-HL--PRTSYDID 301 (509)
T ss_pred cceEeeehhhcc--cccccCCCCCcEEEEeeccCCCCC-CC--CCchHHHH
Confidence 999999999999 987766667899999999999865 45 49999973
No 4
>PLN02596 hexokinase-like
Probab=100.00 E-value=4.2e-46 Score=325.17 Aligned_cols=123 Identities=22% Similarity=0.342 Sum_probs=115.9
Q ss_pred CCceeeccCCCeEEEeeccceecCCCcCchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCCCCceEEEEecCCC
Q psy11528 6 KLSGMRCSESPGVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIEYLLPVPC 85 (140)
Q Consensus 6 ~f~~~q~si~~g~li~wtKgF~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~~~~~iglIlGTGt 85 (140)
.||++|+||++|+|++| |||++++++|+||+++|++|++|++ ++|+|+||||||||||+|++|.+++|+||+|+||||
T Consensus 178 SFP~~Q~si~~G~Li~W-KgF~~~~~vG~Dvv~lL~~Al~r~~-l~v~v~AivNDTVgTL~a~aY~~~~~~iG~I~GTGt 255 (490)
T PLN02596 178 SYPVDQAAASSGSAIKW-KSFSADDTVGKALVNDINRALEKHG-LKIRVFALVDDTIGNLAGGRYYNKDTVAAVTLGMGT 255 (490)
T ss_pred eeeeeecCCCCEEEEEe-ccccCCCccCcHHHHHHHHHHHhcC-CCceEEEEEEcCHHHHHhhhcCCCCeEEEEEEeccc
Confidence 49999999999999999 9999999999999999999999997 999999999999999999999999999999999999
Q ss_pred ceeEEeecCCCCccccCCCCCCCCcEEEEeccCcccCCCCCCCCCccccc
Q psy11528 86 GYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGLEFCPQYSLR 135 (140)
Q Consensus 86 Na~Y~e~~~~i~~~k~~~~~~~~~~miINtEwG~Fg~~g~L~~~~T~fD~ 135 (140)
|+||+|++++|+ |+++..+.+++||||||||+|+.. .| ++|+||+
T Consensus 256 NacY~E~~~~i~--k~~~~~~~~~~miINtEwG~F~~~-~l--p~T~~D~ 300 (490)
T PLN02596 256 NAAYVEPAQAIP--KWQSPSPESQEIVISTEWGNFNSC-HL--PITEFDA 300 (490)
T ss_pred ceEEEEEccccc--cccCCCCCCCeEEEEeccccCCCC-CC--CCChHHH
Confidence 999999999999 998766677899999999999843 44 4999997
No 5
>KOG1369|consensus
Probab=100.00 E-value=2.8e-45 Score=317.94 Aligned_cols=126 Identities=33% Similarity=0.587 Sum_probs=119.4
Q ss_pred CCceeeccCCCeEEEeeccceecCCCcCchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCCCCceEEEEecCCC
Q psy11528 6 KLSGMRCSESPGVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIEYLLPVPC 85 (140)
Q Consensus 6 ~f~~~q~si~~g~li~wtKgF~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~~~~~iglIlGTGt 85 (140)
.||++|+|+++|+|++|||||++++++|+||+++|++||+||+...++|+|++|||||||++|+|.+++|.||+|+||||
T Consensus 163 SfP~~Q~si~~g~L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGt 242 (474)
T KOG1369|consen 163 SFPCRQTSIDKGTLIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGT 242 (474)
T ss_pred eeeeeecccccceEEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEECCCc
Confidence 59999999999999999999999999999999999999999994459999999999999999999999999999999999
Q ss_pred ceeEEeecCCCCccccCCCCCCCCcEEEEeccCcccCCCCCCCCCccccc
Q psy11528 86 GYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGLEFCPQYSLR 135 (140)
Q Consensus 86 Na~Y~e~~~~i~~~k~~~~~~~~~~miINtEwG~Fg~~g~L~~~~T~fD~ 135 (140)
|+||+|+.++|+ |+++..... +||||||||+|+++ .++.++|+||+
T Consensus 243 NacY~e~~~~i~--k~~~~~~~~-~miIN~EWG~F~~~-~~~l~~T~yD~ 288 (474)
T KOG1369|consen 243 NACYMEDMRNIE--KVEGDAGRG-PMCINTEWGAFGDN-SLDLPRTEYDV 288 (474)
T ss_pred cceeeeeccchh--hcccccCCC-ceEEEccccCCCcc-ccccchhhHHH
Confidence 999999999999 998864443 89999999999988 89999999997
No 6
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=4.4e-44 Score=310.98 Aligned_cols=117 Identities=30% Similarity=0.417 Sum_probs=106.6
Q ss_pred CCceeeccCCCeEEEeeccceec-----CCCcCchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCC----CCce
Q psy11528 6 KLSGMRCSESPGVLVRWTKGFKC-----EGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDH----KHCK 76 (140)
Q Consensus 6 ~f~~~q~si~~g~li~wtKgF~~-----~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~----~~~~ 76 (140)
.||++|+++++|+|++|||||++ ++++|+||+++|++||+|++ ++|+|+||||||||||+|++|.+ ++|+
T Consensus 161 SFP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~-l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~ 239 (464)
T PTZ00107 161 SFPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNN-VPANVVAVLNDTVGTLISCAYQKPKNTPPCQ 239 (464)
T ss_pred eeeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcC-CCceEEEEEEcCHHHHHHHHhcCcCCCCCce
Confidence 49999999999999999999999 89999999999999999997 99999999999999999999999 9999
Q ss_pred EEEEecCCCceeEEeecCCCCccccCCCCCCCCcEEEEeccCcccCCCCCCCCCcccccc
Q psy11528 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGLEFCPQYSLRF 136 (140)
Q Consensus 77 iglIlGTGtNa~Y~e~~~~i~~~k~~~~~~~~~~miINtEwG~Fg~~g~L~~~~T~fD~~ 136 (140)
||+|+|||||+||+|+....+ ...+|+||||||+||++ | ++|+||+.
T Consensus 240 iGlIlGTG~NacY~E~~~~~~---------~~~~~iINtEwG~F~~~--l--p~T~~D~~ 286 (464)
T PTZ00107 240 VGVIIGTGSNACYFEPEVSAY---------GYAGTPINMECGNFDSK--L--PITPYDLE 286 (464)
T ss_pred EEEEEeccccceeeehhhccC---------CCCcEEEEeeccccCCC--C--CCChHHHH
Confidence 999999999999999753322 34579999999999753 4 49999984
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-38 Score=273.09 Aligned_cols=125 Identities=28% Similarity=0.416 Sum_probs=115.1
Q ss_pred CCceeeccCCCeEEEeeccceecCCCcCchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCCCCceEEEEecCCC
Q psy11528 6 KLSGMRCSESPGVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIEYLLPVPC 85 (140)
Q Consensus 6 ~f~~~q~si~~g~li~wtKgF~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~~~~~iglIlGTGt 85 (140)
.||+.|+|+++|.|++|||||++++++|+||+++|+++|++|+ ++|+|+||+|||||||+|+.|.++++.||+|+||||
T Consensus 153 SYP~~q~sin~g~l~rwTKgf~i~e~ig~dvv~~l~e~l~~r~-~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGt 231 (466)
T COG5026 153 SYPLNQTSINEGQLIRWTKGFDIPEVIGTDVVRLLQEALSARN-LPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGT 231 (466)
T ss_pred eccccccccCceeeEeecccCcchhhhhhhHHHHHHHHHHhcC-CceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCc
Confidence 4899999999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred ceeEEeecCCCCccccCCC-CCCCCcEEEEeccCcccCCC-CCCCCCccccc
Q psy11528 86 GYALQQAFDNIALPIYEGR-SGQADHLVIRKAWVHFQPKQ-GLEFCPQYSLR 135 (140)
Q Consensus 86 Na~Y~e~~~~i~~~k~~~~-~~~~~~miINtEwG~Fg~~g-~L~~~~T~fD~ 135 (140)
|+||+|+.+.|| |++.+ .+....|+||+|||.|+..- +|. +|.||.
T Consensus 232 N~~y~e~~~~ip--kl~~d~~~~~~pm~iN~EwGsfdn~~~~Lp--~t~ydv 279 (466)
T COG5026 232 NGCYCEPKGRIP--KLPRDDLPETGPMLINCEWGSFDNELSVLP--RTKYDV 279 (466)
T ss_pred cceEEeecccCC--cCccccccccCCeEEEecccccCcceeecc--ccceee
Confidence 999999999999 98854 56677899999999998531 354 788875
No 8
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=99.89 E-value=4.2e-24 Score=168.97 Aligned_cols=67 Identities=52% Similarity=0.765 Sum_probs=55.2
Q ss_pred CCceeeccCCCeEEEeeccceecCCCcCchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCC
Q psy11528 6 KLSGMRCSESPGVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDH 72 (140)
Q Consensus 6 ~f~~~q~si~~g~li~wtKgF~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~ 72 (140)
.||++|+++++|+|++|||||.+++++|+|++++|++||+|++..+|+|+||+|||||||||++|.+
T Consensus 140 SFP~~q~~~~~g~li~wtKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y~~ 206 (206)
T PF00349_consen 140 SFPVEQTSLNSGTLIRWTKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAYQD 206 (206)
T ss_dssp ESSEEESSTTEEEE----TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHTT-
T ss_pred EEEEEeccCCCeEEEEeeccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhcCC
Confidence 5999999999999999999999999999999999999999998444999999999999999999975
No 9
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=99.81 E-value=2.2e-20 Score=150.28 Aligned_cols=56 Identities=18% Similarity=0.339 Sum_probs=48.6
Q ss_pred CceEEEEecCCCceeEEeecCCCCccccCCCCCCCCcEEEEeccCcccCCCCCCCCCccccc
Q psy11528 74 HCKIEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHFQPKQGLEFCPQYSLR 135 (140)
Q Consensus 74 ~~~iglIlGTGtNa~Y~e~~~~i~~~k~~~~~~~~~~miINtEwG~Fg~~g~L~~~~T~fD~ 135 (140)
+|+||+|+|||||+||+|+.++|+ |+++ ..++||||||||+| ++++++.++|+||+
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~--~~~~---~~~~~iINtEwg~f-~~~~~~~~~t~~D~ 56 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIP--KLKG---KDGKMIINTEWGNF-DNGLLDLPRTEYDK 56 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-T--TSST---SSSEEEEEE-GGGT-TTTTTTTTS-HHHH
T ss_pred CcEEEEEEeCCeeEEEeeecccCc--cccc---cCCeEEEEeecCCC-CCCCccCCCCcccH
Confidence 589999999999999999999999 8877 66899999999999 56788889999997
No 10
>PRK09698 D-allose kinase; Provisional
Probab=93.96 E-value=0.39 Score=38.94 Aligned_cols=93 Identities=15% Similarity=0.092 Sum_probs=57.3
Q ss_pred CCcCchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccC---CCCceEEEEecCCCceeEEeecCCCCccccCCCCC
Q psy11528 30 GVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD---HKHCKIEYLLPVPCGYALQQAFDNIALPIYEGRSG 106 (140)
Q Consensus 30 ~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~---~~~~~iglIlGTGtNa~Y~e~~~~i~~~k~~~~~~ 106 (140)
+..+.++.+.|++.+ + +| +.+.||.-+..++-.+. ..+..+.+.+|||.-++++..=+-+. -..+...
T Consensus 90 ~~~~~~l~~~l~~~~---~-~p---v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtGIG~giv~~G~~~~--G~~g~ag 160 (302)
T PRK09698 90 ALDLYDLADKLENTL---N-CP---VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTGMGFAVWMNGAPWT--GAHGVAG 160 (302)
T ss_pred ccccCCHHHHHHHHh---C-CC---EEEcchHhHHHHHHHHhcCCCCceEEEEEecCceEEEEEECCEEee--CCCCCcc
Confidence 345567888777665 3 44 56799998876654322 34578889999999999997532211 1112233
Q ss_pred CCCcEEEEe--ccCcccCCCCCCCCCc
Q psy11528 107 QADHLVIRK--AWVHFQPKQGLEFCPQ 131 (140)
Q Consensus 107 ~~~~miINt--EwG~Fg~~g~L~~~~T 131 (140)
.-++|.++- +....|..|+|+.+.+
T Consensus 161 EiGh~~v~~~~~~C~CG~~gclE~~~S 187 (302)
T PRK09698 161 ELGHIPLGDMTQHCGCGNPGCLETNCS 187 (302)
T ss_pred ccCceEeeCCCcccCCCCccchHhhcC
Confidence 456787753 2333456677765544
No 11
>KOG1794|consensus
Probab=93.05 E-value=0.28 Score=41.63 Aligned_cols=69 Identities=10% Similarity=0.036 Sum_probs=46.5
Q ss_pred eecCCCcCchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCCCCceEEEEecCCCceeEEeecCC
Q psy11528 26 FKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIEYLLPVPCGYALQQAFDN 95 (140)
Q Consensus 26 F~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~~~~~iglIlGTGtNa~Y~e~~~~ 95 (140)
...+++.-.|-++.|.+-|..+.---.+=..|-||++++|.++- .-..-=|-||-|||+||=...|-..
T Consensus 73 L~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t-~g~~~GiVLiaGTgs~crl~~~DGs 141 (336)
T KOG1794|consen 73 LGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAAT-PGGEGGIVLIAGTGSNCRLVNPDGS 141 (336)
T ss_pred eecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcC-CCCCCcEEEEecCCceeEEECCCCC
Confidence 44556666666677777775543122344788999999998873 3335667899999999866655433
No 12
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.77 E-value=0.34 Score=39.53 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=62.3
Q ss_pred chHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCC----CCceEEEEecCCCceeEEeecCCCCccccCCC---CC
Q psy11528 34 ANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDH----KHCKIEYLLPVPCGYALQQAFDNIALPIYEGR---SG 106 (140)
Q Consensus 34 ~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~----~~~~iglIlGTGtNa~Y~e~~~~i~~~k~~~~---~~ 106 (140)
-|+.+.|++.+. +|| .|-||+.+..++-++.. .+..+-+.+|||.-++++..=. .+.+. ..
T Consensus 96 ~~l~~~L~~~~~----~Pv---~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGIG~giv~~g~-----l~~G~~g~ag 163 (314)
T COG1940 96 VDLAEELEARLG----LPV---FVENDANAAALAEAWFGAGRGIDDVVYITLGTGIGGGIIVNGK-----LLRGANGNAG 163 (314)
T ss_pred ccHHHHHHHHHC----CCE---EEecHHHHHHHHHHHhCCCCCCCCEEEEEEccceeEEEEECCE-----EeecCCCccc
Confidence 467777776652 555 55999999988888753 5789999999999999998742 12232 23
Q ss_pred CCCcEEEEeccC-cccCCCCCCCCCcc
Q psy11528 107 QADHLVIRKAWV-HFQPKQGLEFCPQY 132 (140)
Q Consensus 107 ~~~~miINtEwG-~Fg~~g~L~~~~T~ 132 (140)
.-++|+++-... ..|..|+|+.+.+.
T Consensus 164 e~Gh~~v~~~g~c~cG~~GclE~~as~ 190 (314)
T COG1940 164 EIGHMVVDPDGECGCGRRGCLETYASG 190 (314)
T ss_pred cccceEECCCCccCCCCCCchHHhccH
Confidence 356899988886 77778888765443
No 13
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=88.95 E-value=1.3 Score=36.12 Aligned_cols=87 Identities=13% Similarity=0.049 Sum_probs=51.1
Q ss_pred CchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhccc----CCCCceEEEEecCCCceeEEeecCCCCccccCCCCCCC
Q psy11528 33 GANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAY----DHKHCKIEYLLPVPCGYALQQAFDNIALPIYEGRSGQA 108 (140)
Q Consensus 33 G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y----~~~~~~iglIlGTGtNa~Y~e~~~~i~~~k~~~~~~~~ 108 (140)
+.++.+.|++.+ + +| +.+.||+-+..++-.+ .+.+..+-+.+|||..++++..=.-+. -..+....=
T Consensus 86 ~~~l~~~l~~~~---~-~p---v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGiG~giv~~G~~~~--G~~g~agEi 156 (318)
T TIGR00744 86 QEPLKEKVEARV---G-LP---VVVENDANAAALGEYKKGAGKGARDVICITLGTGLGGGIIINGEIRH--GHNGVGAEI 156 (318)
T ss_pred CCCHHHHHHHHH---C-CC---EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCccEEEEEECCEEee--cCCCCCccc
Confidence 346666666544 2 44 5689999887665443 345778999999999999986532111 111112344
Q ss_pred CcEEEEecc---CcccCCCCCCC
Q psy11528 109 DHLVIRKAW---VHFQPKQGLEF 128 (140)
Q Consensus 109 ~~miINtEw---G~Fg~~g~L~~ 128 (140)
++|.++-+- ..-|..|+|+.
T Consensus 157 Gh~~v~~~g~~~C~cG~~gclE~ 179 (318)
T TIGR00744 157 GHIRMVPDGRLLCNCGKQGCIET 179 (318)
T ss_pred CceEeCCCCCcccCCCCcchHHH
Confidence 577775321 12244455543
No 14
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=87.67 E-value=2.5 Score=33.65 Aligned_cols=73 Identities=19% Similarity=0.158 Sum_probs=48.7
Q ss_pred cCchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccC----CCCceEEEEecCCCceeEEeecCCCCccccCCCCCC
Q psy11528 32 VGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD----HKHCKIEYLLPVPCGYALQQAFDNIALPIYEGRSGQ 107 (140)
Q Consensus 32 ~G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~----~~~~~iglIlGTGtNa~Y~e~~~~i~~~k~~~~~~~ 107 (140)
.+.++.+.|++.+ + +| +.+-||.-+.-++-.+. +.+..+.+.+|||.-++.+..=.-+. -..+....
T Consensus 84 ~~~~l~~~l~~~~---~-~p---V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtGiG~giv~~G~l~~--G~~g~AGE 154 (256)
T PRK13311 84 MGQPLQADLSRLI---Q-RE---VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTGVGGGLIVNGSIVS--GRNHITGE 154 (256)
T ss_pred cCCChHHHHHHHH---C-CC---EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcCeEEEEEECCEEec--CCCCCCcc
Confidence 4568888777666 3 44 56799988776665553 35788999999999999997642111 11122345
Q ss_pred CCcEEE
Q psy11528 108 ADHLVI 113 (140)
Q Consensus 108 ~~~miI 113 (140)
-++|.+
T Consensus 155 iGh~~v 160 (256)
T PRK13311 155 FGHFRL 160 (256)
T ss_pred ceeEEe
Confidence 567877
No 15
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=87.05 E-value=2.7 Score=33.89 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=55.7
Q ss_pred cCchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhccc---CCCCceEEEEecCCCceeEEeecCCCCccccCCCCCCC
Q psy11528 32 VGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAY---DHKHCKIEYLLPVPCGYALQQAFDNIALPIYEGRSGQA 108 (140)
Q Consensus 32 ~G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y---~~~~~~iglIlGTGtNa~Y~e~~~~i~~~k~~~~~~~~ 108 (140)
.+.|+.+.|++.+ + +| +.+.||.-+..++-.+ .+.+..+-+-+|||..++++..=.-.. -..+....-
T Consensus 84 ~~~~l~~~l~~~~---~-~p---v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~GiG~giv~~G~~~~--G~~g~AGEi 154 (291)
T PRK05082 84 LHFPLVQTLEQLT---D-LP---TIALNDAQAAAWAEYQALPDDIRNMVFITVSTGVGGGIVLNGKLLT--GPGGLAGHI 154 (291)
T ss_pred cCCChHHHHHHHh---C-CC---EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCCcceEEEECCEEee--CCCCccccc
Confidence 3556766666543 3 44 4679999887766543 245678899999999999997642111 111223344
Q ss_pred CcEEEEec--cCcccCCCCCCCCCc
Q psy11528 109 DHLVIRKA--WVHFQPKQGLEFCPQ 131 (140)
Q Consensus 109 ~~miINtE--wG~Fg~~g~L~~~~T 131 (140)
++|.++-+ ...-|..|+|+.+.+
T Consensus 155 Gh~~v~~~g~~c~CG~~GclE~~~S 179 (291)
T PRK05082 155 GHTLADPHGPVCGCGRRGCVEAIAS 179 (291)
T ss_pred cceEecCCCCCCCCCCcCchhhhcC
Confidence 67887532 223355667765444
No 16
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=84.74 E-value=3.1 Score=33.77 Aligned_cols=74 Identities=20% Similarity=0.131 Sum_probs=47.6
Q ss_pred cCchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccC----CCCceEEEEecCCCceeEEeecCCCCccccCCCCCC
Q psy11528 32 VGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD----HKHCKIEYLLPVPCGYALQQAFDNIALPIYEGRSGQ 107 (140)
Q Consensus 32 ~G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~----~~~~~iglIlGTGtNa~Y~e~~~~i~~~k~~~~~~~ 107 (140)
.+-++.+.|++.+ + +| +.+-||.-+..++-.+. +.+..+.+.+|||.-++++..=.-+. -..+....
T Consensus 84 ~~~~l~~~l~~~~---~-~p---V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGiG~giv~~G~l~~--G~~g~aGE 154 (303)
T PRK13310 84 SGKPLRADLSARL---G-RD---VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVFNGKPIS--GRSYITGE 154 (303)
T ss_pred cCCcHHHHHHHHH---C-CC---eEEeccHhHHHHHHhhhccccCCCcEEEEEecCceEEEEEECCEEee--CCCCcccc
Confidence 3456777776554 3 44 45799998766655443 45788899999999999998642211 11222334
Q ss_pred CCcEEEE
Q psy11528 108 ADHLVIR 114 (140)
Q Consensus 108 ~~~miIN 114 (140)
-++|.|+
T Consensus 155 iGH~~v~ 161 (303)
T PRK13310 155 FGHMRLP 161 (303)
T ss_pred ccceeec
Confidence 5678775
No 17
>PRK09557 fructokinase; Reviewed
Probab=84.44 E-value=2.8 Score=34.04 Aligned_cols=54 Identities=22% Similarity=0.199 Sum_probs=39.3
Q ss_pred CchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhccc----CCCCceEEEEecCCCceeEEeec
Q psy11528 33 GANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAY----DHKHCKIEYLLPVPCGYALQQAF 93 (140)
Q Consensus 33 G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y----~~~~~~iglIlGTGtNa~Y~e~~ 93 (140)
+.++.+.|++.+ + +| +.+.||..+..++-.+ .+++..+-+.+|||.-++.+..=
T Consensus 85 ~~~l~~~l~~~~---~-~p---v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtGiG~giv~~G 142 (301)
T PRK09557 85 GQPLDKDLSARL---N-RE---VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTGCGAGVAING 142 (301)
T ss_pred CCCHHHHHHHHH---C-CC---EEEccchhHHHHHHHHhcccCCCCcEEEEEEccceEEEEEECC
Confidence 457777777666 3 44 4579999987666544 24567789999999999999763
No 18
>PRK12408 glucokinase; Provisional
Probab=76.30 E-value=6.6 Score=32.90 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=36.7
Q ss_pred HHHHHhCCCCceEEEEEechHHHHHhcccC-------------CC-CceEEEEecCCCceeEEeec
Q psy11528 42 QALVRRSNFPVNVVAILNDTAGCLVSCAYD-------------HK-HCKIEYLLPVPCGYALQQAF 93 (140)
Q Consensus 42 ~al~r~~~~~v~v~aivNDTVatlls~~y~-------------~~-~~~iglIlGTGtNa~Y~e~~ 93 (140)
+.|+++ +.+..+.+.||.-+.-++-.+. .. ...+.+.+|||...+.+..-
T Consensus 102 ~~l~~~--~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTGiGggivi~g 165 (336)
T PRK12408 102 EQIRAQ--LGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTGLGAALWIPN 165 (336)
T ss_pred HHHHHH--cCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCcceEEEEEcC
Confidence 445444 3455578899999998887665 12 46788889999999999754
No 19
>COG4071 Uncharacterized protein conserved in archaea [Function unknown]
Probab=69.74 E-value=5.8 Score=32.54 Aligned_cols=62 Identities=19% Similarity=0.170 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHHhCCCCceEEEEEechHHHH-Hhccc-C-CCCceEEEEecCCCceeEEeecCCCC
Q psy11528 34 ANVVELLQQALVRRSNFPVNVVAILNDTAGCL-VSCAY-D-HKHCKIEYLLPVPCGYALQQAFDNIA 97 (140)
Q Consensus 34 ~dv~~lL~~al~r~~~~~v~v~aivNDTVatl-ls~~y-~-~~~~~iglIlGTGtNa~Y~e~~~~i~ 97 (140)
+.+.++|.+.++|+ +-++|+.++-||=+|+ +-+.| + -|-..=|+|-|||.-.=..-++....
T Consensus 143 ~~vA~el~~Ei~rr--~GvDV~v~v~DTDaTY~iLg~yFT~lp~a~pgI~sgtGv~Gfl~GRl~~~t 207 (278)
T COG4071 143 KKVAEELYKEIKRR--LGVDVVVMVADTDATYRILGFYFTALPYAIPGIISGTGVFGFLLGRLADVT 207 (278)
T ss_pred HHHHHHHHHHHHHH--hCCceEEEEecCchHHHHHHHHHhhccccCCCeecccchHHHHHHHhhccc
Confidence 45778999999888 4788889999999996 22333 2 24555588999987543333444433
No 20
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=64.99 E-value=20 Score=26.32 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=41.3
Q ss_pred CcCchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccC----CCCceEEEEecCCCceeEEee
Q psy11528 31 VVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD----HKHCKIEYLLPVPCGYALQQA 92 (140)
Q Consensus 31 ~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~----~~~~~iglIlGTGtNa~Y~e~ 92 (140)
..+.++.+.|++.+ + + .+.+.||..+..++-.+. ..+..+-+-+|+|.-++++..
T Consensus 78 ~~~~~l~~~l~~~~---~-~---pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~GiG~~ii~~ 136 (179)
T PF00480_consen 78 WENIPLKEELEERF---G-V---PVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTGIGAGIIIN 136 (179)
T ss_dssp GTTCEHHHHHHHHH---T-S---EEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSSEEEEEEET
T ss_pred cccCCHHHHhhccc---c-e---EEEEecCCCcceeehhhcCccCCcceEEEEEeecCCCcceecc
Confidence 44578888888777 2 3 457799999876665442 346788889999999999964
No 21
>PRK00292 glk glucokinase; Provisional
Probab=62.86 E-value=23 Score=29.00 Aligned_cols=42 Identities=10% Similarity=-0.121 Sum_probs=31.6
Q ss_pred CceEEEEEechHHHHHhcccC------------C--CCceEEEEecCCCceeEEee
Q psy11528 51 PVNVVAILNDTAGCLVSCAYD------------H--KHCKIEYLLPVPCGYALQQA 92 (140)
Q Consensus 51 ~v~v~aivNDTVatlls~~y~------------~--~~~~iglIlGTGtNa~Y~e~ 92 (140)
.+..+.+.||.-+.-++-.+. . .+..+.+.+|||..++.+..
T Consensus 91 ~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGiG~giv~~ 146 (316)
T PRK00292 91 GLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGLGVAGLVP 146 (316)
T ss_pred CCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcceEEEEEe
Confidence 454467899999888775431 1 25678889999999999966
No 22
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=62.53 E-value=13 Score=29.59 Aligned_cols=35 Identities=17% Similarity=0.002 Sum_probs=27.4
Q ss_pred EEEEEechHHHHHhcccCCCCceEEEEecCCCceeEEe
Q psy11528 54 VVAILNDTAGCLVSCAYDHKHCKIEYLLPVPCGYALQQ 91 (140)
Q Consensus 54 v~aivNDTVatlls~~y~~~~~~iglIlGTGtNa~Y~e 91 (140)
-+.+.||.+..|.++.- ..-|-+|-|||+++..+.
T Consensus 89 ~v~~~~Da~~al~~~~~---~~giv~I~GTGS~~~~~~ 123 (271)
T PF01869_consen 89 EVIVVNDAAIALYGATA---EDGIVVIAGTGSIAYGRD 123 (271)
T ss_dssp EEEEEEHHHHHHHHHST---SSEEEEEESSSEEEEEEE
T ss_pred EEEEEHHHHHHhCCCCC---CcEEEEEcCCCceEEEEE
Confidence 44788999877766544 367889999999998874
No 23
>PTZ00288 glucokinase 1; Provisional
Probab=59.37 E-value=16 Score=31.93 Aligned_cols=45 Identities=18% Similarity=0.095 Sum_probs=31.4
Q ss_pred CCceEEEEEechHHHHHhcccCC--------------------------------CCceEEEEecCCCceeEEeecC
Q psy11528 50 FPVNVVAILNDTAGCLVSCAYDH--------------------------------KHCKIEYLLPVPCGYALQQAFD 94 (140)
Q Consensus 50 ~~v~v~aivNDTVatlls~~y~~--------------------------------~~~~iglIlGTGtNa~Y~e~~~ 94 (140)
++..-+.+|||=.|.=.+..... ....+-+-+|||...|++.+..
T Consensus 128 ~~~~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~~~g~~~~~~~~~Vlg~GTGLG~alli~~~ 204 (405)
T PTZ00288 128 FPPGRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSSLIHYVG 204 (405)
T ss_pred cCCCeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCCCCcccCCCCCEEEEEeccceeEEEEECCe
Confidence 56677899999887744433221 1234778999999999997653
No 24
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=56.99 E-value=18 Score=32.89 Aligned_cols=41 Identities=12% Similarity=0.091 Sum_probs=25.8
Q ss_pred CCceEEEEEechHHHHHhc--------ccC----CCCceEEEEecC--CCceeEE
Q psy11528 50 FPVNVVAILNDTAGCLVSC--------AYD----HKHCKIEYLLPV--PCGYALQ 90 (140)
Q Consensus 50 ~~v~v~aivNDTVatlls~--------~y~----~~~~~iglIlGT--GtNa~Y~ 90 (140)
+.+.++.+.||.-+.-++- .+. .....+.+++|| |...|.+
T Consensus 105 ~g~~~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~~~~~~~~~~lGtGTGlG~a~l 159 (638)
T PRK14101 105 LGFDTLLVVNDFTALAMALPGLTDAQRVQVGGGTRRQNSVIGLLGPGTGLGVSGL 159 (638)
T ss_pred cCCCeEEEEchHHHHHcCCccCCHHHeEEeCCCCCCCCCcEEEEECCccceeeEE
Confidence 3566789999999987773 111 123456788755 5564434
No 25
>KOG3127|consensus
Probab=55.47 E-value=9.1 Score=31.19 Aligned_cols=26 Identities=4% Similarity=-0.023 Sum_probs=22.3
Q ss_pred HHHHHhcccCCCCceEE--------EEecCCCce
Q psy11528 62 AGCLVSCAYDHKHCKIE--------YLLPVPCGY 87 (140)
Q Consensus 62 Vatlls~~y~~~~~~ig--------lIlGTGtNa 87 (140)
+|.|.|-+-.+|++.|| .|+|||-|.
T Consensus 73 iA~LsA~RSkDpntqVGaCiv~~~n~iVg~GYNg 106 (230)
T KOG3127|consen 73 IAFLSAKRSKDPNTQVGACIVDRENRIVGTGYNG 106 (230)
T ss_pred HHHHHHHhccCcccceeeEEEcCCCEEEEeccCC
Confidence 78899999999999999 477888776
No 26
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=44.66 E-value=46 Score=27.31 Aligned_cols=43 Identities=16% Similarity=0.002 Sum_probs=27.5
Q ss_pred CCceEEEEEechHHHHHhc--------ccCC----CCceEEEEe--cCCCceeEEee
Q psy11528 50 FPVNVVAILNDTAGCLVSC--------AYDH----KHCKIEYLL--PVPCGYALQQA 92 (140)
Q Consensus 50 ~~v~v~aivNDTVatlls~--------~y~~----~~~~iglIl--GTGtNa~Y~e~ 92 (140)
+.+..+.|.||.-+.-++- .+.. .+..+.+++ |||...+.+.+
T Consensus 89 ~g~~~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~~~~v~lGtGtG~G~~~vi~ 145 (316)
T TIGR00749 89 LGFSHLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEGKPIAILGAGTGLGVAHLIH 145 (316)
T ss_pred cCCCeEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCCCcEEEEecCCCceeeEEEE
Confidence 3454578899998888774 3321 244578889 55556655653
No 27
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=40.50 E-value=32 Score=23.22 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=18.6
Q ss_pred CchHHHHHHHHHHHhCCCCceEEE
Q psy11528 33 GANVVELLQQALVRRSNFPVNVVA 56 (140)
Q Consensus 33 G~dv~~lL~~al~r~~~~~v~v~a 56 (140)
|..+.+.|..++++|+ ++..-++
T Consensus 19 G~ti~d~L~kllekRg-l~~~~~~ 41 (73)
T cd01817 19 GESIRDLLSGLCEKRG-INYAAVD 41 (73)
T ss_pred CCCHHHHHHHHHHHcC-CChhHEE
Confidence 7899999999999998 6644433
No 28
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=40.28 E-value=16 Score=29.09 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=25.3
Q ss_pred cCchHHHHHHHHHHHh---CCCCceEEEEEec------hHHHHHhc
Q psy11528 32 VGANVVELLQQALVRR---SNFPVNVVAILND------TAGCLVSC 68 (140)
Q Consensus 32 ~G~dv~~lL~~al~r~---~~~~v~v~aivND------TVatlls~ 68 (140)
.|.-....|+..+++. ..++++|++|-|+ |||-|+++
T Consensus 104 TG~la~~~l~~~~~~l~~~~~~~v~V~~V~N~fFG~~ItVaGLLTg 149 (204)
T PF04459_consen 104 TGVLAYPFLKPLVEKLNRIPGLEVEVVPVKNRFFGGTITVAGLLTG 149 (204)
T ss_pred eeHHHHHHHHHHHHHHhccCCCeEEEEEeecCCCCCCeEEeeCccH
Confidence 4566666666666555 3489999999999 45555544
No 29
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=39.68 E-value=49 Score=27.79 Aligned_cols=59 Identities=14% Similarity=-0.040 Sum_probs=37.6
Q ss_pred CCceEEEEEechHHHHHhcccC-------------CCCceEEE-EecCCCceeEEeecCCCCccccCCCCCCCCcEEEEe
Q psy11528 50 FPVNVVAILNDTAGCLVSCAYD-------------HKHCKIEY-LLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRK 115 (140)
Q Consensus 50 ~~v~v~aivNDTVatlls~~y~-------------~~~~~igl-IlGTGtNa~Y~e~~~~i~~~k~~~~~~~~~~miINt 115 (140)
+.++-+.+|||=.|.-.+.-.. .+.....+ =.|||.+.|++.+.. ....++-+
T Consensus 90 lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a~l~~~~-------------~~~~v~~s 156 (316)
T PF02685_consen 90 LGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVALLVPDG-------------DGYYVLPS 156 (316)
T ss_dssp CT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEEEEEEET-------------TEEEEEEE
T ss_pred hCCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEEEEEecC-------------CceEeCCC
Confidence 4566689999988874332221 12334433 379999999998852 24569999
Q ss_pred ccCccc
Q psy11528 116 AWVHFQ 121 (140)
Q Consensus 116 EwG~Fg 121 (140)
|.|+-.
T Consensus 157 EgGH~~ 162 (316)
T PF02685_consen 157 EGGHVD 162 (316)
T ss_dssp -GGGSB
T ss_pred cccccc
Confidence 999875
No 30
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=33.88 E-value=98 Score=26.29 Aligned_cols=34 Identities=15% Similarity=-0.100 Sum_probs=23.8
Q ss_pred EEEEEechHHHHHhcccCCCCceEEEEecCCCceeEEe
Q psy11528 54 VVAILNDTAGCLVSCAYDHKHCKIEYLLPVPCGYALQQ 91 (140)
Q Consensus 54 v~aivNDTVatlls~~y~~~~~~iglIlGTGtNa~Y~e 91 (140)
-+.|.||....|.++-..++-+ =+|+||| ++|+-
T Consensus 99 ~v~v~~Dg~iAl~ga~~~~~Gi--i~i~GTG--Si~~~ 132 (301)
T COG2971 99 KVDVENDGLIALRGALGDDDGI--IVIAGTG--SIGYG 132 (301)
T ss_pred eEEEecChHHHHhhccCCCCCE--EEEecCC--eEEEE
Confidence 6788999999998886655432 2577888 55553
No 31
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=33.65 E-value=51 Score=24.91 Aligned_cols=49 Identities=4% Similarity=0.047 Sum_probs=35.7
Q ss_pred CchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCCCCceEEEEecCC
Q psy11528 33 GANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIEYLLPVP 84 (140)
Q Consensus 33 G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~~~~~iglIlGTG 84 (140)
|.....++.. +.+. -.++.+...+...|.+|+..|..-.-+.|+++.|.
T Consensus 20 G~~~~~l~~a-l~~~--~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~ 68 (162)
T cd07037 20 GSRSAPLALA-AAEH--PEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTS 68 (162)
T ss_pred CcchHHHHHH-HHhC--CCceEEeccChHHHHHHHHHHHHhhCCCEEEEECC
Confidence 4455555554 4333 35899999999999999999987666778766653
No 32
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=31.08 E-value=75 Score=28.21 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=22.2
Q ss_pred CchHHHHHHHHHHHhCCCCceEEEEEec
Q psy11528 33 GANVVELLQQALVRRSNFPVNVVAILND 60 (140)
Q Consensus 33 G~dv~~lL~~al~r~~~~~v~v~aivND 60 (140)
..-++++|++++.+.| +|-.++.+|..
T Consensus 147 ~~~~~~~l~~~l~eaG-lP~gvv~~v~g 173 (488)
T TIGR02518 147 IIETVKLMRKAAEEAG-APEGAIGCITV 173 (488)
T ss_pred HHHHHHHHHHHHHHcC-cCcccEEEEcC
Confidence 3456778999999998 99999999974
No 33
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=30.62 E-value=52 Score=24.92 Aligned_cols=61 Identities=13% Similarity=-0.002 Sum_probs=38.3
Q ss_pred CCCcCchHHHHHHHHHHHhCCCCce-EEEEEec------hHHHHHhcccCCCCceEEE-EecCCCceeEE
Q psy11528 29 EGVVGANVVELLQQALVRRSNFPVN-VVAILND------TAGCLVSCAYDHKHCKIEY-LLPVPCGYALQ 90 (140)
Q Consensus 29 ~~~~G~dv~~lL~~al~r~~~~~v~-v~aivND------TVatlls~~y~~~~~~igl-IlGTGtNa~Y~ 90 (140)
+|--|-++.+.|.+.|+.+| ..|. +-.--.| -+|..++.+-.+..+.-|+ |+|||.-++..
T Consensus 7 sDhaG~~lK~~l~~~L~~~g-~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~sia 75 (148)
T PRK05571 7 SDHAGFELKEEIIEHLEELG-HEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIA 75 (148)
T ss_pred eCCchHHHHHHHHHHHHHCC-CEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHH
Confidence 45567899999999999998 3332 2111112 2344555555555565565 99999877655
No 34
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=30.28 E-value=58 Score=24.26 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=35.0
Q ss_pred CchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCCCCceEEEEecC
Q psy11528 33 GANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIEYLLPV 83 (140)
Q Consensus 33 G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~~~~~iglIlGT 83 (140)
|.....++ +++.+. -.++++...|-..|.+|+..|..-. ..|+++.|
T Consensus 20 G~~~~~l~-~al~~~--~~i~~i~~rhE~~A~~mA~gyar~t-~~gv~~~t 66 (162)
T cd07038 20 GDYNLPLL-DAIEEN--PGLRWVGNCNELNAGYAADGYARVK-GLGALVTT 66 (162)
T ss_pred CccHHHHH-HHHhhc--CCceEEeeCCHHHHHHHHHHHHHhh-CCEEEEEc
Confidence 44555554 456443 3699999999999999999997755 68887776
No 35
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=29.45 E-value=57 Score=21.33 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=17.7
Q ss_pred CchHHHHHHHHHHHhCCCCceEEEE
Q psy11528 33 GANVVELLQQALVRRSNFPVNVVAI 57 (140)
Q Consensus 33 G~dv~~lL~~al~r~~~~~v~v~ai 57 (140)
|+.+.+.|..++++|+ ++..-+.+
T Consensus 20 g~ti~d~L~~~~~kr~-L~~~~~~V 43 (71)
T PF02196_consen 20 GMTIRDALSKACKKRG-LNPECCDV 43 (71)
T ss_dssp TSBHHHHHHHHHHTTT---CCCEEE
T ss_pred CCCHHHHHHHHHHHcC-CCHHHEEE
Confidence 7899999999999998 66544333
No 36
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=26.60 E-value=34 Score=29.89 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=27.8
Q ss_pred CcCchHHHHHHHHHHHhCC-CCceEEEEEechHHHHHhcc
Q psy11528 31 VVGANVVELLQQALVRRSN-FPVNVVAILNDTAGCLVSCA 69 (140)
Q Consensus 31 ~~G~dv~~lL~~al~r~~~-~~v~v~aivNDTVatlls~~ 69 (140)
+.|.-+...|++.+++.+. +.|+|++|.|| |+-|+++.
T Consensus 284 vtG~~a~~~~~~~~~~l~~~~~v~v~~v~n~-VagLlTg~ 322 (404)
T TIGR03278 284 ITGRVAAPFIREIFRALGGGDLVNVVPVKKD-IACLITED 322 (404)
T ss_pred EEEEecHHHHHHHHHHHhcCceEEEEEecCc-ccccchHH
Confidence 4567777777777766542 56999999999 77777653
No 37
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=26.22 E-value=3.5e+02 Score=21.94 Aligned_cols=52 Identities=6% Similarity=0.023 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCCCCceEEEEecCCCceeEE
Q psy11528 36 VVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIEYLLPVPCGYALQ 90 (140)
Q Consensus 36 v~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~~~~~iglIlGTGtNa~Y~ 90 (140)
-.+.+.+++++. .++.+.++|..+|.++++.....+..-++|+--|-..+-+
T Consensus 115 ~r~~~~~~~e~~---g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdv 166 (335)
T PRK13930 115 ERRAVREAAEHA---GAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEV 166 (335)
T ss_pred HHHHHHHHHHHc---CCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEE
Confidence 345666666554 4677899999999888765543333335666655544443
No 38
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=25.55 E-value=57 Score=24.59 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=36.6
Q ss_pred CCCcCchHHHHHHHHHHHhCCCCc-eEEEEEechH-----HHHHhcccCCCCceEEE-EecCCCceeEE
Q psy11528 29 EGVVGANVVELLQQALVRRSNFPV-NVVAILNDTA-----GCLVSCAYDHKHCKIEY-LLPVPCGYALQ 90 (140)
Q Consensus 29 ~~~~G~dv~~lL~~al~r~~~~~v-~v~aivNDTV-----atlls~~y~~~~~~igl-IlGTGtNa~Y~ 90 (140)
+|--|-++.+.|.+.|+.+| ..| ++-+ +|++ |.-++.+-.......|+ |+|||.-++-.
T Consensus 7 sDh~G~~lK~~i~~~L~~~G-~eV~D~G~--~~~~dYpd~a~~va~~V~~~e~~~GIliCGtGiG~sia 72 (141)
T TIGR01118 7 SDLAGKRLKDVIKNFLVDNG-FEVIDVTE--GDGQDFVDVTLAVASEVQKDEQNLGIVIDAYGAGSFMV 72 (141)
T ss_pred eCcchHHHHHHHHHHHHHCC-CEEEEcCC--CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhh
Confidence 34557889999999999998 433 2222 4542 22233333344565565 99999877765
No 39
>PHA02436 hypothetical protein
Probab=24.18 E-value=96 Score=19.30 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=25.3
Q ss_pred ccceecCCCcCc-hHHHHHHHHHHHhCCCCceEE
Q psy11528 23 TKGFKCEGVVGA-NVVELLQQALVRRSNFPVNVV 55 (140)
Q Consensus 23 tKgF~~~~~~G~-dv~~lL~~al~r~~~~~v~v~ 55 (140)
-|||-++++-|. .+-+.++++.++.-.+.|+|.
T Consensus 6 y~gfiiKE~yGeRkIEEVFeE~YE~~YG~~vKV~ 39 (52)
T PHA02436 6 YKGFIIKETYGERNIEEVFKEAYESFYGVEVKVV 39 (52)
T ss_pred eccEEeehhhchhhHHHHHHHHHHHhcCeEEEEE
Confidence 489999998776 777888888877744777764
No 40
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=24.06 E-value=53 Score=27.08 Aligned_cols=18 Identities=0% Similarity=-0.252 Sum_probs=14.9
Q ss_pred CCCCceEEEEecCCCcee
Q psy11528 71 DHKHCKIEYLLPVPCGYA 88 (140)
Q Consensus 71 ~~~~~~iglIlGTGtNa~ 88 (140)
.++...+|+|+|||..-.
T Consensus 2 ~~~~p~igII~GSGl~~l 19 (264)
T PRK07823 2 HNNGAMLGVIGGSGFYSF 19 (264)
T ss_pred CCCCceEEEEeccccchh
Confidence 357889999999999764
No 41
>smart00455 RBD Raf-like Ras-binding domain.
Probab=24.05 E-value=69 Score=20.94 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=16.3
Q ss_pred CchHHHHHHHHHHHhCCCC
Q psy11528 33 GANVVELLQQALVRRSNFP 51 (140)
Q Consensus 33 G~dv~~lL~~al~r~~~~~ 51 (140)
|+.+.+.|+.++++|+ ++
T Consensus 19 g~tl~e~L~~~~~kr~-l~ 36 (70)
T smart00455 19 GKTVRDALAKALKKRG-LN 36 (70)
T ss_pred CCCHHHHHHHHHHHcC-CC
Confidence 7899999999999998 55
No 42
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=23.45 E-value=92 Score=24.43 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=49.9
Q ss_pred chHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCCC--CceEEEEecCCCceeEEeecCCCCccccCCCCCCCCcE
Q psy11528 34 ANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHK--HCKIEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHL 111 (140)
Q Consensus 34 ~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~~--~~~iglIlGTGtNa~Y~e~~~~i~~~k~~~~~~~~~~m 111 (140)
.....-|..||.+|| +.|.+.. ++.-.++.+-..+ -..+-+=||-|.-...++.+.... .+.+|
T Consensus 19 ~~f~~~LaRa~e~RG-f~v~~a~----~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~---------~d~ri 84 (182)
T COG4567 19 TPFLRTLARAMERRG-FAVVTAE----SVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERR---------ADMRI 84 (182)
T ss_pred hHHHHHHHHHHhccC-ceeEeec----cHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcC---------CcceE
Confidence 356788999999999 7775543 3444443333332 356778888888888888775543 45689
Q ss_pred EEEeccCcc
Q psy11528 112 VIRKAWVHF 120 (140)
Q Consensus 112 iINtEwG~F 120 (140)
+|=|-+|+.
T Consensus 85 vvLTGy~sI 93 (182)
T COG4567 85 VVLTGYASI 93 (182)
T ss_pred EEEecchHH
Confidence 998888765
No 43
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=23.40 E-value=67 Score=24.22 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=36.8
Q ss_pred CCCcCchHHHHHHHHHHHhCCCCceEEEEEech-----HHHHHhcccCCCCceEEE-EecCCCceeEE
Q psy11528 29 EGVVGANVVELLQQALVRRSNFPVNVVAILNDT-----AGCLVSCAYDHKHCKIEY-LLPVPCGYALQ 90 (140)
Q Consensus 29 ~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDT-----Vatlls~~y~~~~~~igl-IlGTGtNa~Y~ 90 (140)
+|--|.++.+.|.+.|+.+| ..|.=..- +|+ +|.-++.+-.......|+ |+|||.-++..
T Consensus 7 sDhaG~~lK~~l~~~L~~~G-~eV~D~G~-~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~sia 72 (142)
T PRK08621 7 ADKAGFELKEVVKDYLEDNK-YEVVDVTE-EGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFMV 72 (142)
T ss_pred eCcchHHHHHHHHHHHHHCC-CEEEECCC-CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhhhhh
Confidence 45568899999999999998 43321111 332 222334433344455565 99999888765
No 44
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=22.80 E-value=39 Score=23.93 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=8.9
Q ss_pred eEEEEEechHHH
Q psy11528 53 NVVAILNDTAGC 64 (140)
Q Consensus 53 ~v~aivNDTVat 64 (140)
+|+|||||.+=|
T Consensus 3 ~IvAvVn~eiIt 14 (118)
T PF09312_consen 3 RIVAVVNDEIIT 14 (118)
T ss_dssp -EEEEESSSEEE
T ss_pred eEEEEECCcCcC
Confidence 589999998644
No 45
>COG3895 Predicted periplasmic protein [General function prediction only]
Probab=22.71 E-value=53 Score=24.01 Aligned_cols=14 Identities=36% Similarity=0.748 Sum_probs=11.2
Q ss_pred CCCeEEEeecccee
Q psy11528 14 ESPGVLVRWTKGFK 27 (140)
Q Consensus 14 i~~g~li~wtKgF~ 27 (140)
..+|+.+.||||=+
T Consensus 78 Ya~G~YvwWsKG~~ 91 (112)
T COG3895 78 YADGIYVWWSKGDE 91 (112)
T ss_pred ccCcEEEEEeCCCc
Confidence 35799999999943
No 46
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=22.41 E-value=87 Score=21.26 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=19.8
Q ss_pred cCchHHHHHHHHHHHhCCCCceEEEE
Q psy11528 32 VGANVVELLQQALVRRSNFPVNVVAI 57 (140)
Q Consensus 32 ~G~dv~~lL~~al~r~~~~~v~v~ai 57 (140)
-|+.+.+-|.+||++|+ +.-+.++|
T Consensus 18 pG~tl~daL~KaLk~R~-l~pe~C~V 42 (74)
T cd01816 18 PGMTLRDALAKALKVRG-LQPECCAV 42 (74)
T ss_pred CCcCHHHHHHHHHHHcC-CChhHeEE
Confidence 38899999999999998 66555444
No 47
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=21.71 E-value=2.4e+02 Score=20.99 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCceEEEEEe---chHHHHHhcccC----CCCceEEEE
Q psy11528 38 ELLQQALVRRSNFPVNVVAILN---DTAGCLVSCAYD----HKHCKIEYL 80 (140)
Q Consensus 38 ~lL~~al~r~~~~~v~v~aivN---DTVatlls~~y~----~~~~~iglI 80 (140)
+.+.+++.+....+..|+|.+| .+.|+.++++-. .|.+.++++
T Consensus 58 ~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~i~a~~~a~~~~~ 107 (177)
T cd07014 58 EVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANYIVANPSTLVGSI 107 (177)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCEEEECCCCeEEEe
Confidence 3456666555346778999999 455556555433 578888775
No 48
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=21.48 E-value=3.7e+02 Score=21.97 Aligned_cols=46 Identities=2% Similarity=0.060 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCCCCceEEEEecCCC
Q psy11528 37 VELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIEYLLPVPC 85 (140)
Q Consensus 37 ~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~~~~~iglIlGTGt 85 (140)
.+.++++++.. .++++.++|+.+|..++......+..-++|+--|.
T Consensus 114 r~~~~~~~~~a---g~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~ 159 (333)
T TIGR00904 114 RRAVKESALSA---GAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGG 159 (333)
T ss_pred HHHHHHHHHHc---CCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCC
Confidence 44566666555 46788999999999886554332233345544443
No 49
>PF08970 Sda: Sporulation inhibitor A; InterPro: IPR015064 Members of this protein group contain two antiparallel alpha helices that are linked by a highly structured inter-helix loop to form a helical hairpin; the structure is stabilised by numerous hydrophobic and electrostatic interactions. These sporulation inhibitors are antikinases that bind to the histidine kinase KinA phosphotransfer domain and act as a molecular barricade that inhibit productive interaction between the ATP binding site and the phosphorylatable KinA His residue. This results in the inhibition of sporulation (by preventing phosphorylation of spo0A) []. ; PDB: 3FYR_B 1PV0_A.
Probab=21.46 E-value=82 Score=19.42 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=15.1
Q ss_pred cCchHHHHHHHHHHHhCCCCc
Q psy11528 32 VGANVVELLQQALVRRSNFPV 52 (140)
Q Consensus 32 ~G~dv~~lL~~al~r~~~~~v 52 (140)
...|..++|.+.+.||+ ++.
T Consensus 21 L~~dFI~Ll~~Ei~rR~-L~~ 40 (46)
T PF08970_consen 21 LDPDFIRLLEEEIQRRS-LKH 40 (46)
T ss_dssp --HHHHHHHHHHHHHCT--TT
T ss_pred CCHHHHHHHHHHHHHcC-Ccc
Confidence 46789999999999998 554
No 50
>PRK07524 hypothetical protein; Provisional
Probab=20.44 E-value=1.1e+02 Score=26.98 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=34.6
Q ss_pred CchHHHHHHHHHHHhCCCCceEEEEEechHHHHHhcccCCCCceEEEEecC
Q psy11528 33 GANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCKIEYLLPV 83 (140)
Q Consensus 33 G~dv~~lL~~al~r~~~~~v~v~aivNDTVatlls~~y~~~~~~iglIlGT 83 (140)
|-.+..++ +++.+. .++.+...|.++|.+||..|..-.-+.|+++.|
T Consensus 25 G~~~~~~~-dal~~~---~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t 71 (535)
T PRK07524 25 GVHTVELY-RGLAGS---GIRHVTPRHEQGAGFMADGYARVSGKPGVCFII 71 (535)
T ss_pred CcchHHHH-HHHhhc---CCcEEEeccHHHHHHHHHHHHHHhCCCeEEEEC
Confidence 44555555 455433 588999999999999999998766667776654
No 51
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=20.30 E-value=1.8e+02 Score=24.35 Aligned_cols=44 Identities=25% Similarity=0.224 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCceEEEEEechH---HHHHhcccC----CCCceE---EEEec
Q psy11528 38 ELLQQALVRRSNFPVNVVAILNDTA---GCLVSCAYD----HKHCKI---EYLLP 82 (140)
Q Consensus 38 ~lL~~al~r~~~~~v~v~aivNDTV---atlls~~y~----~~~~~i---glIlG 82 (140)
+.+.+++++....+ .|++.++|-. |+|+|++-. +|.+.+ |+|.+
T Consensus 116 ~~i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~ 169 (317)
T COG0616 116 ELIARALKRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISG 169 (317)
T ss_pred HHHHHHHHHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEe
Confidence 34555555554333 6888888854 568887765 576655 55666
Done!