RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11528
(140 letters)
>gnl|CDD|201171 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2.7.1.1)
contains two structurally similar domains represented by
this family and pfam03727. Some members of the family
have two copies of each of these domains.
Length = 205
Score = 87.4 bits (217), Expect = 2e-22
Identities = 31/55 (56%), Positives = 42/55 (76%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD 71
G+L+RWTKGFK GV G +VV LLQ+A+ RR ++VVA++NDT G L++CAY
Sbjct: 150 GILIRWTKGFKISGVEGHDVVPLLQEAIKRRGIPDIDVVAVVNDTVGTLMACAYT 204
>gnl|CDD|240270 PTZ00107, PTZ00107, hexokinase; Provisional.
Length = 464
Score = 74.3 bits (183), Expect = 1e-16
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
Query: 17 GVLVRWTKGFK-----CEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYD 71
+L+ WTKGF+ + V G +V ELL A +R+N P NVVA+LNDT G L+SCAY
Sbjct: 172 AILIDWTKGFETGRATNDPVEGKDVGELLNDAF-KRNNVPANVVAVLNDTVGTLISCAYQ 230
>gnl|CDD|227359 COG5026, COG5026, Hexokinase [Carbohydrate transport and
metabolism].
Length = 466
Score = 64.7 bits (158), Expect = 4e-13
Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAY 70
G L+RWTKGF V+G +VV LLQ+AL R N P+ VVA++NDT G L++ Y
Sbjct: 164 GQLIRWTKGFDIPEVIGTDVVRLLQEALSAR-NLPIRVVAVINDTTGTLLASVY 216
>gnl|CDD|215206 PLN02362, PLN02362, hexokinase.
Length = 509
Score = 59.1 bits (143), Expect = 3e-11
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 13 SESPGVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDH 72
S S G+L++WTKGF +VG +V E LQ AL RR + V A++NDT G L A H
Sbjct: 184 SISSGILIKWTKGFAISDMVGKDVAECLQGALNRR-GLDMRVAALVNDTVGTL---ALGH 239
Query: 73 KH 74
H
Sbjct: 240 YH 241
>gnl|CDD|215226 PLN02405, PLN02405, hexokinase.
Length = 497
Score = 52.5 bits (126), Expect = 6e-09
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 10 MRCSESPGVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCA 69
+ S S G L++WTKGF + VG +VV L +A+ R + V A++NDT G L
Sbjct: 181 KQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAM-ERVGLDMRVSALVNDTIGTLAGGR 239
Query: 70 YDHKHCKIEYLLPVPCGYALQQAF--DNIALPIYEGRSGQADHLVIRKAWVHFQ 121
Y + + + V G A+ A+P + G ++ +VI W +F+
Sbjct: 240 YYNP----DVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFR 289
>gnl|CDD|178502 PLN02914, PLN02914, hexokinase.
Length = 490
Score = 50.7 bits (121), Expect = 3e-08
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAY 70
G+L++WTKGF G G +VV L +A+ R+ + V A++NDT G L Y
Sbjct: 188 GILMKWTKGFAVSGTAGKDVVACLNEAMERQG-LDMRVSALVNDTVGTLAGARY 240
>gnl|CDD|223536 COG0460, ThrA, Homoserine dehydrogenase [Amino acid transport and
metabolism].
Length = 333
Score = 31.8 bits (73), Expect = 0.091
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 30 GVVGANVVELL---QQALVRRSNFPVNVVAILN 59
G VG+ V+E+L Q+ L +R+ + VVA+ +
Sbjct: 12 GTVGSGVLEILAEKQEELRKRAGIEIRVVAVAD 44
>gnl|CDD|235783 PRK06349, PRK06349, homoserine dehydrogenase; Provisional.
Length = 426
Score = 28.9 bits (66), Expect = 0.87
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 30 GVVGANVVELLQ---QALVRRSNFPVNVVAIL 58
G VG+ VV +L+ + + R+ P+ + +
Sbjct: 12 GTVGSGVVRILEENAEEIAARAGRPIEIKKVA 43
>gnl|CDD|184143 PRK13561, PRK13561, putative diguanylate cyclase; Provisional.
Length = 651
Score = 27.4 bits (61), Expect = 2.8
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 37 VELLQQALVRRSNFPVNVVAI--LNDTAGCL 65
+ LL+Q + R+ + ++ L DTAG L
Sbjct: 246 MALLEQVVARKQTTALMIITCETLRDTAGVL 276
>gnl|CDD|221193 pfam11735, CAP59_mtransfer, Cryptococcal mannosyltransferase 1.
The capsule of pathogenic fungi is a complex
polysaccharide whose formation is determined by a number
of enzymes including, most importantly,
alpha-1,3-mannosyltransferase 1, EC:2.4.1.-.
Length = 244
Score = 26.1 bits (58), Expect = 7.0
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 74 HCKIEYLLPVPCGYALQQAF-----DNIALPIYEGRSG 106
H E +LP G A+ + +N+ + IYE SG
Sbjct: 9 HWNNEEILPDLWGAAVVELIRLLGPENVFVSIYESGSG 46
>gnl|CDD|112583 pfam03777, DUF320, Small secreted domain (DUF320). Small domain
found in a family of secreted streptomyces proteins. It
occurs singly or as a pair. Many of the domains have
two cysteines that may form a disulphide bridge.
Length = 60
Score = 24.2 bits (53), Expect = 9.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 30 GVVGANVVELLQQALVRRSNFPVNVVAILNDTAG 63
GV+ NVV++ V VNVV +LN G
Sbjct: 21 GVLSGNVVQVPVHVPVNVCGNTVNVVGLLNPAFG 54
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.140 0.448
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,975,896
Number of extensions: 595138
Number of successful extensions: 518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 19
Length of query: 140
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 53
Effective length of database: 7,078,804
Effective search space: 375176612
Effective search space used: 375176612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.5 bits)