RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11528
(140 letters)
>1cza_N Hexokinase type I; structurally homologous domains, transferase;
HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3
c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A*
1hkc_A* 1bg3_A* 2nzt_A*
Length = 917
Score = 91.3 bits (226), Expect = 1e-22
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
+L+ WTK FK GV GA+VV+LL +A+ +R ++ N+VA++NDT G +++C YD +HC+
Sbjct: 166 AILITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYDDQHCE 225
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHF 120
+ ++ + +I + G + I W F
Sbjct: 226 VGLIIGTGTNACYMEELRHI-----DLVEGDEGRMCINTEWGAF 264
Score = 87.9 bits (217), Expect = 2e-21
Identities = 29/61 (47%), Positives = 44/61 (72%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G+L+ WTKGFK VG +VV LL+ A+ RR F ++VVA++NDT G +++CAY+ C+
Sbjct: 614 GILITWTKGFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYEEPTCE 673
Query: 77 I 77
+
Sbjct: 674 V 674
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus,
mutation, glycolysis, nucleotide-binding, transfera;
HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A*
3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A*
3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X*
1v4t_A*
Length = 470
Score = 89.0 bits (220), Expect = 7e-22
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G+L+ WTKGFK G G NVV LL+ A+ RR +F ++VVA++NDT ++SC Y+ C+
Sbjct: 167 GILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYEDHQCE 226
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHF 120
+ ++ C + N+ E G + + W F
Sbjct: 227 VGMIVGTGCNACYMEEMQNV-----ELVEGDEGRMCVNTEWGAF 265
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase,
structural genomics consortium, SGC, A enzyme,
ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo
sapiens}
Length = 445
Score = 84.7 bits (209), Expect = 2e-20
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G+L+ WTKGFK G +VV LL++A+ RR +NVVAI+NDT G ++SC Y+ C+
Sbjct: 143 GILLNWTKGFKASDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYEDPRCE 202
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHF 120
I ++ + N+ G G + + I W F
Sbjct: 203 IGLIVGTGTNACYMEELRNV-----AGVPGDSGRMCINMEWGAF 241
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma
mansoni} SCOP: c.55.1.3 c.55.1.3
Length = 451
Score = 84.3 bits (208), Expect = 3e-20
Identities = 37/104 (35%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
LVRWTKGF +GV G NV ELLQ L +R V VA++NDT G L SCA + C
Sbjct: 155 ATLVRWTKGFSADGVEGHNVAELLQTELDKR-ELNVKCVAVVNDTVGTLASCALEDPKCA 213
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHF 120
+ + G A+ + + + +VI W F
Sbjct: 214 VG----LIVGTGTNVAYIEDSSKVELMDGVKEPEVVINTEWGAF 253
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression
binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A
{Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A*
3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Length = 485
Score = 83.9 bits (207), Expect = 5e-20
Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
GVL RWTKGF EGV G +VV +LQ+ + + N P+NVVA++NDT G LV+ Y K
Sbjct: 168 GVLQRWTKGFDIEGVEGHDVVPMLQEQIEKL-NIPINVVALINDTTGTLVASLYTDPQTK 226
Query: 77 I 77
+
Sbjct: 227 M 227
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG;
2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB:
1hkg_A
Length = 457
Score = 53.6 bits (128), Expect = 2e-09
Identities = 17/104 (16%), Positives = 26/104 (25%), Gaps = 3/104 (2%)
Query: 17 GVLVRWTKGFKCEGVVGANVVELLQQALVRRSNFPVNVVAILNDTAGCLVSCAYDHKHCK 76
G + F ++ + A VA + D+ G L Y K
Sbjct: 148 GQITXQAXAFSLAX--LXKLISAMXNAXFPA-GDXXXSVADIXDSHGILXXVNYTDAXIK 204
Query: 77 IEYLLPVPCGYALQQAFDNIALPIYEGRSGQADHLVIRKAWVHF 120
+ + A I G G A + I F
Sbjct: 205 MGIIFGSGVNAAYWCDSTXIGDAADGGXXGGAGXMXICCDQSSF 248
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics,
center for structural genomics, JCSG, protein structure
INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 33.3 bits (77), Expect = 0.015
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 30 GVVGANVVELLQQALVRRSNFPVNVVAIL 58
G VG NV+ ++ + RRS F + VV +
Sbjct: 13 GNVGLNVLRIIDASNRRRSAFSIKVVGVS 41
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS
protein structure initiative, midwest center for
structural genomics; HET: MSE; 1.90A {Thermoplasma
volcanium GSS1} PDB: 3jsa_A*
Length = 331
Score = 31.4 bits (72), Expect = 0.060
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 30 GVVGANVVELLQ-QALVRRSNFPVNVVAIL 58
G VG N++ +++ R NVV +
Sbjct: 15 GNVGLNLLRIIRSFNEENRLGLKFNVVFVA 44
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural
genomics, midwest cente structural genomics; 2.15A
{Thiobacillus denitrificans}
Length = 444
Score = 30.3 bits (69), Expect = 0.16
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 30 GVVGANVVELLQQ---ALVRRSNFPVNVVAIL 58
G VG + +L++ + RR+ + VV
Sbjct: 19 GTVGGGTLTVLRRNAEEITRRAGREIRVVRAA 50
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase;
1.70A {Thermus thermophilus}
Length = 332
Score = 29.8 bits (68), Expect = 0.23
Identities = 5/31 (16%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 30 GVVGANVVELLQ--QALVRRSNFPVNVVAIL 58
G VG+ L+ + + +L
Sbjct: 12 GTVGSAFYNLVLERAEELSAFGVVPRFLGVL 42
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.26
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 28/102 (27%)
Query: 39 LLQQA----LVRRSNF-PVNVVAILNDTAGC---LVSCA-----------YDHKHCKIEY 79
++Q A + F P + + L G LV+ + I
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 80 LLPVPCGYALQQAFDNIALPI------YEGRSGQADH-LVIR 114
L + G +A+ N +LP E G L I
Sbjct: 303 LFFI--GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Score = 26.9 bits (59), Expect = 3.3
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 34/81 (41%)
Query: 74 HCKIEYLLPVPCG---YA--LQQAF-------------DN---------------IALPI 100
H +E++L VP A LQ+ F D+ ++ +
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 101 YEGRSGQADHLVIRKAWVHFQ 121
+ GQ D V+ F+
Sbjct: 73 EPSKVGQFDQ-VLNLCLTEFE 92
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer,
oxidoreductase; HET: NAD; 2.30A {Saccharomyces
cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A*
1q7g_A*
Length = 358
Score = 26.8 bits (60), Expect = 2.8
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 30 GVVGANVVELLQQALVRRSNFPVNVVAILN 59
GVVG+ ++ L +S N+V +
Sbjct: 13 GVVGSAFLDQLLA---MKSTITYNLVLLAE 39
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine
dehydrogenase, structural G joint center for structural
genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Length = 327
Score = 26.0 bits (58), Expect = 5.2
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 30 GVVGANVVELLQQ---ALVRRSNFPVNVVAIL 58
G VG V ELL + + + V A+
Sbjct: 11 GTVGQGVAELLIRKREEIEKAIG-EFKVTAVA 41
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 25.4 bits (56), Expect = 8.4
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 51 PVNVVAILNDTAG-CLVSCAYDHK 73
PV V + G L SC+YD K
Sbjct: 57 PVWRVDWAHPKFGTILASCSYDGK 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.448
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,146,168
Number of extensions: 115049
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 20
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.2 bits)