BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11529
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 292 bits (748), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 135/230 (58%), Positives = 168/230 (73%), Gaps = 7/230 (3%)
Query: 5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA 64
+SF + P++ HAWN R Q+A PNN EVH+Y EK+ N W Q+ L H+ +VTGIDWA
Sbjct: 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIY--EKSGNKWVQVHELKEHNGQVTGIDWA 61
Query: 65 PNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL 124
P++NRIVTC DRNAYVWT + WKPTLV+LRINRAA CV+W+P E KFA GSG+R+
Sbjct: 62 PDSNRIVTCGTDRNAYVWTLKG--RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 119
Query: 125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESA 184
IS+CYFE ENDWWV KHIKKPI+ST+ LDWHPN+ LL GS DFK R+FSAYIK++E
Sbjct: 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 179
Query: 185 PQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSI 234
P T WGSK G + E SSS GW+H V FS +G+++ W SHD ++
Sbjct: 180 PAPTPWGSKMPFGELMFE---SSSSCGWVHGVCFSANGSRVAWVSHDSTV 226
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 134/230 (58%), Positives = 168/230 (73%), Gaps = 7/230 (3%)
Query: 5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA 64
+SF + P++ HAWN R Q+A PNN EVH+Y EK+ N W Q+ L H+ +VTG+DWA
Sbjct: 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIY--EKSGNKWVQVHELKEHNGQVTGVDWA 61
Query: 65 PNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL 124
P++NRIVTC DRNAYVWT + WKPTLV+LRINRAA CV+W+P E KFA GSG+R+
Sbjct: 62 PDSNRIVTCGTDRNAYVWTLKG--RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 119
Query: 125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESA 184
IS+CYFE ENDWWV KHIKKPI+ST+ LDWHPN+ LL GS DFK R+FSAYIK++E
Sbjct: 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 179
Query: 185 PQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSI 234
P T WGSK G + E SSS GW+H V FS +G+++ W SHD ++
Sbjct: 180 PAPTPWGSKMPFGELMFE---SSSSCGWVHGVCFSANGSRVAWVSHDSTV 226
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 115/226 (50%), Positives = 148/226 (65%), Gaps = 7/226 (3%)
Query: 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI 70
P HA+N+ R + T +V LY E+ N W HD VT +DWAP +NRI
Sbjct: 13 PSYEHAFNSQRTEFVTTTATNQVELY--EQDGNGWKHARTFSDHDKIVTCVDWAPKSNRI 70
Query: 71 VTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYF 130
VTCS DRNAYV+ + D WK TLVLLR+NRAAT V+WSP E+KFA GSGAR+ISVCYF
Sbjct: 71 VTCSQDRNAYVY-EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYF 129
Query: 131 ESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNW 190
E ENDWWV+KH+K+P++STI LDWHPNN LL G D K V SAY++D+++ P+++ W
Sbjct: 130 EQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVW 189
Query: 191 GSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
GS+ E + GGW+H+V FS GN L + HD S+ +
Sbjct: 190 GSRLPFNTVCAEYPS----GGWVHAVGFSPSGNALAYAGHDSSVTI 231
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 38 YEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVL 97
++K +D+ + L+GH+ +V + WAP+ N + TCS D++ +VW + +D +++ VL
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED-EYECVSVL 146
Query: 98 LRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP 157
+ V W P + A+ S + + Y E E+D WV + +ST+ L + P
Sbjct: 147 NSHTQDVKHVVWHPSQELLASASYDDTVKL-YREEEDD-WVCCATLEGHESTVWSLAFDP 204
Query: 158 NNHLLGCGSTDFKVRVFSAYI 178
+ L S D VR++ Y+
Sbjct: 205 SGQRLASCSDDRTVRIWRQYL 225
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 27/230 (11%)
Query: 16 AWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-DGHDLKVTGIDWAPNTNRIVTCS 74
AWN LA ++ + ++ E + W VL +GH V + W+P N + + S
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTE--GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80
Query: 75 ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEN 134
D +W +N DD ++ L V W+P N A S + + V + E+
Sbjct: 81 FDATTCIWKKNQDD--FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138
Query: 135 DWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKS 194
++ + + + + WHP+ LL S D V+++ + +W +
Sbjct: 139 EYECVSVLNSHTQD-VKHVVWHPSQELLASASYDDTVKLYRE---------EEDDWVCCA 188
Query: 195 TLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVLP 244
TL E + S+ + S+AF G +L S D + VR+ +Q LP
Sbjct: 189 TL-----EGHEST-----VWSLAFDPSGQRLASCSDDRT--VRIWRQYLP 226
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 8/182 (4%)
Query: 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL---DGHDLKVTGIDWAPN 66
+ + AW LA + V ++ E++A+ ++D+L +GH+ +V G+ W+ +
Sbjct: 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND 118
Query: 67 TNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLIS 126
+ TCS D++ ++W + ++++ VL ++ V W P E A+ S +
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVR 178
Query: 127 VCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL--LGCGSTDFKVRVFSAYIKDIESA 184
+ ++ +D W + + T+ D+ + L GS D VRV+ Y+ D E
Sbjct: 179 I--WKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK-YMGDDEDD 235
Query: 185 PQ 186
Q
Sbjct: 236 QQ 237
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 5/145 (3%)
Query: 43 NDWSQLDVLD--GHDLKVTGIDWAPNTNRIVTCSADRNAYVWT-QNNDDKKWKPTL--VL 97
+D++ +DVLD H + + W P+T+ + S D +W + + D+ ++ L ++
Sbjct: 44 DDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII 103
Query: 98 LRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP 157
V WS A S + + + + + + + + + + WHP
Sbjct: 104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163
Query: 158 NNHLLGCGSTDFKVRVFSAYIKDIE 182
+ LL S D VR++ Y D E
Sbjct: 164 SEALLASSSYDDTVRIWKDYDDDWE 188
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 50 VLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKW 109
+L GH+ + +D+ P+ +++V+ S DR +W D + + L I T V
Sbjct: 160 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW-----DLRTGQCSLTLSIEDGVTTVAV 214
Query: 110 SPLENKF-AAGSGARLISVCYFESENDWWVAK 140
SP + K+ AAGS R + V ++SE + V +
Sbjct: 215 SPGDGKYIAAGSLDRAVRV--WDSETGFLVER 244
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 18 NNTRQQLAFTPNNQE--VHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT---NRIVT 72
N T++ F + V +++Y A + L+GH V + W+P + + +
Sbjct: 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226
Query: 73 CSADRNAYVWTQNNDDKKWKPTLV 96
S DR +WTQ+N+ WK TL+
Sbjct: 227 VSQDRTCIIWTQDNEQGPWKKTLL 250
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA-PNTNRIV-TCSADRNA 79
++LA +++ + +++ E + +D L GH+ V +DWA P I+ +CS D
Sbjct: 24 KRLATCSSDKTIKIFEVEGETH--KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81
Query: 80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE 113
+W + N +W V + + V+W+P E
Sbjct: 82 LIWKEENG--RWSQIAVHAVHSASVNSVQWAPHE 113
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 37/97 (38%)
Query: 50 VLDGHDLKVTGIDWAPNT-------------NRIVTCSADRNAYVWTQNND--------- 87
++D H + V WAP T + VT AD +W N+D
Sbjct: 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 201
Query: 88 ---------DKKWKPTLVLLR-----INRAATCVKWS 110
D W PT VLLR +++ TC+ W+
Sbjct: 202 LEGHSDWVRDVAWSPT-VLLRSYLASVSQDRTCIIWT 237
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 18 NNTRQQLAFTPNNQE--VHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT---NRIVT 72
N T++ F + V +++Y A + L+GH V + W+P + + +
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 73 CSADRNAYVWTQNNDDKKWKPTLV 96
S DR +WTQ+N+ WK TL+
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLL 248
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA-PNTNRIV-TCSADRNA 79
++LA +++ + +++ E + +D L GH+ V +DWA P I+ +CS D
Sbjct: 22 KRLATCSSDKTIKIFEVEGETH--KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE 113
+W + N +W V + + V+W+P E
Sbjct: 80 LIWKEENG--RWSQIAVHAVHSASVNSVQWAPHE 111
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 37/97 (38%)
Query: 50 VLDGHDLKVTGIDWAPNT-------------NRIVTCSADRNAYVWTQNND--------- 87
++D H + V WAP T + VT AD +W N+D
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 88 ---------DKKWKPTLVLLR-----INRAATCVKWS 110
D W PT VLLR +++ TC+ W+
Sbjct: 200 LEGHSDWVRDVAWSPT-VLLRSYLASVSQDRTCIIWT 235
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 18 NNTRQQLAFTPNNQE--VHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT---NRIVT 72
N T++ F + V +++Y A + L+GH V + W+P + + +
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224
Query: 73 CSADRNAYVWTQNNDDKKWKPTLV 96
S DR +WTQ+N+ WK TL+
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLL 248
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA-PNTNRIV-TCSADRNA 79
+++A +++ + +++ E + +D L GH+ V +DWA P I+ +CS D
Sbjct: 22 KRMATCSSDKTIKIFEVEGETH--KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE 113
+W + N +W V + + V+W+P E
Sbjct: 80 MIWKEENG--RWSQIAVHAVHSASVNSVQWAPHE 111
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 37/97 (38%)
Query: 50 VLDGHDLKVTGIDWAPNT-------------NRIVTCSADRNAYVWTQNND--------- 87
++D H + V WAP T + VT AD +W N+D
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 88 ---------DKKWKPTLVLLR-----INRAATCVKWS 110
D W PT VLLR +++ TC+ W+
Sbjct: 200 LEGHSDWVRDVAWSPT-VLLRSYMASVSQDRTCIIWT 235
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 18 NNTRQQLAFTPNNQE--VHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT---NRIVT 72
N T++ F + V +++Y A + L+GH V + W+P + + +
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 73 CSADRNAYVWTQNNDDKKWKPTLV 96
S DR +WTQ+N+ WK TL+
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLL 248
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA-PNTNRIV-TCSADRNA 79
++LA +++ + +++ E + +D L GH+ V +DWA P I+ +CS D
Sbjct: 22 KRLATCSSDKTIKIFEVEGETHKL--IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE 113
+W + N +W V + + V+W+P E
Sbjct: 80 LIWKEENG--RWSQIAVHAVHSASVNSVQWAPHE 111
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 37/97 (38%)
Query: 50 VLDGHDLKVTGIDWAPNT-------------NRIVTCSADRNAYVWTQNND--------- 87
++D H + V WAP T + VT AD +W N+D
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 88 ---------DKKWKPTLVLLR-----INRAATCVKWS 110
D W PT VLLR +++ TC+ W+
Sbjct: 200 LEGHSDWVRDVAWSPT-VLLRSYLASVSQDRTCIIWT 235
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 18 NNTRQQLAFTPNNQE--VHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT---NRIVT 72
N T++ F + V +++Y A + L+GH V + W+P + +
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXAS 224
Query: 73 CSADRNAYVWTQNNDDKKWKPTLV 96
S DR +WTQ+N+ WK TL+
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLL 248
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA-PNTNRIV-TCSADRNA 79
++ A +++ + +++ E + +D L GH+ V +DWA P I+ +CS D
Sbjct: 22 KRXATCSSDKTIKIFEVEGETH--KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE 113
+W + N +W V + + V+W+P E
Sbjct: 80 XIWKEENG--RWSQIAVHAVHSASVNSVQWAPHE 111
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 36/217 (16%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQ----LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNA 79
+AF+P+ Q + +K W++ L L GH V G+ ++P+ I + S D+
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 409
Query: 80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVA 139
+W +N + L + + V +SP + A+ S + + + + +
Sbjct: 410 KLWNRNG-----QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLT 464
Query: 140 KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC 199
H S++ + + P+ + S D V++++ G
Sbjct: 465 GH-----SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-------------------GQL 500
Query: 200 LVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
L L SS + VAFS DG + S D ++ +
Sbjct: 501 LQTLTGHSSS---VRGVAFSPDGQTIASASDDKTVKL 534
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 91/238 (38%), Gaps = 37/238 (15%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQ----LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNA 79
+AF+P+ Q + +K W++ L L GH V G+ ++P+ I + S D+
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 81
Query: 80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS----------GARLISVCY 129
+W +N + L + + V +SP A+ S +L+
Sbjct: 82 KLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 136
Query: 130 FESENDWWVAKHIKKPIKSTI-------TCLDWHPNNHLL----GCGSTDFKVRVFSAYI 178
S + W VA P TI T W+ N LL G S+ + V FS
Sbjct: 137 GHSSSVWGVA---FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV-AFSPDG 192
Query: 179 KDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
+ I SA + G L L SS + VAFS DG + S D ++ +
Sbjct: 193 QTIASASDDKTVKLWNRNGQLLQTLTGHSSS---VRGVAFSPDGQTIASASDDKTVKL 247
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQ----LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNA 79
+AF+P+ Q + +K W++ L L GH V G+ ++P+ I + S D+
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532
Query: 80 YVWTQN 85
+W +N
Sbjct: 533 KLWNRN 538
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 83/217 (38%), Gaps = 36/217 (16%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQ----LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNA 79
+AF+P+ Q + +K W++ L L GH V G+ + P+ I + S D+
Sbjct: 227 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286
Query: 80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVA 139
+W +N + L + + V +SP A+ S + + + ++ +
Sbjct: 287 KLWNRNG-----QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT 341
Query: 140 KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC 199
H S++ + + P+ + S D V++++ G
Sbjct: 342 GH-----SSSVWGVAFSPDGQTIASASDDKTVKLWNRN-------------------GQL 377
Query: 200 LVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
L L SS + VAFS DG + S D ++ +
Sbjct: 378 LQTLTGHSSS---VRGVAFSPDGQTIASASDDKTVKL 411
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQ----LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNA 79
+AF+P+ Q + +K W++ L L GH V G+ ++P+ I + S+D+
Sbjct: 514 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTV 573
Query: 80 YVW 82
+W
Sbjct: 574 KLW 576
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 39 EKAANDWSQLDVLDGHDLKVTGIDWAPN----TNRIVTCSADRNAYVWTQNN-DDKKWKP 93
E+ W + L+ H V + WAP+ T+ I +CS D ++WT ++ W P
Sbjct: 196 EEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSP 255
Query: 94 TLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWV 138
L L + N V WS N A G +++ + ES + WV
Sbjct: 256 KL-LHKFNDVVWHVSWSITANILAVSGGDNKVTL-WKESVDGQWV 298
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 63/168 (37%), Gaps = 24/168 (14%)
Query: 51 LDGHDLKVTGIDWAPNT--NRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVK 108
L GH+ V + WA N + +CS DR +W + N W+ + + + V
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN--GTWEKSHEHAGHDSSVNSVC 110
Query: 109 WSPLENK--FAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS 166
W+P + A GS IS+ + E W V K N H +GC +
Sbjct: 111 WAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK---------------INNAHTIGCNA 155
Query: 167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC--LVELNNSSSGGGW 212
+ V + D S Q N+ + G C L++L G W
Sbjct: 156 VSWAPAVVPGSLIDHPSG-QKPNYIKRFASGGCDNLIKLWKEEEDGQW 202
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 69 RIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAAT-CVKWS-PL-ENKFAAGSGARLI 125
R+ TCS+DR+ ++ N + + LR + V W+ P+ N A+ S R
Sbjct: 27 RLATCSSDRSVKIFDVRNGG---QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR-- 81
Query: 126 SVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH--LLGCGSTDFKVRVFS 175
V + EN W H S++ + W P+++ +L CGS+D + + +
Sbjct: 82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT 133
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH +V G+ WAP+ + + D VW + W P + A V W
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 111 PLE-NKFAAGSGA-----RLISVC 128
P + N A G G R+ +VC
Sbjct: 206 PWQSNVLATGGGTSDRHIRIWNVC 229
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 68/167 (40%), Gaps = 14/167 (8%)
Query: 12 VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV 71
+++ AW LA ++ EV L+ ++ +L + H +V + W N +
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----KRLRNMTSHSARVGSLSW----NSYI 121
Query: 72 TCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATC-VKWSPLENKFAAGSGARLISVCYF 130
S R+ ++ ++D + + + L + C ++W+P A+G L++V
Sbjct: 122 LSSGSRSGHI--HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179
Query: 131 ESENDWWVAKHIKKPIKSTITCLDWHP---NNHLLGCGSTDFKVRVF 174
WV + + + W P N G G++D +R++
Sbjct: 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 226
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 73/198 (36%), Gaps = 44/198 (22%)
Query: 53 GHDLKVTGIDWAPNTNRIVTCSADRNAYVW--TQNNDDKKWKPTLVLLRINR-------A 103
GH V ++P+ + +CSAD +W T N+ K L +
Sbjct: 747 GHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVI 806
Query: 104 ATCVKWSPLENKFAAGSGARLI-----SVCYFESENDWWVAKHIKKPIKSTITCLDWHPN 158
C WS GAR++ + F+ + + I STI D+ P
Sbjct: 807 VKCCSWS--------ADGARIMVAAKNKIFLFDIHTSGLLGE-IHTGHHSTIQYCDFSPQ 857
Query: 159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAF 218
NHL + + V ++ N S+S + +C L+ W+H V F
Sbjct: 858 NHLAVVALSQYCVELW--------------NTDSRSKVADCRGHLS-------WVHGVMF 896
Query: 219 SKDGNKLCWTSHDGSINV 236
S DG+ +S D +I +
Sbjct: 897 SPDGSSFLTSSDDQTIRL 914
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA-PNTNRIV-TCSADRNA 79
+ +A ++Q + +++ +K ++W D HD + IDWA P RI+ + S D+
Sbjct: 22 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 81
Query: 80 YVWTQNNDD-----KKWKPTLVLLRINRAATCVKWSP 111
+W ++ D ++W L + VK++P
Sbjct: 82 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP 118
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA-PNTNRIV-TCSADRNA 79
+ +A ++Q + +++ +K ++W D HD + IDWA P RI+ + S D+
Sbjct: 24 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83
Query: 80 YVWTQNNDD-----KKWKPTLVLLRINRAATCVKWSP 111
+W ++ D ++W L + VK++P
Sbjct: 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP 120
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA-PNTNRIV-TCSADRNA 79
+ +A ++Q + +++ +K ++W D HD + IDWA P RI+ + S D+
Sbjct: 24 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83
Query: 80 YVWTQNNDD-----KKWKPTLVLLRINRAATCVKWSP 111
+W ++ D ++W L + VK++P
Sbjct: 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP 120
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH +V G+ WAP+ + + D VW + W P + A V W
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 111 PLE-NKFAAGSGA-----RLISVC 128
P + N A G G R+ +VC
Sbjct: 286 PWQSNVLATGGGTSDRHIRIWNVC 309
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 14/166 (8%)
Query: 12 VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV 71
+++ AW LA ++ EV L+ ++ +L + H +V + W N +
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----KRLRNMTSHSARVGSLSW----NSYI 201
Query: 72 TCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATC-VKWSPLENKFAAGSGARLISVCYF 130
S R+ ++ ++D + + + L + C ++W+P A+G L++V
Sbjct: 202 LSSGSRSGHI--HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259
Query: 131 ESENDWWVAKHIKKPIKSTITCLDWHP---NNHLLGCGSTDFKVRV 173
WV + + + W P N G G++D +R+
Sbjct: 260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 305
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH +V G+ WAP+ + + D VW + W P + A V W
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 111 PLE-NKFAAGSGA-----RLISVC 128
P + N A G G R+ +VC
Sbjct: 297 PWQSNVLATGGGTSDRHIRIWNVC 320
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 14/166 (8%)
Query: 12 VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV 71
+++ AW LA ++ EV L+ ++ +L + H +V + W N +
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----KRLRNMTSHSARVGSLSW----NSYI 212
Query: 72 TCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATC-VKWSPLENKFAAGSGARLISVCYF 130
S R+ ++ ++D + + + L + C ++W+P A+G L++V
Sbjct: 213 LSSGSRSGHI--HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 270
Query: 131 ESENDWWVAKHIKKPIKSTITCLDWHP---NNHLLGCGSTDFKVRV 173
WV + + + W P N G G++D +R+
Sbjct: 271 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 316
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 33/184 (17%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ + V WS
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISD--VAWS 96
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLGCGSTD 168
N + S + + + S K +K K + + C +++P ++L+ GS D
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228
VR+ W K+ G CL L S +H F++DG+ + +
Sbjct: 151 ESVRI----------------WDVKT--GKCLKTLPAHSDPVSAVH---FNRDGSLIVSS 189
Query: 229 SHDG 232
S+DG
Sbjct: 190 SYDG 193
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 51 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 110
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 111 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ + V WS
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISD--VAWS 91
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLGCGSTD 168
N + S + + + S K +K K + + C +++P ++L+ GS D
Sbjct: 92 SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 145
Query: 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228
VR+ W K+ G CL L S + +V F++DG+ + +
Sbjct: 146 ESVRI----------------WDVKT--GKCLKTLPAHSDP---VSAVHFNRDGSLIVSS 184
Query: 229 SHDG 232
S+DG
Sbjct: 185 SYDG 188
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 46 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 105
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 106 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 143
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ + V WS
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISD--VAWS 98
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLGCGSTD 168
N + S + + + S K +K K + + C +++P ++L+ GS D
Sbjct: 99 SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 152
Query: 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228
VR+ W K+ G CL L S + +V F++DG+ + +
Sbjct: 153 ESVRI----------------WDVKT--GKCLKTLPAHSDP---VSAVHFNRDGSLIVSS 191
Query: 229 SHDG 232
S+DG
Sbjct: 192 SYDG 195
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 53 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 112
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 113 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 85/191 (44%), Gaps = 33/191 (17%)
Query: 44 DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRA 103
+++ + L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGIS 72
Query: 104 ATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHL 161
V WS N + S + + + S K +K K + + C +++P ++L
Sbjct: 73 D--VAWSSDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD 221
+ GS D VR+ W K+ G CL L S + +V F++D
Sbjct: 125 IVSGSFDESVRI----------------WDVKT--GMCLKTLPAHSDP---VSAVHFNRD 163
Query: 222 GNKLCWTSHDG 232
G+ + +S+DG
Sbjct: 164 GSLIVSSSYDG 174
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 91
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 92 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 85/191 (44%), Gaps = 33/191 (17%)
Query: 44 DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRA 103
+++ + L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGIS 72
Query: 104 ATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHL 161
V WS N + S + + + S K +K K + + C +++P ++L
Sbjct: 73 D--VAWSSDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD 221
+ GS D VR+ W K+ G CL L S + +V F++D
Sbjct: 125 IVSGSFDESVRI----------------WDVKT--GMCLKTLPAHSDP---VSAVHFNRD 163
Query: 222 GNKLCWTSHDG 232
G+ + +S+DG
Sbjct: 164 GSLIVSSSYDG 174
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 91
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 92 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ + V WS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISD--VAWS 77
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLGCGSTD 168
N + S + + + S K +K K + + C +++P ++L+ GS D
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228
VR+ W K+ G CL L S + +V F++DG+ + +
Sbjct: 132 ESVRI----------------WDVKT--GKCLKTLPAHSDP---VSAVHFNRDGSLIVSS 170
Query: 229 SHDG 232
S+DG
Sbjct: 171 SYDG 174
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 91
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 92 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ + V WS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISD--VAWS 74
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLGCGSTD 168
N + S + + + S K +K K + + C +++P ++L+ GS D
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228
VR+ W K+ G CL L S + +V F++DG+ + +
Sbjct: 129 ESVRI----------------WDVKT--GKCLKTLPAHSDP---VSAVHFNRDGSLIVSS 167
Query: 229 SHDG 232
S+DG
Sbjct: 168 SYDG 171
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 88
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 89 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ + V WS
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISD--VAWS 75
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLGCGSTD 168
N + S + + + S K +K K + + C +++P ++L+ GS D
Sbjct: 76 SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 129
Query: 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228
VR+ W K+ G CL L S + +V F++DG+ + +
Sbjct: 130 ESVRI----------------WDVKT--GKCLKTLPAHSDP---VSAVHFNRDGSLIVSS 168
Query: 229 SHDG 232
S+DG
Sbjct: 169 SYDG 172
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 30 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 89
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 90 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 127
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ + V WS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISD--VAWS 74
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLGCGSTD 168
N + S + + + S K +K K + + C +++P ++L+ GS D
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228
VR+ W K+ G CL L S + +V F++DG+ + +
Sbjct: 129 ESVRI----------------WDVKT--GKCLKTLPAHSDP---VSAVHFNRDGSLIVSS 167
Query: 229 SHDG 232
S+DG
Sbjct: 168 SYDG 171
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 88
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 89 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ + V WS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISD--VAWS 77
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLGCGSTD 168
N + S + + + S K +K K + + C +++P ++L+ GS D
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228
VR+ W K+ G CL L S + +V F++DG+ + +
Sbjct: 132 ESVRI----------------WDVKT--GKCLKTLPAHSDP---VSAVHFNRDGSLIVSS 170
Query: 229 SHDG 232
S+DG
Sbjct: 171 SYDG 174
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 91
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 92 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 74/199 (37%), Gaps = 34/199 (17%)
Query: 53 GHDLKVTGIDWAPNTNRIVTCSADRNAYVW--TQNNDDKKWKPTLVLLR-------INRA 103
GH V ++P+ + +CSAD +W N+ K L +
Sbjct: 748 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 807
Query: 104 ATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163
C WS +K + + V F+ +A+ I STI D+ P +HL
Sbjct: 808 VKCCSWSADGDKIIVAAKNK---VLLFDIHTSGLLAE-IHTGHHSTIQYCDFSPYDHLAV 863
Query: 164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN 223
+ + V ++ N S+ + +C L+ W+H V FS DG+
Sbjct: 864 IALSQYCVELW--------------NIDSRLKVADCRGHLS-------WVHGVMFSPDGS 902
Query: 224 KLCWTSHDGSINVRMSQQV 242
S D +I V +++V
Sbjct: 903 SFLTASDDQTIRVWETKKV 921
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ + V WS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISD--VAWS 80
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLGCGSTD 168
N + S + + + S K +K K + + C +++P ++L+ GS D
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228
VR+ W K+ G CL L S + +V F++DG+ + +
Sbjct: 135 ESVRI----------------WDVKT--GKCLKTLPAHSDP---VSAVHFNRDGSLIVSS 173
Query: 229 SHDG 232
S+DG
Sbjct: 174 SYDG 177
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 35 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 94
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 95 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ + V WS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISD--VAWS 80
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLGCGSTD 168
N + S + + + S K +K K + + C +++P ++L+ GS D
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228
VR+ W K+ G CL L S + +V F++DG+ + +
Sbjct: 135 ESVRI----------------WDVKT--GKCLKTLPAHSDP---VSAVHFNRDGSLIVSS 173
Query: 229 SHDG 232
S+DG
Sbjct: 174 SYDG 177
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 35 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 94
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 95 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ + V WS
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISD--VAWS 79
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLGCGSTD 168
N + S + + + S K +K K + + C +++P ++L+ GS D
Sbjct: 80 SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 133
Query: 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228
VR+ W K+ G CL L S + +V F++DG+ + +
Sbjct: 134 ESVRI----------------WDVKT--GKCLKTLPAHSDP---VSAVHFNRDGSLIVSS 172
Query: 229 SHDG 232
S+DG
Sbjct: 173 SYDG 176
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 34 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 93
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 94 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 131
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ + V WS
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISD--VAWS 73
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLGCGSTD 168
N + S + + + S K +K K + + C +++P ++L+ GS D
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 127
Query: 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228
VR+ W K+ G CL L S + +V F++DG+ + +
Sbjct: 128 ESVRI----------------WDVKT--GKCLKTLPAHSDP---VSAVHFNRDGSLIVSS 166
Query: 229 SHDG 232
S+DG
Sbjct: 167 SYDG 170
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 22 QQLAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSAD 76
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D
Sbjct: 26 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 85
Query: 77 RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+ +W D K L + C ++P N +GS
Sbjct: 86 KTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 74/199 (37%), Gaps = 34/199 (17%)
Query: 53 GHDLKVTGIDWAPNTNRIVTCSADRNAYVW--TQNNDDKKWKPTLVLLR-------INRA 103
GH V ++P+ + +CSAD +W N+ K L +
Sbjct: 741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800
Query: 104 ATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163
C WS +K + + V F+ +A+ I STI D+ P +HL
Sbjct: 801 VKCCSWSADGDKIIVAAKNK---VLLFDIHTSGLLAE-IHTGHHSTIQYCDFSPYDHLAV 856
Query: 164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN 223
+ + V ++ N S+ + +C L+ W+H V FS DG+
Sbjct: 857 IALSQYCVELW--------------NIDSRLKVADCRGHLS-------WVHGVMFSPDGS 895
Query: 224 KLCWTSHDGSINVRMSQQV 242
S D +I V +++V
Sbjct: 896 SFLTASDDQTIRVWETKKV 914
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ + V WS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISD--VAWS 80
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLGCGSTD 168
N + S + + + S K +K K + + C +++P ++L+ GS D
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228
VR+ W K+ G CL L S + +V F++DG+ + +
Sbjct: 135 ESVRI----------------WDVKT--GKCLKTLPAHSDP---VSAVHFNRDGSLIVSS 173
Query: 229 SHDG 232
S+DG
Sbjct: 174 SYDG 177
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 35 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 94
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 95 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH V+ + ++PN + + SAD+ +W D K++ T+ ++ + V WS
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISD--VAWS 70
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLGCGSTD 168
N + S + + + S K +K K + + C +++P ++L+ GS D
Sbjct: 71 SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 124
Query: 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228
VR+ W K+ G CL L S + +V F++DG+ + +
Sbjct: 125 ESVRI----------------WDVKT--GKCLKTLPAHSDP---VSAVHFNRDGSLIVSS 163
Query: 229 SHDG 232
S+DG
Sbjct: 164 SYDG 167
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 25 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 84
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 85 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 33/184 (17%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS 110
L GH V+ + ++PN + SAD+ +W D K++ T+ ++ + V WS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY--DGKFEKTISGHKLGISD--VAWS 77
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHLLGCGSTD 168
N + S + + + S K +K K + + C +++P ++L+ GS D
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228
VR+ W K+ G CL L S + +V F++DG+ + +
Sbjct: 132 ESVRI----------------WDVKT--GKCLKTLPAHSDP---VSAVHFNRDGSLIVSS 170
Query: 229 SHDG 232
S+DG
Sbjct: 171 SYDG 174
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLD-----VLDGHDLKVTGIDWAPNTNRIVTCSADRN 78
+ F+PN + + +K W D + GH L ++ + W+ ++N +V+ S D+
Sbjct: 32 VKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 91
Query: 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+W D K L + C ++P N +GS
Sbjct: 92 LKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 19/157 (12%)
Query: 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI 70
PV +N Q+ TP + + E+ + +D D + +DW+ N N +
Sbjct: 55 PVDLRTQHNRPQRPVVTPAKRRFNTTP-ERVLDAPGIID-----DYYLNLLDWS-NLN-V 106
Query: 71 VTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYF 130
V + +RN YVW N D L + VKWS + + G G L+ +
Sbjct: 107 VAVALERNVYVW---NADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163
Query: 131 ESENDWW-VAKHIKKPIKSTITCLDWHPNNHLLGCGS 166
ES+ +A H ++ + CL W N H+L GS
Sbjct: 164 ESQTKLRTMAGH-----QARVGCLSW--NRHVLSSGS 193
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 47 QLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATC 106
Q+ L GH +V G+ W + ++ + D +W D + P N A
Sbjct: 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW----DARSSIPKFTKTNHNAAVKA 264
Query: 107 VKWSPLENKFAAGSGARLISVCYF 130
V W P ++ A G + +F
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHF 288
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 31 QEVHLYQYEKAANDWSQL-----DVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN 85
+V L+Q + Q L GH KV +DW + RIV+ S D VW
Sbjct: 35 HDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSF 94
Query: 86 NDDKKWKPTL 95
+K+ T+
Sbjct: 95 TTNKEHAVTM 104
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
Length = 380
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW 82
L GH KV +DW P N IV+ S D VW
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVW 93
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 48 LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRI 100
L +GH+ V I PN + IV+C DR +W++ N K TL + I
Sbjct: 218 LRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISI 269
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 12 VTTHAWNNTRQQLAFTPNNQEVHLYQ----YEKA-ANDWSQLDVLDGHDLKVTGIDWAPN 66
+T+ A++N L T +++V Y +E A N W+ H KV + W+P+
Sbjct: 494 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF------HTAKVACVSWSPD 547
Query: 67 TNRIVTCSADRNAYVWTQN 85
R+ T S D + VW N
Sbjct: 548 NVRLATGSLDNSVIVWNMN 566
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 16 AWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA 75
A +N +Q +A + +VH+Y+ A+ + V H ++T + ++ N +V
Sbjct: 455 ALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV---HPAEITSVAFSNNGAFLVATDQ 511
Query: 76 DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
R ++ N+ + + A CV WSP + A GS
Sbjct: 512 SRKVIPYSVANNFELAHTNSWTFHTAKVA-CVSWSPDNVRLATGS 555
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 54 HDLKVTGIDWAPNTNRIVTCSADRNAYVW 82
H V G+ W+P+ +I + SAD+ +W
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIW 266
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP 157
PL + F +G R++ + + + +H+K I++ CLDW P
Sbjct: 287 PLRHHFPPFAGFRVVESSSYYGKG-YQDVEHMKPSIRNAHRCLDWEP 332
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 48 LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW 82
+ + GHD V+ + PN + IV+ S D+ +W
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
>pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type
Myosin-Binding Protein C
Length = 110
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 95 LVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVA-KHIKKPIKSTITCL 153
L + + ++W P ++ AAG ++ C FE DW VA K + K TIT L
Sbjct: 14 LTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYC-FEGTEDWIVANKDLIDKTKFTITGL 72
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 111 PLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP 157
PL + F +G R++ + + + +H K I++ CLDW P
Sbjct: 287 PLRHHFPPFAGFRVVESSSYYGKG-YQDVEHYKPSIRNAHRCLDWEP 332
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 6/127 (4%)
Query: 54 HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE 113
H V + AP+T V+ + D +A +W + + T + A C + P
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVR--EGMCRQTFTGHESDINAIC--FFPNG 238
Query: 114 NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRV 173
N FA GS + F+ D + + I IT + + + LL G DF V
Sbjct: 239 NAFATGSDDATCRL--FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 174 FSAYIKD 180
+ A D
Sbjct: 297 WDALKAD 303
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 54 HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE 113
H V + AP+T V+ + D +A +W + + + T + A C + P
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLW--DVREGMCRQTFTGHESDINAIC--FFPNG 238
Query: 114 NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRV 173
N FA GS + F+ D + + I IT + + + LL G DF V
Sbjct: 239 NAFATGSDDATCRL--FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 174 FSAYIKD 180
+ A D
Sbjct: 297 WDALKAD 303
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 54 HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE 113
H V + AP+T V+ + D +A +W + + + T + A C + P
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLW--DVREGMCRQTFTGHESDINAIC--FFPNG 238
Query: 114 NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRV 173
N FA GS + F+ D + + I IT + + + LL G DF V
Sbjct: 239 NAFATGSDDATCRL--FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 174 FSAYIKD 180
+ A D
Sbjct: 297 WDALKAD 303
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 54 HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE 113
H V + AP+T V+ + D +A +W + + + T + A C + P
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLW--DVREGMCRQTFTGHESDINAIC--FFPNG 249
Query: 114 NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRV 173
N FA GS + F+ D + + I IT + + + LL G DF V
Sbjct: 250 NAFATGSDDATCRL--FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 307
Query: 174 FSAYIKD 180
+ A D
Sbjct: 308 WDALKAD 314
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 54 HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE 113
H V + AP+T V+ + D +A +W + + + T + A C + P
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLW--DVREGMCRQTFTGHESDINAIC--FFPNG 238
Query: 114 NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRV 173
N FA GS + F+ D + + I IT + + + LL G DF V
Sbjct: 239 NAFATGSDDATCRL--FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 174 FSAYIKD 180
+ A D
Sbjct: 297 WDALKAD 303
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 47 QLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD--KKWKPTLVLLRINRAA 104
+L LDGH + ID T VT SAD + +W +N WK + + R
Sbjct: 66 RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKR----- 120
Query: 105 TCVKWSPLENKFAA 118
V++SP N F A
Sbjct: 121 --VEFSPCGNYFLA 132
>pdb|1WC2|A Chain A, Beta-1,4-D-Endoglucanase Cel45a From Blue Mussel Mytilus
Edulis At 1.2a
Length = 181
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 118 AGSGARLISVCYFESENDWWVAKHIKKPIKSTIT 151
AGS S YF+S N W +H + IK T T
Sbjct: 45 AGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTT 78
>pdb|1WCS|A Chain A, A Mutant Of Trypanosoma Rangeli Sialidase Displaying
Trans- Sialidase Activity
Length = 641
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 70 IVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAA 104
I+ S ++ WTQ+ D W+P LV+ + ++A
Sbjct: 112 ILVGSFNKTRNYWTQHRDGSDWEPLLVVGEVTKSA 146
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 52 DGHDLKVTGIDWAPNTNRIVTCSAD 76
+GH L+ T + P TN+++ CS D
Sbjct: 276 EGHXLRSTHPQFIPGTNQLIICSND 300
>pdb|2A75|A Chain A, Trypanosoma Rangeli Sialidase In Complex With 2,3-
Difluorosialic Acid (Covalent Intermediate)
pdb|2AGS|A Chain A, Trypanosoma Rangeli Sialidase In Complex With 2-Keto-3-
Deoxy-D-Glycero-D-Galacto-2,3-Difluoro-Nononic Acid
(2,3- Difluoro-Kdn)
pdb|2FHR|A Chain A, Trypanosoma Rangeli Sialidase In Complex With 2,3-
Difluorosialic Acid (Covalent Intermediate)
Length = 652
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 70 IVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAA 104
I+ S ++ WTQ+ D W+P LV+ + ++A
Sbjct: 123 ILVGSFNKTRNSWTQHRDGSDWEPLLVVGEVTKSA 157
>pdb|1MZ5|A Chain A, Trypanosoma Rangeli Sialidase
pdb|1MZ6|A Chain A, Trypanosoma Rangeli Sialidase In Complex With The
Inhibitor Dana
Length = 638
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 70 IVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAA 104
I+ S ++ WTQ+ D W+P LV+ + ++A
Sbjct: 109 ILVGSFNKTRNSWTQHRDGSDWEPLLVVGEVTKSA 143
>pdb|1N1S|A Chain A, Trypanosoma Rangeli Sialidase
pdb|1N1T|A Chain A, Trypanosoma Rangeli Sialidase In Complex With Dana At 1.6
A
pdb|1N1V|A Chain A, Trypanosoma Rangeli Sialidase In Complex With Dana
pdb|1N1Y|A Chain A, Trypanosoma Rangeli Sialidase In Complex With Sialic Acid
Length = 641
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 70 IVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAA 104
I+ S ++ WTQ+ D W+P LV+ + ++A
Sbjct: 112 ILVGSFNKTRNSWTQHRDGSDWEPLLVVGEVTKSA 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,172,401
Number of Sequences: 62578
Number of extensions: 345840
Number of successful extensions: 1042
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 168
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)