Query psy11529
Match_columns 244
No_of_seqs 488 out of 1211
Neff 11.9
Searched_HMMs 29240
Date Fri Aug 16 20:45:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 3.8E-42 1.3E-46 256.3 31.4 226 3-242 7-260 (304)
2 2pm7_B Protein transport prote 100.0 6.9E-42 2.3E-46 254.1 29.7 218 1-241 1-238 (297)
3 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.7E-41 1.2E-45 255.2 31.4 209 7-239 13-223 (345)
4 4gqb_B Methylosome protein 50; 100.0 1.9E-41 6.6E-46 256.1 28.2 204 7-242 125-332 (344)
5 3dwl_C Actin-related protein 2 100.0 3E-42 1E-46 263.9 21.8 232 3-242 5-237 (377)
6 1k8k_C P40, ARP2/3 complex 41 100.0 2.7E-40 9.1E-45 252.5 31.3 234 2-242 1-234 (372)
7 3ow8_A WD repeat-containing pr 100.0 1.6E-40 5.4E-45 249.2 29.1 201 7-240 120-320 (321)
8 4gqb_B Methylosome protein 50; 100.0 2.7E-40 9.1E-45 249.9 29.7 207 8-242 81-290 (344)
9 3ow8_A WD repeat-containing pr 100.0 3.4E-40 1.1E-44 247.4 29.1 204 6-242 77-280 (321)
10 2hes_X YDR267CP; beta-propelle 100.0 1.6E-39 5.3E-44 244.8 31.4 212 5-241 10-230 (330)
11 1got_B GT-beta; complex (GTP-b 100.0 6.4E-40 2.2E-44 247.9 29.3 205 6-242 52-258 (340)
12 1vyh_C Platelet-activating fac 100.0 8.3E-40 2.8E-44 253.1 29.9 205 5-242 146-370 (410)
13 1vyh_C Platelet-activating fac 100.0 5.8E-40 2E-44 254.0 28.8 205 5-242 104-328 (410)
14 3bg1_A Protein SEC13 homolog; 100.0 1.6E-40 5.4E-45 248.8 24.7 214 5-241 9-247 (316)
15 4g56_B MGC81050 protein; prote 100.0 3.1E-40 1E-44 251.1 26.5 202 8-241 138-343 (357)
16 4h5i_A Guanine nucleotide-exch 100.0 6E-40 2.1E-44 250.1 27.9 204 9-241 133-343 (365)
17 3fm0_A Protein CIAO1; WDR39,SG 100.0 4E-39 1.4E-43 244.0 32.0 224 7-241 59-283 (345)
18 1got_B GT-beta; complex (GTP-b 100.0 1.8E-39 6.2E-44 245.4 29.3 201 6-238 140-340 (340)
19 4ery_A WD repeat-containing pr 100.0 6.7E-39 2.3E-43 239.6 31.3 205 6-242 20-224 (312)
20 2pbi_B Guanine nucleotide-bind 100.0 4.7E-39 1.6E-43 244.3 30.5 202 6-238 151-354 (354)
21 3frx_A Guanine nucleotide-bind 100.0 7.2E-39 2.5E-43 240.1 31.1 208 5-242 13-228 (319)
22 2pm7_B Protein transport prote 100.0 1.3E-38 4.3E-43 236.5 31.8 214 5-240 49-284 (297)
23 3f3f_A Nucleoporin SEH1; struc 100.0 6.7E-39 2.3E-43 242.2 30.4 236 2-242 4-338 (351)
24 3frx_A Guanine nucleotide-bind 100.0 1.1E-38 3.7E-43 239.1 29.5 224 5-241 61-317 (319)
25 2pbi_B Guanine nucleotide-bind 100.0 1.6E-38 5.6E-43 241.4 30.7 206 5-241 60-271 (354)
26 2xzm_R RACK1; ribosome, transl 100.0 2.6E-38 8.9E-43 239.4 31.6 209 5-241 17-244 (343)
27 2hes_X YDR267CP; beta-propelle 100.0 1.8E-38 6.3E-43 239.0 29.7 216 8-241 57-280 (330)
28 3jrp_A Fusion protein of prote 100.0 2E-38 6.8E-43 242.5 29.6 218 2-242 4-241 (379)
29 4e54_B DNA damage-binding prot 100.0 2.8E-39 9.7E-44 252.0 22.6 210 6-242 116-328 (435)
30 1erj_A Transcriptional repress 100.0 1.2E-37 4.3E-42 239.7 29.9 214 11-242 125-342 (393)
31 2ymu_A WD-40 repeat protein; u 100.0 7.8E-38 2.7E-42 251.8 29.5 196 6-238 382-577 (577)
32 1nr0_A Actin interacting prote 100.0 5.4E-38 1.8E-42 254.2 28.2 206 4-242 54-271 (611)
33 3iz6_a 40S ribosomal protein R 100.0 6.3E-39 2.2E-43 245.9 21.4 211 5-241 62-280 (380)
34 4g56_B MGC81050 protein; prote 100.0 8.7E-38 3E-42 237.6 25.9 208 7-242 92-302 (357)
35 1erj_A Transcriptional repress 100.0 3.2E-37 1.1E-41 237.5 29.2 211 6-244 162-392 (393)
36 4ery_A WD repeat-containing pr 100.0 2E-36 6.9E-41 226.1 31.9 222 5-240 61-311 (312)
37 3bg1_A Protein SEC13 homolog; 100.0 1.4E-37 4.9E-42 232.8 23.0 213 6-240 54-292 (316)
38 3jrp_A Fusion protein of prote 100.0 4.3E-36 1.5E-40 229.6 31.2 215 6-240 52-286 (379)
39 3iz6_a 40S ribosomal protein R 100.0 3.1E-37 1.1E-41 236.5 24.6 209 6-242 154-376 (380)
40 2xzm_R RACK1; ribosome, transl 100.0 1.8E-36 6.2E-41 229.3 28.4 204 6-242 73-286 (343)
41 3dm0_A Maltose-binding peripla 100.0 1.4E-36 4.8E-41 249.4 29.3 213 4-242 377-593 (694)
42 3ei3_B DNA damage-binding prot 100.0 2.4E-36 8.1E-41 231.8 27.8 210 6-242 70-283 (383)
43 1nr0_A Actin interacting prote 100.0 2.5E-36 8.6E-41 244.5 29.0 220 6-241 100-355 (611)
44 2ynn_A Coatomer subunit beta'; 100.0 7.9E-36 2.7E-40 222.2 28.9 205 5-241 93-302 (304)
45 3jro_A Fusion protein of prote 100.0 1.3E-36 4.3E-41 251.3 27.0 219 1-242 1-239 (753)
46 3zwl_B Eukaryotic translation 100.0 1.5E-35 5E-40 225.7 30.9 208 5-242 28-250 (369)
47 2ymu_A WD-40 repeat protein; u 100.0 1E-35 3.4E-40 239.5 30.5 197 7-240 342-538 (577)
48 3dwl_C Actin-related protein 2 100.0 1.7E-36 5.9E-41 232.0 24.1 207 7-240 53-280 (377)
49 4aow_A Guanine nucleotide-bind 100.0 2.5E-35 8.7E-40 222.3 29.2 209 6-242 35-247 (340)
50 1k8k_C P40, ARP2/3 complex 41 100.0 2.6E-35 8.7E-40 224.9 29.5 210 6-241 49-274 (372)
51 1gxr_A ESG1, transducin-like e 100.0 5.7E-35 2E-39 220.0 28.6 206 7-242 49-256 (337)
52 4e54_B DNA damage-binding prot 100.0 1.8E-36 6.2E-41 236.2 21.0 225 8-243 163-432 (435)
53 2j04_B YDR362CP, TAU91; beta p 100.0 3.6E-36 1.2E-40 238.0 22.6 206 7-241 205-428 (524)
54 1gxr_A ESG1, transducin-like e 100.0 1.6E-34 5.3E-39 217.6 30.5 198 7-240 139-336 (337)
55 3dw8_B Serine/threonine-protei 100.0 1.2E-35 4.1E-40 232.0 25.3 210 9-241 28-315 (447)
56 3vl1_A 26S proteasome regulato 100.0 5.7E-36 1.9E-40 232.2 22.7 205 7-241 137-365 (420)
57 3vl1_A 26S proteasome regulato 100.0 4E-35 1.4E-39 227.4 26.1 204 10-242 98-323 (420)
58 2aq5_A Coronin-1A; WD40 repeat 100.0 6.1E-35 2.1E-39 225.4 26.9 209 6-243 78-301 (402)
59 3dm0_A Maltose-binding peripla 100.0 8.1E-35 2.8E-39 239.0 29.0 204 5-242 426-633 (694)
60 3mmy_A MRNA export factor; mRN 100.0 4.3E-35 1.5E-39 223.1 25.3 207 5-239 35-344 (368)
61 4gga_A P55CDC, cell division c 100.0 1.1E-34 3.9E-39 225.1 28.0 225 8-244 146-398 (420)
62 4ggc_A P55CDC, cell division c 100.0 3.2E-34 1.1E-38 214.4 28.2 209 8-244 66-318 (318)
63 3jro_A Fusion protein of prote 100.0 8.6E-35 2.9E-39 240.4 27.1 216 6-241 50-285 (753)
64 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-35 4.6E-40 234.8 21.0 220 7-241 264-517 (524)
65 2oaj_A Protein SNI1; WD40 repe 100.0 1.4E-34 4.9E-39 242.5 28.1 205 7-241 15-242 (902)
66 3mkq_A Coatomer beta'-subunit; 100.0 1.9E-34 6.4E-39 240.5 28.8 209 3-242 7-218 (814)
67 1r5m_A SIR4-interacting protei 100.0 3.4E-34 1.2E-38 222.1 28.1 201 8-241 107-361 (425)
68 1sq9_A Antiviral protein SKI8; 100.0 8.2E-35 2.8E-39 224.1 23.6 205 6-242 59-323 (397)
69 3ei3_B DNA damage-binding prot 100.0 2.6E-34 8.8E-39 220.5 25.5 204 9-241 163-382 (383)
70 3k26_A Polycomb protein EED; W 100.0 1.2E-34 4E-39 220.6 23.4 214 5-241 111-366 (366)
71 3i2n_A WD repeat-containing pr 100.0 3.5E-34 1.2E-38 217.4 25.5 227 5-242 107-354 (357)
72 2pm9_A Protein WEB1, protein t 100.0 7.8E-35 2.7E-39 225.4 21.9 208 7-242 111-338 (416)
73 2xyi_A Probable histone-bindin 100.0 7.2E-34 2.5E-38 221.2 27.3 225 5-241 177-410 (430)
74 3k26_A Polycomb protein EED; W 100.0 7.2E-35 2.5E-39 221.8 21.0 220 8-242 68-319 (366)
75 2pm9_A Protein WEB1, protein t 100.0 1.3E-34 4.6E-39 224.1 22.5 208 8-242 66-295 (416)
76 4a11_B DNA excision repair pro 100.0 2.3E-33 7.8E-38 216.4 29.0 223 4-242 38-277 (408)
77 3zwl_B Eukaryotic translation 100.0 1.9E-33 6.4E-38 214.1 28.0 223 6-241 71-346 (369)
78 3gre_A Serine/threonine-protei 100.0 2.8E-34 9.5E-39 223.9 23.7 210 7-242 61-293 (437)
79 1r5m_A SIR4-interacting protei 100.0 1.6E-33 5.5E-38 218.3 27.0 221 6-240 146-424 (425)
80 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.8E-33 6.3E-38 220.1 27.3 203 9-239 102-337 (450)
81 4a11_B DNA excision repair pro 100.0 1.1E-32 3.7E-37 212.7 30.9 224 8-243 98-367 (408)
82 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-33 5.2E-38 235.1 28.0 207 5-242 51-260 (814)
83 4aow_A Guanine nucleotide-bind 100.0 5.2E-33 1.8E-37 209.7 28.3 222 6-241 83-337 (340)
84 2w18_A PALB2, fancn, partner a 100.0 4.1E-34 1.4E-38 210.4 21.2 203 8-240 110-356 (356)
85 2xyi_A Probable histone-bindin 100.0 1.2E-33 3.9E-38 220.1 25.0 212 7-241 126-353 (430)
86 3i2n_A WD repeat-containing pr 100.0 5.9E-34 2E-38 216.2 22.5 208 7-241 63-291 (357)
87 1yfq_A Cell cycle arrest prote 100.0 1.1E-33 3.6E-38 213.7 23.7 209 7-242 54-283 (342)
88 3dw8_B Serine/threonine-protei 100.0 4E-34 1.4E-38 223.4 22.1 207 10-242 94-374 (447)
89 2aq5_A Coronin-1A; WD40 repeat 100.0 1.3E-33 4.6E-38 217.9 24.0 204 12-242 37-255 (402)
90 1sq9_A Antiviral protein SKI8; 100.0 3.6E-33 1.2E-37 214.9 26.4 206 9-241 121-395 (397)
91 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.3E-33 7.9E-38 219.6 25.6 206 10-242 5-272 (450)
92 4aez_A CDC20, WD repeat-contai 100.0 7.3E-33 2.5E-37 213.7 27.9 199 8-241 133-336 (401)
93 4aez_A CDC20, WD repeat-contai 100.0 1E-32 3.4E-37 213.0 27.5 203 7-242 174-381 (401)
94 2j04_A TAU60, YPL007P, hypothe 100.0 3.1E-33 1.1E-37 218.0 24.7 196 9-240 85-296 (588)
95 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-32 4.3E-37 238.6 30.6 222 6-242 612-872 (1249)
96 1yfq_A Cell cycle arrest prote 100.0 3.8E-33 1.3E-37 210.7 23.3 205 4-242 6-226 (342)
97 1pgu_A Actin interacting prote 100.0 5.7E-33 2E-37 224.8 25.5 205 8-242 17-239 (615)
98 3odt_A Protein DOA1; ubiquitin 100.0 2.9E-32 9.9E-37 203.3 27.2 199 5-242 14-215 (313)
99 3v7d_B Cell division control p 100.0 2.1E-32 7.1E-37 214.9 27.6 201 6-242 159-382 (464)
100 3gre_A Serine/threonine-protei 100.0 3.4E-33 1.2E-37 217.8 22.8 225 7-242 109-360 (437)
101 4h5i_A Guanine nucleotide-exch 100.0 2E-32 6.7E-37 208.7 26.4 162 56-242 134-301 (365)
102 3v7d_B Cell division control p 100.0 5.9E-32 2E-36 212.3 28.5 203 6-242 118-342 (464)
103 1pgu_A Actin interacting prote 100.0 4.5E-32 1.5E-36 219.5 28.3 203 6-242 60-284 (615)
104 3vu4_A KMHSV2; beta-propeller 100.0 5.1E-32 1.7E-36 205.7 26.5 203 6-241 16-271 (355)
105 2j04_A TAU60, YPL007P, hypothe 100.0 1.5E-32 5.1E-37 214.2 22.4 198 9-242 15-255 (588)
106 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-32 4E-37 208.4 21.2 201 10-241 77-292 (343)
107 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-32 4E-37 208.4 20.8 192 16-242 43-245 (343)
108 3sfz_A APAF-1, apoptotic pepti 100.0 1E-31 3.5E-36 232.9 29.2 206 7-241 655-913 (1249)
109 3odt_A Protein DOA1; ubiquitin 100.0 1E-31 3.4E-36 200.4 25.3 195 6-242 101-297 (313)
110 4gq1_A NUP37; propeller, trans 100.0 1.6E-32 5.4E-37 211.2 20.9 202 7-240 134-388 (393)
111 1p22_A F-BOX/WD-repeat protein 100.0 5.5E-30 1.9E-34 199.6 29.1 194 8-241 132-325 (435)
112 1p22_A F-BOX/WD-repeat protein 100.0 2.3E-30 7.8E-35 201.8 26.8 195 6-241 170-365 (435)
113 4ggc_A P55CDC, cell division c 100.0 7.5E-30 2.6E-34 190.7 27.1 204 12-243 28-275 (318)
114 4gga_A P55CDC, cell division c 100.0 8.3E-30 2.8E-34 197.8 26.9 202 11-242 107-311 (420)
115 4gq1_A NUP37; propeller, trans 100.0 1.4E-31 4.9E-36 205.9 16.5 216 17-242 97-349 (393)
116 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-30 3.8E-35 219.1 23.0 205 9-239 342-659 (902)
117 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.7E-29 5.6E-34 197.5 27.9 196 4-242 113-309 (445)
118 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-29 1.3E-33 188.7 25.1 190 48-242 4-250 (351)
119 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.4E-28 4.6E-33 192.3 28.7 195 6-241 236-442 (445)
120 3vu4_A KMHSV2; beta-propeller 100.0 2.7E-28 9.2E-33 185.3 26.5 220 10-241 59-336 (355)
121 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.2E-27 1.1E-31 182.9 28.7 197 7-241 176-387 (415)
122 1l0q_A Surface layer protein; 100.0 3.6E-27 1.2E-31 181.2 28.0 197 9-242 31-234 (391)
123 3mmy_A MRNA export factor; mRN 100.0 3E-28 1E-32 185.3 21.7 127 46-179 30-161 (368)
124 1l0q_A Surface layer protein; 100.0 6.4E-27 2.2E-31 179.8 28.6 197 9-242 73-276 (391)
125 3bws_A Protein LP49; two-domai 100.0 3E-27 1E-31 184.0 25.8 199 8-242 168-391 (433)
126 3bws_A Protein LP49; two-domai 100.0 1E-26 3.5E-31 180.9 28.4 199 7-242 209-433 (433)
127 2w18_A PALB2, fancn, partner a 100.0 2.6E-27 8.9E-32 174.4 18.6 158 7-176 176-355 (356)
128 2oit_A Nucleoporin 214KDA; NH2 100.0 6.6E-27 2.2E-31 181.8 20.8 207 9-242 36-279 (434)
129 2ojh_A Uncharacterized protein 99.9 4.3E-25 1.5E-29 162.9 26.0 204 8-242 40-259 (297)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.7E-25 1.6E-29 170.7 25.2 185 21-242 143-345 (415)
131 1ri6_A Putative isomerase YBHE 99.9 3E-24 1E-28 161.8 27.0 216 8-240 36-261 (343)
132 3hfq_A Uncharacterized protein 99.9 7E-23 2.4E-27 155.0 30.5 212 8-240 84-316 (347)
133 3u4y_A Uncharacterized protein 99.9 2.8E-23 9.7E-28 156.0 26.5 203 7-241 38-252 (331)
134 1ri6_A Putative isomerase YBHE 99.9 6.5E-23 2.2E-27 154.5 26.4 209 10-240 84-307 (343)
135 3hfq_A Uncharacterized protein 99.9 8.2E-23 2.8E-27 154.6 26.8 212 9-240 39-270 (347)
136 2ecf_A Dipeptidyl peptidase IV 99.9 2.7E-24 9.1E-29 177.9 19.7 197 9-242 36-322 (741)
137 2oit_A Nucleoporin 214KDA; NH2 99.9 1E-23 3.6E-28 163.8 21.5 166 9-179 92-279 (434)
138 1xfd_A DIP, dipeptidyl aminope 99.9 1.1E-24 3.9E-29 179.6 15.8 202 10-241 17-289 (723)
139 2ojh_A Uncharacterized protein 99.9 3.4E-23 1.2E-27 152.7 20.6 192 10-232 85-293 (297)
140 2ecf_A Dipeptidyl peptidase IV 99.9 1.5E-23 5.1E-28 173.4 17.4 199 11-240 110-366 (741)
141 1nir_A Nitrite reductase; hemo 99.9 8.8E-22 3E-26 156.9 26.2 202 11-241 180-402 (543)
142 3vgz_A Uncharacterized protein 99.9 9.4E-22 3.2E-26 148.8 25.0 202 10-242 89-304 (353)
143 3vgz_A Uncharacterized protein 99.9 8.3E-22 2.8E-26 149.2 24.4 205 9-242 40-263 (353)
144 1nir_A Nitrite reductase; hemo 99.9 5.5E-22 1.9E-26 158.1 24.1 195 16-242 144-356 (543)
145 3scy_A Hypothetical bacterial 99.9 9.3E-21 3.2E-25 144.1 29.7 213 8-240 48-290 (361)
146 1pby_B Quinohemoprotein amine 99.9 5.1E-22 1.7E-26 149.3 22.4 197 11-242 35-311 (337)
147 1k32_A Tricorn protease; prote 99.9 1E-22 3.5E-27 174.0 20.8 193 10-240 296-501 (1045)
148 3u4y_A Uncharacterized protein 99.9 3E-21 1E-25 145.0 26.1 208 8-241 82-304 (331)
149 1jmx_B Amine dehydrogenase; ox 99.9 4.8E-22 1.7E-26 150.2 21.5 199 11-242 44-326 (349)
150 1xfd_A DIP, dipeptidyl aminope 99.9 2E-22 6.9E-27 166.3 19.8 197 11-238 62-341 (723)
151 3o4h_A Acylamino-acid-releasin 99.9 7.5E-22 2.6E-26 159.2 21.1 195 9-242 21-228 (582)
152 2z3z_A Dipeptidyl aminopeptida 99.9 6.7E-22 2.3E-26 162.8 21.3 210 9-241 120-391 (706)
153 2z3z_A Dipeptidyl aminopeptida 99.9 3E-21 1E-25 158.9 24.6 200 12-241 183-435 (706)
154 1k32_A Tricorn protease; prote 99.9 2.9E-22 9.8E-27 171.3 19.0 192 11-241 246-461 (1045)
155 1z68_A Fibroblast activation p 99.9 1.4E-22 4.9E-27 167.1 14.8 190 14-238 20-284 (719)
156 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.6E-20 8.9E-25 141.9 24.9 205 12-241 85-341 (365)
157 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.6E-20 8.8E-25 141.9 24.8 208 10-240 40-290 (365)
158 3scy_A Hypothetical bacterial 99.9 4.2E-19 1.4E-23 135.0 30.6 211 9-240 99-336 (361)
159 1jmx_B Amine dehydrogenase; ox 99.9 1.1E-20 3.8E-25 142.7 18.5 156 14-180 4-177 (349)
160 1pby_B Quinohemoprotein amine 99.9 6.9E-20 2.4E-24 137.6 20.9 203 22-242 2-270 (337)
161 4a5s_A Dipeptidyl peptidase 4 99.9 1.4E-20 4.9E-25 155.6 17.5 213 11-241 18-294 (740)
162 1z68_A Fibroblast activation p 99.9 3.3E-21 1.1E-25 159.0 12.7 199 11-241 61-346 (719)
163 1q7f_A NHL, brain tumor CG1071 99.9 2.1E-18 7.2E-23 127.0 26.0 202 10-244 77-283 (286)
164 3o4h_A Acylamino-acid-releasin 99.9 1.9E-20 6.6E-25 151.0 16.4 190 10-239 65-274 (582)
165 3pe7_A Oligogalacturonate lyas 99.8 3.4E-19 1.2E-23 136.6 19.0 195 15-242 41-274 (388)
166 4a5s_A Dipeptidyl peptidase 4 99.8 2.6E-19 9E-24 148.1 18.5 204 13-241 65-353 (740)
167 3azo_A Aminopeptidase; POP fam 99.8 1.5E-18 5.2E-23 141.9 20.5 197 14-238 81-320 (662)
168 3azo_A Aminopeptidase; POP fam 99.8 3.2E-18 1.1E-22 140.0 22.2 199 8-240 22-273 (662)
169 3fvz_A Peptidyl-glycine alpha- 99.8 1.1E-17 3.6E-22 125.7 23.2 203 10-241 91-322 (329)
170 1q7f_A NHL, brain tumor CG1071 99.8 8.2E-17 2.8E-21 118.4 25.4 198 10-240 30-237 (286)
171 3e5z_A Putative gluconolactona 99.8 7.7E-17 2.6E-21 119.2 23.9 199 8-240 26-245 (296)
172 3fvz_A Peptidyl-glycine alpha- 99.8 1E-16 3.6E-21 120.3 24.1 206 9-241 23-277 (329)
173 2dg1_A DRP35, lactonase; beta 99.8 9.1E-16 3.1E-20 115.2 26.6 202 9-240 44-262 (333)
174 3pe7_A Oligogalacturonate lyas 99.8 6.9E-18 2.4E-22 129.3 15.1 199 12-241 83-329 (388)
175 2oiz_A Aromatic amine dehydrog 99.8 3.6E-16 1.2E-20 118.8 24.1 196 14-242 54-335 (361)
176 3e5z_A Putative gluconolactona 99.8 1E-15 3.5E-20 113.1 25.8 199 8-241 67-286 (296)
177 2xdw_A Prolyl endopeptidase; a 99.8 2E-16 6.9E-21 130.4 22.5 199 11-239 126-366 (710)
178 2gop_A Trilobed protease; beta 99.8 1.5E-16 5.2E-21 120.1 19.7 184 10-240 59-290 (347)
179 3c5m_A Oligogalacturonate lyas 99.8 4.3E-17 1.5E-21 125.1 16.2 190 15-241 86-329 (396)
180 1rwi_B Serine/threonine-protei 99.8 5.4E-16 1.9E-20 113.0 21.2 197 10-242 67-265 (270)
181 3no2_A Uncharacterized protein 99.8 9.4E-16 3.2E-20 112.1 22.3 188 20-241 4-195 (276)
182 3c5m_A Oligogalacturonate lyas 99.8 5.8E-18 2E-22 130.0 11.0 197 12-242 38-274 (396)
183 1xip_A Nucleoporin NUP159; bet 99.7 7.5E-16 2.6E-20 116.7 19.5 176 9-227 37-230 (388)
184 2dg1_A DRP35, lactonase; beta 99.7 6.4E-14 2.2E-18 105.2 29.8 195 8-231 85-300 (333)
185 2bkl_A Prolyl endopeptidase; m 99.7 5.3E-16 1.8E-20 127.6 19.9 199 11-240 122-348 (695)
186 1rwi_B Serine/threonine-protei 99.7 7E-15 2.4E-19 107.1 22.9 197 11-242 25-223 (270)
187 2xdw_A Prolyl endopeptidase; a 99.7 5.2E-15 1.8E-19 122.0 23.0 202 12-241 173-414 (710)
188 2gop_A Trilobed protease; beta 99.7 1.3E-14 4.5E-19 109.4 22.3 180 12-239 106-329 (347)
189 1yr2_A Prolyl oligopeptidase; 99.7 2E-14 6.7E-19 119.1 22.4 196 11-239 164-391 (741)
190 2bkl_A Prolyl endopeptidase; m 99.7 8.2E-15 2.8E-19 120.6 20.0 201 13-241 171-397 (695)
191 1qks_A Cytochrome CD1 nitrite 99.7 1.2E-13 4.3E-18 110.2 26.0 211 10-242 197-478 (567)
192 3no2_A Uncharacterized protein 99.7 1.2E-13 4E-18 101.0 23.4 186 10-229 37-231 (276)
193 2z2n_A Virginiamycin B lyase; 99.7 7.7E-13 2.6E-17 97.5 27.1 198 9-240 56-254 (299)
194 2z2n_A Virginiamycin B lyase; 99.7 6.9E-13 2.4E-17 97.8 26.9 197 9-239 14-211 (299)
195 3dsm_A Uncharacterized protein 99.7 6.3E-14 2.2E-18 105.1 21.4 195 9-240 83-301 (328)
196 1qks_A Cytochrome CD1 nitrite 99.7 3.6E-13 1.2E-17 107.6 26.4 194 19-242 165-374 (567)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 8.5E-13 2.9E-17 98.1 26.6 201 10-241 71-299 (314)
198 3dsm_A Uncharacterized protein 99.6 1.6E-13 5.6E-18 102.8 21.9 194 11-241 45-253 (328)
199 3g4e_A Regucalcin; six bladed 99.6 2.3E-12 7.9E-17 95.2 26.8 192 9-229 53-260 (297)
200 3hrp_A Uncharacterized protein 99.6 3.7E-13 1.3E-17 103.8 23.1 203 10-240 131-353 (409)
201 3g4e_A Regucalcin; six bladed 99.6 1.1E-12 3.8E-17 96.9 24.3 204 10-241 13-229 (297)
202 3dr2_A Exported gluconolactona 99.6 1.4E-12 4.7E-17 96.8 24.6 191 7-232 83-298 (305)
203 1yr2_A Prolyl oligopeptidase; 99.6 1.9E-13 6.5E-18 113.2 21.5 196 18-241 115-350 (741)
204 2oiz_A Aromatic amine dehydrog 99.6 7E-13 2.4E-17 100.7 22.8 89 107-223 259-360 (361)
205 2qc5_A Streptogramin B lactona 99.6 5.8E-12 2E-16 92.8 26.9 197 10-240 62-259 (300)
206 2qc5_A Streptogramin B lactona 99.6 5.4E-12 1.9E-16 93.0 26.6 198 9-240 19-217 (300)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.5E-12 5.1E-17 96.8 23.6 204 9-240 17-255 (314)
208 3iuj_A Prolyl endopeptidase; h 99.6 2.6E-13 8.8E-18 111.6 18.2 197 10-241 129-359 (693)
209 2ghs_A AGR_C_1268P; regucalcin 99.6 9E-12 3.1E-16 93.3 24.5 199 11-240 50-259 (326)
210 1xip_A Nucleoporin NUP159; bet 99.6 1.3E-13 4.5E-18 104.5 14.1 144 57-241 39-191 (388)
211 2ghs_A AGR_C_1268P; regucalcin 99.6 4.1E-11 1.4E-15 89.7 27.6 190 9-229 89-290 (326)
212 3c75_H MADH, methylamine dehyd 99.5 1.7E-12 5.9E-17 99.7 19.5 206 8-243 118-404 (426)
213 3dr2_A Exported gluconolactona 99.5 1.1E-11 3.7E-16 92.0 23.1 198 8-240 43-266 (305)
214 2mad_H Methylamine dehydrogena 99.5 2.9E-11 9.9E-16 92.1 25.4 196 13-242 128-351 (373)
215 2qe8_A Uncharacterized protein 99.5 1.1E-11 3.9E-16 93.4 21.0 221 4-239 12-276 (343)
216 3hrp_A Uncharacterized protein 99.5 4.6E-11 1.6E-15 92.1 22.3 199 15-240 176-409 (409)
217 1mda_H Methylamine dehydrogena 99.4 1.5E-11 5E-16 93.0 16.7 200 8-242 65-347 (368)
218 2ece_A 462AA long hypothetical 99.4 2.4E-10 8E-15 87.4 23.1 194 12-229 140-399 (462)
219 2qe8_A Uncharacterized protein 99.4 8.3E-11 2.8E-15 88.7 18.8 199 9-234 66-314 (343)
220 3sjl_D Methylamine dehydrogena 99.4 1.5E-10 5.2E-15 87.6 18.7 198 13-242 140-364 (386)
221 3iuj_A Prolyl endopeptidase; h 99.4 8.9E-11 3E-15 96.6 18.7 199 13-241 178-405 (693)
222 2iwa_A Glutamine cyclotransfer 99.4 5.2E-10 1.8E-14 80.4 20.0 201 11-242 22-238 (266)
223 3sjl_D Methylamine dehydrogena 99.3 5.4E-10 1.9E-14 84.5 20.8 195 14-241 37-256 (386)
224 2hz6_A Endoplasmic reticulum t 99.3 2.2E-13 7.6E-18 103.7 2.1 181 20-241 8-192 (369)
225 2ece_A 462AA long hypothetical 99.3 9.4E-10 3.2E-14 84.1 21.7 211 19-240 93-351 (462)
226 1npe_A Nidogen, entactin; glyc 99.3 9.9E-08 3.4E-12 69.2 27.8 197 10-241 36-238 (267)
227 1fwx_A Nitrous oxide reductase 99.2 3.2E-09 1.1E-13 83.9 20.2 198 20-241 100-361 (595)
228 2mad_H Methylamine dehydrogena 99.2 1.6E-08 5.5E-13 77.0 22.9 146 15-176 26-194 (373)
229 2fp8_A Strictosidine synthase; 99.2 5.7E-08 1.9E-12 72.5 24.5 201 11-242 81-314 (322)
230 3nol_A Glutamine cyclotransfer 99.2 3.1E-08 1E-12 70.5 21.2 185 12-230 45-244 (262)
231 3c75_H MADH, methylamine dehyd 99.2 5.6E-09 1.9E-13 80.3 18.7 185 19-240 82-294 (426)
232 3qqz_A Putative uncharacterize 99.1 4.4E-07 1.5E-11 64.9 26.6 204 9-238 26-250 (255)
233 1kb0_A Quinohemoprotein alcoho 99.1 7.5E-09 2.6E-13 84.8 17.6 159 60-242 247-508 (677)
234 3nok_A Glutaminyl cyclase; bet 99.1 6.6E-08 2.3E-12 68.9 19.8 187 10-229 55-253 (268)
235 1fwx_A Nitrous oxide reductase 99.1 5.2E-09 1.8E-13 82.8 15.3 201 10-230 134-407 (595)
236 2xe4_A Oligopeptidase B; hydro 99.1 1E-07 3.5E-12 79.2 22.5 158 11-176 175-352 (751)
237 2fp8_A Strictosidine synthase; 99.1 1.2E-07 4E-12 70.8 20.9 199 11-239 20-267 (322)
238 2hz6_A Endoplasmic reticulum t 99.0 1.4E-10 4.8E-15 88.3 4.9 172 11-223 39-216 (369)
239 3mbr_X Glutamine cyclotransfer 99.0 3.8E-07 1.3E-11 64.4 21.6 189 9-230 20-223 (243)
240 1kb0_A Quinohemoprotein alcoho 99.0 3.7E-08 1.3E-12 80.7 18.8 183 14-227 247-536 (677)
241 1npe_A Nidogen, entactin; glyc 99.0 9.3E-07 3.2E-11 64.0 24.2 186 22-240 2-197 (267)
242 2p4o_A Hypothetical protein; p 99.0 8.6E-07 2.9E-11 65.6 24.1 200 10-240 32-241 (306)
243 1yiq_A Quinohemoprotein alcoho 99.0 4.6E-08 1.6E-12 80.4 18.7 182 14-226 239-533 (689)
244 1yiq_A Quinohemoprotein alcoho 99.0 6.5E-08 2.2E-12 79.5 19.1 159 60-242 239-506 (689)
245 3hxj_A Pyrrolo-quinoline quino 98.9 2.1E-07 7.1E-12 69.4 17.6 188 11-242 138-325 (330)
246 2iwa_A Glutamine cyclotransfer 98.9 4.7E-07 1.6E-11 65.1 18.3 166 46-242 10-182 (266)
247 3v64_C Agrin; beta propeller, 98.9 1E-05 3.6E-10 60.9 25.2 199 6-240 30-233 (349)
248 2p4o_A Hypothetical protein; p 98.9 5.4E-06 1.9E-10 61.3 23.1 191 9-230 71-277 (306)
249 3qqz_A Putative uncharacterize 98.8 8.6E-06 2.9E-10 58.2 22.5 170 50-241 21-204 (255)
250 3tc9_A Hypothetical hydrolase; 98.8 3.3E-06 1.1E-10 65.5 21.8 155 11-177 138-300 (430)
251 3hxj_A Pyrrolo-quinoline quino 98.8 8E-07 2.7E-11 66.2 17.7 176 21-239 107-282 (330)
252 1mda_H Methylamine dehydrogena 98.8 2.2E-07 7.5E-12 70.3 14.1 127 32-177 47-193 (368)
253 3nol_A Glutamine cyclotransfer 98.8 1.6E-06 5.5E-11 61.8 16.9 164 46-242 32-202 (262)
254 2p9w_A MAL S 1 allergenic prot 98.8 9E-06 3.1E-10 59.9 20.9 159 12-177 15-214 (334)
255 4hw6_A Hypothetical protein, I 98.8 9.3E-06 3.2E-10 63.1 22.3 220 10-240 182-432 (433)
256 3amr_A 3-phytase; beta-propell 98.8 1.8E-05 6.2E-10 58.8 22.6 197 21-240 40-262 (355)
257 1k3i_A Galactose oxidase precu 98.7 6.4E-07 2.2E-11 73.4 16.1 73 14-91 247-326 (656)
258 4hw6_A Hypothetical protein, I 98.7 1.3E-05 4.4E-10 62.3 22.4 156 11-177 140-303 (433)
259 3v65_B Low-density lipoprotein 98.7 2.9E-05 9.9E-10 59.4 24.0 193 11-240 78-276 (386)
260 2xe4_A Oligopeptidase B; hydro 98.7 9.2E-07 3.1E-11 73.6 16.7 113 57-176 175-302 (751)
261 3q7m_A Lipoprotein YFGL, BAMB; 98.7 8.5E-06 2.9E-10 62.0 20.6 144 21-178 53-207 (376)
262 3q7m_A Lipoprotein YFGL, BAMB; 98.7 8.1E-06 2.8E-10 62.1 20.4 187 20-241 102-296 (376)
263 3v65_B Low-density lipoprotein 98.7 4.4E-05 1.5E-09 58.4 24.2 196 9-238 115-315 (386)
264 2p9w_A MAL S 1 allergenic prot 98.7 4E-06 1.4E-10 61.8 17.2 169 51-241 8-215 (334)
265 3v64_C Agrin; beta propeller, 98.7 4.8E-05 1.6E-09 57.4 25.6 155 10-176 73-232 (349)
266 1k3i_A Galactose oxidase precu 98.6 8E-07 2.7E-11 72.8 13.7 116 14-134 190-325 (656)
267 3tc9_A Hypothetical hydrolase; 98.6 5.2E-06 1.8E-10 64.4 17.5 154 58-240 139-300 (430)
268 3p5b_L Low density lipoprotein 98.6 7.9E-05 2.7E-09 57.3 23.6 184 23-240 85-276 (400)
269 3nok_A Glutaminyl cyclase; bet 98.6 2.5E-05 8.5E-10 55.8 18.7 163 47-242 45-211 (268)
270 1kv9_A Type II quinohemoprotei 98.6 1.1E-05 3.8E-10 66.2 18.7 159 60-242 234-489 (668)
271 4a2l_A BT_4663, two-component 98.5 8.9E-05 3E-09 62.2 23.6 199 9-240 309-525 (795)
272 3mbr_X Glutamine cyclotransfer 98.5 3.4E-05 1.2E-09 54.5 17.9 164 46-242 10-180 (243)
273 4a2l_A BT_4663, two-component 98.5 0.00025 8.6E-09 59.5 26.0 199 9-240 405-613 (795)
274 1ijq_A LDL receptor, low-densi 98.5 0.00012 4.1E-09 54.3 25.1 183 23-240 3-194 (316)
275 2ad6_A Methanol dehydrogenase 98.5 2.2E-05 7.4E-10 63.2 17.8 76 61-138 240-341 (571)
276 1flg_A Protein (quinoprotein e 98.5 0.00021 7.2E-09 57.7 23.3 80 122-226 465-544 (582)
277 2xbg_A YCF48-like protein; pho 98.4 0.0002 6.9E-09 53.4 22.4 197 10-239 122-320 (327)
278 1kv9_A Type II quinohemoprotei 98.4 1.8E-05 6.1E-10 65.0 16.8 184 14-228 234-519 (668)
279 3m0c_C LDL receptor, low-densi 98.4 0.00045 1.5E-08 57.7 25.0 185 23-240 397-588 (791)
280 1ijq_A LDL receptor, low-densi 98.4 0.00026 8.9E-09 52.5 26.7 202 10-239 30-236 (316)
281 3sov_A LRP-6, low-density lipo 98.4 0.00027 9.1E-09 52.5 24.9 155 11-176 36-195 (318)
282 3v9f_A Two-component system se 98.4 0.00033 1.1E-08 58.7 23.2 202 9-241 362-568 (781)
283 3kya_A Putative phosphatase; s 98.4 0.0005 1.7E-08 54.0 24.4 159 11-177 140-340 (496)
284 3p5b_L Low density lipoprotein 98.4 0.00043 1.5E-08 53.2 27.8 160 9-176 111-275 (400)
285 3sov_A LRP-6, low-density lipo 98.3 0.00035 1.2E-08 51.9 21.6 185 23-240 6-196 (318)
286 1w6s_A Methanol dehydrogenase 98.3 8.4E-05 2.9E-09 60.0 18.0 76 61-138 246-348 (599)
287 1flg_A Protein (quinoprotein e 98.3 0.00021 7.1E-09 57.7 19.7 59 77-137 291-360 (582)
288 2ad6_A Methanol dehydrogenase 98.2 0.00019 6.6E-09 57.8 17.9 181 15-227 240-523 (571)
289 2vpj_A Kelch-like protein 12; 98.2 0.0007 2.4E-08 49.7 19.7 189 20-241 62-278 (301)
290 1w6s_A Methanol dehydrogenase 98.2 0.0011 3.9E-08 53.6 21.6 78 122-224 452-529 (599)
291 3sre_A PON1, serum paraoxonase 98.2 0.00096 3.3E-08 50.2 23.8 196 11-231 51-287 (355)
292 3sre_A PON1, serum paraoxonase 98.2 0.0011 3.6E-08 49.9 20.2 158 56-240 50-251 (355)
293 3kya_A Putative phosphatase; s 98.1 0.0016 5.4E-08 51.2 22.6 219 11-241 187-475 (496)
294 3v9f_A Two-component system se 98.1 0.0014 4.7E-08 54.9 21.8 195 9-240 406-610 (781)
295 3m0c_C LDL receptor, low-densi 98.1 0.0026 9E-08 53.1 27.4 160 9-176 423-587 (791)
296 1n7d_A LDL receptor, low-densi 98.1 5.3E-05 1.8E-09 62.5 12.9 159 10-176 406-569 (699)
297 3ii7_A Kelch-like protein 7; p 98.1 0.00041 1.4E-08 51.1 16.6 189 20-241 55-272 (306)
298 2xn4_A Kelch-like protein 2; s 98.1 0.00069 2.4E-08 49.8 17.7 189 20-241 61-276 (302)
299 2xbg_A YCF48-like protein; pho 98.1 0.0014 4.8E-08 48.8 24.1 193 10-235 80-273 (327)
300 3s94_A LRP-6, low-density lipo 98.1 0.0026 8.8E-08 51.8 22.2 156 10-176 40-200 (619)
301 2ism_A Putative oxidoreductase 98.1 0.0016 5.6E-08 49.0 23.9 103 10-119 31-152 (352)
302 3pbp_A Nucleoporin NUP82; beta 98.1 0.0018 6.2E-08 49.5 20.1 151 18-174 29-208 (452)
303 1cru_A Protein (soluble quinop 98.1 0.0018 6.3E-08 50.5 20.1 110 56-167 27-163 (454)
304 1zgk_A Kelch-like ECH-associat 98.0 0.00062 2.1E-08 50.2 16.1 189 20-241 70-287 (308)
305 3a9g_A Putative uncharacterize 98.0 0.001 3.5E-08 50.2 16.8 106 56-166 29-153 (354)
306 3a9g_A Putative uncharacterize 97.9 0.0031 1.1E-07 47.5 23.3 105 9-120 28-153 (354)
307 1n7d_A LDL receptor, low-densi 97.9 0.0001 3.5E-09 60.8 11.2 176 30-240 385-570 (699)
308 4a0p_A LRP6, LRP-6, low-densit 97.9 0.0058 2E-07 49.8 25.3 195 10-240 37-236 (628)
309 2uvk_A YJHT; unknown function, 97.9 0.0021 7.1E-08 48.4 17.2 140 20-166 65-260 (357)
310 2vpj_A Kelch-like protein 12; 97.9 0.0032 1.1E-07 46.1 19.1 189 20-241 14-231 (301)
311 4asc_A Kelch repeat and BTB do 97.9 0.0029 9.8E-08 46.8 17.4 148 18-177 43-220 (315)
312 1tl2_A L10, protein (tachylect 97.9 0.002 6.8E-08 44.7 14.9 150 10-176 41-206 (236)
313 3pbp_A Nucleoporin NUP82; beta 97.9 0.0048 1.6E-07 47.2 20.0 158 64-236 29-207 (452)
314 3das_A Putative oxidoreductase 97.9 0.0044 1.5E-07 46.4 19.7 115 50-166 26-158 (347)
315 1cru_A Protein (soluble quinop 97.9 0.0059 2E-07 47.7 20.5 110 9-120 26-162 (454)
316 3ii7_A Kelch-like protein 7; p 97.8 0.0042 1.4E-07 45.6 18.2 145 21-177 12-177 (306)
317 1zgk_A Kelch-like ECH-associat 97.8 0.0034 1.2E-07 46.2 16.3 191 18-241 22-240 (308)
318 2ism_A Putative oxidoreductase 97.8 0.0036 1.2E-07 47.2 16.6 106 56-166 31-153 (352)
319 2xn4_A Kelch-like protein 2; s 97.8 0.0055 1.9E-07 44.9 18.1 189 20-241 15-229 (302)
320 2woz_A Kelch repeat and BTB do 97.7 0.0069 2.4E-07 44.8 18.0 148 18-177 54-230 (318)
321 3s25_A Hypothetical 7-bladed b 97.7 0.0043 1.5E-07 45.7 15.8 138 15-176 58-214 (302)
322 3amr_A 3-phytase; beta-propell 97.7 0.0082 2.8E-07 44.8 20.9 171 4-177 62-262 (355)
323 2zwa_A Leucine carboxyl methyl 97.7 0.0086 2.9E-07 49.5 18.6 152 19-177 396-576 (695)
324 4a0p_A LRP6, LRP-6, low-densit 97.7 0.016 5.6E-07 47.2 25.5 185 23-241 8-197 (628)
325 2g8s_A Glucose/sorbosone dehyd 97.7 0.009 3.1E-07 45.0 17.1 105 10-119 18-147 (353)
326 2g8s_A Glucose/sorbosone dehyd 97.6 0.007 2.4E-07 45.6 15.5 107 57-166 19-148 (353)
327 3s25_A Hypothetical 7-bladed b 97.6 0.0097 3.3E-07 43.8 15.6 134 18-176 22-174 (302)
328 1tl2_A L10, protein (tachylect 97.5 0.0091 3.1E-07 41.4 15.8 109 56-172 41-157 (236)
329 3s94_A LRP-6, low-density lipo 97.4 0.034 1.2E-06 45.3 25.9 155 10-176 349-508 (619)
330 4asc_A Kelch repeat and BTB do 97.4 0.02 7E-07 42.2 18.0 185 23-241 7-221 (315)
331 2zwa_A Leucine carboxyl methyl 97.3 0.014 4.9E-07 48.2 15.6 154 20-178 451-635 (695)
332 3ei3_A DNA damage-binding prot 97.3 0.075 2.6E-06 46.6 26.0 193 21-237 844-1058(1158)
333 3das_A Putative oxidoreductase 97.2 0.037 1.3E-06 41.5 27.4 152 9-165 31-219 (347)
334 2woz_A Kelch repeat and BTB do 97.2 0.041 1.4E-06 40.6 16.7 143 22-177 17-183 (318)
335 2uvk_A YJHT; unknown function, 97.1 0.03 1E-06 42.0 14.6 98 20-122 19-128 (357)
336 2xzh_A Clathrin heavy chain 1; 97.0 0.055 1.9E-06 40.0 25.0 201 9-240 106-331 (365)
337 2xzh_A Clathrin heavy chain 1; 96.9 0.079 2.7E-06 39.2 27.4 204 14-242 71-291 (365)
338 1bpo_A Protein (clathrin); cla 96.8 0.12 3.9E-06 40.0 26.2 200 10-240 106-330 (494)
339 1bpo_A Protein (clathrin); cla 96.6 0.16 5.3E-06 39.3 26.0 204 14-242 70-290 (494)
340 1xi4_A Clathrin heavy chain; a 96.2 0.54 1.8E-05 42.1 17.0 203 15-242 71-290 (1630)
341 1xi4_A Clathrin heavy chain; a 96.1 0.7 2.4E-05 41.4 17.3 159 9-177 105-288 (1630)
342 3sbq_A Nitrous-oxide reductase 96.0 0.24 8.2E-06 39.6 12.8 77 101-177 322-407 (638)
343 2wg3_C Hedgehog-interacting pr 95.7 0.4 1.4E-05 37.5 13.0 109 10-121 14-158 (463)
344 2wg3_C Hedgehog-interacting pr 95.5 0.64 2.2E-05 36.4 14.2 110 57-168 15-159 (463)
345 3ei3_A DNA damage-binding prot 95.2 1.5 5.1E-05 38.8 27.8 104 22-132 524-636 (1158)
346 3sbq_A Nitrous-oxide reductase 94.9 1.2 4E-05 35.8 18.4 85 148-241 323-408 (638)
347 2be1_A Serine/threonine-protei 94.7 0.18 6.1E-06 37.7 8.0 117 68-205 11-139 (339)
348 2be1_A Serine/threonine-protei 94.6 0.93 3.2E-05 33.9 11.6 28 66-95 110-137 (339)
349 3q6k_A 43.2 kDa salivary prote 93.8 1.7 5.7E-05 33.1 17.3 216 12-241 28-306 (381)
350 3b7f_A Glycosyl hydrolase, BNR 92.4 2.8 9.5E-05 31.8 20.9 156 9-169 54-254 (394)
351 3b7f_A Glycosyl hydrolase, BNR 92.3 2.9 0.0001 31.7 21.2 144 23-172 24-202 (394)
352 1sqj_A OXG-RCBH, oligoxylogluc 91.9 5.2 0.00018 33.8 15.0 113 55-169 14-143 (789)
353 3ott_A Two-component system se 90.0 7.6 0.00026 32.4 23.4 191 10-241 63-260 (758)
354 3qhy_B Beta-lactamase inhibito 89.9 4.3 0.00015 29.4 14.8 141 11-176 25-166 (282)
355 1suu_A DNA gyrase subunit A; t 86.4 8.1 0.00028 28.4 21.6 209 19-242 6-232 (312)
356 3zwu_A Alkaline phosphatase PH 86.0 4.4 0.00015 32.9 8.3 59 150-228 478-548 (592)
357 3uc1_A DNA gyrase subunit A; D 85.3 9.6 0.00033 28.3 17.1 208 22-242 4-229 (327)
358 4gq2_M Nucleoporin NUP120; bet 84.6 15 0.00051 31.9 11.4 32 211-242 236-267 (950)
359 1sqj_A OXG-RCBH, oligoxylogluc 84.4 18 0.00061 30.6 20.9 155 9-168 14-190 (789)
360 3qhy_B Beta-lactamase inhibito 83.4 11 0.00036 27.3 15.8 141 11-176 64-205 (282)
361 3zwu_A Alkaline phosphatase PH 83.4 5.9 0.0002 32.2 8.0 61 104-165 478-548 (592)
362 4gq2_M Nucleoporin NUP120; bet 82.7 23 0.00079 30.7 20.1 32 149-180 237-268 (950)
363 4a9v_A PHOX; hydrolase, beta-p 82.5 9.9 0.00034 30.7 8.8 61 148-228 476-548 (592)
364 4fhn_B Nucleoporin NUP120; pro 81.4 21 0.00072 31.7 11.3 31 212-242 239-269 (1139)
365 4fhn_B Nucleoporin NUP120; pro 81.3 8.3 0.00028 34.1 8.8 32 149-180 239-270 (1139)
366 3no0_A DNA gyrase subunit A; D 80.4 14 0.00048 26.6 22.6 210 9-242 23-247 (276)
367 3uc1_A DNA gyrase subunit A; D 80.1 16 0.00054 27.1 22.6 174 55-242 94-280 (327)
368 3ott_A Two-component system se 79.9 25 0.00087 29.3 25.8 199 10-240 324-544 (758)
369 3no0_A DNA gyrase subunit A; D 79.7 15 0.0005 26.5 20.4 171 56-242 24-197 (276)
370 2cn3_A Xyloglucanase, beta-1,4 78.2 29 0.00099 29.0 17.1 106 11-121 24-152 (737)
371 4a9v_A PHOX; hydrolase, beta-p 78.0 17 0.00058 29.5 8.7 61 103-166 477-549 (592)
372 1wp5_A Topoisomerase IV; broke 75.6 22 0.00075 26.3 21.4 209 19-242 3-226 (323)
373 3l6v_A GYRA, DNA gyrase subuni 75.3 24 0.00083 26.7 21.9 157 17-176 3-178 (370)
374 1zi0_A DNA gyrase subunit A; b 69.2 31 0.0011 25.2 20.8 208 19-242 1-227 (307)
375 2cn3_A Xyloglucanase, beta-1,4 67.8 53 0.0018 27.5 15.1 110 56-167 23-152 (737)
376 3al9_A Plexin-A2; beta-propell 65.4 52 0.0018 26.4 9.3 71 103-173 401-476 (539)
377 3al9_A Plexin-A2; beta-propell 59.7 67 0.0023 25.8 8.8 73 9-81 399-476 (539)
378 1olz_A Semaphorin 4D; developm 59.4 74 0.0025 26.4 9.1 58 115-173 417-477 (663)
379 3nvq_A Semaphorin-7A; beta-pro 53.7 89 0.003 25.5 8.5 59 115-173 382-444 (590)
380 1q47_A Semaphorin 3A; beta pro 51.9 75 0.0026 25.2 7.8 59 115-173 423-487 (495)
381 3f7f_A Nucleoporin NUP120; nuc 50.6 33 0.0011 28.7 5.6 35 150-204 224-258 (729)
382 3ol2_B Plexin-B1; beta-propell 50.2 61 0.0021 26.0 7.0 71 103-173 388-461 (528)
383 1zvt_A Topoisomerase IV subuni 48.7 69 0.0024 22.7 13.7 80 148-242 84-164 (256)
384 4hvt_A Ritya.17583.B, post-pro 48.3 1.2E+02 0.0041 25.4 20.8 28 13-40 132-165 (711)
385 1q47_A Semaphorin 3A; beta pro 47.8 63 0.0022 25.6 6.8 70 57-127 405-487 (495)
386 3q6k_A 43.2 kDa salivary prote 45.5 99 0.0034 23.6 22.0 162 11-177 88-305 (381)
387 3a0f_A Xyloglucanase; beta-pro 45.4 1.4E+02 0.0047 25.2 16.9 114 54-169 19-155 (763)
388 4h3o_A Lectin; cadmium, plant 40.1 57 0.0019 19.3 9.8 46 106-165 54-99 (105)
389 4gz8_A Semaphorin-3A; multi-do 40.0 1.2E+02 0.0039 25.3 7.3 57 69-127 431-495 (667)
390 1olz_A Semaphorin 4D; developm 39.8 1.2E+02 0.0042 25.1 7.5 58 69-127 417-477 (663)
391 4gz8_A Semaphorin-3A; multi-do 37.2 1.8E+02 0.0062 24.2 11.9 59 115-173 431-495 (667)
392 3nvq_A Semaphorin-7A; beta-pro 36.6 1.3E+02 0.0043 24.6 6.9 58 69-127 382-444 (590)
393 3kci_A Probable E3 ubiquitin-p 34.9 1.4E+02 0.0049 22.4 24.4 150 23-176 64-239 (389)
394 1suu_A DNA gyrase subunit A; t 34.8 1.3E+02 0.0045 21.9 25.1 165 11-177 48-230 (312)
395 3ol2_B Plexin-B1; beta-propell 31.2 1.9E+02 0.0066 23.2 7.1 68 58-127 389-461 (528)
396 1zi0_A DNA gyrase subunit A; b 28.5 1.7E+02 0.0059 21.3 24.3 175 55-242 94-278 (307)
397 3kci_A Probable E3 ubiquitin-p 26.5 2.1E+02 0.0071 21.5 26.3 160 11-176 106-291 (389)
398 4fww_A Macrophage-stimulating 22.5 2.4E+02 0.0082 22.5 6.4 70 103-173 406-479 (527)
399 3oky_A Plexin-A2; transmembran 21.9 3.5E+02 0.012 22.6 7.8 60 114-173 413-475 (681)
400 3oky_A Plexin-A2; transmembran 21.6 2.4E+02 0.0083 23.5 6.3 57 69-127 414-475 (681)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.8e-42 Score=256.30 Aligned_cols=226 Identities=15% Similarity=0.176 Sum_probs=190.6
Q ss_pred eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529 3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW 82 (244)
Q Consensus 3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 82 (244)
..+..|.+.|.+++|+|++++|++++.||.|++||+.+ + ..+..+..|..+|.+++|+|++++|++|+.|+.|++|
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET--Q--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--T--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--C--ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 34566799999999999999999999999999999987 5 6788899999999999999999999999999999999
Q ss_pred eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC-CCCE
Q psy11529 83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP-NNHL 161 (244)
Q Consensus 83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~ 161 (244)
| ..+++. ...+.+|...|.+++|+|++++|++++.|++|++||++.+.. ......+|...|.+++|+| ++.+
T Consensus 83 d--~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---~~~~~~~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 83 N--YNTGEK--VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA---LEQTFEGHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp E--TTTCCE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE---EEEEECCCCSCEEEEEECTTCTTE
T ss_pred E--CCCCcE--EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc---hhhhhcccCCcEEEEEECCCCCCE
Confidence 9 777764 344568999999999999999999999999999999988753 4556778899999999999 6789
Q ss_pred EEEeeCCCeEEEEEeeecccccC----C-------------CCCCC--Cc--------cccccceeEEecCCCCCCCCeE
Q psy11529 162 LGCGSTDFKVRVFSAYIKDIESA----P-------------QSTNW--GS--------KSTLGNCLVELNNSSSGGGWIH 214 (244)
Q Consensus 162 l~~~~~dg~i~i~d~~~~~~~~~----~-------------~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~v~ 214 (244)
|++|+.|+.|++||++....... . ..... +. ....++++..+.+| ...|.
T Consensus 156 l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h---~~~v~ 232 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---MSNVS 232 (304)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC---SSCEE
T ss_pred EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC---CCCEE
Confidence 99999999999999864322110 0 00000 00 23456777888888 89999
Q ss_pred EEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 215 SVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 215 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
+++|+|++++|++++.||+|++||+++.
T Consensus 233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999999999999999864
No 2
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.9e-42 Score=254.08 Aligned_cols=218 Identities=17% Similarity=0.315 Sum_probs=183.5
Q ss_pred CceeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC--CCCeEEEEeCCcc
Q psy11529 1 MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP--NTNRIVTCSADRN 78 (244)
Q Consensus 1 m~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~ 78 (244)
|.-++..|.+.|++++|+|+|++||+|+.|+.|+||++.+ +..+.+..+.+|.++|.+++|+| ++++|++|+.|++
T Consensus 1 ~~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~--~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 1 MVVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEG--ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp -CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCS--SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred CceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCC--CCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 5566677899999999999999999999999999999975 32367788999999999999987 3899999999999
Q ss_pred EEEEeeeCCCCCceeeEEEeccCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH 156 (244)
Q Consensus 79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 156 (244)
|++|| +.+++......+..|...|.+++|+|+ +.+|++++.|+.|++||++..... .......|...|.+++|+
T Consensus 79 v~iWd--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~--~~~~~~~h~~~v~~~~~~ 154 (297)
T 2pm7_B 79 VMIWK--EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT--SPIIIDAHAIGVNSASWA 154 (297)
T ss_dssp EEEEE--BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB--CCEEEECCSSCEEEEEEC
T ss_pred EEEEE--cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce--eeeeeecccCccceEeec
Confidence 99999 666654445556678999999999998 889999999999999999876431 123456788899999999
Q ss_pred CC-------------CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC-
Q psy11529 157 PN-------------NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG- 222 (244)
Q Consensus 157 p~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~- 222 (244)
|+ +++|++|+.|++|++||++... ........+.+| ...|.+++|+|++
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~--------------~~~~~~~~l~~H---~~~V~~v~~sp~~~ 217 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------------QTYVLESTLEGH---SDWVRDVAWSPTVL 217 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEETTT--------------TEEEEEEEECCC---SSCEEEEEECCCCS
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC--------------ceEEEEEEecCC---CCceEEEEECCCCC
Confidence 97 5799999999999999994321 112256678888 8999999999985
Q ss_pred --CEEEEeeCCCcEEEEeCCC
Q psy11529 223 --NKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 223 --~~l~~~~~dg~i~vwd~~~ 241 (244)
.+|++++.|++|++||+++
T Consensus 218 ~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 218 LRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp SSEEEEEEETTSCEEEEEESS
T ss_pred CceEEEEEECCCcEEEEEeCC
Confidence 7999999999999999875
No 3
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-41 Score=255.16 Aligned_cols=209 Identities=20% Similarity=0.373 Sum_probs=178.7
Q ss_pred eCCC-ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeee-eeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529 7 FGIN-PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLD-VLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 7 ~~~~-~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 84 (244)
.|.+ .|.+++|+|+|++||+|+.|+.|+||++.+ +...... ...+|...|.+++|+|++++|++++.|+.+++||
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~--~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~- 89 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEG--DSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK- 89 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEET--TEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEE-
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCC--CcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEE-
Confidence 3555 999999999999999999999999999987 4222222 3468999999999999999999999999999999
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC 164 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 164 (244)
...+.......+.+|...|.+++|+|++++|++++.|+.|++||++.... .........|...|.+++|+|++++|++
T Consensus 90 -~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 90 -KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE-YECVSVLNSHTQDVKHVVWHPSQELLAS 167 (345)
T ss_dssp -ECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC-EEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred -ccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC-eEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence 66665555666778999999999999999999999999999999988754 2234556778899999999999999999
Q ss_pred eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529 165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS 239 (244)
Q Consensus 165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 239 (244)
++.|+.|++||++.. ...+...+.+| ...|.+++|+|+|++|++++.|++|++||+
T Consensus 168 ~s~d~~i~~w~~~~~----------------~~~~~~~~~~h---~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 168 ASYDDTVKLYREEED----------------DWVCCATLEGH---ESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EETTSCEEEEEEETT----------------EEEEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EeCCCcEEEEEecCC----------------CEEEEEEecCC---CCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 999999999998421 12345678888 899999999999999999999999999996
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=256.09 Aligned_cols=204 Identities=15% Similarity=0.194 Sum_probs=172.6
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC-eEEEEeCCccEEEEeee
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRNAYVWTQN 85 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~ 85 (244)
.|.+.|++++|+|+|++|++|+.|+.|++||+.+ + +.+..+.+|...|.+++|+|++. +|++++.|++|++||
T Consensus 125 ~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~--~--~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd-- 198 (344)
T 4gqb_B 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ--Q--VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD-- 198 (344)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEE--
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--C--cEEEEEcCcCCceEEEEecCCCCCceeeecccccccccc--
Confidence 4689999999999999999999999999999987 5 78889999999999999999875 788999999999999
Q ss_pred CCCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-CEEE
Q psy11529 86 NDDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-HLLG 163 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~ 163 (244)
+++++....+....+...+.+++|+|+ +++|++|+.|+.|++||+++++. ......|...|++++|+|++ ++|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~----~~~~~~h~~~v~~v~fsp~g~~~la 274 (344)
T 4gqb_B 199 TRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC----VLSSAVHSQCVTGLVFSPHSVPFLA 274 (344)
T ss_dssp TTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C----CEEEECCSSCEEEEEECSSSSCCEE
T ss_pred ccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE----EEEEcCCCCCEEEEEEccCCCeEEE
Confidence 777775554444456667999999995 56789999999999999998875 44556788999999999998 5899
Q ss_pred EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEeeCCCcEEEEeCCCC
Q psy11529 164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~ 242 (244)
+|+.|++|+|||+ ..+++ ..+.+| ...|++++|+|+++ +|++++.|++|++|++.+.
T Consensus 275 sgs~D~~i~vwd~------------------~~~~~-~~~~~H---~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 275 SLSEDCSLAVLDS------------------SLSEL-FRSQAH---RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEETTSCEEEECT------------------TCCEE-EEECCC---SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EEeCCCeEEEEEC------------------CCCcE-EEEcCC---CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 9999999999998 44544 457788 89999999999987 5778999999999999754
No 5
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-42 Score=263.95 Aligned_cols=232 Identities=50% Similarity=0.935 Sum_probs=190.4
Q ss_pred eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529 3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW 82 (244)
Q Consensus 3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 82 (244)
++++++.++|++++|+|++++|++++.|+.|++|++.+ +.++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDG--NGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEET--TEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccC--CceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 67888899999999999999999999999999999987 5446778889999999999999999999999999999999
Q ss_pred eeeCCCCC-ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529 83 TQNNDDKK-WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL 161 (244)
Q Consensus 83 d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 161 (244)
| +.++. ......+..|...+.+++|+|++++|++++.|+.|++||++..+..........+|...|.+++|+|++++
T Consensus 83 d--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 83 E--KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp --------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred E--cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 9 66655 44456667799999999999999999999999999999999876322233343448899999999999999
Q ss_pred EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
|++++.|+.|++||++............++.....++++..+ .| ...|.+++|+|++++|++++.||.|++||+++
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 236 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS---GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA 236 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC---SSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC---CceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999776665555555555555567777777 77 89999999999999999999999999999876
Q ss_pred C
Q psy11529 242 V 242 (244)
Q Consensus 242 ~ 242 (244)
.
T Consensus 237 ~ 237 (377)
T 3dwl_C 237 P 237 (377)
T ss_dssp T
T ss_pred C
Confidence 4
No 6
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.7e-40 Score=252.47 Aligned_cols=234 Identities=56% Similarity=1.088 Sum_probs=203.1
Q ss_pred ceeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529 2 AEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV 81 (244)
Q Consensus 2 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 81 (244)
.+++++|.++|++++|+|++++|++++.|+.|++|++.+ ++++....+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 1 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~v 78 (372)
T 1k8k_C 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG--NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 78 (372)
T ss_dssp -CEEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEET--TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CceecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC--CcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEE
Confidence 368889999999999999999999999999999999987 533488889999999999999999999999999999999
Q ss_pred EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529 82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL 161 (244)
Q Consensus 82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 161 (244)
|| +.+++.........+...+.+++|+|++++|++++.|+.+++||++.............+|...+.+++|+|++++
T Consensus 79 wd--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 79 WT--LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp EE--EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred EE--CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 99 6676655555556788999999999999999999999999999999987644455666778899999999999999
Q ss_pred EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
|++++.||.|++||++............++.....++.+..+..| ...|.+++|+|++++|++++.||.|++||+++
T Consensus 157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS---CGWVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC---SSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC---CCeEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 999999999999998765554444444444444567888888888 89999999999999999999999999999976
Q ss_pred C
Q psy11529 242 V 242 (244)
Q Consensus 242 ~ 242 (244)
.
T Consensus 234 ~ 234 (372)
T 1k8k_C 234 K 234 (372)
T ss_dssp T
T ss_pred C
Confidence 4
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=249.19 Aligned_cols=201 Identities=16% Similarity=0.190 Sum_probs=181.9
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
.+...+.+++|+|++++|++++.++.|++|++.. + +....+..|...|.+++|+|++++|++++.|+.|++|| +
T Consensus 120 ~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~--~--~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd--~ 193 (321)
T 3ow8_A 120 AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES--G--KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD--I 193 (321)
T ss_dssp CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT--C--SEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE--T
T ss_pred CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC--C--ceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEE--C
Confidence 3567788999999999999999999999999987 4 56677888999999999999999999999999999999 7
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS 166 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 166 (244)
.+++. ...+..|...|.+++|+|++++|++++.|+.|++||++.... ......|...|.+++|+|++++|++++
T Consensus 194 ~~~~~--~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~s~s 267 (321)
T 3ow8_A 194 ATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL----AGTLSGHASWVLNVAFCPDDTHFVSSS 267 (321)
T ss_dssp TTTEE--EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcE--EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce----eEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 77764 344567889999999999999999999999999999988764 456678889999999999999999999
Q ss_pred CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529 167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 240 (244)
.|++|++||+ .+++++..+.+| ...|.+++|+|++++|++++.||.|++||+.
T Consensus 268 ~D~~v~iwd~------------------~~~~~~~~~~~h---~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 268 SDKSVKVWDV------------------GTRTCVHTFFDH---QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTSCEEEEET------------------TTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCcEEEEeC------------------CCCEEEEEEcCC---CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999 678889999998 8999999999999999999999999999974
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.7e-40 Score=249.86 Aligned_cols=207 Identities=18% Similarity=0.180 Sum_probs=169.4
Q ss_pred CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND 87 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 87 (244)
++.+|.+++|+|++ .|++|+.||.|+|||+.+..........+.+|...|++++|+|++++|++|+.|++|++|| +.
T Consensus 81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd--~~ 157 (344)
T 4gqb_B 81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD--LA 157 (344)
T ss_dssp ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE--TT
T ss_pred cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE--CC
Confidence 35789999999985 6789999999999999772111122234568999999999999999999999999999999 77
Q ss_pred CCCceeeEEEeccCcceEEEEECCCCC-eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC-CCEEEEe
Q psy11529 88 DKKWKPTLVLLRINRAATCVKWSPLEN-KFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN-NHLLGCG 165 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~ 165 (244)
+++. ...+.+|...|.+++|+|++. +|++++.|++|++||+++.+. ........+...+.+++|+|+ +++|++|
T Consensus 158 ~~~~--~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 158 QQVV--LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp TTEE--EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred CCcE--EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce--eeeeecceeeccceeeeecCCCCcceEEe
Confidence 7764 445578999999999999874 688999999999999998876 112222344567899999995 5689999
Q ss_pred eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC-CEEEEeeCCCcEEEEeCCCC
Q psy11529 166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG-NKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~ 242 (244)
+.||.|++||+ .+++++..+.+| ...|++++|+|++ ++|++|+.|++|+|||+++.
T Consensus 234 ~~dg~v~~wd~------------------~~~~~~~~~~~h---~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 234 DENGTVSLVDT------------------KSTSCVLSSAVH---SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp ETTSEEEEEES------------------CC--CCEEEECC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred ccCCcEEEEEC------------------CCCcEEEEEcCC---CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 99999999999 667888899999 9999999999998 58999999999999998753
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-40 Score=247.41 Aligned_cols=204 Identities=17% Similarity=0.227 Sum_probs=184.1
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN 85 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 85 (244)
..|...|.+++|+|++.++++++.|+.|++||+.+ + +.+..+..|...+.+++|+|++++|++++.|+.|++||
T Consensus 77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~--~--~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~-- 150 (321)
T 3ow8_A 77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN--G--KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG-- 150 (321)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--T--EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEE--
T ss_pred ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC--C--CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEE--
Confidence 34688999999999999999999999999999987 5 67788888999999999999999999999999999999
Q ss_pred CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
.++++. ...+..+...+.+++|+|++++|++++.|+.|++||+++++. ......|...|.+++|+|++++|+++
T Consensus 151 ~~~~~~--~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~spd~~~l~s~ 224 (321)
T 3ow8_A 151 VESGKK--EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL----LHTLEGHAMPIRSLTFSPDSQLLVTA 224 (321)
T ss_dssp TTTCSE--EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EEEECCCSSCCCEEEECTTSCEEEEE
T ss_pred cCCCce--eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE----EEEEcccCCceeEEEEcCCCCEEEEE
Confidence 777764 344456788899999999999999999999999999988754 45567788999999999999999999
Q ss_pred eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
+.|+.|++||+ ..++....+.+| ...|.+++|+|++++|++++.|++|++||+++.
T Consensus 225 s~dg~i~iwd~------------------~~~~~~~~~~~h---~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 225 SDDGYIKIYDV------------------QHANLAGTLSGH---ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp CTTSCEEEEET------------------TTCCEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred cCCCeEEEEEC------------------CCcceeEEEcCC---CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 99999999999 567788889998 899999999999999999999999999999763
No 10
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-39 Score=244.80 Aligned_cols=212 Identities=19% Similarity=0.338 Sum_probs=173.4
Q ss_pred EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee-cc-CCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529 5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-DG-HDLKVTGIDWAPNTNRIVTCSADRNAYVW 82 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 82 (244)
+..|.++|.+++|+|+ +|++|+.|+.|++|++.. +.......+ .+ |...|.+++|+|++++|++++.|++|++|
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~--~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKY--DDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSS--SCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecC--CCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 4557899999999988 999999999999999976 333455555 44 99999999999999999999999999999
Q ss_pred eeeCCCC-----CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529 83 TQNNDDK-----KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP 157 (244)
Q Consensus 83 d~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 157 (244)
| .... .......+.+|...|.+++|+|++++|++++.|++|++||++..............|...|.+++|+|
T Consensus 86 ~--~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 86 A--KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp E--C-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred E--cccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence 9 4322 12234456789999999999999999999999999999999654322234556678889999999999
Q ss_pred CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC--CCEEEEeeCCCcEE
Q psy11529 158 NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD--GNKLCWTSHDGSIN 235 (244)
Q Consensus 158 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~ 235 (244)
++++|++++.|++|++||.+.. ..+++..+.+| ...|.+++|+|+ +.+|++++.|++|+
T Consensus 164 ~~~~l~s~s~D~~i~iW~~~~~----------------~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~s~D~~v~ 224 (330)
T 2hes_X 164 SEALLASSSYDDTVRIWKDYDD----------------DWECVAVLNGH---EGTVWSSDFDKTEGVFRLCSGSDDSTVR 224 (330)
T ss_dssp SSSEEEEEETTSCEEEEEEETT----------------EEEEEEEECCC---SSCEEEEEECCSSSSCEEEEEETTSCEE
T ss_pred CCCEEEEEcCCCeEEEEECCCC----------------CeeEEEEccCC---CCcEEEEEecCCCCeeEEEEEeCCCeEE
Confidence 9999999999999999998421 12577888898 899999999998 77899999999999
Q ss_pred EEeCCC
Q psy11529 236 VRMSQQ 241 (244)
Q Consensus 236 vwd~~~ 241 (244)
+||++.
T Consensus 225 iw~~~~ 230 (330)
T 2hes_X 225 VWKYMG 230 (330)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999853
No 11
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.4e-40 Score=247.89 Aligned_cols=205 Identities=12% Similarity=0.199 Sum_probs=182.4
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN 85 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 85 (244)
..|.++|.+++|+|++++|++|+.||.|++||+.+ + .....+..|...|.+++|+|++++|++++.|+.+++|+
T Consensus 52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~--~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~-- 125 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT--T--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN-- 125 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--C--CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE--
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--C--CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE--
Confidence 34689999999999999999999999999999876 4 67778888999999999999999999999999999999
Q ss_pred CCCCC--ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 86 NDDKK--WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 86 ~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
+.+.. ......+.+|...+.++.|++++. +++++.|+.|++||+++++. ......|...|.+++|+|++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ----TTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE----EEEEcCCCCceEEEEECCCCCEEE
Confidence 55543 233445678999999999998765 88999999999999988754 455678889999999999999999
Q ss_pred EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
+|+.|+.|++||+ ..+++...+.+| ...|.+++|+|++++|++++.||+|++||+++.
T Consensus 201 sg~~d~~v~~wd~------------------~~~~~~~~~~~h---~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 201 SGACDASAKLWDV------------------REGMCRQTFTGH---ESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp EEETTSCEEEEET------------------TTCSEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EEeCCCcEEEEEC------------------CCCeeEEEEcCC---cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 9999999999999 667888889998 899999999999999999999999999999753
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.3e-40 Score=253.11 Aligned_cols=205 Identities=18% Similarity=0.339 Sum_probs=185.7
Q ss_pred EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529 5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 84 (244)
+..|.+.|.+++|+|++++|++|+.|++|++||+.+ . +.+..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 146 l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~--~--~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd- 220 (410)
T 1vyh_C 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--F--ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE- 220 (410)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--S--CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEE-
T ss_pred EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--C--ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-
Confidence 345789999999999999999999999999999977 4 67888999999999999999999999999999999999
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC------
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN------ 158 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~------ 158 (244)
+.++... ..+.+|...+.++.|+|++.+|++++.|+.|++||+++... ......|...|.+++|+|+
T Consensus 221 -~~~~~~~--~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~ 293 (410)
T 1vyh_C 221 -VQTGYCV--KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC----KAELREHRHVVECISWAPESSYSSI 293 (410)
T ss_dssp -TTTCCEE--EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECCSCGGGGG
T ss_pred -CCCCcEE--EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce----eeEecCCCceEEEEEEcCcccccch
Confidence 7777643 44567899999999999999999999999999999988764 4556778899999999996
Q ss_pred --------------CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCE
Q psy11529 159 --------------NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNK 224 (244)
Q Consensus 159 --------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 224 (244)
+.+|++|+.|+.|++||+ ..++++..+.+| ...|.+++|+|+|++
T Consensus 294 ~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~------------------~~~~~~~~~~~h---~~~v~~v~~~~~g~~ 352 (410)
T 1vyh_C 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDV------------------STGMCLMTLVGH---DNWVRGVLFHSGGKF 352 (410)
T ss_dssp GGCCSCC-------CCEEEEEETTSEEEEEET------------------TTTEEEEEEECC---SSCEEEEEECSSSSC
T ss_pred hhhccccccccCCCCCEEEEEeCCCeEEEEEC------------------CCCceEEEEECC---CCcEEEEEEcCCCCE
Confidence 668999999999999999 678888999998 899999999999999
Q ss_pred EEEeeCCCcEEEEeCCCC
Q psy11529 225 LCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 225 l~~~~~dg~i~vwd~~~~ 242 (244)
|++++.||.|++||+++.
T Consensus 353 l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 353 ILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp EEEEETTTEEEEECCTTS
T ss_pred EEEEeCCCeEEEEECCCC
Confidence 999999999999999764
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.8e-40 Score=253.97 Aligned_cols=205 Identities=17% Similarity=0.229 Sum_probs=184.5
Q ss_pred EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529 5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 84 (244)
...|.++|++++|+|++++|++|+.|+.|+|||+.+ + +....+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~--~--~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd- 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--G--DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD- 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT--C--CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE-
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C--cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe-
Confidence 345789999999999999999999999999999987 5 66788999999999999999999999999999999999
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC 164 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 164 (244)
+.+++. ...+.+|...|.+++|+|++++|++++.|++|++||++++.. ......|...+.++.|+|++++|++
T Consensus 179 -~~~~~~--~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 179 -FQGFEC--IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC----VKTFTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp -TTSSCE--EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECTTSSEEEE
T ss_pred -CCCCce--eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE----EEEEeCCCccEEEEEECCCCCEEEE
Confidence 666653 334467899999999999999999999999999999998864 4556678899999999999999999
Q ss_pred eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC--------------------CCE
Q psy11529 165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD--------------------GNK 224 (244)
Q Consensus 165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~ 224 (244)
|+.|+.|++||+ ..+++...+..| ...|.+++|+|+ |.+
T Consensus 252 ~s~D~~v~vwd~------------------~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 310 (410)
T 1vyh_C 252 CSNDQTVRVWVV------------------ATKECKAELREH---RHVVECISWAPESSYSSISEATGSETKKSGKPGPF 310 (410)
T ss_dssp EETTSCEEEEET------------------TTCCEEEEECCC---SSCEEEEEECCSCGGGGGGGCCSCC-------CCE
T ss_pred EcCCCeEEEEEC------------------CCCceeeEecCC---CceEEEEEEcCcccccchhhhccccccccCCCCCE
Confidence 999999999999 667788888888 899999999996 678
Q ss_pred EEEeeCCCcEEEEeCCCC
Q psy11529 225 LCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 225 l~~~~~dg~i~vwd~~~~ 242 (244)
|++|+.|+.|++||+++.
T Consensus 311 l~sgs~D~~i~iwd~~~~ 328 (410)
T 1vyh_C 311 LLSGSRDKTIKMWDVSTG 328 (410)
T ss_dssp EEEEETTSEEEEEETTTT
T ss_pred EEEEeCCCeEEEEECCCC
Confidence 999999999999999753
No 14
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.6e-40 Score=248.80 Aligned_cols=214 Identities=18% Similarity=0.349 Sum_probs=177.4
Q ss_pred EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC--CCCeEEEEeCCccEEEE
Q psy11529 5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP--NTNRIVTCSADRNAYVW 82 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iw 82 (244)
...|.++|++++|+|+|++||+|+.|++|+|||+.. +....+..+.+|...|.+++|+| ++++|++++.|++|++|
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~--~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRN--GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEET--TEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecC--CCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 345789999999999999999999999999999976 43345678899999999999986 48999999999999999
Q ss_pred eeeCCCCCceeeEEEeccCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC--
Q psy11529 83 TQNNDDKKWKPTLVLLRINRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN-- 158 (244)
Q Consensus 83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-- 158 (244)
| .+++.......+.+|...|.+++|+|+ +.+|++++.|+.|++||++.... +........|...+.+++|+|+
T Consensus 87 d--~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 87 R--EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-WEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp C--CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-EEECCBTTSSSSCBCCCEECCCCC
T ss_pred E--CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-cceeeeeccccCCcceEEEccccC
Confidence 9 677654455566789999999999998 78999999999999999987643 1223445678889999999997
Q ss_pred ---------------CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC-
Q psy11529 159 ---------------NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG- 222 (244)
Q Consensus 159 ---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~- 222 (244)
+++|++|+.|+.|++||++.. ...+.+..+.+| ...|.+++|+|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~---------------~~~~~~~~l~~h---~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED---------------GQWKEEQKLEAH---SDWVRDVAWAPSIG 225 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTT---------------SCEEEEECCBCC---SSCEEEEECCCCSS
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCC---------------CccceeeecccC---CCceEEEEecCCCC
Confidence 478999999999999998311 012456678888 8999999999987
Q ss_pred ---CEEEEeeCCCcEEEEeCCC
Q psy11529 223 ---NKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 223 ---~~l~~~~~dg~i~vwd~~~ 241 (244)
++|++++.|++|++|++++
T Consensus 226 ~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 226 LPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CSCCEEEEEETTCEEEEEECSS
T ss_pred CCCceEEEEcCCCeEEEEEccC
Confidence 7999999999999999875
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-40 Score=251.08 Aligned_cols=202 Identities=17% Similarity=0.268 Sum_probs=176.2
Q ss_pred CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC-eEEEEeCCccEEEEeeeC
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~ 86 (244)
|.+.|++++|+|++++|++|+.|+.|++||+.+ + +.+..+.+|...|.+++|+|++. ++++++.|+.|++|| +
T Consensus 138 h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~--~--~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd--~ 211 (357)
T 4g56_B 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ--K--AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD--T 211 (357)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECC--T
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--C--cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEE--C
Confidence 578999999999999999999999999999987 5 78888999999999999999875 788999999999999 7
Q ss_pred CCCCceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-CEEEE
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-HLLGC 164 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~ 164 (244)
++++.........+...+.+++|+|+ +.+|++++.|+.|++||+++.+. ......|...|++++|+|++ ++|++
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS----AQTSAVHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG----CEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred CCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE----eEEEeccceeEEEEEEcCCCCCEEEE
Confidence 77765555555567788999999997 56789999999999999998875 44556788999999999987 58999
Q ss_pred eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec-CCCEEEEeeCCCcEEEEeCCC
Q psy11529 165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~ 241 (244)
|+.|++|+|||+ .+++.+.. .+| ...|++++|+| ++++|++++.||+|++|++..
T Consensus 288 gs~D~~i~iwd~------------------~~~~~~~~-~~H---~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 288 ISEDCTVAVLDA------------------DFSEVFRD-LSH---RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EETTSCEEEECT------------------TSCEEEEE-CCC---SSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EeCCCEEEEEEC------------------CCCcEeEE-CCC---CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 999999999998 55666554 467 89999999999 899999999999999999865
No 16
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6e-40 Score=250.12 Aligned_cols=204 Identities=10% Similarity=-0.005 Sum_probs=170.3
Q ss_pred CCceEEEEEcCCCCeEEEe--cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 9 INPVTTHAWNNTRQQLAFT--PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~--~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
...+.+++|||||++++++ +.|++|+|||+.+ + +++..+. |...|.+++|+|+|+++++++.+ .+.+|+ .
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~--~--~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~--~ 204 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD--L--TEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVIS--T 204 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT--T--EEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEE--T
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC--C--cEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEE--e
Confidence 3458899999999997654 4789999999987 4 5666665 78889999999999999999855 566777 5
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC----eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR----LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL 162 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 162 (244)
.++..........|...+.+++|+|+++++++++.|+ .+++|++...............|...|++++|+|+|++|
T Consensus 205 ~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 205 VTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELA 284 (365)
T ss_dssp TTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEE
T ss_pred ccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCce
Confidence 6666544444456788899999999999999998877 678888877654333344566788899999999999999
Q ss_pred EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe-cCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL-NNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
|+|+.|++|+|||+ .+++++..+ .+| ...|++++|+|||++|+++|.|++|+|||+..
T Consensus 285 asgs~D~~V~iwd~------------------~~~~~~~~~~~gH---~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 285 VLASNDNSIALVKL------------------KDLSMSKIFKQAH---SFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEETTSCEEEEET------------------TTTEEEEEETTSS---SSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEcCCCEEEEEEC------------------CCCcEEEEecCcc---cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999999 678888875 678 99999999999999999999999999999964
No 17
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4e-39 Score=243.97 Aligned_cols=224 Identities=22% Similarity=0.355 Sum_probs=183.0
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
.|.+.|.+++|+|++++|++|+.|+.+++|++.. +..+....+.+|...|.+++|+|++++|++++.|++|++|| +
T Consensus 59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~--~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd--~ 134 (345)
T 3fm0_A 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ--DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE--V 134 (345)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC--C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE--E
T ss_pred ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC--CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEE--C
Confidence 3678999999999999999999999999999977 44467788999999999999999999999999999999999 5
Q ss_pred CCCC-ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 87 DDKK-WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
..+. ......+..|...|.+++|+|++++|++++.|+.|++||.+.... .......+|...|.+++|+|++++|+++
T Consensus 135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~--~~~~~~~~h~~~v~~l~~sp~g~~l~s~ 212 (345)
T 3fm0_A 135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW--VCCATLEGHESTVWSLAFDPSGQRLASC 212 (345)
T ss_dssp CTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE--EEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 5443 233445567889999999999999999999999999999987643 3345667889999999999999999999
Q ss_pred eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
+.|++|++||.+........ .........+++..+.+.+ ...|.+++|+|++..|++++.|+.|++|+.+.
T Consensus 213 s~D~~v~iW~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 213 SDDRTVRIWRQYLPGNEQGV---ACSGSDPSWKCICTLSGFH--SRTIYDIAWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp ETTSCEEEEEEECTTCTTCC---CCC---CEEEEEEEECSSC--SSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred eCCCeEEEeccccCCCCccc---eeeccCCccceeEEecCCC--CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence 99999999997533211100 0001112335566666632 88999999999999999999999999999764
No 18
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.8e-39 Score=245.42 Aligned_cols=201 Identities=17% Similarity=0.257 Sum_probs=176.0
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN 85 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 85 (244)
..|.+.|.++.|++++. +++++.|+.|++||+.. + +....+.+|...|.+++|+|+++++++|+.|+.|++||
T Consensus 140 ~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd-- 212 (340)
T 1got_B 140 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIET--G--QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD-- 212 (340)
T ss_dssp ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE--
T ss_pred cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCC--C--cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE--
Confidence 34678999999998875 88889999999999987 5 77888999999999999999999999999999999999
Q ss_pred CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
+.++.. ...+..|...|.+++|+|++++|++++.|+.|++||++..+. ........+...+.+++|+|+|++|++|
T Consensus 213 ~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~g 288 (340)
T 1got_B 213 VREGMC--RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAG 288 (340)
T ss_dssp TTTCSE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred CCCCee--EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE--EEEEccCCcccceEEEEECCCCCEEEEE
Confidence 777664 344567899999999999999999999999999999988754 1111122334579999999999999999
Q ss_pred eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529 166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM 238 (244)
Q Consensus 166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 238 (244)
+.||.|++||+ ..++.+..+.+| ...|.+++|+|+|++|++|+.||.|+|||
T Consensus 289 ~~d~~i~vwd~------------------~~~~~~~~~~~h---~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 289 YDDFNCNVWDA------------------LKADRAGVLAGH---DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ETTSEEEEEET------------------TTCCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCeEEEEEc------------------ccCcEeeEeecC---CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999998 667788889999 99999999999999999999999999997
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.7e-39 Score=239.58 Aligned_cols=205 Identities=16% Similarity=0.278 Sum_probs=181.1
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN 85 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 85 (244)
..|.++|++++|+|++++|++++.|+.|++|++.+ + +....+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd-- 93 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--G--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD-- 93 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--C--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE--
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC--c--ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE--
Confidence 34689999999999999999999999999999976 4 66778889999999999999999999999999999999
Q ss_pred CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
+.+++.. ..+..|...+.+++|+|++++|++++.|+.|++||+++.+. ......|...+.+++|+|++++|+++
T Consensus 94 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 94 VSSGKCL--KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp TTTCCEE--EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcEE--EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE----EEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 7777643 44567899999999999999999999999999999988764 45556788899999999999999999
Q ss_pred eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
+.||.|++||+ ..++.+..+..++ ...+..++|+|++++|++++.||.|++||+++.
T Consensus 168 ~~d~~i~~wd~------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 224 (312)
T 4ery_A 168 SYDGLCRIWDT------------------ASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224 (312)
T ss_dssp ETTSCEEEEET------------------TTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred eCCCcEEEEEC------------------CCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999998 5566666654432 678999999999999999999999999999753
No 20
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.7e-39 Score=244.34 Aligned_cols=202 Identities=21% Similarity=0.348 Sum_probs=177.4
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC--CCCeEEEEeCCccEEEEe
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP--NTNRIVTCSADRNAYVWT 83 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd 83 (244)
..|.+.|.+++|+|++..|++++.|++|++||++. + +.+..+.+|...|.+++|+| ++++|++|+.|+.|++||
T Consensus 151 ~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~--~--~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd 226 (354)
T 2pbi_B 151 AMHTNYLSACSFTNSDMQILTASGDGTCALWDVES--G--QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226 (354)
T ss_dssp EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--C--CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEE
T ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC--C--eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 45788999999999999999999999999999987 5 67888999999999999988 578999999999999999
Q ss_pred eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
+++++. ...+..|...|.+++|+|++++|++++.|++|++||++.... ........+...+.+++|+|++++|+
T Consensus 227 --~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~ 300 (354)
T 2pbi_B 227 --MRSGQC--VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE--VAIYSKESIIFGASSVDFSLSGRLLF 300 (354)
T ss_dssp --TTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred --CCCCcE--EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--EEEEcCCCcccceeEEEEeCCCCEEE
Confidence 777764 334567899999999999999999999999999999988753 11111222345789999999999999
Q ss_pred EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529 164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM 238 (244)
Q Consensus 164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 238 (244)
+|+.|+.|++||+ ..++.+..+.+| ...|++++|+|||++|++|+.||+|++|+
T Consensus 301 ~g~~d~~i~vwd~------------------~~~~~~~~l~~h---~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 301 AGYNDYTINVWDV------------------LKGSRVSILFGH---ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEETTSCEEEEET------------------TTCSEEEEECCC---SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCcEEEEEC------------------CCCceEEEEECC---CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999998 667888889898 99999999999999999999999999996
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.2e-39 Score=240.10 Aligned_cols=208 Identities=13% Similarity=0.095 Sum_probs=180.7
Q ss_pred EEeCCCceEEEEEcCCC-CeEEEecCCCeEEEeeeccCCCc-ceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529 5 YSFGINPVTTHAWNNTR-QQLAFTPNNQEVHLYQYEKAAND-WSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW 82 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 82 (244)
+..|.++|.+++|+|++ ++|++|+.|++|++|++...... ..++..+.+|...|.+++|+|++++|++++.|++|++|
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 34579999999999965 89999999999999998642111 13567889999999999999999999999999999999
Q ss_pred eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC----
Q psy11529 83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN---- 158 (244)
Q Consensus 83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---- 158 (244)
| +.+++. ...+.+|...|.+++|+|++.+|++++.|++|++||++.. .......|...+.++.|+|.
T Consensus 93 d--~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 93 D--VATGET--YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp E--TTTTEE--EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-----EEEEECCCSSCEEEEEECCC----
T ss_pred E--CCCCCe--eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----eEEEEeccCCcEEEEEEccCCCCC
Confidence 9 777764 3445689999999999999999999999999999998754 24556778899999999985
Q ss_pred --CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEE
Q psy11529 159 --NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236 (244)
Q Consensus 159 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 236 (244)
+..+++++.|+.|++||+ ...+....+.+| ...|.+++|+|+|++|++++.||.|++
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~------------------~~~~~~~~~~~h---~~~v~~~~~sp~g~~l~s~~~dg~i~i 222 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNL------------------NQFQIEADFIGH---NSNINTLTASPDGTLIASAGKDGEIML 222 (319)
T ss_dssp --CCEEEEEETTSCEEEEET------------------TTTEEEEEECCC---CSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred CCccEEEEEeCCCEEEEEEC------------------CcchhheeecCC---CCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 448999999999999999 567778888888 999999999999999999999999999
Q ss_pred EeCCCC
Q psy11529 237 RMSQQV 242 (244)
Q Consensus 237 wd~~~~ 242 (244)
||+++.
T Consensus 223 wd~~~~ 228 (319)
T 3frx_A 223 WNLAAK 228 (319)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 999764
No 22
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-38 Score=236.50 Aligned_cols=214 Identities=17% Similarity=0.286 Sum_probs=176.0
Q ss_pred EEeCCCceEEEEEcCC--CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC--CCeEEEEeCCccEE
Q psy11529 5 YSFGINPVTTHAWNNT--RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN--TNRIVTCSADRNAY 80 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~ 80 (244)
+..|.++|.+++|+|+ +++|++|+.|++|++||+.. +....+..+.+|...|.+++|+|+ +.+|++++.|+.|+
T Consensus 49 l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~--~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~ 126 (297)
T 2pm7_B 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN--GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126 (297)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS--SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC--CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEE
Confidence 3457899999999864 89999999999999999987 444566778889999999999997 88999999999999
Q ss_pred EEeeeCCCCCceeeEEEeccCcceEEEEECCC-------------CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC
Q psy11529 81 VWTQNNDDKKWKPTLVLLRINRAATCVKWSPL-------------ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK 147 (244)
Q Consensus 81 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 147 (244)
+|| +.++.......+..|...+.+++|+|+ +++|++++.|+.|++||++..............|.
T Consensus 127 ~wd--~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~ 204 (297)
T 2pm7_B 127 VVE--FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 204 (297)
T ss_dssp EEE--BCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred EEE--ecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC
Confidence 999 555432223455788999999999997 47899999999999999998765344455677899
Q ss_pred CceeEEEecCCC---CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe--cCCCCCCCCeEEEEEecCC
Q psy11529 148 STITCLDWHPNN---HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL--NNSSSGGGWIHSVAFSKDG 222 (244)
Q Consensus 148 ~~v~~~~~~p~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~ 222 (244)
..|.+++|+|++ ++|++++.|++|++||++.... ......+ ..| ...|.+++|+|+|
T Consensus 205 ~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~---------------~~~~~~~~~~~~---~~~v~~~~~s~~g 266 (297)
T 2pm7_B 205 DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG---------------PWKKTLLKEEKF---PDVLWRASWSLSG 266 (297)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS---------------CCEEEESSSSCC---SSCEEEEEECSSS
T ss_pred CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC---------------ccceeeeecccC---CCcEEEEEECCCC
Confidence 999999999985 7999999999999999842110 0011222 345 7889999999999
Q ss_pred CEEEEeeCCCcEEEEeCC
Q psy11529 223 NKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 223 ~~l~~~~~dg~i~vwd~~ 240 (244)
++|++++.||.|++|+..
T Consensus 267 ~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 267 NVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCEEEEETTSCEEEEEEC
T ss_pred CEEEEEcCCCcEEEEEEC
Confidence 999999999999999976
No 23
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.7e-39 Score=242.17 Aligned_cols=236 Identities=19% Similarity=0.266 Sum_probs=186.5
Q ss_pred ceeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC--CCCeEEEEeCCccE
Q psy11529 2 AEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP--NTNRIVTCSADRNA 79 (244)
Q Consensus 2 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i 79 (244)
..+...|.+.|++++|+|++++|++|+.||.|++|++.......+....+.+|...|.+++|+| ++++|++++.|+.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3566778999999999999999999999999999999863333456778889999999999999 69999999999999
Q ss_pred EEEeeeCCCCCc-------eeeEEEeccCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCce-------------
Q psy11529 80 YVWTQNNDDKKW-------KPTLVLLRINRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWW------------- 137 (244)
Q Consensus 80 ~iwd~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~------------- 137 (244)
++|| +.++.. .....+..|...+.+++|+|+ +++|++++.|+.|++||+++.+...
T Consensus 84 ~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 84 KLWE--EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp EEEE--ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred EEEe--cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 9999 555421 334556678999999999999 9999999999999999987654210
Q ss_pred -------------------------------------------EEEeeecCCCCceeEEEecCCC----CEEEEeeCCCe
Q psy11529 138 -------------------------------------------VAKHIKKPIKSTITCLDWHPNN----HLLGCGSTDFK 170 (244)
Q Consensus 138 -------------------------------------------~~~~~~~~~~~~v~~~~~~p~~----~~l~~~~~dg~ 170 (244)
........|...|++++|+|++ ++|++++.||.
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence 1123344678899999999998 89999999999
Q ss_pred EEEEEeeecccccCCCCCC----------------------------CCccccccceeEEecCCCCCCCCeEEEEEecCC
Q psy11529 171 VRVFSAYIKDIESAPQSTN----------------------------WGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG 222 (244)
Q Consensus 171 i~i~d~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 222 (244)
|++||++............ ........+.+..+.+| ...|++++|+|++
T Consensus 242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~s~~~ 318 (351)
T 3f3f_A 242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH---NGEVWSVSWNLTG 318 (351)
T ss_dssp EEEEEEEECC---------------------------------------CCSEEEEEEEEECTT---SSCEEEEEECSSS
T ss_pred EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc---cccEEEEEEcCCC
Confidence 9999997542211100000 00011234667778888 8999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCC
Q psy11529 223 NKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 223 ~~l~~~~~dg~i~vwd~~~~ 242 (244)
++|++++.||.|++||+++.
T Consensus 319 ~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 319 TILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp CCEEEEETTSCEEEEEECTT
T ss_pred CEEEEecCCCcEEEEecCcC
Confidence 99999999999999999853
No 24
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-38 Score=239.13 Aligned_cols=224 Identities=15% Similarity=0.152 Sum_probs=176.9
Q ss_pred EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529 5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 84 (244)
+..|...|.+++|+|++++|++|+.|++|++||+.+ + +....+.+|...|.+++|+|++.+|++++.|++|++||
T Consensus 61 ~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd- 135 (319)
T 3frx_A 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--G--ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT- 135 (319)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--T--EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE-
T ss_pred EeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC--C--CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE-
Confidence 345789999999999999999999999999999987 5 77888999999999999999999999999999999999
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECCC------CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSPL------ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN 158 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 158 (244)
++.. ....+.+|...+.+++|+|. +..+++++.|+.|++||++..+. ......|...|.+++|+|+
T Consensus 136 -~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~sp~ 207 (319)
T 3frx_A 136 -IKGQ---CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI----EADFIGHNSNINTLTASPD 207 (319)
T ss_dssp -TTSC---EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE----EEEECCCCSCEEEEEECTT
T ss_pred -CCCC---eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh----heeecCCCCcEEEEEEcCC
Confidence 5533 24455788999999999995 44899999999999999987653 4556788999999999999
Q ss_pred CCEEEEeeCCCeEEEEEeeecccccCCCCCC------CCc----------------cccccceeEEecCCC-----CCCC
Q psy11529 159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTN------WGS----------------KSTLGNCLVELNNSS-----SGGG 211 (244)
Q Consensus 159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~----------------~~~~~~~~~~~~~~~-----~~~~ 211 (244)
+++|++++.||.|++||++............ +.. .......+..+..+. ....
T Consensus 208 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (319)
T 3frx_A 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287 (319)
T ss_dssp SSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCC
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCc
Confidence 9999999999999999986543221100000 000 000111122222110 0145
Q ss_pred CeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 212 WIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 212 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
.+.+++|+|||++|++|+.||.|++||+.+
T Consensus 288 ~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 288 HAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 688999999999999999999999999875
No 25
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.6e-38 Score=241.38 Aligned_cols=206 Identities=14% Similarity=0.164 Sum_probs=181.7
Q ss_pred EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529 5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 84 (244)
+..|.++|.+++|+|++++|++|+.|+.|+|||... + +....+..|...|.+++|+|++.++++++.|+.+++|++
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~--~--~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT--T--NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--C--CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC--C--CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 445799999999999999999999999999999876 4 566677788999999999999999999999999999994
Q ss_pred eCCCC----CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC--C
Q psy11529 85 NNDDK----KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP--N 158 (244)
Q Consensus 85 ~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~ 158 (244)
... .......+..|...+.+++|+|++..|++++.|++|++||+++++. ......|...+.+++|+| +
T Consensus 136 --~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 136 --TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL----LQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp --CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECCCSS
T ss_pred --eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE----EEEEcCCCCCeEEEEEEeCCC
Confidence 322 1223445567999999999999999999999999999999998864 455667888999999988 5
Q ss_pred CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529 159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM 238 (244)
Q Consensus 159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 238 (244)
+++|++|+.||.|++||+ .+++++..+..| ...|.+++|+|++.+|++++.|++|++||
T Consensus 210 g~~l~sgs~Dg~v~~wd~------------------~~~~~~~~~~~h---~~~v~~v~~~p~~~~l~s~s~D~~v~lwd 268 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDM------------------RSGQCVQAFETH---ESDVNSVRYYPSGDAFASGSDDATCRLYD 268 (354)
T ss_dssp CCEEEEEETTSCEEEEET------------------TTCCEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEEC------------------CCCcEEEEecCC---CCCeEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 689999999999999999 678888889988 89999999999999999999999999999
Q ss_pred CCC
Q psy11529 239 SQQ 241 (244)
Q Consensus 239 ~~~ 241 (244)
+++
T Consensus 269 ~~~ 271 (354)
T 2pbi_B 269 LRA 271 (354)
T ss_dssp TTT
T ss_pred CCC
Confidence 875
No 26
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.6e-38 Score=239.38 Aligned_cols=209 Identities=12% Similarity=0.127 Sum_probs=176.6
Q ss_pred EEeCCCceEEEEE-----cC-CCCeEEEecCCCeEEEeeeccCCC---cceeeeeeccCCCceEEEEeCCCCCeEEEEeC
Q psy11529 5 YSFGINPVTTHAW-----NN-TRQQLAFTPNNQEVHLYQYEKAAN---DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA 75 (244)
Q Consensus 5 ~~~~~~~v~~~~~-----~~-~~~~l~~~~~d~~v~v~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 75 (244)
+..|.++|++++| ++ ++++|++|+.|++|++|++..... ...+...+.+|...|.+++|+|++.++++++.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence 4557999999999 77 899999999999999999965210 11456678899999999999999999999999
Q ss_pred CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529 76 DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDW 155 (244)
Q Consensus 76 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 155 (244)
|++|++|| +.+++. ...+.+|...|.+++|+|++++|++++.|+.|++||+..... ........|...+.+++|
T Consensus 97 D~~v~lwd--~~~~~~--~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 97 DKTLRLWD--LRTGTT--YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK--FSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp TSEEEEEE--TTSSCE--EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE--EECCTTTSCSSCEEEEEE
T ss_pred CCcEEEEE--CCCCcE--EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce--eeeecccCCCceeeeeee
Confidence 99999999 777764 344567999999999999999999999999999999974321 111122367788999999
Q ss_pred cCCC----------CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEE
Q psy11529 156 HPNN----------HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKL 225 (244)
Q Consensus 156 ~p~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 225 (244)
+|++ .+|++++.||.|++||. ..+....+..| ...|.+++|+|+|++|
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-------------------~~~~~~~~~~h---~~~v~~~~~s~~g~~l 228 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-------------------NFQIRYTFKAH---ESNVNHLSISPNGKYI 228 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-------------------TTEEEEEEECC---SSCEEEEEECTTSSEE
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEcC-------------------CCceeEEEcCc---cccceEEEECCCCCEE
Confidence 9987 78999999999999994 34566778888 8999999999999999
Q ss_pred EEeeCCCcEEEEeCCC
Q psy11529 226 CWTSHDGSINVRMSQQ 241 (244)
Q Consensus 226 ~~~~~dg~i~vwd~~~ 241 (244)
++|+.||.|++||+.+
T Consensus 229 ~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 229 ATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEEETTCEEEEEESSC
T ss_pred EEEcCCCeEEEEECCC
Confidence 9999999999999943
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=238.96 Aligned_cols=216 Identities=21% Similarity=0.330 Sum_probs=170.4
Q ss_pred CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC---CcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA---NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 84 (244)
|.++|.+++|+|++++|++|+.|+.|+||++.... ........+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd- 135 (330)
T 2hes_X 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE- 135 (330)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE-
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe-
Confidence 67899999999999999999999999999985311 11256678899999999999999999999999999999999
Q ss_pred eCCC-C-CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC--CC
Q psy11529 85 NNDD-K-KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN--NH 160 (244)
Q Consensus 85 ~~~~-~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~ 160 (244)
+.. + .......+.+|...|.+++|+|++++|++++.|++|++||...... .......+|...|.+++|+|+ +.
T Consensus 136 -~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~ 212 (330)
T 2hes_X 136 -TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW--ECVAVLNGHEGTVWSSDFDKTEGVF 212 (330)
T ss_dssp -CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCSSSSC
T ss_pred -ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe--eEEEEccCCCCcEEEEEecCCCCee
Confidence 532 2 2233445678899999999999999999999999999999887632 345566789999999999998 67
Q ss_pred EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC-CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529 161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN-SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS 239 (244)
Q Consensus 161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 239 (244)
+|++++.|++|++||++...... .....+...+.. | ...|.+++|++++ +|++++.||.|++||+
T Consensus 213 ~l~s~s~D~~v~iw~~~~~~~~~----------~~~~~~~~~~~~~h---~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 213 RLCSGSDDSTVRVWKYMGDDEDD----------QQEWVCEAILPDVH---KRQVYNVAWGFNG-LIASVGADGVLAVYEE 278 (330)
T ss_dssp EEEEEETTSCEEEEEEEEECTTS----------CEEEEEEEECCSCC---SSCEEEEEECTTS-CEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCccc----------cceeEEeeeccccc---ccceEEEEEcCCC-EEEEEeCCCEEEEEEc
Confidence 89999999999999996432110 011134445554 5 8899999999765 8999999999999997
Q ss_pred CC
Q psy11529 240 QQ 241 (244)
Q Consensus 240 ~~ 241 (244)
.+
T Consensus 279 ~~ 280 (330)
T 2hes_X 279 VD 280 (330)
T ss_dssp ET
T ss_pred CC
Confidence 54
No 28
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-38 Score=242.50 Aligned_cols=218 Identities=17% Similarity=0.323 Sum_probs=187.6
Q ss_pred ceeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC--CCeEEEEeCCccE
Q psy11529 2 AEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN--TNRIVTCSADRNA 79 (244)
Q Consensus 2 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i 79 (244)
...+..|.++|++++|+|++++|++|+.||.|+||++.. ...+....+.+|...|.+++|+|+ +++|++++.|+.|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG--ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCC--CcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 456778999999999999999999999999999999975 333777889999999999999987 8999999999999
Q ss_pred EEEeeeCCCCCceeeEEEeccCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529 80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP 157 (244)
Q Consensus 80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 157 (244)
++|| +.+++.........|...+.+++|+|+ +.+|++++.|+.|++||++.... ........|...+.+++|+|
T Consensus 82 ~iwd--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 82 LIWK--EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASWAP 157 (379)
T ss_dssp EEEE--EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC--CCEEEEECCTTCEEEEEECC
T ss_pred EEEE--cCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc--eeeEEecCCCCceEEEEEcC
Confidence 9999 667665456666778999999999999 99999999999999999998754 12334567788999999999
Q ss_pred -------------CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC---
Q psy11529 158 -------------NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD--- 221 (244)
Q Consensus 158 -------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--- 221 (244)
++++|++++.||.|++||++... ........+..| ...|.+++|+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~h---~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------------QTYVLESTLEGH---SDWVRDVAWSPTVLL 220 (379)
T ss_dssp CC----------CTTCEEEEEETTSCEEEEEEETTT--------------TEEEEEEEECCC---SSCEEEEEECCCCSS
T ss_pred ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--------------cceeeEEEEecc---cCcEeEEEECCCCCC
Confidence 68999999999999999995332 123456677888 899999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCC
Q psy11529 222 GNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 222 ~~~l~~~~~dg~i~vwd~~~~ 242 (244)
+++|++++.||.|++||+++.
T Consensus 221 ~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 221 RSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp SEEEEEEETTSCEEEEEESST
T ss_pred CCeEEEEeCCCEEEEEeCCCC
Confidence 899999999999999998863
No 29
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.8e-39 Score=252.01 Aligned_cols=210 Identities=16% Similarity=0.153 Sum_probs=170.2
Q ss_pred EeCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEe
Q psy11529 6 SFGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWT 83 (244)
Q Consensus 6 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd 83 (244)
..|...|+|++|+| ++++||+|+.||.|+|||+.. ++......+.+|.+.|++++|+| ++++|++++.|++|++||
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~--~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGI--KDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSC--CSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCC--CCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 34678899999999 567999999999999999976 43355667788999999999998 789999999999999999
Q ss_pred eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC-EE
Q psy11529 84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH-LL 162 (244)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l 162 (244)
++++..........+...+.+++|+|++++|++|+.|+.|++||++... ......|...|.+++|+|++. ++
T Consensus 194 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-----~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 194 --FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-----LWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp --TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-----CCCSBCCSSCEEEEEECTTCSSEE
T ss_pred --ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-----eEEEecccceEEeeeecCCCceEE
Confidence 6655432222222234567899999999999999999999999987543 245567889999999999886 78
Q ss_pred EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
++++.|+.|++||++.... ...+....+| ...|++++|+|+|++|++++.||.|+|||+++.
T Consensus 267 ~s~s~d~~v~iwd~~~~~~---------------~~~~~~~~~h---~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRG---------------KASFLYSLPH---RHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp EEEETTSBCCEEETTTCCS---------------SSCCSBCCBC---SSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred EEecCcceeeEEecccccc---------------cceEEEeeec---cccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 8999999999999853221 1122223456 889999999999999999999999999999763
No 30
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-37 Score=239.73 Aligned_cols=214 Identities=19% Similarity=0.250 Sum_probs=173.6
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK 90 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 90 (244)
.|.+++|+|+|++|++|+.|+.|++||+.+ + +....+.+|...|.+++|+|++++|++++.|++|++|| +.+++
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~--~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd--~~~~~ 198 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIEN--R--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD--LRTGQ 198 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE--TTTTE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCC--C--cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE--CCCCe
Confidence 499999999999999999999999999987 5 67788999999999999999999999999999999999 77776
Q ss_pred ceeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEE---eeecCCCCceeEEEecCCCCEEEEee
Q psy11529 91 WKPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAK---HIKKPIKSTITCLDWHPNNHLLGCGS 166 (244)
Q Consensus 91 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~l~~~~ 166 (244)
.... ..+...+.+++|+| ++++|++++.|+.|++||++++....... .....|...|.+++|+|++++|++++
T Consensus 199 ~~~~---~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 199 CSLT---LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp EEEE---EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEE---EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence 4332 23667899999999 89999999999999999998876411111 11246788999999999999999999
Q ss_pred CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
.|+.|++||++......... ....+.+...+.+| ...|.+++|+|++++|++|+.|+.|++||+++.
T Consensus 276 ~d~~v~~wd~~~~~~~~~~~------~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSDSK------TPNSGTCEVTYIGH---KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp TTSEEEEEEC---------------------CEEEEEECC---SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred CCCEEEEEECCCCCCccccc------CCCCCcceEEEecc---cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999996432211000 00224566778888 889999999999999999999999999998764
No 31
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.8e-38 Score=251.76 Aligned_cols=196 Identities=20% Similarity=0.328 Sum_probs=176.0
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN 85 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 85 (244)
..|..+|.+++|+|++++|++++.|+.|++|+... +.+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 382 ~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-----~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~-- 454 (577)
T 2ymu_A 382 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-- 454 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE--
T ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-----CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE--
Confidence 44688999999999999999999999999999766 67788899999999999999999999999999999999
Q ss_pred CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
.. ++. ...+..|...+.+++|+|++++|++++.|+.|++||.. ++ .......|...|++++|+|++++|+++
T Consensus 455 ~~-~~~--~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~----~~~~~~~h~~~v~~l~~s~dg~~l~s~ 526 (577)
T 2ymu_A 455 RN-GQL--LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ----LLQTLTGHSSSVRGVAFSPDGQTIASA 526 (577)
T ss_dssp TT-SCE--EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SC----EEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred CC-CCE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CC----EEEEEeCCCCCEEEEEEcCCCCEEEEE
Confidence 54 332 34456789999999999999999999999999999953 32 345567788999999999999999999
Q ss_pred eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529 166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM 238 (244)
Q Consensus 166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 238 (244)
+.||.|++||. +++++..+.+| ...|++++|+|||++|++++.|++|++||
T Consensus 527 ~~dg~v~lwd~-------------------~~~~~~~~~~h---~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 527 SDDKTVKLWNR-------------------NGQLLQTLTGH---SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ETTSEEEEECT-------------------TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECcCEEEEEeC-------------------CCCEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999995 47788889999 99999999999999999999999999997
No 32
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.4e-38 Score=254.25 Aligned_cols=206 Identities=14% Similarity=0.198 Sum_probs=175.5
Q ss_pred eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC----ccE
Q psy11529 4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD----RNA 79 (244)
Q Consensus 4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i 79 (244)
.+..|.+.|++++|+|+|++||+|+.|++|+|||+.. +.......+.+|.+.|.+++|+|++++|++++.+ +.|
T Consensus 54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~--~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v 131 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ--TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 131 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSS--TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCC--CcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence 3455789999999999999999999999999999965 2224556788999999999999999999988765 478
Q ss_pred EEEeeeCCCCCceeeEEEeccCcceEEEEECCCCC-eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC
Q psy11529 80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLEN-KFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN 158 (244)
Q Consensus 80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 158 (244)
++|| . ++.. ..+.+|...|++++|+|++. .|++++.|++|++||.+..+ .......|...|.+++|+|+
T Consensus 132 ~~wd--~--~~~~--~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~----~~~~l~~H~~~V~~v~fspd 201 (611)
T 1nr0_A 132 FLFD--T--GTSN--GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK----FKSTFGEHTKFVHSVRYNPD 201 (611)
T ss_dssp EETT--T--CCBC--BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE----EEEEECCCSSCEEEEEECTT
T ss_pred EEee--C--CCCc--ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe----EeeeeccccCceEEEEECCC
Confidence 8888 3 3222 23467999999999999987 59999999999999977654 34566789999999999999
Q ss_pred CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec-------CCCCCCCCeEEEEEecCCCEEEEeeCC
Q psy11529 159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN-------NSSSGGGWIHSVAFSKDGNKLCWTSHD 231 (244)
Q Consensus 159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~~~d 231 (244)
|++|++++.|++|++||+ ..++.+..+. +| ...|.+++|+|+|++|++++.|
T Consensus 202 g~~las~s~D~~i~lwd~------------------~~g~~~~~~~~~~~~~~~h---~~~V~~v~~spdg~~l~s~s~D 260 (611)
T 1nr0_A 202 GSLFASTGGDGTIVLYNG------------------VDGTKTGVFEDDSLKNVAH---SGSVFGLTWSPDGTKIASASAD 260 (611)
T ss_dssp SSEEEEEETTSCEEEEET------------------TTCCEEEECBCTTSSSCSS---SSCEEEEEECTTSSEEEEEETT
T ss_pred CCEEEEEECCCcEEEEEC------------------CCCcEeeeecccccccccc---CCCEEEEEECCCCCEEEEEeCC
Confidence 999999999999999998 5566666663 57 8999999999999999999999
Q ss_pred CcEEEEeCCCC
Q psy11529 232 GSINVRMSQQV 242 (244)
Q Consensus 232 g~i~vwd~~~~ 242 (244)
++|++||+++.
T Consensus 261 ~~v~lWd~~~~ 271 (611)
T 1nr0_A 261 KTIKIWNVATL 271 (611)
T ss_dssp SEEEEEETTTT
T ss_pred CeEEEEeCCCC
Confidence 99999999753
No 33
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.3e-39 Score=245.91 Aligned_cols=211 Identities=16% Similarity=0.204 Sum_probs=179.1
Q ss_pred EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529 5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 84 (244)
+..|.++|++++|+|++++|++|+.|++|+|||+.+ + +....+..|...|.+++|+|++++|++|+.|+.+++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~--~--~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~- 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT--S--QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN- 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT--T--EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE-
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C--ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE-
Confidence 345789999999999999999999999999999977 4 67788999999999999999999999999999999999
Q ss_pred eCCCC-----CceeeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEE-eeecCCCCceeEEEecC
Q psy11529 85 NNDDK-----KWKPTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAK-HIKKPIKSTITCLDWHP 157 (244)
Q Consensus 85 ~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~~p 157 (244)
+.+. .......+.+|...+.++.|+|+ +..|++++.|++|++||+++++...... .....|...+.+++|+|
T Consensus 137 -~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 -LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp -CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred -CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 4432 11222345678899999999997 4579999999999999999887521111 11256788999999987
Q ss_pred -CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEE
Q psy11529 158 -NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236 (244)
Q Consensus 158 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 236 (244)
++++|++|+.|+.|++||++ ...+.+..+.+| ...|.+++|+|++++|++++.||+|++
T Consensus 216 ~~~~~l~sgs~D~~v~~wd~~-----------------~~~~~~~~~~~h---~~~v~~v~~~p~~~~l~s~s~D~~i~l 275 (380)
T 3iz6_a 216 LNANMFISGSCDTTVRLWDLR-----------------ITSRAVRTYHGH---EGDINSVKFFPDGQRFGTGSDDGTCRL 275 (380)
T ss_dssp SSCCEEEEEETTSCEEEEETT-----------------TTCCCCEEECCC---SSCCCEEEECTTSSEEEEECSSSCEEE
T ss_pred CCCCEEEEEECCCeEEEEECC-----------------CCCcceEEECCc---CCCeEEEEEecCCCeEEEEcCCCeEEE
Confidence 88999999999999999984 245677788888 999999999999999999999999999
Q ss_pred EeCCC
Q psy11529 237 RMSQQ 241 (244)
Q Consensus 237 wd~~~ 241 (244)
||+++
T Consensus 276 wd~~~ 280 (380)
T 3iz6_a 276 FDMRT 280 (380)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99975
No 34
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.7e-38 Score=237.58 Aligned_cols=208 Identities=16% Similarity=0.149 Sum_probs=167.2
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
.|...|.+++|+|+++++ +++.||.|+|||+.+............+|...|.+++|+|++++|++++.|+.|++|| .
T Consensus 92 ~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd--~ 168 (357)
T 4g56_B 92 QTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD--L 168 (357)
T ss_dssp ECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE--T
T ss_pred CCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE--C
Confidence 357889999999998655 5677999999999762111112233457999999999999999999999999999999 7
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCC-eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC-CEEEE
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLEN-KFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-HLLGC 164 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~ 164 (244)
.+++. ...+..|...|++++|+|++. ++++++.|+.|++||+++.+. ........+...+.+++|+|++ .+|++
T Consensus 169 ~~~~~--~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~~la~ 244 (357)
T 4g56_B 169 SQKAV--LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP--ATRIDFCASDTIPTSVTWHPEKDDTFAC 244 (357)
T ss_dssp TTTEE--EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC--BCBCCCTTCCSCEEEEEECTTSTTEEEE
T ss_pred CCCcE--EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce--eeeeeeccccccccchhhhhcccceEEE
Confidence 77664 344567899999999999874 789999999999999988765 1222334566789999999975 68999
Q ss_pred eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC-CEEEEeeCCCcEEEEeCCCC
Q psy11529 165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG-NKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~ 242 (244)
|+.|+.|++||+ ..++.+..+..| ...|++++|+|++ ++|++++.|++|+|||+++.
T Consensus 245 g~~d~~i~~wd~------------------~~~~~~~~~~~~---~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 245 GDETGNVSLVNI------------------KNPDSAQTSAVH---SQNITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp EESSSCEEEEES------------------SCGGGCEEECCC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred eecccceeEEEC------------------CCCcEeEEEecc---ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 999999999999 667788888888 8999999999987 58999999999999998763
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.2e-37 Score=237.45 Aligned_cols=211 Identities=17% Similarity=0.151 Sum_probs=176.1
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEee
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~ 84 (244)
..|...|.+++|+|++++|++++.|+.|++||+.+ + +....+. +...+.+++|+| ++++|++++.|+.|++||
T Consensus 162 ~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~--~--~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd- 235 (393)
T 1erj_A 162 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT--G--QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD- 235 (393)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--T--EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEE-
T ss_pred ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC--C--eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEE-
Confidence 44688999999999999999999999999999987 4 5555555 677899999999 899999999999999999
Q ss_pred eCCCCCceeeEE-----EeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCc--------eEEEeeecCCCCcee
Q psy11529 85 NNDDKKWKPTLV-----LLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDW--------WVAKHIKKPIKSTIT 151 (244)
Q Consensus 85 ~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--------~~~~~~~~~~~~~v~ 151 (244)
..++.....+. ..+|...|.+++|+|++++|++++.|+.|++||++..... ........+|...|.
T Consensus 236 -~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 314 (393)
T 1erj_A 236 -SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 314 (393)
T ss_dssp -TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEE
T ss_pred -CCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEE
Confidence 77776433321 1467889999999999999999999999999999864321 112334567888999
Q ss_pred EEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec------CCCEE
Q psy11529 152 CLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK------DGNKL 225 (244)
Q Consensus 152 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l 225 (244)
+++|+|++++|++|+.|+.|++||+ .+++.+..+.+| ...|.+++|++ ++++|
T Consensus 315 ~~~~~~~~~~l~sgs~D~~v~iwd~------------------~~~~~~~~l~~h---~~~v~~v~~~~~~~~~p~~~~l 373 (393)
T 1erj_A 315 SVATTQNDEYILSGSKDRGVLFWDK------------------KSGNPLLMLQGH---RNSVISVAVANGSSLGPEYNVF 373 (393)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEET------------------TTCCEEEEEECC---SSCEEEEEECSSCTTCTTCEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEC------------------CCCeEEEEECCC---CCCEEEEEecCCcCcCCCCCEE
Confidence 9999999999999999999999998 678888899999 89999999986 68899
Q ss_pred EEeeCCCcEEEEeCCCCCC
Q psy11529 226 CWTSHDGSINVRMSQQVLP 244 (244)
Q Consensus 226 ~~~~~dg~i~vwd~~~~~p 244 (244)
++|+.||+|++|++++..|
T Consensus 374 ~sgs~Dg~i~iW~~~~~~p 392 (393)
T 1erj_A 374 ATGSGDCKARIWKYKKIAP 392 (393)
T ss_dssp EEEETTSEEEEEEEEEC--
T ss_pred EEECCCCcEEECcccccCC
Confidence 9999999999999988765
No 36
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2e-36 Score=226.12 Aligned_cols=222 Identities=16% Similarity=0.191 Sum_probs=183.7
Q ss_pred EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529 5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 84 (244)
+..|..+|.+++|+|++++|++++.|+.|++||+.. + +.+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd- 135 (312)
T 4ery_A 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS--G--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 135 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--C--CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE-
T ss_pred hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC--C--cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE-
Confidence 344688999999999999999999999999999987 4 67788899999999999999999999999999999999
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC 164 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 164 (244)
+++++. ...+..|...+.+++|+|++++|++++.|+.|++||+++.+. .......+...+..++|+|++++|++
T Consensus 136 -~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 136 -VKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILA 209 (312)
T ss_dssp -TTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---EEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred -CCCCEE--EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eeEEeccCCCceEEEEECCCCCEEEE
Confidence 777664 344567888999999999999999999999999999988764 33344556678999999999999999
Q ss_pred eeCCCeEEEEEeeecccccC----CC-------------CCC--CCc--------cccccceeEEecCCCCCCCCeEEEE
Q psy11529 165 GSTDFKVRVFSAYIKDIESA----PQ-------------STN--WGS--------KSTLGNCLVELNNSSSGGGWIHSVA 217 (244)
Q Consensus 165 ~~~dg~i~i~d~~~~~~~~~----~~-------------~~~--~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (244)
++.||.|++||++....... .. ... .+. ....++.+..+.+| ...|.+++
T Consensus 210 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~ 286 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH---TDVVISTA 286 (312)
T ss_dssp EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC---SSCEEEEE
T ss_pred EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc---CCcEEEEe
Confidence 99999999999865432110 00 000 000 23456677788888 89999999
Q ss_pred EecCCCEEEEee--CCCcEEEEeCC
Q psy11529 218 FSKDGNKLCWTS--HDGSINVRMSQ 240 (244)
Q Consensus 218 ~s~~~~~l~~~~--~dg~i~vwd~~ 240 (244)
|+|++++|++++ .|+.|++|+.+
T Consensus 287 ~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 287 CHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ecCcCCceEEEEccCCccEEEecCC
Confidence 999999999987 69999999865
No 37
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.4e-37 Score=232.77 Aligned_cols=213 Identities=19% Similarity=0.289 Sum_probs=171.6
Q ss_pred EeCCCceEEEEEcC--CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC--CCeEEEEeCCccEEE
Q psy11529 6 SFGINPVTTHAWNN--TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN--TNRIVTCSADRNAYV 81 (244)
Q Consensus 6 ~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i 81 (244)
..|.++|.+++|+| ++++|++|+.|++|++||+.. +.+.....+.+|...|.+++|+|+ +.+|++++.|+.|++
T Consensus 54 ~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~--~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l 131 (316)
T 3bg1_A 54 RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN--GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131 (316)
T ss_dssp ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS--SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC--CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence 44789999999986 489999999999999999987 444566778899999999999997 789999999999999
Q ss_pred EeeeCCCCC-ceeeEEEeccCcceEEEEECCC-----------------CCeEEEeeCCCeEEEEEeecCCCceEEEeee
Q psy11529 82 WTQNNDDKK-WKPTLVLLRINRAATCVKWSPL-----------------ENKFAAGSGARLISVCYFESENDWWVAKHIK 143 (244)
Q Consensus 82 wd~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 143 (244)
|| ...+. .........|...+.+++|+|+ +++|++++.|+.|++||++.... +......
T Consensus 132 wd--~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-~~~~~~l 208 (316)
T 3bg1_A 132 LT--YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ-WKEEQKL 208 (316)
T ss_dssp EE--ECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-EEEEECC
T ss_pred Ee--cCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc-cceeeec
Confidence 99 55442 2222233567888999999997 46899999999999999975532 2234456
Q ss_pred cCCCCceeEEEecCCC----CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe
Q psy11529 144 KPIKSTITCLDWHPNN----HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS 219 (244)
Q Consensus 144 ~~~~~~v~~~~~~p~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 219 (244)
..|...|.+++|+|++ ++|++++.|++|++||+..... .......+..| ...|.+++|+
T Consensus 209 ~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~--------------~~~~~~~~~~~---~~~v~~v~~s 271 (316)
T 3bg1_A 209 EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS--------------NTWSPKLLHKF---NDVVWHVSWS 271 (316)
T ss_dssp BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTC--------------CCCBCCEEEEC---SSCEEEEEEC
T ss_pred ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccc--------------cchhhhhhhcC---CCcEEEEEEc
Confidence 7888999999999986 7899999999999999842110 00111233456 7899999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCC
Q psy11529 220 KDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 220 ~~~~~l~~~~~dg~i~vwd~~ 240 (244)
|++++|++++.|+.|++|+..
T Consensus 272 p~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 272 ITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCEEEEEcCCCeEEEEEEC
Confidence 999999999999999999975
No 38
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-36 Score=229.57 Aligned_cols=215 Identities=18% Similarity=0.304 Sum_probs=182.1
Q ss_pred EeCCCceEEEEEcCC--CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC--CCeEEEEeCCccEEE
Q psy11529 6 SFGINPVTTHAWNNT--RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN--TNRIVTCSADRNAYV 81 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i 81 (244)
..|.++|++++|+|+ +++|++++.||.|++||+.. +.......+..|...|.+++|+|+ +.+|++++.|+.|++
T Consensus 52 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v 129 (379)
T 3jrp_A 52 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN--GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129 (379)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC--CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEE
Confidence 346899999999987 99999999999999999988 544577888889999999999998 999999999999999
Q ss_pred EeeeCCCCCceeeEEEeccCcceEEEEECC-------------CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC
Q psy11529 82 WTQNNDDKKWKPTLVLLRINRAATCVKWSP-------------LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS 148 (244)
Q Consensus 82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 148 (244)
|| +..+..........|...+.+++|+| ++.+|++++.|+.|++||++..............|..
T Consensus 130 ~d--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~ 207 (379)
T 3jrp_A 130 VE--FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 207 (379)
T ss_dssp EE--CCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred Ee--cCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC
Confidence 99 66665555566678999999999999 6999999999999999999988765556667778889
Q ss_pred ceeEEEecCC---CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEE
Q psy11529 149 TITCLDWHPN---NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKL 225 (244)
Q Consensus 149 ~v~~~~~~p~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 225 (244)
.|.+++|+|+ +++|++++.||.|++||++..... ....+.....| ...|.+++|+|++++|
T Consensus 208 ~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~~~---~~~v~~~~~s~~g~~l 271 (379)
T 3jrp_A 208 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP-------------WKKTLLKEEKF---PDVLWRASWSLSGNVL 271 (379)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC-------------CEEEESSSSCC---SSCEEEEEECSSSCCE
T ss_pred cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc-------------ceeeeeccccC---CCcEEEEEEcCCCCEE
Confidence 9999999999 899999999999999999432100 01111222234 7889999999999999
Q ss_pred EEeeCCCcEEEEeCC
Q psy11529 226 CWTSHDGSINVRMSQ 240 (244)
Q Consensus 226 ~~~~~dg~i~vwd~~ 240 (244)
++++.||.|++|+++
T Consensus 272 ~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 272 ALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEEESSSSEEEEEEE
T ss_pred EEecCCCcEEEEeCC
Confidence 999999999999987
No 39
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.1e-37 Score=236.49 Aligned_cols=209 Identities=17% Similarity=0.249 Sum_probs=170.7
Q ss_pred EeCCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCcceeeeee-----ccCCCceEEEEeCC-CCCeEEEEeCCcc
Q psy11529 6 SFGINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-----DGHDLKVTGIDWAP-NTNRIVTCSADRN 78 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 78 (244)
..|.+.|.++.|+|+ +..|++|+.|++|++||+.. + +.+..+ .+|...|.+++|++ ++.+|++|+.|++
T Consensus 154 ~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~--~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~ 229 (380)
T 3iz6_a 154 TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT--G--QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTT 229 (380)
T ss_dssp CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT--C--CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSC
T ss_pred cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC--C--cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCe
Confidence 346788999999997 45799999999999999987 4 444444 67899999999987 8899999999999
Q ss_pred EEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeee---cCCCCceeEEEe
Q psy11529 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK---KPIKSTITCLDW 155 (244)
Q Consensus 79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~ 155 (244)
|++|| ++... .....+.+|...|.+++|+|++++|++++.|++|++||++++.......... ..+...+++++|
T Consensus 230 v~~wd--~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (380)
T 3iz6_a 230 VRLWD--LRITS-RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306 (380)
T ss_dssp EEEEE--TTTTC-CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred EEEEE--CCCCC-cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEE
Confidence 99999 54321 1234557899999999999999999999999999999999876411111100 111235899999
Q ss_pred cCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe----cCCCCCCCCeEEEEEecCCCEEEEeeCC
Q psy11529 156 HPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL----NNSSSGGGWIHSVAFSKDGNKLCWTSHD 231 (244)
Q Consensus 156 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~d 231 (244)
+|+|++|++|+.||.|++||+ ..++.+..+ .+| ...|++++|+|+|++|++|+.|
T Consensus 307 s~~g~~l~~g~~dg~i~vwd~------------------~~~~~~~~~~~~~~~h---~~~v~~l~~s~dg~~l~sgs~D 365 (380)
T 3iz6_a 307 SISGRLLFAGYSNGDCYVWDT------------------LLAEMVLNLGTLQNSH---EGRISCLGLSSDGSALCTGSWD 365 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEET------------------TTCCEEEEECCSCSSC---CCCCCEEEECSSSSEEEEECTT
T ss_pred CCCCCEEEEEECCCCEEEEEC------------------CCCceEEEEecccCCC---CCceEEEEECCCCCEEEEeeCC
Confidence 999999999999999999998 455666555 466 8899999999999999999999
Q ss_pred CcEEEEeCCCC
Q psy11529 232 GSINVRMSQQV 242 (244)
Q Consensus 232 g~i~vwd~~~~ 242 (244)
++|++|++...
T Consensus 366 ~~i~iW~~~~~ 376 (380)
T 3iz6_a 366 KNLKIWAFSGH 376 (380)
T ss_dssp SCEEEEECCSS
T ss_pred CCEEEEecCCC
Confidence 99999999864
No 40
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.8e-36 Score=229.27 Aligned_cols=204 Identities=16% Similarity=0.203 Sum_probs=166.1
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN 85 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 85 (244)
..|...|.+++|+|++.++++|+.|+.|++||+.+ + +....+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 73 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~--~--~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd-- 146 (343)
T 2xzm_R 73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT--G--TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN-- 146 (343)
T ss_dssp CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS--S--CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEE--
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--C--cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEe--
Confidence 34688999999999999999999999999999987 5 67788999999999999999999999999999999999
Q ss_pred CCCCCceeeEEEeccCcceEEEEECCCC----------CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529 86 NDDKKWKPTLVLLRINRAATCVKWSPLE----------NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDW 155 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 155 (244)
+.............|...+.+++|+|++ .+|++++.|+.|++||.+. ........|...|.+++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h~~~v~~~~~ 221 (343)
T 2xzm_R 147 ILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAHESNVNHLSI 221 (343)
T ss_dssp SSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECCSSCEEEEEE
T ss_pred ccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCccccceEEEE
Confidence 5432211111112577889999999986 7899999999999999332 134456678899999999
Q ss_pred cCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEE
Q psy11529 156 HPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSIN 235 (244)
Q Consensus 156 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 235 (244)
+|+|++|++|+.||.|++||++. .......+. + ...|.+++|+|++++++++ .|+.|+
T Consensus 222 s~~g~~l~sgs~dg~v~iwd~~~-----------------~~~~~~~~~-~---~~~v~~v~~sp~~~~la~~-~d~~v~ 279 (343)
T 2xzm_R 222 SPNGKYIATGGKDKKLLIWDILN-----------------LTYPQREFD-A---GSTINQIAFNPKLQWVAVG-TDQGVK 279 (343)
T ss_dssp CTTSSEEEEEETTCEEEEEESSC-----------------CSSCSEEEE-C---SSCEEEEEECSSSCEEEEE-ESSCEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCC-----------------Ccccceeec-C---CCcEEEEEECCCCCEEEEE-CCCCEE
Confidence 99999999999999999999831 122333333 2 5679999999999887655 688899
Q ss_pred EEeCCCC
Q psy11529 236 VRMSQQV 242 (244)
Q Consensus 236 vwd~~~~ 242 (244)
+||+.+.
T Consensus 280 iw~~~~~ 286 (343)
T 2xzm_R 280 IFNLMTQ 286 (343)
T ss_dssp EEESSSC
T ss_pred EEEeCCC
Confidence 9998753
No 41
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-36 Score=249.38 Aligned_cols=213 Identities=16% Similarity=0.168 Sum_probs=180.4
Q ss_pred eEEeCCCceEEEEEcCCC-CeEEEecCCCeEEEeeeccCCCc-ceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529 4 VYSFGINPVTTHAWNNTR-QQLAFTPNNQEVHLYQYEKAAND-WSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV 81 (244)
Q Consensus 4 ~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 81 (244)
....|.+.|++++|+|++ ++|++|+.|+.|++|++...... ......+.+|...|.+++|+|++++|++|+.|+.|++
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v 456 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence 356789999999999875 68999999999999998652111 1345678899999999999999999999999999999
Q ss_pred EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC--
Q psy11529 82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN-- 159 (244)
Q Consensus 82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-- 159 (244)
|| +.++.. ...+.+|...|.+++|+|++++|++++.|++|++||...... .........|...|.+++|+|++
T Consensus 457 wd--~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 457 WD--LAAGVS--TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EE--TTTTEE--EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSS
T ss_pred EE--CCCCcc--eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCc
Confidence 99 777653 344568999999999999999999999999999999765432 11111224677889999999987
Q ss_pred CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529 160 HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS 239 (244)
Q Consensus 160 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 239 (244)
..|++++.|+.|++||+ ...+....+.+| ...|++++|+|++++|++++.||.|++||+
T Consensus 532 ~~l~s~s~d~~v~vwd~------------------~~~~~~~~~~~h---~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~ 590 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNL------------------SNCKLRSTLAGH---TGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590 (694)
T ss_dssp CEEEEEETTSCEEEEET------------------TTCCEEEEECCC---SSCEEEEEECTTSSEEEEEETTSBCEEEET
T ss_pred ceEEEEeCCCeEEEEEC------------------CCCcEEEEEcCC---CCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 58999999999999999 567788889998 899999999999999999999999999999
Q ss_pred CCC
Q psy11529 240 QQV 242 (244)
Q Consensus 240 ~~~ 242 (244)
++.
T Consensus 591 ~~~ 593 (694)
T 3dm0_A 591 AEG 593 (694)
T ss_dssp TTT
T ss_pred CCC
Confidence 753
No 42
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.4e-36 Score=231.81 Aligned_cols=210 Identities=18% Similarity=0.190 Sum_probs=172.5
Q ss_pred EeCCCceEEEEEcCCC-CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEe
Q psy11529 6 SFGINPVTTHAWNNTR-QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWT 83 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd 83 (244)
..|.+.|.+++|+|++ ++|++|+.|+.|+||++.+ +.........+|...|.+++|+| ++++|++++.|+.|++||
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV--QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTS--TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC--cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 3468999999999999 8999999999999999987 43344444457999999999999 789999999999999999
Q ss_pred eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC-EE
Q psy11529 84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH-LL 162 (244)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l 162 (244)
+.+...........+...+.+++|+|++++|++++.|+.|++||++ ++ .......|...|.+++|+|+++ +|
T Consensus 148 --~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~----~~~~~~~h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 148 --FSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH----EIFKEKLHKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp --TTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC----EEEEEECSSSCEEEEEECSSCTTEE
T ss_pred --CCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC----EEEEeccCCCcEEEEEECCCCCCEE
Confidence 6653322111112344789999999999999999999999999994 32 2445567889999999999998 99
Q ss_pred EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec-CCCEEEEeeCCCcEEEEeCCC
Q psy11529 163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~ 241 (244)
++++.|+.|++||++... .....+..+ .| ...|.+++|+| ++++|++++.|+.|++||+++
T Consensus 221 ~s~~~d~~i~iwd~~~~~--------------~~~~~~~~~-~~---~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIK--------------DKNSYIAEM-PH---EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEEETTSEEEEEEGGGCC--------------STTCEEEEE-EC---SSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred EEEeCCCEEEEEeCCCCC--------------cccceEEEe-cC---CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 999999999999995322 114555555 56 89999999999 999999999999999999986
Q ss_pred C
Q psy11529 242 V 242 (244)
Q Consensus 242 ~ 242 (244)
.
T Consensus 283 ~ 283 (383)
T 3ei3_B 283 W 283 (383)
T ss_dssp T
T ss_pred C
Confidence 4
No 43
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.5e-36 Score=244.51 Aligned_cols=220 Identities=17% Similarity=0.289 Sum_probs=176.1
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCC----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC-eEEEEeCCccEE
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNN----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRNAY 80 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 80 (244)
..|.++|.+++|+|++++|++++.+ +.|++||.. .....+.+|...|++++|+|++. .|++++.|++|+
T Consensus 100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~------~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~ 173 (611)
T 1nr0_A 100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG------TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 173 (611)
T ss_dssp ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC------CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC------CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEE
Confidence 4468899999999999999988765 478999853 35567889999999999999987 599999999999
Q ss_pred EEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeec------CCCCceeEEE
Q psy11529 81 VWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKK------PIKSTITCLD 154 (244)
Q Consensus 81 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~~~v~~~~ 154 (244)
+|| ..+++. ...+.+|...|.+++|+|++++|++++.|++|++||+.+++. ...... .|.+.|.+++
T Consensus 174 lwd--~~~~~~--~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~---~~~~~~~~~~~~~h~~~V~~v~ 246 (611)
T 1nr0_A 174 IFE--GPPFKF--KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK---TGVFEDDSLKNVAHSGSVFGLT 246 (611)
T ss_dssp EEE--TTTBEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---EEECBCTTSSSCSSSSCEEEEE
T ss_pred EEE--CCCCeE--eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE---eeeeccccccccccCCCEEEEE
Confidence 999 666543 445678999999999999999999999999999999988764 122212 6889999999
Q ss_pred ecCCCCEEEEeeCCCeEEEEEeeecccccCCCCC-C---------CCc---------------cccccceeEEecCCCCC
Q psy11529 155 WHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQST-N---------WGS---------------KSTLGNCLVELNNSSSG 209 (244)
Q Consensus 155 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~---------~~~---------------~~~~~~~~~~~~~~~~~ 209 (244)
|+|++++|++++.|++|++||++..+........ . +.. ....++....+.+|
T Consensus 247 ~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh--- 323 (611)
T 1nr0_A 247 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH--- 323 (611)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC---
Confidence 9999999999999999999998654322110000 0 000 01123345566788
Q ss_pred CCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 210 GGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 210 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
...|.+++|+|||++|++++.|+.|++||+++
T Consensus 324 ~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 324 NKAITALSSSADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence 89999999999999999999999999999875
No 44
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.9e-36 Score=222.16 Aligned_cols=205 Identities=16% Similarity=0.228 Sum_probs=173.2
Q ss_pred EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEe
Q psy11529 5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWT 83 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd 83 (244)
+..|.+.|.+++|+|++++|++|+.|++|++||+.. + ......+.+|...|.+++|+| ++.+|++|+.|++|++||
T Consensus 93 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~--~-~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd 169 (304)
T 2ynn_A 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN--N-WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG--T-TEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC--C-cchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 345789999999999999999999999999999976 2 145677889999999999999 678999999999999999
Q ss_pred eeCCCCCceeeEEEeccCcceEEEEECC--CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529 84 QNNDDKKWKPTLVLLRINRAATCVKWSP--LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL 161 (244)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 161 (244)
+......... ...+...+..+.|+| ++.+|++++.|++|++||+++++. ......|...|.+++|+|++++
T Consensus 170 --~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~----~~~~~~h~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 170 --LGQSTPNFTL-TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPI 242 (304)
T ss_dssp --TTCSSCSEEE-ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECSSSSE
T ss_pred --CCCCCcccee-ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc----ceeeCCCCCCEEEEEECCCCCE
Confidence 6655533332 235667899999987 678999999999999999988754 5566788899999999999999
Q ss_pred EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC--EEEEeeCCCcEEEEeC
Q psy11529 162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN--KLCWTSHDGSINVRMS 239 (244)
Q Consensus 162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~ 239 (244)
|++|+.||+|++||+ .+++.+..+..| ...+.+++|+|++. ++++|+.| .+.+|++
T Consensus 243 l~s~s~Dg~i~iWd~------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~ 300 (304)
T 2ynn_A 243 IISGSEDGTLKIWNS------------------STYKVEKTLNVG---LERSWCIATHPTGRKNYIASGFDN-GFTVLSL 300 (304)
T ss_dssp EEEEETTSCEEEEET------------------TTCCEEEEECCS---SSSEEEEEECTTCGGGCEEEEETT-EEEEEEC
T ss_pred EEEEcCCCeEEEEEC------------------CCCceeeeccCC---CccEEEEEECCCCCceEEEEecCC-ceEEEEe
Confidence 999999999999998 678888899888 88999999999875 57777654 5777877
Q ss_pred CC
Q psy11529 240 QQ 241 (244)
Q Consensus 240 ~~ 241 (244)
.+
T Consensus 301 ~~ 302 (304)
T 2ynn_A 301 GN 302 (304)
T ss_dssp C-
T ss_pred cc
Confidence 64
No 45
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=251.34 Aligned_cols=219 Identities=18% Similarity=0.328 Sum_probs=184.7
Q ss_pred CceeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC--CCeEEEEeCCcc
Q psy11529 1 MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN--TNRIVTCSADRN 78 (244)
Q Consensus 1 m~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~ 78 (244)
|..+...|.++|++++|+|++++|++|+.||.|+||++.+ +.......+.+|...|.+++|+|+ +++|++|+.||.
T Consensus 1 ~~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~--~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 1 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG--ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp -------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEET--TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred CeeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCC--CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence 3456778999999999999999999999999999999975 334778889999999999999987 999999999999
Q ss_pred EEEEeeeCCCCCceeeEEEeccCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH 156 (244)
Q Consensus 79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 156 (244)
|++|| +.+++.........|...|.+++|+|+ ++.+++++.|+.|++||++.... ........|...|.+++|+
T Consensus 79 I~vwd--~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~--~~~~~~~~~~~~v~~l~~~ 154 (753)
T 3jro_A 79 VLIWK--EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASWA 154 (753)
T ss_dssp EEEEE--EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC--CCCEEEECCSSCEEEEEEC
T ss_pred EEEEE--CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC--cceeEeecCCCceEEEEec
Confidence 99999 666655456666779999999999999 99999999999999999988743 1233446678899999999
Q ss_pred C-------------CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC--
Q psy11529 157 P-------------NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD-- 221 (244)
Q Consensus 157 p-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-- 221 (244)
| +++++++|+.||.|++||++... ........+.+| ...|.+++|+|+
T Consensus 155 p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--------------~~~~~~~~~~~h---~~~V~~l~~sp~~~ 217 (753)
T 3jro_A 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------------QTYVLESTLEGH---SDWVRDVAWSPTVL 217 (753)
T ss_dssp CCC---------CGGGCCEEEEETTSCEEEEEEETTT--------------TEEEEEEEECCC---SSCEEEEEECCCCS
T ss_pred CcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--------------ccceeeeeecCC---CCcEEEEEeccCCC
Confidence 9 58999999999999999995432 223566778888 899999999999
Q ss_pred -CCEEEEeeCCCcEEEEeCCCC
Q psy11529 222 -GNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 222 -~~~l~~~~~dg~i~vwd~~~~ 242 (244)
+++|++++.||.|++||+++.
T Consensus 218 ~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 218 LRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp SSEEEEEEESSSCEEEEEESSS
T ss_pred CCCEEEEEecCCEEEEecCCCC
Confidence 899999999999999999763
No 46
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=225.74 Aligned_cols=208 Identities=19% Similarity=0.180 Sum_probs=180.1
Q ss_pred EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529 5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 84 (244)
+..|.++|++++|+|++++|++++.||.|++|++.+ + +....+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd- 102 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN--G--ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD- 102 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT--C--CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE-
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--c--hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE-
Confidence 445789999999999999999999999999999977 4 67888999999999999999999999999999999999
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC-----CeEEEEEeecCCCceEEE-------eeecCCCC--ce
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-----RLISVCYFESENDWWVAK-------HIKKPIKS--TI 150 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~-------~~~~~~~~--~v 150 (244)
+.+++..... .+...+.+++|+|+++++++++.+ +.+++||++......... .....+.. .+
T Consensus 103 -~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 103 -VSNGQCVATW---KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp -TTTCCEEEEE---ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred -CCCCcEEEEe---ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 7777744433 378899999999999999999998 999999998875422111 11222333 89
Q ss_pred eEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccc-cceeEEecCCCCCCCCeEEEEEecCCCEEEEee
Q psy11529 151 TCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTL-GNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS 229 (244)
Q Consensus 151 ~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 229 (244)
.+++|+|++++|++++.||.|++||+ .. .+.+..+..| ...|.+++|+|++++|++++
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~------------------~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDV------------------SNNYEYVDSIDLH---EKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEET------------------TTTTEEEEEEECC---SSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEEC------------------CCCcEeEEEEecC---CCceeEEEECCCCCEEEEec
Confidence 99999999999999999999999998 44 6777888888 89999999999999999999
Q ss_pred CCCcEEEEeCCCC
Q psy11529 230 HDGSINVRMSQQV 242 (244)
Q Consensus 230 ~dg~i~vwd~~~~ 242 (244)
.||.|++||+++.
T Consensus 238 ~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 238 RDTNSFLVDVSTL 250 (369)
T ss_dssp TTSEEEEEETTTC
T ss_pred CCceEEEEECCCC
Confidence 9999999999864
No 47
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-35 Score=239.51 Aligned_cols=197 Identities=20% Similarity=0.330 Sum_probs=176.4
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
.|..+|.+++|+|++++|++++.|+.|++|+... +.+..+.+|...|.+++|+|++++|++++.|+.|++|| .
T Consensus 342 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~--~ 414 (577)
T 2ymu_A 342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--R 414 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC--T
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEe--C
Confidence 4578999999999999999999999999999766 67888899999999999999999999999999999999 4
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS 166 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 166 (244)
. ++. ...+..|...+.+++|+|++++|++++.|+.|++||.... .......|...|.+++|+|++++|++++
T Consensus 415 ~-~~~--~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~-----~~~~~~~~~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 415 N-GQL--LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ-----LLQTLTGHSSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp T-CCE--EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC-----EEEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred C-CCE--EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC-----EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 3 443 3445678999999999999999999999999999996432 2455567889999999999999999999
Q ss_pred CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529 167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 240 (244)
.|+.|++||. +++++..+.+| ...|++++|+|||++|++++.||.|++||..
T Consensus 487 ~d~~i~iw~~-------------------~~~~~~~~~~h---~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 487 DDKTVKLWNR-------------------NGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp TTSEEEEEET-------------------TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CCCEEEEEcC-------------------CCCEEEEEeCC---CCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 9999999995 47788889998 8999999999999999999999999999964
No 48
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-36 Score=232.04 Aligned_cols=207 Identities=16% Similarity=0.186 Sum_probs=164.8
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCc-ceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAND-WSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN 85 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 85 (244)
.|.++|.+++|+|++++|++++.|+.|++||+.. +. +.....+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 53 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd-- 128 (377)
T 3dwl_C 53 DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP--DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCY-- 128 (377)
T ss_dssp CCSSCEEEEEECTTTCCEEEEETTSSEEEC--------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECC--
T ss_pred cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC--CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEE--
Confidence 4688999999999999999999999999999987 42 346777888999999999999999999999999999999
Q ss_pred CCCCCc-eeeEEEec-cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCC--------------CceEEEeeecCCCCc
Q psy11529 86 NDDKKW-KPTLVLLR-INRAATCVKWSPLENKFAAGSGARLISVCYFESEN--------------DWWVAKHIKKPIKST 149 (244)
Q Consensus 86 ~~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------------~~~~~~~~~~~~~~~ 149 (244)
+.+++. .....+.. |...|.+++|+|++++|++++.|+.|++||++... ......... .|...
T Consensus 129 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 207 (377)
T 3dwl_C 129 FEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW 207 (377)
T ss_dssp C-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS
T ss_pred ECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCce
Confidence 555542 12334445 89999999999999999999999999999996432 111223333 78889
Q ss_pred eeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccce----eEEecCCCCCCCCeEEEEEecCCCEE
Q psy11529 150 ITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC----LVELNNSSSGGGWIHSVAFSKDGNKL 225 (244)
Q Consensus 150 v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l 225 (244)
|.+++|+|++++|++++.||.|++||++ .++. +..+..| ...|.+++|+|++++|
T Consensus 208 v~~~~~sp~~~~l~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l 266 (377)
T 3dwl_C 208 VHAVGFSPSGNALAYAGHDSSVTIAYPS------------------APEQPPRALITVKLS---QLPLRSLLWANESAIV 266 (377)
T ss_dssp EEEEEECTTSSCEEEEETTTEEC-CEEC------------------STTSCEEECCCEECS---SSCEEEEEEEETTEEE
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECC------------------CCCCcceeeEeecCC---CCceEEEEEcCCCCEE
Confidence 9999999999999999999999999994 4444 6777888 8899999999999999
Q ss_pred EEeeCCCcEEEEeCC
Q psy11529 226 CWTSHDGSINVRMSQ 240 (244)
Q Consensus 226 ~~~~~dg~i~vwd~~ 240 (244)
++++.++.+ +|+..
T Consensus 267 ~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 267 AAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEESSSSEE-EECCC
T ss_pred EEEcCCcEE-EEEeC
Confidence 998766655 66654
No 49
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.5e-35 Score=222.34 Aligned_cols=209 Identities=14% Similarity=0.134 Sum_probs=178.9
Q ss_pred EeCCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCC-cceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529 6 SFGINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAAN-DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT 83 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 83 (244)
.-|.+.|++++|+|+ +++|++|+.|++|+|||+..... ...+...+.+|...|.+++|+|++++|++++.|+.|++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 347999999999997 68999999999999999965211 1245677899999999999999999999999999999999
Q ss_pred eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC--CE
Q psy11529 84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN--HL 161 (244)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~ 161 (244)
...... ......+...+..+.+++++++|++++.|+.+++||...... .......|...+..++|++++ .+
T Consensus 115 --~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 115 --LTTGTT--TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK---YTVQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp --TTTTEE--EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE---EEECSSSCSSCEEEEEECSCSSSCE
T ss_pred --ecccce--eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce---EEEEeccccCcccceEEccCCCCcE
Confidence 555543 333456778888999999999999999999999999876643 344556778899999999865 47
Q ss_pred EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
+++++.|+.|++||+ ..++.+..+.+| ...|++++|+|++++|++++.||.|++||+++
T Consensus 188 ~~s~~~d~~i~i~d~------------------~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 188 IVSCGWDKLVKVWNL------------------ANCKLKTNHIGH---TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp EEEEETTSCEEEEET------------------TTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred EEEEcCCCEEEEEEC------------------CCCceeeEecCC---CCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence 889999999999999 677888889998 89999999999999999999999999999986
Q ss_pred C
Q psy11529 242 V 242 (244)
Q Consensus 242 ~ 242 (244)
.
T Consensus 247 ~ 247 (340)
T 4aow_A 247 G 247 (340)
T ss_dssp T
T ss_pred C
Confidence 4
No 50
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.6e-35 Score=224.90 Aligned_cols=210 Identities=13% Similarity=0.108 Sum_probs=176.5
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN 85 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 85 (244)
..|...|.+++|+|++++|++++.|+.|++|++.. ++......+..|...|.+++|+|++++|++++.|+.|++||+
T Consensus 49 ~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~- 125 (372)
T 1k8k_C 49 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG--RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF- 125 (372)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET--TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE-
T ss_pred cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC--CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEe-
Confidence 34689999999999999999999999999999977 533445556779999999999999999999999999999994
Q ss_pred CCCCCc--eeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCC--------------CceEEEeeecCCCCc
Q psy11529 86 NDDKKW--KPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEN--------------DWWVAKHIKKPIKST 149 (244)
Q Consensus 86 ~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------------~~~~~~~~~~~~~~~ 149 (244)
..+.. ........|...+.+++|+|++++|++++.|+.+++||++... ...........|...
T Consensus 126 -~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (372)
T 1k8k_C 126 -EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 204 (372)
T ss_dssp -ETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred -cCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe
Confidence 44432 1122224578899999999999999999999999999975210 001234455578889
Q ss_pred eeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee
Q psy11529 150 ITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS 229 (244)
Q Consensus 150 v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 229 (244)
+.+++|+|++++|++++.||.|++||+ ..++.+..+..| ...+.+++|+|++++|+++
T Consensus 205 v~~~~~~~~~~~l~~~~~d~~i~i~d~------------------~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~- 262 (372)
T 1k8k_C 205 VHGVCFSANGSRVAWVSHDSTVCLADA------------------DKKMAVATLASE---TLPLLAVTFITESSLVAAG- 262 (372)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEEG------------------GGTTEEEEEECS---SCCEEEEEEEETTEEEEEE-
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEC------------------CCCceeEEEccC---CCCeEEEEEecCCCEEEEE-
Confidence 999999999999999999999999999 667888889888 8899999999999988887
Q ss_pred CCCcEEEEeCCC
Q psy11529 230 HDGSINVRMSQQ 241 (244)
Q Consensus 230 ~dg~i~vwd~~~ 241 (244)
.|+.|++|++++
T Consensus 263 ~d~~i~i~~~~~ 274 (372)
T 1k8k_C 263 HDCFPVLFTYDS 274 (372)
T ss_dssp TTSSCEEEEEET
T ss_pred eCCeEEEEEccC
Confidence 899999999876
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.7e-35 Score=219.98 Aligned_cols=206 Identities=14% Similarity=0.126 Sum_probs=175.7
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec--cCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD--GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 84 (244)
.|.++|++++|+|++++|++++ ||.|++|++.... .......+. .|...|.+++|+|++++|++++.|+.|++||
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d- 125 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG-NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD- 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT-CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE-
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC-ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE-
Confidence 3689999999999999999998 9999999997621 112333333 6899999999999999999999999999999
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC 164 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 164 (244)
..+++.........+...+.+++|+|+++++++++.|+.|++||+++.+. ......|...+.+++|+|++++|++
T Consensus 126 -~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 126 -LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL----VRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp -CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred -CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce----eeeeecccCceEEEEECCCCCEEEE
Confidence 67776555566677889999999999999999999999999999988753 4455668889999999999999999
Q ss_pred eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
++.||.|++||+ ..++.+..+. + ...+.+++|+|++++|++++.|+.|++||+++.
T Consensus 201 ~~~dg~i~~~d~------------------~~~~~~~~~~-~---~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~ 256 (337)
T 1gxr_A 201 GGLDNTVRSWDL------------------REGRQLQQHD-F---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp EETTSEEEEEET------------------TTTEEEEEEE-C---SSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred EecCCcEEEEEC------------------CCCceEeeec-C---CCceEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 999999999998 5566666664 3 778999999999999999999999999999764
No 52
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.8e-36 Score=236.20 Aligned_cols=225 Identities=16% Similarity=0.143 Sum_probs=167.0
Q ss_pred CCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 8 GINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 8 ~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
|.++|++++|+| ++++|++|+.|++|++||+++ +..........+...+.+++|+|++++|++|+.||.|++|| +
T Consensus 163 H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd--~ 238 (435)
T 4e54_B 163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG--NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLN--M 238 (435)
T ss_dssp SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS--CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEE--S
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC--CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeec--c
Confidence 689999999998 688999999999999999987 32222222333455688999999999999999999999999 5
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCC-eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLEN-KFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
+... ...+..|...|.+++|+|++. +|++++.|+.|++||++...... ......+|...|++++|+|+|++|+++
T Consensus 239 ~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~spdg~~l~s~ 314 (435)
T 4e54_B 239 DGKE---LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA-SFLYSLPHRHPVNAACFSPDGARLLTT 314 (435)
T ss_dssp SSCB---CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS-CCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred Ccce---eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc-eEEEeeeccccccceeECCCCCeeEEE
Confidence 5433 334467899999999999876 68889999999999998765411 112335678899999999999999999
Q ss_pred eCCCeEEEEEeeecccccCC--------------------CCC-------------CCCc---------cccccceeEEe
Q psy11529 166 STDFKVRVFSAYIKDIESAP--------------------QST-------------NWGS---------KSTLGNCLVEL 203 (244)
Q Consensus 166 ~~dg~i~i~d~~~~~~~~~~--------------------~~~-------------~~~~---------~~~~~~~~~~~ 203 (244)
+.||.|++||++..+..... ... .+.. ...+++.+..+
T Consensus 315 ~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l 394 (435)
T 4e54_B 315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL 394 (435)
T ss_dssp ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence 99999999998654321100 000 0000 12334555555
Q ss_pred cCCCCCCCCeEEE-EEecCCCEEEEeeCCCcEEEEeCCCCC
Q psy11529 204 NNSSSGGGWIHSV-AFSKDGNKLCWTSHDGSINVRMSQQVL 243 (244)
Q Consensus 204 ~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg~i~vwd~~~~~ 243 (244)
..++ ...|.++ +|+|+|++|++|+ |+.|+|||+++-.
T Consensus 395 ~~~~--~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 395 YDPE--SSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp CCSS--CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred eCCC--CCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 4332 6777777 6999999999876 8899999998754
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-36 Score=238.05 Aligned_cols=206 Identities=13% Similarity=0.064 Sum_probs=168.9
Q ss_pred eCCCceEEEEEcCC------CCeEEEecCCCeEEEeeeccCCCc-------ceeeeeeccCCCceEEEEeCCCCCeEEEE
Q psy11529 7 FGINPVTTHAWNNT------RQQLAFTPNNQEVHLYQYEKAAND-------WSQLDVLDGHDLKVTGIDWAPNTNRIVTC 73 (244)
Q Consensus 7 ~~~~~v~~~~~~~~------~~~l~~~~~d~~v~v~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 73 (244)
.+.+.|.+++|+|+ +.+||+++.||+|+||++...... ..+...+.+|...|++++|+++ ..|++|
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasg 283 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCG 283 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEE
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEE
Confidence 35688999999997 579999999999999999762110 0123467889999999999985 489999
Q ss_pred eCCccEEEEeeeCCCCCceeeEEEeccCcceEEE--EECCCC-CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC--C
Q psy11529 74 SADRNAYVWTQNNDDKKWKPTLVLLRINRAATCV--KWSPLE-NKFAAGSGARLISVCYFESENDWWVAKHIKKPIK--S 148 (244)
Q Consensus 74 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~ 148 (244)
+.||+|++|| ++++.. +...+..|...|.++ +|+|++ .+|++++.|++|++||+++.+... ....|. .
T Consensus 284 s~DgtV~lWD--~~~~~~-~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~----~~~~~~~~~ 356 (524)
T 2j04_B 284 FKNGFVAEFD--LTDPEV-PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK----TTVSRFRGS 356 (524)
T ss_dssp ETTSEEEEEE--TTBCSS-CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC----EEEEECSCC
T ss_pred eCCCEEEEEE--CCCCCC-ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc----ccccccccC
Confidence 9999999999 665532 234457899999999 678887 899999999999999998865421 112222 3
Q ss_pred ceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEe
Q psy11529 149 TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT 228 (244)
Q Consensus 149 ~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 228 (244)
.+.+++|+|+++.+++++.|++|++||+ ..+.++..+.+| ...|++++|+|+|++|++|
T Consensus 357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~------------------~~~~~~~~l~gH---~~~V~sva~Sp~g~~l~Sg 415 (524)
T 2j04_B 357 NLVPVVYCPQIYSYIYSDGASSLRAVPS------------------RAAFAVHPLVSR---ETTITAIGVSRLHPMVLAG 415 (524)
T ss_dssp SCCCEEEETTTTEEEEECSSSEEEEEET------------------TCTTCCEEEEEC---SSCEEEEECCSSCCBCEEE
T ss_pred cccceEeCCCcCeEEEeCCCCcEEEEEC------------------cccccceeeecC---CCceEEEEeCCCCCeEEEE
Confidence 5789999999999999999999999999 556677778888 9999999999999999999
Q ss_pred eCCCcEEEEeCCC
Q psy11529 229 SHDGSINVRMSQQ 241 (244)
Q Consensus 229 ~~dg~i~vwd~~~ 241 (244)
+.||+|++||+..
T Consensus 416 s~Dgtv~lwd~~~ 428 (524)
T 2j04_B 416 SADGSLIITNAAR 428 (524)
T ss_dssp ETTTEEECCBSCS
T ss_pred ECCCEEEEEechH
Confidence 9999999999754
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-34 Score=217.60 Aligned_cols=198 Identities=11% Similarity=0.110 Sum_probs=174.6
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
.+...|.+++|+|++++|++++.|+.|++||+.+ + +....+..|...|.+++|+|++++|++++.|+.|++|| +
T Consensus 139 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d--~ 212 (337)
T 1gxr_A 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN--Q--TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD--L 212 (337)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE--T
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--C--ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE--C
Confidence 4578899999999999999999999999999977 4 67788888999999999999999999999999999999 7
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS 166 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 166 (244)
.+++.... ..+...+.+++|+|+++++++++.++.+++||++.... .....|...+.+++|+|++++|++++
T Consensus 213 ~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~ 284 (337)
T 1gxr_A 213 REGRQLQQ---HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLSLKFAYCGKWFVSTG 284 (337)
T ss_dssp TTTEEEEE---EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEee---ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----EEEcCCccceeEEEECCCCCEEEEec
Confidence 77663332 35778899999999999999999999999999988763 34567788999999999999999999
Q ss_pred CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529 167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 240 (244)
.||.|++||+ ..++.+... .| ...+.+++|+|++++|++++.||.|++|++.
T Consensus 285 ~dg~i~~~~~------------------~~~~~~~~~-~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 285 KDNLLNAWRT------------------PYGASIFQS-KE---SSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp TTSEEEEEET------------------TTCCEEEEE-EC---SSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CCCcEEEEEC------------------CCCeEEEEe-cC---CCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 9999999998 555555443 34 7889999999999999999999999999973
No 55
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=232.03 Aligned_cols=210 Identities=15% Similarity=0.245 Sum_probs=166.7
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC-------CcceeeeeeccCC------------CceEEEEeCCCC--
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA-------NDWSQLDVLDGHD------------LKVTGIDWAPNT-- 67 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~-------~~~~~~~~~~~~~------------~~v~~~~~~~~~-- 67 (244)
.+.|++++|+|+|++||+|+.||.|+||++.... ..++....+.+|. ..|.+++|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 5899999999999999999999999999997621 1223577888998 889999999988
Q ss_pred CeEEEEeCCccEEEEeeeCCCCCce-------------------------------------ee-EEEeccCcceEEEEE
Q psy11529 68 NRIVTCSADRNAYVWTQNNDDKKWK-------------------------------------PT-LVLLRINRAATCVKW 109 (244)
Q Consensus 68 ~~l~~~~~d~~i~iwd~~~~~~~~~-------------------------------------~~-~~~~~~~~~v~~~~~ 109 (244)
.+|++++.|+.|++||+ .++... +. ....+|...|.+++|
T Consensus 108 ~~l~s~s~d~~i~iw~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKI--SERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SEEEEEECSSCEEEEEE--EEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred ceEEEeCCCCeEEEEec--ccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 78999999999999994 332210 00 112468899999999
Q ss_pred CCCCCeEEEeeCCCeEEEEEeecCCCceEEEe------eecCCCCceeEEEecCCC-CEEEEeeCCCeEEEEEeeecccc
Q psy11529 110 SPLENKFAAGSGARLISVCYFESENDWWVAKH------IKKPIKSTITCLDWHPNN-HLLGCGSTDFKVRVFSAYIKDIE 182 (244)
Q Consensus 110 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~ 182 (244)
+|++++|+++ .|+.|++||++.... .... ....|...|.+++|+|++ ++|++++.||.|++||++.....
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDR--SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEE--EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCc--eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 9999999998 799999999985432 1111 245678899999999998 99999999999999999432210
Q ss_pred cCCCCCCCCccccccceeEEecCCCCCCC------------CeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 183 SAPQSTNWGSKSTLGNCLVELNNSSSGGG------------WIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
...+..+..| .. .|.+++|+|+|++|++++. +.|++||+++
T Consensus 263 --------------~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 263 --------------DRHSKLFEEP---EDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp --------------CTTCEEECCC--------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred --------------cceeeEeccC---CCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 1115566665 43 8999999999999999998 9999999985
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.7e-36 Score=232.19 Aligned_cols=205 Identities=15% Similarity=0.169 Sum_probs=170.9
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
.|.+.|++++|+|++++|++++.|+.|++||+.. + +....+.+|...|.+++|+|++++|++++.|+.|++|| +
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd--~ 210 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD--G--SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE--C 210 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--C--CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE--T
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC--C--cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE--C
Confidence 4689999999999999999999999999999977 4 66778889999999999999999999999999999999 7
Q ss_pred CCCCceeeEEEe-cc---------------------CcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeec
Q psy11529 87 DDKKWKPTLVLL-RI---------------------NRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKK 144 (244)
Q Consensus 87 ~~~~~~~~~~~~-~~---------------------~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 144 (244)
.+++....+... .+ ...+.+++|+|++++|++++.|+.|++||+++.+. ......
T Consensus 211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~ 287 (420)
T 3vl1_A 211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ---TIQLPS 287 (420)
T ss_dssp TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE---EEEECC
T ss_pred CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce---eEEccc
Confidence 776643333211 12 24455566789999999999999999999988764 344455
Q ss_pred CCCCceeEEEecCCCC-EEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccc-ceeEEecCCCCCCCCeEEEEEecCC
Q psy11529 145 PIKSTITCLDWHPNNH-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLG-NCLVELNNSSSGGGWIHSVAFSKDG 222 (244)
Q Consensus 145 ~~~~~v~~~~~~p~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~ 222 (244)
.|...+.+++|+|+++ +|++++.||.|++||++ .+ .++..+..|+ ...+.++.+ +++
T Consensus 288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~------------------~~~~~~~~~~~~~--~~~v~~~~~-~~~ 346 (420)
T 3vl1_A 288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR------------------SPECPVGEFLINE--GTPINNVYF-AAG 346 (420)
T ss_dssp TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT------------------CTTSCSEEEEEST--TSCEEEEEE-ETT
T ss_pred ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC------------------CCcCchhhhhccC--CCCceEEEe-CCC
Confidence 6788999999999998 99999999999999993 33 3466676643 778888855 588
Q ss_pred CEEEEeeCCCcEEEEeCCC
Q psy11529 223 NKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 223 ~~l~~~~~dg~i~vwd~~~ 241 (244)
++|++++.||.|++|++.+
T Consensus 347 ~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 347 ALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp EEEEEETTTEEEEEEEECC
T ss_pred CEEEEecCCccEEEEeccC
Confidence 8999999999999999876
No 57
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4e-35 Score=227.45 Aligned_cols=204 Identities=10% Similarity=0.090 Sum_probs=168.8
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK 89 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 89 (244)
..+....|+|++++|++++.|+.|++|++.. + +....+.+|...|.+++|+|++++|++++.|+.|++|| +.++
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd--~~~~ 171 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF--N--LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS--VKDG 171 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTS--C--EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEE--TTTC
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCC--c--ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEe--CCCC
Confidence 3445557899999999999999999999987 4 66667789999999999999999999999999999999 7776
Q ss_pred CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC---------------------CCC
Q psy11529 90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP---------------------IKS 148 (244)
Q Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------------------~~~ 148 (244)
+.. ..+..|...|.+++|+|++++|++++.|+.|++||+++++....... ... +..
T Consensus 172 ~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 172 SNP--RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR-KENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp CCC--EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB-TTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred cCc--eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec-CCCCCCCccEEEEecCCcceeeecccC
Confidence 643 34467999999999999999999999999999999988764111110 001 134
Q ss_pred ceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEE
Q psy11529 149 TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCW 227 (244)
Q Consensus 149 ~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~ 227 (244)
.+.+++|+|++++|++++.||.|++||+ ..++....+...+ ...|.+++|+|+++ +|++
T Consensus 249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~------------------~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~ 308 (420)
T 3vl1_A 249 KKNNLEFGTYGKYVIAGHVSGVITVHNV------------------FSKEQTIQLPSKF--TCSCNSLTVDGNNANYIYA 308 (420)
T ss_dssp CCCTTCSSCTTEEEEEEETTSCEEEEET------------------TTCCEEEEECCTT--SSCEEEEEECSSCTTEEEE
T ss_pred cccceEEcCCCCEEEEEcCCCeEEEEEC------------------CCCceeEEccccc--CCCceeEEEeCCCCCEEEE
Confidence 5666777899999999999999999999 5566666554422 78999999999999 9999
Q ss_pred eeCCCcEEEEeCCCC
Q psy11529 228 TSHDGSINVRMSQQV 242 (244)
Q Consensus 228 ~~~dg~i~vwd~~~~ 242 (244)
++.||.|++||+++.
T Consensus 309 g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 309 GYENGMLAQWDLRSP 323 (420)
T ss_dssp EETTSEEEEEETTCT
T ss_pred EeCCCeEEEEEcCCC
Confidence 999999999999864
No 58
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.1e-35 Score=225.39 Aligned_cols=209 Identities=16% Similarity=0.191 Sum_probs=171.1
Q ss_pred EeCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcc-----eeeeeeccCCCceEEEEeCCCC-CeEEEEeCCcc
Q psy11529 6 SFGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDW-----SQLDVLDGHDLKVTGIDWAPNT-NRIVTCSADRN 78 (244)
Q Consensus 6 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~ 78 (244)
..|.++|++++|+| ++++|++|+.||.|+||++.. +.. ..+..+.+|...|.+++|+|++ .+|++++.|+.
T Consensus 78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD--GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT--TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC--CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 34789999999999 999999999999999999977 322 3567788999999999999998 69999999999
Q ss_pred EEEEeeeCCCCCceeeEEE--eccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCc-eeEEEe
Q psy11529 79 AYVWTQNNDDKKWKPTLVL--LRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKST-ITCLDW 155 (244)
Q Consensus 79 i~iwd~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~ 155 (244)
|++|| +.+++. ...+ ..|...+.+++|+|++++|++++.|+.|++||+++++. .......|.+. +.++.|
T Consensus 156 i~iwd--~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~ 228 (402)
T 2aq5_A 156 ILVWD--VGTGAA--VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV---VAEKDRPHEGTRPVHAVF 228 (402)
T ss_dssp EEEEE--TTTTEE--EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE---EEEEECSSCSSSCCEEEE
T ss_pred EEEEE--CCCCCc--cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce---eeeeccCCCCCcceEEEE
Confidence 99999 777653 3344 56889999999999999999999999999999998754 22222556554 899999
Q ss_pred cCCCCEEEEe---eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEecCCCEEEE-eeC
Q psy11529 156 HPNNHLLGCG---STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSKDGNKLCW-TSH 230 (244)
Q Consensus 156 ~p~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~-~~~ 230 (244)
+|++++|++| +.|+.|++||++.. ...+.... .+ ...+.+++|+|++++|++ ++.
T Consensus 229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~-----------------~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~g~~ 288 (402)
T 2aq5_A 229 VSEGKILTTGFSRMSERQVALWDTKHL-----------------EEPLSLQELDT---SSGVLLPFFDPDTNIVYLCGKG 288 (402)
T ss_dssp CSTTEEEEEEECTTCCEEEEEEETTBC-----------------SSCSEEEECCC---CSSCEEEEEETTTTEEEEEETT
T ss_pred cCCCcEEEEeccCCCCceEEEEcCccc-----------------cCCceEEeccC---CCceeEEEEcCCCCEEEEEEcC
Confidence 9999999999 78999999998421 11222222 34 678999999999998865 557
Q ss_pred CCcEEEEeCCCCC
Q psy11529 231 DGSINVRMSQQVL 243 (244)
Q Consensus 231 dg~i~vwd~~~~~ 243 (244)
||.|++||+++..
T Consensus 289 dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 289 DSSIRYFEITSEA 301 (402)
T ss_dssp CSCEEEEEECSST
T ss_pred CCeEEEEEecCCC
Confidence 9999999998653
No 59
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=8.1e-35 Score=238.97 Aligned_cols=204 Identities=18% Similarity=0.219 Sum_probs=174.1
Q ss_pred EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529 5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 84 (244)
...|...|.+++|+|++++|++|+.|+.|+|||+.. + .....+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~--~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd- 500 (694)
T 3dm0_A 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA--G--VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN- 500 (694)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--T--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC-
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--C--cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE-
Confidence 345789999999999999999999999999999977 5 67788999999999999999999999999999999999
Q ss_pred eCCCCCceeeEE--EeccCcceEEEEECCCC--CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529 85 NNDDKKWKPTLV--LLRINRAATCVKWSPLE--NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH 160 (244)
Q Consensus 85 ~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 160 (244)
..... ..... ..+|...|.+++|+|++ ..+++++.|+.|++||++..+. ......|.+.|++++|+|+++
T Consensus 501 -~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~----~~~~~~h~~~v~~v~~spdg~ 574 (694)
T 3dm0_A 501 -TLGEC-KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL----RSTLAGHTGYVSTVAVSPDGS 574 (694)
T ss_dssp -TTSCE-EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSS
T ss_pred -CCCCc-ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE----EEEEcCCCCCEEEEEEeCCCC
Confidence 54332 11111 12477889999999986 5799999999999999988764 556678899999999999999
Q ss_pred EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529 161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 240 (244)
+|++++.||.|++||+ ..++.+..+.. ...+.+++|+|++.+|++++ |+.|++||++
T Consensus 575 ~l~sg~~Dg~i~iwd~------------------~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~ 631 (694)
T 3dm0_A 575 LCASGGKDGVVLLWDL------------------AEGKKLYSLEA----NSVIHALCFSPNRYWLCAAT-EHGIKIWDLE 631 (694)
T ss_dssp EEEEEETTSBCEEEET------------------TTTEEEECCBC----SSCEEEEEECSSSSEEEEEE-TTEEEEEETT
T ss_pred EEEEEeCCCeEEEEEC------------------CCCceEEEecC----CCcEEEEEEcCCCcEEEEEc-CCCEEEEECC
Confidence 9999999999999999 56777776655 56799999999998887765 5679999997
Q ss_pred CC
Q psy11529 241 QV 242 (244)
Q Consensus 241 ~~ 242 (244)
+.
T Consensus 632 ~~ 633 (694)
T 3dm0_A 632 SK 633 (694)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 60
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=223.07 Aligned_cols=207 Identities=14% Similarity=0.189 Sum_probs=172.4
Q ss_pred EEeCCCceEEEEEcCC---CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529 5 YSFGINPVTTHAWNNT---RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV 81 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 81 (244)
+..|.+.|++++|+|+ |++|++|+.||.|++|++.. ........+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD--SGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT--TSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC--CCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 3457899999999999 69999999999999999976 222455788889999999999999999999999999999
Q ss_pred EeeeCCCCCceeeEEEeccCcceEEEEE--CCCCCeEEEeeCCCeEEEEEeecCCCceEEE-------------------
Q psy11529 82 WTQNNDDKKWKPTLVLLRINRAATCVKW--SPLENKFAAGSGARLISVCYFESENDWWVAK------------------- 140 (244)
Q Consensus 82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------------------- 140 (244)
|| +.+++. .....|...+.+++| +|++++|++++.|+.|++||+++.+......
T Consensus 113 wd--~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 3mmy_A 113 WD--LSSNQA---IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVAT 187 (368)
T ss_dssp EE--TTTTEE---EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEE
T ss_pred EE--cCCCCc---eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEe
Confidence 99 777663 334678999999999 9999999999999999999987664311110
Q ss_pred -------------------------------------------------------------------eeecCCCC-----
Q psy11529 141 -------------------------------------------------------------------HIKKPIKS----- 148 (244)
Q Consensus 141 -------------------------------------------------------------------~~~~~~~~----- 148 (244)
.....|..
T Consensus 188 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (368)
T 3mmy_A 188 AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT 267 (368)
T ss_dssp GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence 00011111
Q ss_pred -------ceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC
Q psy11529 149 -------TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD 221 (244)
Q Consensus 149 -------~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 221 (244)
.|++++|+|++++|++++.||.|++||+ ..++++..+..| ...|.+++|+|+
T Consensus 268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~------------------~~~~~~~~~~~~---~~~v~~~~~s~~ 326 (368)
T 3mmy_A 268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK------------------DARTKLKTSEQL---DQPISACCFNHN 326 (368)
T ss_dssp CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET------------------TTTEEEEECCCC---SSCEEEEEECTT
T ss_pred cccccccceEEEEEecCCCEEEEEccCCeEEEEEC------------------CCCcEEEEecCC---CCCceEEEECCC
Confidence 5999999999999999999999999999 678888899988 899999999999
Q ss_pred CCEEEEeeCCCcEEEEeC
Q psy11529 222 GNKLCWTSHDGSINVRMS 239 (244)
Q Consensus 222 ~~~l~~~~~dg~i~vwd~ 239 (244)
|++|++++.|+..+.|++
T Consensus 327 g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 327 GNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp SSCEEEEECCCSTTCGGG
T ss_pred CCeEEEEecccccccccc
Confidence 999999999886555554
No 61
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-34 Score=225.12 Aligned_cols=225 Identities=17% Similarity=0.289 Sum_probs=181.2
Q ss_pred CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND 87 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 87 (244)
|.+.|++++|+|+|++|++|+.||.|+|||+.. + +.+..+.+|...+.+++++ +..|++|+.|+.+++|| ..
T Consensus 146 ~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~--~--~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d--~~ 217 (420)
T 4gga_A 146 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--Q--KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHD--VR 217 (420)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE--TT
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC--C--cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEee--ec
Confidence 367899999999999999999999999999987 5 7888999999999998875 67999999999999999 55
Q ss_pred CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC-EEEE--
Q psy11529 88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH-LLGC-- 164 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~-- 164 (244)
.... ....+..|...+..+.|+|+++++++++.|+.+++|+...++...........+...|.+++|+|++. ++++
T Consensus 218 ~~~~-~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~ 296 (420)
T 4gga_A 218 VAEH-HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 296 (420)
T ss_dssp SSSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE
T ss_pred ccce-eeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe
Confidence 4432 34456789999999999999999999999999999999887653333455667888999999999664 5554
Q ss_pred eeCCCeEEEEEeeecccccCC-------------CCC-C---CC---c-----cccccceeEEecCCCCCCCCeEEEEEe
Q psy11529 165 GSTDFKVRVFSAYIKDIESAP-------------QST-N---WG---S-----KSTLGNCLVELNNSSSGGGWIHSVAFS 219 (244)
Q Consensus 165 ~~~dg~i~i~d~~~~~~~~~~-------------~~~-~---~~---~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s 219 (244)
|+.|+.|++||+++....... ... . .+ . ...+++++..+.+| ...|.+++|+
T Consensus 297 gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH---~~~V~~l~~s 373 (420)
T 4gga_A 297 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH---TSRVLSLTMS 373 (420)
T ss_dssp CTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC---SSCEEEEEEC
T ss_pred ecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC---CCCEEEEEEc
Confidence 457999999998644322110 000 0 00 0 23467788899999 9999999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCCCCCC
Q psy11529 220 KDGNKLCWTSHDGSINVRMSQQVLP 244 (244)
Q Consensus 220 ~~~~~l~~~~~dg~i~vwd~~~~~p 244 (244)
|||++|++|+.|++|+|||+.+..|
T Consensus 374 pdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 374 PDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp TTSSCEEEEETTTEEEEECCSCSSC
T ss_pred CCCCEEEEEecCCeEEEEECCCCCc
Confidence 9999999999999999999976543
No 62
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=214.39 Aligned_cols=209 Identities=19% Similarity=0.329 Sum_probs=171.2
Q ss_pred CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC-------------------------------------Ccceeeee
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA-------------------------------------NDWSQLDV 50 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~-------------------------------------~~~~~~~~ 50 (244)
|...|++++|+|++++|++|+.|+.|++|++++.. ........
T Consensus 66 ~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~ 145 (318)
T 4ggc_A 66 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVAT 145 (318)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEE
Confidence 46789999999999999999999999999986511 00012234
Q ss_pred eccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCc--eeeEEEeccCcceEEEEECCCCCeE---EEeeCCCeE
Q psy11529 51 LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW--KPTLVLLRINRAATCVKWSPLENKF---AAGSGARLI 125 (244)
Q Consensus 51 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~d~~i 125 (244)
+.+|...+..+.+++++++|++++.|+.|++|| ..+++. ........+...+.+++++|++..+ ++++.++.|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i 223 (318)
T 4ggc_A 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP--SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 223 (318)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEE--SSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEE
T ss_pred EcCccCceEEEEEcCCCCEEEEEecCcceeEEE--CCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEE
Confidence 456788899999999999999999999999999 555442 2234445677889999999986543 356678999
Q ss_pred EEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee--CCCeEEEEEeeecccccCCCCCCCCccccccceeEEe
Q psy11529 126 SVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS--TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL 203 (244)
Q Consensus 126 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (244)
++||.+.... .....+...+..+.|+|+++.+++++ .|+.|++||+ .+++++..+
T Consensus 224 ~lwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~------------------~~~~~~~~l 280 (318)
T 4ggc_A 224 RIWNVCSGAC-----LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY------------------PTMAKVAEL 280 (318)
T ss_dssp EEEETTTCCE-----EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET------------------TTCCEEEEE
T ss_pred EEEecccccc-----cccccceeeeeeeeecccccceEEEEEcCCCEEEEEEC------------------CCCcEEEEE
Confidence 9999888764 22334557899999999998877654 7999999999 778899999
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCCC
Q psy11529 204 NNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVLP 244 (244)
Q Consensus 204 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~p 244 (244)
.+| ...|++++|+|||++|++|+.||+|+|||+.++-|
T Consensus 281 ~gH---~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 281 KGH---TSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp CCC---SSCEEEEEECTTSSCEEEEETTTEEEEECCSCCCC
T ss_pred cCC---CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Confidence 999 99999999999999999999999999999999877
No 63
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-35 Score=240.42 Aligned_cols=216 Identities=18% Similarity=0.300 Sum_probs=183.8
Q ss_pred EeCCCceEEEEEcCC--CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC--CCeEEEEeCCccEEE
Q psy11529 6 SFGINPVTTHAWNNT--RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN--TNRIVTCSADRNAYV 81 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i 81 (244)
..|.++|++++|+|+ +++|++|+.||.|++||+.+ +.......+.+|...|.+++|+|+ ++++++++.||.|++
T Consensus 50 ~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~v 127 (753)
T 3jro_A 50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN--GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127 (753)
T ss_dssp CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC--CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEE
Confidence 346899999999998 99999999999999999988 544578888899999999999998 999999999999999
Q ss_pred EeeeCCCCCceeeEEEeccCcceEEEEECC-------------CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC
Q psy11529 82 WTQNNDDKKWKPTLVLLRINRAATCVKWSP-------------LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS 148 (244)
Q Consensus 82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 148 (244)
|| +.++..........|...+.+++|+| ++..+++++.||.|++||++..............|..
T Consensus 128 wd--l~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~ 205 (753)
T 3jro_A 128 VE--FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205 (753)
T ss_dssp EE--CCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred EE--eecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC
Confidence 99 66665455566678999999999999 5899999999999999999988765555667778899
Q ss_pred ceeEEEecCC---CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEE
Q psy11529 149 TITCLDWHPN---NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKL 225 (244)
Q Consensus 149 ~v~~~~~~p~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 225 (244)
.|++++|+|+ +++|++++.||.|++||++..... ..........| ...|.+++|+|+|++|
T Consensus 206 ~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~-------------~~~~~~~~~~~---~~~v~~l~~spdg~~l 269 (753)
T 3jro_A 206 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP-------------WKKTLLKEEKF---PDVLWRASWSLSGNVL 269 (753)
T ss_dssp CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC-------------CBCCBSSSSCC---SSCCCCEEECTTTCCE
T ss_pred cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc-------------ceeEEeccCCC---CCceEEEEEcCCCCEE
Confidence 9999999999 899999999999999999532110 01122223345 7889999999999999
Q ss_pred EEeeCCCcEEEEeCCC
Q psy11529 226 CWTSHDGSINVRMSQQ 241 (244)
Q Consensus 226 ~~~~~dg~i~vwd~~~ 241 (244)
++++.||.|++|+++.
T Consensus 270 ~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 270 ALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEECSSSCEECCBCCS
T ss_pred EEEcCCCEEEEEecCC
Confidence 9999999999999874
No 64
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=234.79 Aligned_cols=220 Identities=13% Similarity=0.106 Sum_probs=165.4
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEE--EeCCCC-CeEEEEeCCccEEEEe
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGI--DWAPNT-NRIVTCSADRNAYVWT 83 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~iwd 83 (244)
.|...|++++|++++ .|++|+.||+|++||+.+ +. .+...+.+|...|.++ +|+|++ .+|++++.|++|+|||
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~--~~-~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD 339 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTD--PE-VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN 339 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEETTSEEEEEETTB--CS-SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred cCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCC--CC-CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence 467899999999864 899999999999999986 21 3455688999999999 578887 8999999999999999
Q ss_pred eeCCCCCceeeEEEeccC--cceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529 84 QNNDDKKWKPTLVLLRIN--RAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL 161 (244)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 161 (244)
+++++....+ .+|. ..+.+++|+|+++.+++++.|++|++||++.... .....+|.+.|++++|+|+|++
T Consensus 340 --~~~~~~~~~~--~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~----~~~l~gH~~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 340 --PKDIATTKTT--VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA----VHPLVSRETTITAIGVSRLHPM 411 (524)
T ss_dssp --GGGHHHHCEE--EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC----CEEEEECSSCEEEEECCSSCCB
T ss_pred --CCCCCccccc--ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc----ceeeecCCCceEEEEeCCCCCe
Confidence 6665543333 2333 3588999999999999999999999999998765 2334568899999999999999
Q ss_pred EEEeeCCCeEEEEEeeecccccCCCC-----------CCCCcc---------------ccccceeEEecCCCCCCCCeEE
Q psy11529 162 LGCGSTDFKVRVFSAYIKDIESAPQS-----------TNWGSK---------------STLGNCLVELNNSSSGGGWIHS 215 (244)
Q Consensus 162 l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~~~---------------~~~~~~~~~~~~~~~~~~~v~~ 215 (244)
|++|+.||+|++||+....+...... ..+... ...+..+..+.+| ...|.+
T Consensus 412 l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh---~~~V~~ 488 (524)
T 2j04_B 412 VLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAH---GINITC 488 (524)
T ss_dssp CEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------C---CCSCCC
T ss_pred EEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCC---CceEEE
Confidence 99999999999999754322211000 000000 0124566677788 899999
Q ss_pred EEEecCCC---EEEEeeCCCcEEEEeCCC
Q psy11529 216 VAFSKDGN---KLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 216 ~~~s~~~~---~l~~~~~dg~i~vwd~~~ 241 (244)
++|+|++. +|++|+.||.|+||+++-
T Consensus 489 Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 489 TKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EECCCCCCccHHHHhhccCceEEEEEccc
Confidence 99999964 999999999999999874
No 65
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=242.51 Aligned_cols=205 Identities=12% Similarity=0.073 Sum_probs=167.2
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
-|.+.|++++|+|++++||+|+.||.|+||+... . +....+ .|...|.+++|+| +++|++++.|++|++|| +
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~--~--~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd--~ 86 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ--V--EVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLS--L 86 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTT--C--EEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEE--T
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCC--c--EEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEE--C
Confidence 3689999999999999999999999999999876 3 333333 4788999999999 88999999999999999 7
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEE-------eeecCCCCceeEEEecCC-
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAK-------HIKKPIKSTITCLDWHPN- 158 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~~v~~~~~~p~- 158 (244)
.+++....+ .+...|++++|+|++++|++|+.|+.|++||++......... .....|.+.|.+++|+|+
T Consensus 87 ~~~~~~~~~---~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~ 163 (902)
T 2oaj_A 87 YSQKVLTTV---FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD 163 (902)
T ss_dssp TTCSEEEEE---ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTE
T ss_pred CCCcEEEEE---cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCC
Confidence 777654333 367889999999999999999999999999998775310000 123567889999999996
Q ss_pred CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC---------------CCCCCCeEEEEEecCCC
Q psy11529 159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS---------------SSGGGWIHSVAFSKDGN 223 (244)
Q Consensus 159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~s~~~~ 223 (244)
+..+++|+.||.| +||++ .++.+..+..| ..+...|.+++|+|+|+
T Consensus 164 ~~~l~~g~~dg~v-lWd~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~ 224 (902)
T 2oaj_A 164 IGTVLISYEYVTL-TYSLV------------------ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL 224 (902)
T ss_dssp EEEEEEECSSCEE-EEETT------------------TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred CCEEEEEeCCCcE-EEECC------------------CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence 4789999999999 99994 44444444332 00046799999999999
Q ss_pred EEEEeeCCCcEEEEeCCC
Q psy11529 224 KLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 224 ~l~~~~~dg~i~vwd~~~ 241 (244)
+|++++.||.|++||+++
T Consensus 225 ~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 225 HIITIHEDNSLVFWDANS 242 (902)
T ss_dssp EEEEEETTCCEEEEETTT
T ss_pred EEEEEECCCeEEEEECCC
Confidence 999999999999999975
No 66
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.9e-34 Score=240.50 Aligned_cols=209 Identities=15% Similarity=0.169 Sum_probs=183.3
Q ss_pred eeEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529 3 EVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW 82 (244)
Q Consensus 3 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 82 (244)
..+..|.+.|++++|+|++++|++++.+|.|+|||+.+ + .....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~--~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET--Q--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--T--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC--C--ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 34566799999999999999999999999999999977 5 7788889999999999999999999999999999999
Q ss_pred eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC-CCCE
Q psy11529 83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP-NNHL 161 (244)
Q Consensus 83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~ 161 (244)
| ..+++.. ..+..|...|.+++|+|++++|++++.|+.|++||++.+.. .......|...+.+++|+| +++.
T Consensus 83 ~--~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 83 N--YNTGEKV--VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA---LEQTFEGHEHFVMCVAFNPKDPST 155 (814)
T ss_dssp E--TTTCCEE--EEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE---EEEEEECCSSCEEEEEEETTEEEE
T ss_pred E--CCCCcEE--EEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce---EEEEEcCCCCcEEEEEEEcCCCCE
Confidence 9 7777643 34467899999999999999999999999999999988743 4556667889999999999 8899
Q ss_pred EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec--CCCEEEEeeCCCcEEEEeC
Q psy11529 162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK--DGNKLCWTSHDGSINVRMS 239 (244)
Q Consensus 162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~ 239 (244)
|++++.||.|++||+ ..++....+..++ ...+..++|+| ++.+|++++.||.|++||+
T Consensus 156 l~~~~~dg~v~vwd~------------------~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 156 FASGCLDRTVKVWSL------------------GQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp EEEEETTSEEEEEET------------------TCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred EEEEeCCCeEEEEEC------------------CCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 999999999999998 4455555665552 58899999999 9999999999999999998
Q ss_pred CCC
Q psy11529 240 QQV 242 (244)
Q Consensus 240 ~~~ 242 (244)
++.
T Consensus 216 ~~~ 218 (814)
T 3mkq_A 216 QTK 218 (814)
T ss_dssp TTT
T ss_pred CCC
Confidence 753
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-34 Score=222.06 Aligned_cols=201 Identities=18% Similarity=0.240 Sum_probs=175.9
Q ss_pred CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND 87 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 87 (244)
|.+.|++++|+|++++|++++.||.|++|+... .....+.+|...|.+++|+|++++|++++.|+.|++|| +.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd--~~ 179 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG-----ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN--VI 179 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETTS-----CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEE--TT
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEE--CC
Confidence 466999999999999999999999999999554 67788899999999999999999999999999999999 55
Q ss_pred CCCcee------------------------------------------------------eEEEeccCcceEEEEECCCC
Q psy11529 88 DKKWKP------------------------------------------------------TLVLLRINRAATCVKWSPLE 113 (244)
Q Consensus 88 ~~~~~~------------------------------------------------------~~~~~~~~~~v~~~~~~~~~ 113 (244)
+++... ...+..|...+.+++|+|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 543221 11233567889999999999
Q ss_pred CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcc
Q psy11529 114 NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSK 193 (244)
Q Consensus 114 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 193 (244)
++|++++.|+.|++||++..+. ......|...+.+++|+|++ ++++++.|+.|++||+
T Consensus 260 ~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~----------------- 317 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGNGNS----QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSL----------------- 317 (425)
T ss_dssp TEEEEEETTSCEEEECSSSBSC----SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEET-----------------
T ss_pred CEEEEEcCCCEEEEEECCCCcc----ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEEC-----------------
Confidence 9999999999999999998765 34446678899999999999 9999999999999999
Q ss_pred ccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 194 STLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
..++.+..+..| ...+.+++|+|++++|++++.||.|++||+++
T Consensus 318 -~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 318 -KQNTLLALSIVD---GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp -TTTEEEEEEECT---TCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred -CCCcEeEecccC---CccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 667888888888 88999999999999999999999999999874
No 68
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.2e-35 Score=224.05 Aligned_cols=205 Identities=15% Similarity=0.240 Sum_probs=172.1
Q ss_pred EeCCCceEEEEEcCC----C---CeEEEecCCCeEEEeeeccCCCccee-----eeeeccC-----CCceEEEEeC----
Q psy11529 6 SFGINPVTTHAWNNT----R---QQLAFTPNNQEVHLYQYEKAANDWSQ-----LDVLDGH-----DLKVTGIDWA---- 64 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~----~---~~l~~~~~d~~v~v~~~~~~~~~~~~-----~~~~~~~-----~~~v~~~~~~---- 64 (244)
..|..+|.+++|+|+ + ++|++++.|+.|++|++.. + +. ...+..| ...|.+++|+
T Consensus 59 ~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~--~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 134 (397)
T 1sq9_A 59 FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR--E--DETKKVIFEKLDLLDSDMKKHSFWALKWGASND 134 (397)
T ss_dssp ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE--C--TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC--C--cccccccceeecccccccCCCcEEEEEEeeccC
Confidence 346899999999999 9 9999999999999999977 3 33 6677778 5999999999
Q ss_pred CCCCe-EEEEeCCccEEEEeeeCCC------CCcee-----eEEE-----eccCcceEEEEECCCCCeEEEeeCCCeEEE
Q psy11529 65 PNTNR-IVTCSADRNAYVWTQNNDD------KKWKP-----TLVL-----LRINRAATCVKWSPLENKFAAGSGARLISV 127 (244)
Q Consensus 65 ~~~~~-l~~~~~d~~i~iwd~~~~~------~~~~~-----~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 127 (244)
|++++ |++++.|+.|++||+ .+ ++... .+.. ..+...+.+++|+|++ ++++++.|+.|++
T Consensus 135 ~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i 211 (397)
T 1sq9_A 135 RLLSHRLVATDVKGTTYIWKF--HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI 211 (397)
T ss_dssp ---CEEEEEEETTSCEEEEEE--ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE
T ss_pred CCCceEEEEEeCCCcEEEEeC--CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEE
Confidence 99999 999999999999994 44 33322 2222 3478889999999999 9999999999999
Q ss_pred EEeecCCCceEEEeeecC---C---CCceeEEEecCCCCEEEEeeCC---CeEEEEEeeecccccCCCCCCCCccccccc
Q psy11529 128 CYFESENDWWVAKHIKKP---I---KSTITCLDWHPNNHLLGCGSTD---FKVRVFSAYIKDIESAPQSTNWGSKSTLGN 198 (244)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~---~---~~~v~~~~~~p~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 198 (244)
||+++.+. ...... | ...+.+++|+|++++|++++.| |.|++||+ ..++
T Consensus 212 ~d~~~~~~----~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~------------------~~~~ 269 (397)
T 1sq9_A 212 SELSTLRP----LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET------------------EFGE 269 (397)
T ss_dssp EETTTTEE----EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET------------------TTCC
T ss_pred EECCCCce----eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC------------------CCCc
Confidence 99988754 333444 6 7899999999999999999999 99999999 5677
Q ss_pred eeEEecC-------------CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 199 CLVELNN-------------SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 199 ~~~~~~~-------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
.+..+.. | ...|.+++|+|++++|++++.||.|++||+++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 270 RIGSLSVPTHSSQASLGEFAH---SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp EEEEECBC--------CCBSB---SSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred ccceeccCccccccccccccc---CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 7777877 7 899999999999999999999999999999764
No 69
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.6e-34 Score=220.50 Aligned_cols=204 Identities=15% Similarity=0.110 Sum_probs=164.2
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCC-eEEEEeCCccEEEEeeeCC
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRNAYVWTQNND 87 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~ 87 (244)
...|.+++|+|++++|++++.|+.|++||++. +.+..+.+|...|.+++|+|+++ +|++++.|+.|++|| +.
T Consensus 163 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd--~~ 235 (383)
T 3ei3_B 163 DYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-----HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWD--LR 235 (383)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSEEEEEETTS-----CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEE--GG
T ss_pred CCCeEEEEECCCCCEEEEECCCCCEEEEECCC-----CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEe--CC
Confidence 47799999999999999999999999999965 67888899999999999999998 899999999999999 55
Q ss_pred CCCc-eeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEEeee---cCC----------CCceeE
Q psy11529 88 DKKW-KPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAKHIK---KPI----------KSTITC 152 (244)
Q Consensus 88 ~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~----------~~~v~~ 152 (244)
+.+. ........|...+.+++|+| ++++|++++.|+.|++||+++.+......... ..+ ...+..
T Consensus 236 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 315 (383)
T 3ei3_B 236 NIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIV 315 (383)
T ss_dssp GCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEE
T ss_pred CCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceE
Confidence 4221 11222336899999999999 99999999999999999998876522222111 111 134455
Q ss_pred EEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC
Q psy11529 153 LDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG 232 (244)
Q Consensus 153 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 232 (244)
++|+|++++ +++.||.|++||+ .+++.+..+..+. ....+..++|+|++++|++++ ||
T Consensus 316 ~~~s~dg~~--s~s~d~~i~iwd~------------------~~~~~~~~l~~~~-~~~~~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 316 AGRYPDDQL--LLNDKRTIDIYDA------------------NSGGLVHQLRDPN-AAGIISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp EECBCCTTT--CTTCCCCEEEEET------------------TTCCEEEEECBTT-BCSCCCEEEECTTSSEEEEEE-TT
T ss_pred EEecCCccc--ccCCCCeEEEEec------------------CCCceeeeecCCC-CCceEEEEEEecCccEEEEec-CC
Confidence 777777766 7789999999999 6788888887631 056788889999999999997 99
Q ss_pred cEEEEeCCC
Q psy11529 233 SINVRMSQQ 241 (244)
Q Consensus 233 ~i~vwd~~~ 241 (244)
.|++||+++
T Consensus 374 ~i~iw~~~~ 382 (383)
T 3ei3_B 374 NILIWNRED 382 (383)
T ss_dssp EEEEEECC-
T ss_pred cEEEEecCC
Confidence 999999975
No 70
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-34 Score=220.60 Aligned_cols=214 Identities=16% Similarity=0.203 Sum_probs=171.6
Q ss_pred EEeCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeee---ccCCCceEEEEeCCCCCeEEEEeCCccEE
Q psy11529 5 YSFGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL---DGHDLKVTGIDWAPNTNRIVTCSADRNAY 80 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 80 (244)
+..|..+|.+++|+| ++++|++++.||.|++||+.. + +....+ .+|...|.+++|+|++++|++++.|+.|+
T Consensus 111 ~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 186 (366)
T 3k26_A 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT--D--TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 186 (366)
T ss_dssp EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT--T--EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec--C--eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEE
Confidence 334689999999999 899999999999999999977 4 556666 68999999999999999999999999999
Q ss_pred EEeeeCCCCCceee--------------------------EEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCC
Q psy11529 81 VWTQNNDDKKWKPT--------------------------LVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEN 134 (244)
Q Consensus 81 iwd~~~~~~~~~~~--------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 134 (244)
+|| +.+++.... .....|...|.+++|+ ++++++++.|+.|++||++...
T Consensus 187 i~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~ 262 (366)
T 3k26_A 187 LWR--INSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKME 262 (366)
T ss_dssp EEE--SCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTT
T ss_pred EEE--CCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcc
Confidence 999 555432211 1112378899999998 6799999999999999998764
Q ss_pred C----------ceEEEeeecCCCCceeEEEecCC--CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEE
Q psy11529 135 D----------WWVAKHIKKPIKSTITCLDWHPN--NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVE 202 (244)
Q Consensus 135 ~----------~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (244)
. ..........|...+.+++|+|+ +++|++++.||.|++||+...+. .......
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~--------------~~~~~~~ 328 (366)
T 3k26_A 263 DDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP--------------HKAKCTT 328 (366)
T ss_dssp CCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG--------------GGCEEEE
T ss_pred ccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC--------------ccccceE
Confidence 3 11234455667788999999999 99999999999999999953321 1224445
Q ss_pred ecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 203 LNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 203 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
+..|. +...|++++|+|++++|++++.||.|++||+.+
T Consensus 329 ~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 329 LTHHK-CGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp ECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred Ecccc-cCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 65541 147899999999999999999999999999864
No 71
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=217.39 Aligned_cols=227 Identities=12% Similarity=0.065 Sum_probs=175.0
Q ss_pred EEeCCCceEEEE------EcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC----ceEEEE----eCCCCCeE
Q psy11529 5 YSFGINPVTTHA------WNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL----KVTGID----WAPNTNRI 70 (244)
Q Consensus 5 ~~~~~~~v~~~~------~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~----~v~~~~----~~~~~~~l 70 (244)
+..|...|.+++ |+|++++|++++.|+.|++||+.. +. .....+..|.+ .+.+++ |+|+++++
T Consensus 107 ~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~--~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 183 (357)
T 3i2n_A 107 VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQ--KD-DPVANMEPVQGENKRDCWTVAFGNAYNQEERVV 183 (357)
T ss_dssp ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTS--CS-SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEE
T ss_pred EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCC--CC-CcceeccccCCCCCCceEEEEEEeccCCCCCEE
Confidence 344688999995 578999999999999999999977 31 24555554443 889998 78899999
Q ss_pred EEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECC---CCCeEEEeeCCCeEEEEEeecCCCceEE-EeeecCC
Q psy11529 71 VTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSP---LENKFAAGSGARLISVCYFESENDWWVA-KHIKKPI 146 (244)
Q Consensus 71 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~ 146 (244)
++++.|+.|++|| +.+++. .....+...+.+++|+| ++.+|++++.|+.|++||++..+..... ......|
T Consensus 184 ~~~~~d~~i~i~d--~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 258 (357)
T 3i2n_A 184 CAGYDNGDIKLFD--LRNMAL---RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH 258 (357)
T ss_dssp EEEETTSEEEEEE--TTTTEE---EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC
T ss_pred EEEccCCeEEEEE--CccCce---eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC
Confidence 9999999999999 777663 33356788999999999 8999999999999999999887552222 1233478
Q ss_pred CCceeEEEecCCCC-EEEEeeCCCeEEEEEeeecccccCCCC-CCCCccccccceeEEecCCCCCCCCeEEEEEecCCCE
Q psy11529 147 KSTITCLDWHPNNH-LLGCGSTDFKVRVFSAYIKDIESAPQS-TNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNK 224 (244)
Q Consensus 147 ~~~v~~~~~~p~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 224 (244)
...|.+++|+|+++ +|++++.||.|++||++.......... ..........+.+..+..| ...|.+++|+|++++
T Consensus 259 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~ 335 (357)
T 3i2n_A 259 KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS---TQPISSLDWSPDKRG 335 (357)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC---SSCEEEEEECSSSTT
T ss_pred cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC---CCCeeEEEEcCCCCe
Confidence 89999999999998 899999999999999975432211000 0000001123567788888 899999999999999
Q ss_pred EE-EeeCCCcEEEEeCCCC
Q psy11529 225 LC-WTSHDGSINVRMSQQV 242 (244)
Q Consensus 225 l~-~~~~dg~i~vwd~~~~ 242 (244)
|+ +++.||.|++||+.++
T Consensus 336 l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 336 LCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEETTSEEEEEEECC-
T ss_pred EEEEecCCCcEEEEECCCc
Confidence 98 8999999999999875
No 72
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-35 Score=225.41 Aligned_cols=208 Identities=20% Similarity=0.305 Sum_probs=175.6
Q ss_pred eCCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCC-----cceeeeeeccCCCceEEEEeCCC-CCeEEEEeCCccE
Q psy11529 7 FGINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAAN-----DWSQLDVLDGHDLKVTGIDWAPN-TNRIVTCSADRNA 79 (244)
Q Consensus 7 ~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i 79 (244)
.|...|.+++|+|+ +++|++++.|+.|++||+..... .......+..|...|.+++|+|+ +.+|++++.|+.|
T Consensus 111 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 190 (416)
T 2pm9_A 111 NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFA 190 (416)
T ss_dssp CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCE
T ss_pred CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCE
Confidence 46889999999998 89999999999999999977210 01122345679999999999998 7899999999999
Q ss_pred EEEeeeCCCCCceeeEEEecc------CcceEEEEECCCC-CeEEEeeCCC---eEEEEEeecCCCceEEEeeec-CCCC
Q psy11529 80 YVWTQNNDDKKWKPTLVLLRI------NRAATCVKWSPLE-NKFAAGSGAR---LISVCYFESENDWWVAKHIKK-PIKS 148 (244)
Q Consensus 80 ~iwd~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~-~~~~ 148 (244)
++|| +.+++....+ ..+ ...+.+++|+|++ .++++++.|+ .|++||++.... ...... .|..
T Consensus 191 ~iwd--~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~ 263 (416)
T 2pm9_A 191 SIWD--LKAKKEVIHL--SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT---PLQTLNQGHQK 263 (416)
T ss_dssp EEEE--TTTTEEEEEE--CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS---CSBCCCSCCSS
T ss_pred EEEE--CCCCCcceEE--eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC---CcEEeecCccC
Confidence 9999 7776643333 333 6789999999997 6899999998 999999998643 234444 7889
Q ss_pred ceeEEEecC-CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC-CEEE
Q psy11529 149 TITCLDWHP-NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG-NKLC 226 (244)
Q Consensus 149 ~v~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~ 226 (244)
.+.+++|+| ++++|++++.||.|++||+ ..++.+..+..| ...|.+++|+|++ .+|+
T Consensus 264 ~v~~~~~s~~~~~~l~s~~~dg~v~~wd~------------------~~~~~~~~~~~~---~~~v~~~~~s~~~~~~l~ 322 (416)
T 2pm9_A 264 GILSLDWCHQDEHLLLSSGRDNTVLLWNP------------------ESAEQLSQFPAR---GNWCFKTKFAPEAPDLFA 322 (416)
T ss_dssp CEEEEEECSSCSSCEEEEESSSEEEEECS------------------SSCCEEEEEECS---SSCCCCEEECTTCTTEEE
T ss_pred ceeEEEeCCCCCCeEEEEeCCCCEEEeeC------------------CCCccceeecCC---CCceEEEEECCCCCCEEE
Confidence 999999999 8999999999999999999 677888899998 8999999999999 8999
Q ss_pred EeeCCCcEEEEeCCCC
Q psy11529 227 WTSHDGSINVRMSQQV 242 (244)
Q Consensus 227 ~~~~dg~i~vwd~~~~ 242 (244)
+++.||.|++||+++.
T Consensus 323 s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 323 CASFDNKIEVQTLQNL 338 (416)
T ss_dssp ECCSSSEEEEEESCCC
T ss_pred EEecCCcEEEEEccCC
Confidence 9999999999999865
No 73
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7.2e-34 Score=221.20 Aligned_cols=225 Identities=15% Similarity=0.272 Sum_probs=176.7
Q ss_pred EEeCCCceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCC---cceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccE
Q psy11529 5 YSFGINPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAAN---DWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNA 79 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i 79 (244)
+..|...|.+++|+|++. +|++|+.||.|++|++..... .......+.+|...|.+++|+| ++.+|++++.|+.|
T Consensus 177 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i 256 (430)
T 2xyi_A 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256 (430)
T ss_dssp EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeE
Confidence 345688999999999988 999999999999999975211 1122456778999999999999 77899999999999
Q ss_pred EEEeeeCCCCC-ceeeEEEeccCcceEEEEECCCCC-eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529 80 YVWTQNNDDKK-WKPTLVLLRINRAATCVKWSPLEN-KFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP 157 (244)
Q Consensus 80 ~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 157 (244)
++|| ++++. ......+..|...+++++|+|++. +|++++.|+.|++||++.... .......|...|.+++|+|
T Consensus 257 ~i~d--~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---~~~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 257 MIWD--TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---KLHSFESHKDEIFQVQWSP 331 (430)
T ss_dssp EEEE--TTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEECCSSCEEEEEECS
T ss_pred EEEE--CCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC---CeEEeecCCCCEEEEEECC
Confidence 9999 55542 223444567889999999999987 688999999999999998543 2344556889999999999
Q ss_pred CCC-EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEeeCCCcEE
Q psy11529 158 NNH-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTSHDGSIN 235 (244)
Q Consensus 158 ~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~ 235 (244)
+++ +|++++.||.|++||++........ ........+.+..+.+| ...|++++|+|+++ +|++++.||.|+
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~h---~~~v~~~~~~p~~~~~l~s~s~dg~i~ 404 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQST----EDAEDGPPELLFIHGGH---TAKISDFSWNPNEPWIICSVSEDNIMQ 404 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCH----HHHHHCCTTEEEECCCC---SSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCc----cccccCCcceEEEcCCC---CCCceEEEECCCCCCEEEEEECCCCEE
Confidence 985 7999999999999999542111000 00000113667777788 88999999999999 899999999999
Q ss_pred EEeCCC
Q psy11529 236 VRMSQQ 241 (244)
Q Consensus 236 vwd~~~ 241 (244)
+|++.+
T Consensus 405 iw~~~~ 410 (430)
T 2xyi_A 405 VWQMAE 410 (430)
T ss_dssp EEEECH
T ss_pred EeEccc
Confidence 999864
No 74
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.2e-35 Score=221.78 Aligned_cols=220 Identities=13% Similarity=0.140 Sum_probs=176.1
Q ss_pred CCCceEEEEEcCC----CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEE
Q psy11529 8 GINPVTTHAWNNT----RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVW 82 (244)
Q Consensus 8 ~~~~v~~~~~~~~----~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iw 82 (244)
+...|.+++|+|+ +++|++|+.||.|++||+.+ + +.+..+.+|...|.+++|+| ++++|++++.|+.|++|
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw 143 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--M--QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 143 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT--C--CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh--c--eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 4578999999999 67999999999999999987 4 67778889999999999999 99999999999999999
Q ss_pred eeeCCCCCceeeEE-EeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceE-----------------------
Q psy11529 83 TQNNDDKKWKPTLV-LLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWV----------------------- 138 (244)
Q Consensus 83 d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----------------------- 138 (244)
| +.+++....+. ...|...+.+++|+|++++|++++.|+.|++||+++.+....
T Consensus 144 d--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T 3k26_A 144 N--IQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF 221 (366)
T ss_dssp E--TTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred E--eecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeecc
Confidence 9 67765322221 046889999999999999999999999999999987543100
Q ss_pred -EEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEE
Q psy11529 139 -AKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVA 217 (244)
Q Consensus 139 -~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (244)
.......|...|.+++|+ +++|++++.||.|++||++........ ..........+..+..| ...|.+++
T Consensus 222 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~v~~~~ 292 (366)
T 3k26_A 222 PDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDK----IKPSESNVTILGRFDYS---QCDIWYMR 292 (366)
T ss_dssp CSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGG----CCTTCCCEEEEEEEECS---SCCSSCCC
T ss_pred CccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccc----cccCCcchheecccccc---CCcEEEEE
Confidence 011223378899999999 779999999999999998643321110 00011223557778888 88999999
Q ss_pred EecC--CCEEEEeeCCCcEEEEeCCCC
Q psy11529 218 FSKD--GNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 218 ~s~~--~~~l~~~~~dg~i~vwd~~~~ 242 (244)
|+|+ +++|++++.||.|++||+++.
T Consensus 293 ~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 293 FSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp CEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred EcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 9999 999999999999999999864
No 75
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=224.10 Aligned_cols=208 Identities=13% Similarity=0.246 Sum_probs=173.3
Q ss_pred CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC-CCeEEEEeCCccEEEEeeeC
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN-TNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~ 86 (244)
+...|.+++|+|++++|++++.|+.|++|++............+.+|...|.+++|+|+ +++|++++.|+.|++|| +
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd--~ 143 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD--M 143 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB--T
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE--C
Confidence 47899999999999999999999999999997521112477788899999999999998 89999999999999999 6
Q ss_pred CCCC------cee-eEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCC------CCceeE
Q psy11529 87 DDKK------WKP-TLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPI------KSTITC 152 (244)
Q Consensus 87 ~~~~------~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~v~~ 152 (244)
.+++ ... ......|...+.+++|+|+ +.+|++++.|+.|++||++..+. ......+ ...+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE----VIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE----EEEECCCCCSSCCCCCEEE
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc----ceEEeccccccccCCceEE
Confidence 6554 111 1122467889999999999 78999999999999999988764 2223332 688999
Q ss_pred EEecCCC-CEEEEeeCCC---eEEEEEeeecccccCCCCCCCCcccccc-ceeEEec-CCCCCCCCeEEEEEec-CCCEE
Q psy11529 153 LDWHPNN-HLLGCGSTDF---KVRVFSAYIKDIESAPQSTNWGSKSTLG-NCLVELN-NSSSGGGWIHSVAFSK-DGNKL 225 (244)
Q Consensus 153 ~~~~p~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l 225 (244)
++|+|++ .++++++.|+ .|++||++ .+ ..+..+. +| ...|.+++|+| ++++|
T Consensus 220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~------------------~~~~~~~~~~~~~---~~~v~~~~~s~~~~~~l 278 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDNDPSILIWDLR------------------NANTPLQTLNQGH---QKGILSLDWCHQDEHLL 278 (416)
T ss_dssp EEECSSCTTEEEEEECCSSSCCCCEEETT------------------STTSCSBCCCSCC---SSCEEEEEECSSCSSCE
T ss_pred EEECCCCCCEEEEEECCCCCceEEEEeCC------------------CCCCCcEEeecCc---cCceeEEEeCCCCCCeE
Confidence 9999997 6899999998 99999984 32 4556666 77 88999999999 99999
Q ss_pred EEeeCCCcEEEEeCCCC
Q psy11529 226 CWTSHDGSINVRMSQQV 242 (244)
Q Consensus 226 ~~~~~dg~i~vwd~~~~ 242 (244)
++++.||.|++||+++.
T Consensus 279 ~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 279 LSSGRDNTVLLWNPESA 295 (416)
T ss_dssp EEEESSSEEEEECSSSC
T ss_pred EEEeCCCCEEEeeCCCC
Confidence 99999999999999864
No 76
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=216.44 Aligned_cols=223 Identities=17% Similarity=0.255 Sum_probs=171.8
Q ss_pred eEEeCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeee-----------ccCCCceEEEEeCC-CCCeE
Q psy11529 4 VYSFGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-----------DGHDLKVTGIDWAP-NTNRI 70 (244)
Q Consensus 4 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~-~~~~l 70 (244)
+...|.++|++++|+| ++++|++|+.||.|++|++.. +........ .+|...|.+++|+| ++.+|
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLEN--SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCC--CSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCC--CcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 4455799999999999 999999999999999999976 311111111 35999999999999 78899
Q ss_pred EEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCC---CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC
Q psy11529 71 VTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL---ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK 147 (244)
Q Consensus 71 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 147 (244)
++++.|+.|++|| +.+++.... ..+...+.++.|+|. +.++++++.++.|++||+++.+. ......|.
T Consensus 116 ~s~~~d~~i~iwd--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~----~~~~~~~~ 186 (408)
T 4a11_B 116 TSSSFDKTLKVWD--TNTLQTADV---FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC----SHILQGHR 186 (408)
T ss_dssp EEEETTSEEEEEE--TTTTEEEEE---EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC----CEEECCCC
T ss_pred EEEeCCCeEEEee--CCCCcccee---ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce----eeeecCCC
Confidence 9999999999999 777664333 346788999999985 45899999999999999998865 34556788
Q ss_pred CceeEEEecCCCC-EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEE
Q psy11529 148 STITCLDWHPNNH-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLC 226 (244)
Q Consensus 148 ~~v~~~~~~p~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 226 (244)
..|.+++|+|+++ ++++++.||.|++||++.............+ ............| ...|.+++|+|++++|+
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG--KKSQAVESANTAH---NGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT--CSCCCTTTSSCSC---SSCEEEEEECTTSSEEE
T ss_pred CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc--ccceeeccccccc---cCceeEEEEcCCCCEEE
Confidence 9999999999998 5899999999999999643211000000000 0011111222455 88999999999999999
Q ss_pred EeeCCCcEEEEeCCCC
Q psy11529 227 WTSHDGSINVRMSQQV 242 (244)
Q Consensus 227 ~~~~dg~i~vwd~~~~ 242 (244)
+++.||.|++||+++.
T Consensus 262 ~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 262 TVGTDNRMRLWNSSNG 277 (408)
T ss_dssp EEETTSCEEEEETTTC
T ss_pred EecCCCeEEEEECCCC
Confidence 9999999999999864
No 77
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=214.09 Aligned_cols=223 Identities=12% Similarity=0.121 Sum_probs=177.4
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----ccEE
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----RNAY 80 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~ 80 (244)
..|.+.|.+++|+|++++|++++.|+.|++||+.+ + +....+. +...|.+++|+|+++++++++.+ +.|.
T Consensus 71 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~ 145 (369)
T 3zwl_B 71 DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN--G--QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145 (369)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--C--CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEE
T ss_pred hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C--cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEE
Confidence 34689999999999999999999999999999987 4 5566666 88999999999999999999988 9999
Q ss_pred EEeeeCCCCCce---------eeEEEeccCc--ceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCc
Q psy11529 81 VWTQNNDDKKWK---------PTLVLLRINR--AATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKST 149 (244)
Q Consensus 81 iwd~~~~~~~~~---------~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 149 (244)
+||+ ...... .......+.. .+.+++|+|++++|++++.|+.|++||++.... .......|...
T Consensus 146 ~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~ 220 (369)
T 3zwl_B 146 IYEI--ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE---YVDSIDLHEKS 220 (369)
T ss_dssp EEEE--EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE---EEEEEECCSSC
T ss_pred EEEe--cCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE---eEEEEecCCCc
Confidence 9995 333221 1222334444 899999999999999999999999999988432 34555667889
Q ss_pred eeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCC-------------CC--C----------------------Cc
Q psy11529 150 ITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQS-------------TN--W----------------------GS 192 (244)
Q Consensus 150 v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------~~--~----------------------~~ 192 (244)
+.+++|+|++++|++++.||.|++||++.......... .. . .-
T Consensus 221 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (369)
T 3zwl_B 221 ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFY 300 (369)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEE
T ss_pred eeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEE
Confidence 99999999999999999999999999865432211000 00 0 00
Q ss_pred cccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 193 KSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
....++.+..+.+| ...|.+++|+|++++|++++.||.|++|++++
T Consensus 301 d~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 301 HKIFEEEIGRVQGH---FGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ETTTCCEEEEEECC---SSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ecCCCcchhheecc---cCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 11234556677778 89999999999999999999999999999874
No 78
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-34 Score=223.91 Aligned_cols=210 Identities=12% Similarity=0.072 Sum_probs=166.2
Q ss_pred eCCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCC--CcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529 7 FGINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAA--NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT 83 (244)
Q Consensus 7 ~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 83 (244)
.|.++|++++|+| ++++|++|+.||.|+|||+.... ...+....+ .|...|.+++|+|++++|++++.|+.|++||
T Consensus 61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd 139 (437)
T 3gre_A 61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLK 139 (437)
T ss_dssp TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 3689999999999 99999999999999999985410 111223333 4999999999999999999999999999999
Q ss_pred eeC-CCCCceeeEE--------Eec--cCcceEEEE--ECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC--CCC
Q psy11529 84 QNN-DDKKWKPTLV--------LLR--INRAATCVK--WSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP--IKS 148 (244)
Q Consensus 84 ~~~-~~~~~~~~~~--------~~~--~~~~v~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~ 148 (244)
+.. ..++...... +.. +...+.++. +++++.+|++++.|+.|++||+++.+. ...... |..
T Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~h~~ 215 (437)
T 3gre_A 140 VNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER----LQIIENSPRHG 215 (437)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE----EEEEECCGGGC
T ss_pred eccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee----eEEEccCCCCC
Confidence 421 1333222111 111 445566666 668899999999999999999998765 223333 778
Q ss_pred ceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEec----CCC
Q psy11529 149 TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSK----DGN 223 (244)
Q Consensus 149 ~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~----~~~ 223 (244)
.|++++|+|++++|++|+.||.|++||+ ..++++..+. .| ...|.+++|+| ++.
T Consensus 216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~------------------~~~~~~~~~~~~~---~~~v~~~~~~~~~s~~~~ 274 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTTRGIIDIWDI------------------RFNVLIRSWSFGD---HAPITHVEVCQFYGKNSV 274 (437)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEET------------------TTTEEEEEEBCTT---CEEEEEEEECTTTCTTEE
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEEc------------------CCccEEEEEecCC---CCceEEEEeccccCCCcc
Confidence 9999999999999999999999999999 5677888776 55 77899996664 688
Q ss_pred EEEEeeCCCcEEEEeCCCC
Q psy11529 224 KLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 224 ~l~~~~~dg~i~vwd~~~~ 242 (244)
+|++++.||.|++||+++.
T Consensus 275 ~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 275 IVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp EEEEESTTEEEEEEETTTT
T ss_pred EEEEEcCCCcEEEEEcCCC
Confidence 9999999999999999753
No 79
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=218.28 Aligned_cols=221 Identities=12% Similarity=0.110 Sum_probs=174.3
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcc----------------------------------------
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDW---------------------------------------- 45 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~---------------------------------------- 45 (244)
..|..+|.+++|+|++++|++++.|+.|++|++.. +..
T Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (425)
T 1r5m_A 146 NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS--GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP 223 (425)
T ss_dssp CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT--TEEEEEECCC---------------CCCBSCCEEEETTEEEEE
T ss_pred cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCC--CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEE
Confidence 34688999999999999999999999999999864 210
Q ss_pred --------------eeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECC
Q psy11529 46 --------------SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSP 111 (244)
Q Consensus 46 --------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 111 (244)
+....+..|...|.+++|+|++++|++++.|+.|++|| +.+++. ...+..|...+.+++|+|
T Consensus 224 ~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~--~~~~~~~~~~i~~~~~~~ 299 (425)
T 1r5m_A 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH--GGNGNS--QNCFYGHSQSIVSASWVG 299 (425)
T ss_dssp CGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC--SSSBSC--SEEECCCSSCEEEEEEET
T ss_pred cCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE--CCCCcc--ceEecCCCccEEEEEECC
Confidence 11234557889999999999999999999999999999 666654 334456889999999999
Q ss_pred CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCC--
Q psy11529 112 LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTN-- 189 (244)
Q Consensus 112 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-- 189 (244)
++ .+++++.|+.|++||+++.+. ......+...+.+++|+|++++|++++.||.|++||++............
T Consensus 300 ~~-~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 374 (425)
T 1r5m_A 300 DD-KVISCSMDGSVRLWSLKQNTL----LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRD 374 (425)
T ss_dssp TT-EEEEEETTSEEEEEETTTTEE----EEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC----------
T ss_pred CC-EEEEEeCCCcEEEEECCCCcE----eEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccc
Confidence 99 999999999999999988754 44455677899999999999999999999999999995433110000000
Q ss_pred CCccccccceeEEecCCCCCCC--CeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529 190 WGSKSTLGNCLVELNNSSSGGG--WIHSVAFSKDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 240 (244)
........+.+..+..| .. .|.+++|+|++++|++++.||.|++||++
T Consensus 375 ~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 375 GILNPLPIPLYASYQSS---QDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ----CEECCEEEEECCT---TCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cccCcccchhhhhhcCc---ccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 00000112367788887 55 99999999999999999999999999986
No 80
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=220.15 Aligned_cols=203 Identities=10% Similarity=0.031 Sum_probs=167.7
Q ss_pred CCceEEEEEcCCCCeE-EEecCCCeEEEeeec--cCCCcceeeeeec--cCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529 9 INPVTTHAWNNTRQQL-AFTPNNQEVHLYQYE--KAANDWSQLDVLD--GHDLKVTGIDWAPNTNRIVTCSADRNAYVWT 83 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l-~~~~~d~~v~v~~~~--~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 83 (244)
.+.|.+++|+|++++| ++++.|+.|+||++. . + .....+. .|...|.+++|+|++++|++++.++.+++|+
T Consensus 102 ~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~--~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS--K--NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS--S--SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC--C--ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 4579999999999996 889999999999998 5 4 4455554 5788999999999999999999999999999
Q ss_pred eeCCCCCce--eeEEEeccCcceEEEEECCC---CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC
Q psy11529 84 QNNDDKKWK--PTLVLLRINRAATCVKWSPL---ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN 158 (244)
Q Consensus 84 ~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 158 (244)
+.++... ....+.+|...|.+++|+|+ +++|++++.|+.|++||++++.. ......+|...|.+++|+ +
T Consensus 178 --~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~h~~~v~~~~~s-d 251 (450)
T 2vdu_B 178 --INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI---VDKWLFGHKHFVSSICCG-K 251 (450)
T ss_dssp --TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC---EEEECCCCSSCEEEEEEC-S
T ss_pred --cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce---eeeeecCCCCceEEEEEC-C
Confidence 6665433 12234568899999999999 99999999999999999998875 333456788999999999 9
Q ss_pred CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC----------------------CCCCCeEEE
Q psy11529 159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS----------------------SGGGWIHSV 216 (244)
Q Consensus 159 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~v~~~ 216 (244)
+++|++++.|+.|++||++ +++.+..+..++ .....+.++
T Consensus 252 ~~~l~s~~~d~~v~vwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 252 DYLLLSAGGDDKIFAWDWK------------------TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp TTEEEEEESSSEEEEEETT------------------TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred CCEEEEEeCCCeEEEEECC------------------CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 9999999999999999994 444444443110 004679999
Q ss_pred EEecCCCEEEEee-CCCcEEEEeC
Q psy11529 217 AFSKDGNKLCWTS-HDGSINVRMS 239 (244)
Q Consensus 217 ~~s~~~~~l~~~~-~dg~i~vwd~ 239 (244)
+|+|++++|++++ .|+.|++|++
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEe
Confidence 9999999999998 8999999999
No 81
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=212.66 Aligned_cols=224 Identities=12% Similarity=0.113 Sum_probs=177.3
Q ss_pred CCCceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC---CCeEEEEeCCccEEEEe
Q psy11529 8 GINPVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN---TNRIVTCSADRNAYVWT 83 (244)
Q Consensus 8 ~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd 83 (244)
|..+|.+++|+| ++++|++++.|+.|++|++.. + +....+. +...+.++.|+|. +.++++++.|+.|++||
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT--L--QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT--T--EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC--C--ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 789999999999 778999999999999999987 4 5555555 7888999999984 45999999999999999
Q ss_pred eeCCCCCceeeEEEeccCcceEEEEECCCCCe-EEEeeCCCeEEEEEeecCCCceEE------------EeeecCCCCce
Q psy11529 84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENK-FAAGSGARLISVCYFESENDWWVA------------KHIKKPIKSTI 150 (244)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~------------~~~~~~~~~~v 150 (244)
+.+++. ...+..|...+.+++|+|++++ +++++.|+.|++||++........ ......|...|
T Consensus 173 --~~~~~~--~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 248 (408)
T 4a11_B 173 --LKSGSC--SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248 (408)
T ss_dssp --SSSSCC--CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred --CCCcce--eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence 666654 3445678899999999999884 889999999999999876531000 11114577899
Q ss_pred eEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCC-------CCc----------------------cccccceeE
Q psy11529 151 TCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTN-------WGS----------------------KSTLGNCLV 201 (244)
Q Consensus 151 ~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~----------------------~~~~~~~~~ 201 (244)
.+++|+|++++|++++.||.|++||++............ ... ....++.+.
T Consensus 249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 328 (408)
T 4a11_B 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT 328 (408)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE
T ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee
Confidence 999999999999999999999999997544321110000 000 124567778
Q ss_pred EecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCC
Q psy11529 202 ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVL 243 (244)
Q Consensus 202 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 243 (244)
.+.+| ...|.+++|+|++++|++++.||.|++||+++..
T Consensus 329 ~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 329 MLKGH---YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EECCC---SSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred eeccC---CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 88888 8999999999999999999999999999998753
No 82
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-33 Score=235.06 Aligned_cols=207 Identities=14% Similarity=0.259 Sum_probs=182.0
Q ss_pred EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529 5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 84 (244)
+..|.++|.+++|+|++++|++++.||.|++|++.+ + +....+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 51 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~- 125 (814)
T 3mkq_A 51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--G--EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN- 125 (814)
T ss_dssp EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--C--CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEE-
T ss_pred EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC--C--cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEE-
Confidence 345789999999999999999999999999999977 5 67788899999999999999999999999999999999
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC--CCCE
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP--NNHL 161 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~ 161 (244)
+.++. .....+..|...+.+++|+| +++.|++++.|+.|++||++.... .......+...+..++|+| ++++
T Consensus 126 -~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~ 200 (814)
T 3mkq_A 126 -WENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYVDYYPLPDKPY 200 (814)
T ss_dssp -GGGTS-EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC---SEEEECCCTTCCCEEEECCSTTCCE
T ss_pred -CCCCc-eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---eeEEecCCCCCEEEEEEEECCCCCE
Confidence 55552 22344567889999999999 789999999999999999987765 2333344558899999999 9999
Q ss_pred EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
|++++.||.|++||+ ..++.+..+..| ...|.+++|+|++++|++++.||.|++||+.+
T Consensus 201 l~~~~~dg~i~~~d~------------------~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 201 MITASDDLTIKIWDY------------------QTKSCVATLEGH---MSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EEEECTTSEEEEEET------------------TTTEEEEEEECC---SSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEEEeCCCEEEEEEC------------------CCCcEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 999999999999998 667788888888 89999999999999999999999999999976
Q ss_pred C
Q psy11529 242 V 242 (244)
Q Consensus 242 ~ 242 (244)
.
T Consensus 260 ~ 260 (814)
T 3mkq_A 260 Y 260 (814)
T ss_dssp C
T ss_pred C
Confidence 3
No 83
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.2e-33 Score=209.67 Aligned_cols=222 Identities=16% Similarity=0.132 Sum_probs=174.3
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN 85 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 85 (244)
..|...|.+++|+|++++|++++.|+.|++|+... . ........+...+..+.+++++.+|++++.|+.+++||
T Consensus 83 ~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d-- 156 (340)
T 4aow_A 83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT--G--TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-- 156 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--T--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC--
T ss_pred eCCCCCEEEEEECCCCCEEEEEcccccceEEeecc--c--ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEE--
Confidence 34688999999999999999999999999999977 4 56666677888999999999999999999999999999
Q ss_pred CCCCCceeeEEEeccCcceEEEEECCCC--CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 86 NDDKKWKPTLVLLRINRAATCVKWSPLE--NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
..... ........|...+..++|++++ .++++++.|+.|++||++..+. ......|...|++++|+|++++|+
T Consensus 157 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~ 231 (340)
T 4aow_A 157 TLGVC-KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL----KTNHIGHTGYLNTVTVSPDGSLCA 231 (340)
T ss_dssp TTSCE-EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEE
T ss_pred eCCCc-eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce----eeEecCCCCcEEEEEECCCCCEEE
Confidence 54433 2334445678899999998874 5688999999999999988754 556677889999999999999999
Q ss_pred EeeCCCeEEEEEeeecccccC-------------CCCCCC-Cc--------cccccceeEEe---------cCCCCCCCC
Q psy11529 164 CGSTDFKVRVFSAYIKDIESA-------------PQSTNW-GS--------KSTLGNCLVEL---------NNSSSGGGW 212 (244)
Q Consensus 164 ~~~~dg~i~i~d~~~~~~~~~-------------~~~~~~-~~--------~~~~~~~~~~~---------~~~~~~~~~ 212 (244)
+|+.||.|++||++....... +..... .. .......+..+ ..| ...
T Consensus 232 s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h---~~~ 308 (340)
T 4aow_A 232 SGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE---PPQ 308 (340)
T ss_dssp EEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CC---CCC
T ss_pred EEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCC---CCC
Confidence 999999999999864432211 000000 00 01112222222 244 788
Q ss_pred eEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 213 IHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 213 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
|++++|+|||++|++|+.||.|+|||+++
T Consensus 309 v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 309 CTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 99999999999999999999999999875
No 84
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=4.1e-34 Score=210.40 Aligned_cols=203 Identities=14% Similarity=0.074 Sum_probs=148.5
Q ss_pred CCCceEEEEEcCC----CCeEEEecC--------------------CCeEEEeeeccCCCcceeeeeeccCCCceEEEEe
Q psy11529 8 GINPVTTHAWNNT----RQQLAFTPN--------------------NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW 63 (244)
Q Consensus 8 ~~~~v~~~~~~~~----~~~l~~~~~--------------------d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 63 (244)
+.+.|.+++++|| ++.+++++. |+.|++|++... + +.+..+.+|...+..++|
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d-G--~~~~s~~~~~~~v~~l~f 186 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED-G--GGKENQFLMPPEETILTF 186 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT-S--CEEEEEEECCCSSCEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC-C--ceeeeeccCCCceeeEEe
Confidence 3457888899998 777776542 788888888432 2 566677778888888888
Q ss_pred CC---CCCeEEEEeCCccEEEEeeeCCCCCceeeEEEecc---CcceEEEEECCCCCeE------------EEeeCCCeE
Q psy11529 64 AP---NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRI---NRAATCVKWSPLENKF------------AAGSGARLI 125 (244)
Q Consensus 64 ~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l------------~~~~~d~~i 125 (244)
+| ++.+|++++.|++|+||| +.+++....+. ++ ...+.+++|+|+|.++ ++|+.|+++
T Consensus 187 s~~~g~~~~LaSgS~D~TIkIWD--l~TGk~l~tL~--g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI 262 (356)
T 2w18_A 187 AEVQGMQEALLGTTIMNNIVIWN--LKTGQLLKKMH--IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL 262 (356)
T ss_dssp EEEETSTTEEEEEETTSEEEEEE--TTTCCEEEEEE--CCC---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred eccCCCCceEEEecCCCcEEEEE--CCCCcEEEEEc--CCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence 88 678999999999999999 88888655543 33 3467788999999876 567789999
Q ss_pred EEEEeecCCCceEEEee-ecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec
Q psy11529 126 SVCYFESENDWWVAKHI-KKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN 204 (244)
Q Consensus 126 ~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (244)
++||..++......... ..+|...+.+.++ ++.++++++.|++|+|||+ .+++++.++.
T Consensus 263 klWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl------------------~tGk~l~tL~ 322 (356)
T 2w18_A 263 IVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDL------------------LLGQCTALLP 322 (356)
T ss_dssp EEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEET------------------TTCSEEEEEC
T ss_pred EEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEEC------------------CCCcEEEEec
Confidence 99999877542111111 1344444444444 3789999999999999999 7899999999
Q ss_pred CCCCCCCC-eEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529 205 NSSSGGGW-IHSVAFSKDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 205 ~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 240 (244)
+| ... +..++|+|||++|++|+.|++|+|||+.
T Consensus 323 gH---~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 323 PV---SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp CC-----CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred CC---CCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 88 554 4568999999999999999999999963
No 85
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.2e-33 Score=220.07 Aligned_cols=212 Identities=18% Similarity=0.274 Sum_probs=174.9
Q ss_pred eCCCceEEEEEcCC-CCeEEEecCCCeEEEeeeccC------CCcceeeeeeccCCCceEEEEeCCCCC-eEEEEeCCcc
Q psy11529 7 FGINPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKA------ANDWSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRN 78 (244)
Q Consensus 7 ~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~ 78 (244)
.|.+.|++++|+|+ +++|++++.+|.|++|++... .+.......+.+|...|.+++|+|++. +|++++.||.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 45889999999997 679999999999999999641 011366778889999999999999888 9999999999
Q ss_pred EEEEeeeCCCCCc-----eeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeE
Q psy11529 79 AYVWTQNNDDKKW-----KPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITC 152 (244)
Q Consensus 79 i~iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 152 (244)
|++|| +..+.. ........|...|.+++|+| ++.+|++++.|+.|++||++...... .......|...|++
T Consensus 206 i~vwd--~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 206 ICLWD--INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-PSHTVDAHTAEVNC 282 (430)
T ss_dssp EEEEE--TTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS-CSEEEECCSSCEEE
T ss_pred EEEEe--CCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc-ceeEeecCCCCeEE
Confidence 99999 555321 11334457889999999999 67889999999999999999773100 12334577889999
Q ss_pred EEecCCCC-EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEeeC
Q psy11529 153 LDWHPNNH-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTSH 230 (244)
Q Consensus 153 ~~~~p~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~ 230 (244)
++|+|++. +|++|+.||.|++||++ .....+..+..| ...|.+++|+|+++ +|++++.
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~-----------------~~~~~~~~~~~h---~~~v~~i~~sp~~~~~l~s~~~ 342 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLR-----------------NLKLKLHSFESH---KDEIFQVQWSPHNETILASSGT 342 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETT-----------------CTTSCSEEEECC---SSCEEEEEECSSCTTEEEEEET
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCC-----------------CCCCCeEEeecC---CCCEEEEEECCCCCCEEEEEeC
Confidence 99999987 78899999999999994 224567788888 89999999999985 6899999
Q ss_pred CCcEEEEeCCC
Q psy11529 231 DGSINVRMSQQ 241 (244)
Q Consensus 231 dg~i~vwd~~~ 241 (244)
||.|++||++.
T Consensus 343 d~~i~iwd~~~ 353 (430)
T 2xyi_A 343 DRRLHVWDLSK 353 (430)
T ss_dssp TSCCEEEEGGG
T ss_pred CCcEEEEeCCC
Confidence 99999999976
No 86
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.9e-34 Score=216.15 Aligned_cols=208 Identities=17% Similarity=0.187 Sum_probs=167.2
Q ss_pred eCCCceEEEEEcCC---CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEE------eCCCCCeEEEEeCCc
Q psy11529 7 FGINPVTTHAWNNT---RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGID------WAPNTNRIVTCSADR 77 (244)
Q Consensus 7 ~~~~~v~~~~~~~~---~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~d~ 77 (244)
.|..+|.+++|+|+ +++|++++.|+.|++|++.. +. .....+.+|...|.+++ |+|++++|++++.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~ 139 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA--PE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG 139 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS--CS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTS
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC--CC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCC
Confidence 35789999999998 69999999999999999987 31 26778889999999995 578999999999999
Q ss_pred cEEEEeeeCCCCCceeeEEEecc----CcceEEEE----ECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCc
Q psy11529 78 NAYVWTQNNDDKKWKPTLVLLRI----NRAATCVK----WSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKST 149 (244)
Q Consensus 78 ~i~iwd~~~~~~~~~~~~~~~~~----~~~v~~~~----~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 149 (244)
.|++|| +.++... ...+..+ ...+.+++ |+|+++++++++.|+.|++||+++.+. .....+...
T Consensus 140 ~i~vwd--~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~ 211 (357)
T 3i2n_A 140 TVKVWD--PRQKDDP-VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNG 211 (357)
T ss_dssp CEEEEC--TTSCSSC-SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EEEEECSSC
T ss_pred eEEEEe--CCCCCCc-ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----eeecCCCCc
Confidence 999999 6665421 2222333 33788888 789999999999999999999988754 233556789
Q ss_pred eeEEEecC---CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EE
Q psy11529 150 ITCLDWHP---NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KL 225 (244)
Q Consensus 150 v~~~~~~p---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 225 (244)
+.+++|+| ++++|++++.||.|++||++..... .......+..| ...|.+++|+|+++ +|
T Consensus 212 v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------~~~~~~~~~~~---~~~v~~~~~~~~~~~~l 275 (357)
T 3i2n_A 212 VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-------------KGFASVSEKAH---KSTVWQVRHLPQNRELF 275 (357)
T ss_dssp EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-------------TEEEEEEEECC---SSCEEEEEEETTEEEEE
T ss_pred eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-------------cceeeeccCCC---cCCEEEEEECCCCCcEE
Confidence 99999999 8999999999999999999643211 00111234477 89999999999999 89
Q ss_pred EEeeCCCcEEEEeCCC
Q psy11529 226 CWTSHDGSINVRMSQQ 241 (244)
Q Consensus 226 ~~~~~dg~i~vwd~~~ 241 (244)
++++.||.|++||+++
T Consensus 276 ~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 276 LTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEEETTSEEEEEEEEC
T ss_pred EEEeCCCcEEEeecCC
Confidence 9999999999999874
No 87
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.1e-33 Score=213.70 Aligned_cols=209 Identities=13% Similarity=0.064 Sum_probs=170.0
Q ss_pred eCCCceEEEEEcCCCC-eEEEecCCCeEEEeee-ccCCCcceeeeeecc--CCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529 7 FGINPVTTHAWNNTRQ-QLAFTPNNQEVHLYQY-EKAANDWSQLDVLDG--HDLKVTGIDWAPNTNRIVTCSADRNAYVW 82 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~-~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 82 (244)
.|...|.+++|+|+++ +|++++.||.|++|++ .. .....+.+ |...|.+++|+| +.+|++++.|+.|++|
T Consensus 54 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-----~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iw 127 (342)
T 1yfq_A 54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS-----PSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVI 127 (342)
T ss_dssp ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS-----SSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEE
T ss_pred ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccC-----CceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEE
Confidence 4688999999999999 9999999999999999 77 34477788 999999999999 9999999999999999
Q ss_pred eeeCCC---------CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeec-CCCceEEEeeecCCCCceeE
Q psy11529 83 TQNNDD---------KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFES-ENDWWVAKHIKKPIKSTITC 152 (244)
Q Consensus 83 d~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~ 152 (244)
| +.+ ++.... ..+...+.+++|+|++ +++++.++.|++||++. ... ........+...+.+
T Consensus 128 d--~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~i~~ 198 (342)
T 1yfq_A 128 D--PRNYGDGVIAVKNLNSNN---TKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD--NGTIEESGLKYQIRD 198 (342)
T ss_dssp C--HHHHTTBCEEEEESCSSS---SSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC--CCEEEECSCSSCEEE
T ss_pred c--ccccccccccccCCeeeE---EeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc--cceeeecCCCCceeE
Confidence 9 444 332222 2377899999999987 99999999999999988 543 123345567789999
Q ss_pred EEecC-CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC------CCCCeEEEEEecCCCEE
Q psy11529 153 LDWHP-NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS------GGGWIHSVAFSKDGNKL 225 (244)
Q Consensus 153 ~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l 225 (244)
++|+| +++++++++.||.|++|+++..... ...+....+..|.. +...|.+++|+|++++|
T Consensus 199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 266 (342)
T 1yfq_A 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDD------------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL 266 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECCTTCCS------------TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCE
T ss_pred EEECCCCCCEEEEEecCCcEEEEEEcCCCcc------------cccccceeeecccccccccccceeEEEEEEcCCCCEE
Confidence 99999 9999999999999999998432000 00255566666510 02389999999999999
Q ss_pred EEeeCCCcEEEEeCCCC
Q psy11529 226 CWTSHDGSINVRMSQQV 242 (244)
Q Consensus 226 ~~~~~dg~i~vwd~~~~ 242 (244)
++++.||.|++||+++.
T Consensus 267 ~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 267 YTAGSDGIISCWNLQTR 283 (342)
T ss_dssp EEEETTSCEEEEETTTT
T ss_pred EEecCCceEEEEcCccH
Confidence 99999999999999854
No 88
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=223.42 Aligned_cols=207 Identities=10% Similarity=0.159 Sum_probs=161.5
Q ss_pred CceEEEEEcCCC--CeEEEecCCCeEEEeeeccCCCcce-------------------------------------eeee
Q psy11529 10 NPVTTHAWNNTR--QQLAFTPNNQEVHLYQYEKAANDWS-------------------------------------QLDV 50 (244)
Q Consensus 10 ~~v~~~~~~~~~--~~l~~~~~d~~v~v~~~~~~~~~~~-------------------------------------~~~~ 50 (244)
++|.+++|+|++ .+|++++.|+.|++|++.. +... ....
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISE--RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEE--EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEeccc--ccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 789999999998 7899999999999999865 2110 0112
Q ss_pred -eccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC-CceeeE-----EEeccCcceEEEEECCCC-CeEEEeeCC
Q psy11529 51 -LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK-KWKPTL-----VLLRINRAATCVKWSPLE-NKFAAGSGA 122 (244)
Q Consensus 51 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~-----~~~~~~~~v~~~~~~~~~-~~l~~~~~d 122 (244)
..+|...|.+++|+|++++|+++ .|+.|++|| +... ...... .+..|...|.+++|+|++ ++|++++.|
T Consensus 172 ~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 248 (447)
T 3dw8_B 172 FANAHTYHINSISINSDYETYLSA-DDLRINLWH--LEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK 248 (447)
T ss_dssp ECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEE--TTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT
T ss_pred eccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEE--CCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC
Confidence 36799999999999999999998 799999999 5532 211111 134688899999999998 999999999
Q ss_pred CeEEEEEeecCCCceEEEeeecCCCC------------ceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCC
Q psy11529 123 RLISVCYFESENDWWVAKHIKKPIKS------------TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNW 190 (244)
Q Consensus 123 ~~i~i~d~~~~~~~~~~~~~~~~~~~------------~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 190 (244)
+.|++||++..............+.. .|.+++|+|++++|++++. +.|++||++.
T Consensus 249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~------------ 315 (447)
T 3dw8_B 249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM------------ 315 (447)
T ss_dssp SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC------------
T ss_pred CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC------------
Confidence 99999999887631111233444443 8999999999999999999 9999999931
Q ss_pred CccccccceeEEecCCCCCCC---------------CeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 191 GSKSTLGNCLVELNNSSSGGG---------------WIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
.++++..+..| .. .+..++|+|++++|++++.||.|++||+++.
T Consensus 316 -----~~~~~~~~~~~---~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 316 -----ENRPVETYQVH---EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp -----CSSCSCCEESC---GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred -----Cccccceeecc---ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 25566666665 32 1335999999999999999999999999754
No 89
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.3e-33 Score=217.90 Aligned_cols=204 Identities=20% Similarity=0.265 Sum_probs=168.8
Q ss_pred eEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEeeeCCCC
Q psy11529 12 VTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQNNDDK 89 (244)
Q Consensus 12 v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 89 (244)
...++++|+...++ +++.+|.|+||++...+........+.+|...|.+++|+| ++++|++++.|+.|++|| +.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~--~~~~ 114 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE--IPDG 114 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE--CCTT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE--ccCC
Confidence 34577888765444 4688999999998652211134556788999999999999 999999999999999999 6665
Q ss_pred Cc-----eeeEEEeccCcceEEEEECCCC-CeEEEeeCCCeEEEEEeecCCCceEEEeee--cCCCCceeEEEecCCCCE
Q psy11529 90 KW-----KPTLVLLRINRAATCVKWSPLE-NKFAAGSGARLISVCYFESENDWWVAKHIK--KPIKSTITCLDWHPNNHL 161 (244)
Q Consensus 90 ~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~ 161 (244)
.. .....+.+|...|.+++|+|++ ++|++++.|+.|++||+++++. .... ..|...|.+++|+|++++
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA----VLTLGPDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE----EEEECTTTCCSCEEEEEECTTSSC
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc----cEEEecCCCCCceEEEEECCCCCE
Confidence 32 2345567899999999999997 6999999999999999998754 3344 678899999999999999
Q ss_pred EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe-cCCCCCCCC-eEEEEEecCCCEEEEe---eCCCcEEE
Q psy11529 162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL-NNSSSGGGW-IHSVAFSKDGNKLCWT---SHDGSINV 236 (244)
Q Consensus 162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-v~~~~~s~~~~~l~~~---~~dg~i~v 236 (244)
|++++.||.|++||+ ..++.+..+ ..| ... +.+++|+|++++|++| +.|+.|++
T Consensus 191 l~~~~~d~~i~iwd~------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~i 249 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEP------------------RKGTVVAEKDRPH---EGTRPVHAVFVSEGKILTTGFSRMSERQVAL 249 (402)
T ss_dssp EEEEETTSEEEEEET------------------TTTEEEEEEECSS---CSSSCCEEEECSTTEEEEEEECTTCCEEEEE
T ss_pred EEEEecCCcEEEEeC------------------CCCceeeeeccCC---CCCcceEEEEcCCCcEEEEeccCCCCceEEE
Confidence 999999999999999 567777777 666 544 8999999999999999 78999999
Q ss_pred EeCCCC
Q psy11529 237 RMSQQV 242 (244)
Q Consensus 237 wd~~~~ 242 (244)
||+++.
T Consensus 250 wd~~~~ 255 (402)
T 2aq5_A 250 WDTKHL 255 (402)
T ss_dssp EETTBC
T ss_pred EcCccc
Confidence 999864
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.6e-33 Score=214.90 Aligned_cols=206 Identities=17% Similarity=0.145 Sum_probs=166.5
Q ss_pred CCceEEEEEc----CCCCe-EEEecCCCeEEEeeeccCCC--cceeee-----ee-------ccCCCceEEEEeCCCCCe
Q psy11529 9 INPVTTHAWN----NTRQQ-LAFTPNNQEVHLYQYEKAAN--DWSQLD-----VL-------DGHDLKVTGIDWAPNTNR 69 (244)
Q Consensus 9 ~~~v~~~~~~----~~~~~-l~~~~~d~~v~v~~~~~~~~--~~~~~~-----~~-------~~~~~~v~~~~~~~~~~~ 69 (244)
...|.+++|+ |++++ |++++.|+.|++||+..... ....+. .+ ..|...|.+++|+|++ +
T Consensus 121 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 199 (397)
T 1sq9_A 121 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L 199 (397)
T ss_dssp GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred CCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e
Confidence 4899999999 99999 99999999999999865000 002222 55 4488999999999999 9
Q ss_pred EEEEeCCccEEEEeeeCCCCCceeeEEEec---c---CcceEEEEECCCCCeEEEeeCC---CeEEEEEeecCCCceEEE
Q psy11529 70 IVTCSADRNAYVWTQNNDDKKWKPTLVLLR---I---NRAATCVKWSPLENKFAAGSGA---RLISVCYFESENDWWVAK 140 (244)
Q Consensus 70 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~ 140 (244)
+++++.|+.|++|| +.+++. ...+.. | ...+.+++|+|++++|++++.| +.|++||+++.+. .
T Consensus 200 l~~~~~dg~i~i~d--~~~~~~--~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~----~ 271 (397)
T 1sq9_A 200 IATGFNNGTVQISE--LSTLRP--LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER----I 271 (397)
T ss_dssp EEEECTTSEEEEEE--TTTTEE--EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE----E
T ss_pred EEEEeCCCcEEEEE--CCCCce--eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc----c
Confidence 99999999999999 676653 334445 6 8899999999999999999999 9999999998764 3
Q ss_pred eeecC-------------CCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec---
Q psy11529 141 HIKKP-------------IKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN--- 204 (244)
Q Consensus 141 ~~~~~-------------~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 204 (244)
..... |...|.+++|+|++++|++++.||.|++||+ ..++.+..+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~------------------~~~~~~~~~~~~~ 333 (397)
T 1sq9_A 272 GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV------------------KTKERITTLNMHC 333 (397)
T ss_dssp EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET------------------TTTEEEEEEECCG
T ss_pred ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc------------------CCCceeEEEeccc
Confidence 33444 7889999999999999999999999999999 4566666666
Q ss_pred ---CC------------CCCCCCeEEEEEecCC----------CEEEEeeCCCcEEEEeCCC
Q psy11529 205 ---NS------------SSGGGWIHSVAFSKDG----------NKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 205 ---~~------------~~~~~~v~~~~~s~~~----------~~l~~~~~dg~i~vwd~~~ 241 (244)
.| ..+...|.+++|+|++ ++|++++.||.|++||+++
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp GGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred CcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 33 0006789999999998 7999999999999999875
No 91
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-33 Score=219.59 Aligned_cols=206 Identities=8% Similarity=0.041 Sum_probs=166.9
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCc-ceeeeeec------------------------------------
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAND-WSQLDVLD------------------------------------ 52 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~-~~~~~~~~------------------------------------ 52 (244)
.++.+++|+|+|++|+++ .++.|++||+.+ ++ .+.+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQS--PNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEET--TTEEEEEEEEECCC---------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCC--CCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 578999999999977666 578999999876 32 11333332
Q ss_pred ------------------cCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeCC--CCCceeeEEEeccCcceEEEEECC
Q psy11529 53 ------------------GHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNND--DKKWKPTLVLLRINRAATCVKWSP 111 (244)
Q Consensus 53 ------------------~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~v~~~~~~~ 111 (244)
+|...|.+++|+|++++| ++++.|+.|++|| +. +++....+....+...+.+++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd--~~~~~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFD--VDKTSKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEE--ECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEE--CcCCCCceeeeeecccCCCCceEEEEcC
Confidence 234479999999999996 8898999999999 55 666555554446778999999999
Q ss_pred CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC---CCEEEEeeCCCeEEEEEeeecccccCCCCC
Q psy11529 112 LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN---NHLLGCGSTDFKVRVFSAYIKDIESAPQST 188 (244)
Q Consensus 112 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 188 (244)
++++|++++.++.+++|++...............|...|.+++|+|+ +++|++++.|+.|++||+
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~------------ 227 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY------------ 227 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE------------
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC------------
Confidence 99999999999999999998765411012244567789999999999 999999999999999999
Q ss_pred CCCccccccceeEE-ecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 189 NWGSKSTLGNCLVE-LNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 189 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
..++.+.. +.+| ...|.+++|+ ++++|++++.|+.|++||+++.
T Consensus 228 ------~~~~~~~~~~~~h---~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 228 ------PQCFIVDKWLFGH---KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG 272 (450)
T ss_dssp ------SCTTCEEEECCCC---SSCEEEEEEC-STTEEEEEESSSEEEEEETTTC
T ss_pred ------CCCceeeeeecCC---CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC
Confidence 55666666 4577 8999999999 9999999999999999999864
No 92
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.3e-33 Score=213.72 Aligned_cols=199 Identities=16% Similarity=0.271 Sum_probs=171.2
Q ss_pred CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND 87 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 87 (244)
+...|.+++|+|++++|++|+.||.|++|++.+ + +.+..+.+|...|.+++|+ +.+|++++.|+.|++|| +.
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d--~~ 204 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES--Q--TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHD--VR 204 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--C--CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE--TT
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcC--C--eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEe--cc
Confidence 578999999999999999999999999999977 4 6778888999999999994 67999999999999999 55
Q ss_pred CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC-EEEEee
Q psy11529 88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH-LLGCGS 166 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~ 166 (244)
.... ....+..|...+.+++|+|++++|++++.|+.|++||+++... ......|...|.+++|+|++. ++++++
T Consensus 205 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~ll~~~~ 279 (401)
T 4aez_A 205 IANH-QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP----KFTKTNHNAAVKAVAWCPWQSNLLATGG 279 (401)
T ss_dssp SSSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE----EEEECCCSSCCCEEEECTTSTTEEEEEC
T ss_pred cCcc-eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc----cEEecCCcceEEEEEECCCCCCEEEEec
Confidence 3322 2444567899999999999999999999999999999998764 445567889999999999775 666654
Q ss_pred --CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEE--eeCCCcEEEEeCCC
Q psy11529 167 --TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCW--TSHDGSINVRMSQQ 241 (244)
Q Consensus 167 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~vwd~~~ 241 (244)
.|+.|++||+ ..++.+..+.. ...+.+++|+|++++|++ |+.||.|++||+++
T Consensus 280 gs~d~~i~i~d~------------------~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 280 GTMDKQIHFWNA------------------ATGARVNTVDA----GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp CTTTCEEEEEET------------------TTCCEEEEEEC----SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred CCCCCEEEEEEC------------------CCCCEEEEEeC----CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 7999999999 66777777764 678999999999999998 44899999999876
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-32 Score=212.98 Aligned_cols=203 Identities=19% Similarity=0.276 Sum_probs=167.2
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
.|...|.+++| +++.|++++.|+.|++||+... . .....+.+|...|.+++|+|++++|++++.|+.|++|| +
T Consensus 174 ~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd--~ 246 (401)
T 4aez_A 174 GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA-N--HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD--A 246 (401)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS-S--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE--T
T ss_pred CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccC-c--ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEcc--C
Confidence 46889999999 4579999999999999999742 2 56778889999999999999999999999999999999 6
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCC-eEEEee--CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLEN-KFAAGS--GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
.+++. ...+..|...+.+++|+|++. .+++++ .|+.|++||+++++. .... .+...+.+++|+|++++++
T Consensus 247 ~~~~~--~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~----~~~~-~~~~~v~~~~~s~~~~~l~ 319 (401)
T 4aez_A 247 RSSIP--KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR----VNTV-DAGSQVTSLIWSPHSKEIM 319 (401)
T ss_dssp TCSSE--EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE----EEEE-ECSSCEEEEEECSSSSEEE
T ss_pred CCCCc--cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE----EEEE-eCCCcEEEEEECCCCCeEE
Confidence 76653 344567889999999999765 455544 699999999998765 2222 3457899999999999999
Q ss_pred E--eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 164 C--GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 164 ~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
+ |+.||.|++||+.... ......+.+| ...|.+++|+|++++|++++.||.|++||+.+
T Consensus 320 ~~~g~~dg~i~v~~~~~~~----------------~~~~~~~~~h---~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSSG----------------LTKQVDIPAH---DTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEECTTTCEEEEEEEETTE----------------EEEEEEEECC---SSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred EEeecCCCcEEEEecCCcc----------------ceeEEEecCC---CCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 9 4489999999994211 2334456677 89999999999999999999999999999976
Q ss_pred C
Q psy11529 242 V 242 (244)
Q Consensus 242 ~ 242 (244)
.
T Consensus 381 ~ 381 (401)
T 4aez_A 381 G 381 (401)
T ss_dssp -
T ss_pred C
Confidence 3
No 94
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=217.99 Aligned_cols=196 Identities=14% Similarity=0.073 Sum_probs=159.6
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC-----ceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL-----KVTGIDWAPNTNRIVTCSADRNAYVWT 83 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd 83 (244)
.+.|.+++|||+|++||+++.||.|++|+.++ ++..+. |.. .|.+++|||+|++|++|+.||+|++||
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 67899999999999999999999999999533 555566 665 599999999999999999999999999
Q ss_pred eeCCCCCc-----eeeEEE----eccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEE
Q psy11529 84 QNNDDKKW-----KPTLVL----LRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLD 154 (244)
Q Consensus 84 ~~~~~~~~-----~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 154 (244)
..++.. .....+ .+|...|.+++|+|+| +++++.|+.+++||+..+............|...|.+++
T Consensus 158 --~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 158 --IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp --CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred --CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 666643 122333 4567899999999999 888899999999999887641111223346778999999
Q ss_pred ecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEE--ecCCCEEEEeeCCC
Q psy11529 155 WHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAF--SKDGNKLCWTSHDG 232 (244)
Q Consensus 155 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg 232 (244)
|+ |+.||+++ +++|++||+ ..++......+| ...+..++| +||+..|++++.||
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~------------------~~~~~~~~~~gh---~~~V~~va~~~s~d~~~La~a~edG 289 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDL------------------KNYSISSLKTGS---LENFHIIPLNHEKESTILLMSNKTS 289 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEET------------------TTTEEEEEECSC---CSCCCEEEETTCSSCEEEEECSSCE
T ss_pred EE--CCEEEEEe-CCeEEEEEC------------------CCCeEEEEEcCC---CceEEEEEeeeCCCCCEEEEEcCCC
Confidence 99 68899887 699999998 444443333377 899999999 99999999999999
Q ss_pred cEEEEeCC
Q psy11529 233 SINVRMSQ 240 (244)
Q Consensus 233 ~i~vwd~~ 240 (244)
+ ++|..+
T Consensus 290 ~-klw~~d 296 (588)
T 2j04_A 290 Y-KVLLED 296 (588)
T ss_dssp E-EEEESS
T ss_pred C-EEEeec
Confidence 9 999875
No 95
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-32 Score=238.64 Aligned_cols=222 Identities=14% Similarity=0.228 Sum_probs=182.2
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN 85 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 85 (244)
..|.+.|++++|+|+|++|++|+.||.|++|++.+ + +.+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~--~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd-- 685 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET--G--EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD-- 685 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--C--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE--
T ss_pred ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC--C--CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE--
Confidence 34789999999999999999999999999999977 5 67888999999999999999999999999999999999
Q ss_pred CCCCCceeeEEEeccCcceEEEEECC--CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 86 NDDKKWKPTLVLLRINRAATCVKWSP--LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
..+++.. ..+..|...+.+++|+| ++..+++++.|+.|++||++++.. ......|...|.+++|+|++++++
T Consensus 686 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~ 759 (1249)
T 3sfz_A 686 SATGKLV--HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC----RNTMFGHTNSVNHCRFSPDDELLA 759 (1249)
T ss_dssp TTTCCEE--EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE----EEEECCCSSCEEEEEECSSTTEEE
T ss_pred CCCCceE--EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch----hheecCCCCCEEEEEEecCCCEEE
Confidence 7777643 44567999999999999 456899999999999999998864 455678889999999999999999
Q ss_pred EeeCCCeEEEEEeeecccccCCC--------------------CCCCCc----------------cccccceeEEec-CC
Q psy11529 164 CGSTDFKVRVFSAYIKDIESAPQ--------------------STNWGS----------------KSTLGNCLVELN-NS 206 (244)
Q Consensus 164 ~~~~dg~i~i~d~~~~~~~~~~~--------------------~~~~~~----------------~~~~~~~~~~~~-~~ 206 (244)
+++.||.|++||++......... ...+.. ....+.....+. +|
T Consensus 760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~ 839 (1249)
T 3sfz_A 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH 839 (1249)
T ss_dssp EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence 99999999999986543211000 000000 111223333333 55
Q ss_pred CCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 207 SSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 207 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
...+.+++|+|+++++++++.||.|++||+++.
T Consensus 840 ---~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~ 872 (1249)
T 3sfz_A 840 ---HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR 872 (1249)
T ss_dssp ---SSCCCEEEECSSTTEEEEECSSSCEEEEETTTT
T ss_pred ---CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Confidence 789999999999999999999999999998753
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.8e-33 Score=210.68 Aligned_cols=205 Identities=16% Similarity=0.116 Sum_probs=169.0
Q ss_pred eEEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCc-ceeeeeeccCCCceEEEEeCCCCC-eEEEEeCCccEEE
Q psy11529 4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAND-WSQLDVLDGHDLKVTGIDWAPNTN-RIVTCSADRNAYV 81 (244)
Q Consensus 4 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i 81 (244)
+...|.+.|++++|+|++++|++++.|+.|++|++.. +. ......+.+|...|.+++|+|+++ +|++++.|+.|++
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI--QAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEET--TTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCC--CCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 3345789999999999999999999999999999976 31 123455568999999999999999 9999999999999
Q ss_pred EeeeC-CCCCceeeEEEec--cCcceEEEEECCCCCeEEEeeCCCeEEEEEeec---------CCCceEEEeeecCCCCc
Q psy11529 82 WTQNN-DDKKWKPTLVLLR--INRAATCVKWSPLENKFAAGSGARLISVCYFES---------ENDWWVAKHIKKPIKST 149 (244)
Q Consensus 82 wd~~~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~ 149 (244)
|| + .+++ ...+.. |...|.+++|+| +++|++++.|+.|++||++. .+. ... ..+...
T Consensus 84 wd--~~~~~~---~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~-~~~~~~ 152 (342)
T 1yfq_A 84 VD--LIGSPS---FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN----SNN-TKVKNK 152 (342)
T ss_dssp EC--SSSSSS---EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC----SSS-SSSCCC
T ss_pred EE--eccCCc---eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe----eeE-EeeCCc
Confidence 99 7 6665 345566 899999999999 99999999999999999987 443 112 237789
Q ss_pred eeEEEecCCCCEEEEeeCCCeEEEEEeee-cccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec-CCCEEEE
Q psy11529 150 ITCLDWHPNNHLLGCGSTDFKVRVFSAYI-KDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK-DGNKLCW 227 (244)
Q Consensus 150 v~~~~~~p~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~ 227 (244)
+.+++|+|++ +++++.|+.|++||++. .. .........+ ...+.+++|+| ++++|++
T Consensus 153 v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~----------------~~~~~~~~~~---~~~i~~i~~~~~~~~~l~~ 211 (342)
T 1yfq_A 153 IFTMDTNSSR--LIVGMNNSQVQWFRLPLCED----------------DNGTIEESGL---KYQIRDVALLPKEQEGYAC 211 (342)
T ss_dssp EEEEEECSSE--EEEEESTTEEEEEESSCCTT----------------CCCEEEECSC---SSCEEEEEECSGGGCEEEE
T ss_pred eEEEEecCCc--EEEEeCCCeEEEEECCcccc----------------ccceeeecCC---CCceeEEEECCCCCCEEEE
Confidence 9999999987 89999999999999842 11 1122233345 78899999999 9999999
Q ss_pred eeCCCcEEEEeCCCC
Q psy11529 228 TSHDGSINVRMSQQV 242 (244)
Q Consensus 228 ~~~dg~i~vwd~~~~ 242 (244)
++.||.|++|+++..
T Consensus 212 ~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 212 SSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EETTSEEEEEECCTT
T ss_pred EecCCcEEEEEEcCC
Confidence 999999999998753
No 97
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.7e-33 Score=224.78 Aligned_cols=205 Identities=12% Similarity=0.107 Sum_probs=175.7
Q ss_pred CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCc-eEEEEeCC--CCCeEEEEeCCccEEEEee
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLK-VTGIDWAP--NTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~d~~i~iwd~ 84 (244)
+.+.|.+++|+|++++|++++ ++.|++|++.+.....+....+.+|... |.+++|+| ++++|++++.|+.|++||
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~- 94 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG- 94 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE-
T ss_pred ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe-
Confidence 478899999999999999998 7899999998621122467788999999 99999999 999999999999999999
Q ss_pred eCCCC------CceeeEEEeccCcceEEEEECCCCCeEEEeeCC----CeEEEEEeecCCCceEEEeeecCCCCceeEEE
Q psy11529 85 NNDDK------KWKPTLVLLRINRAATCVKWSPLENKFAAGSGA----RLISVCYFESENDWWVAKHIKKPIKSTITCLD 154 (244)
Q Consensus 85 ~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 154 (244)
+.++ .......+..|...+.+++|+|++++|++++.+ +.|.+|| .++ .......|...|.+++
T Consensus 95 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~----~~~~~~~~~~~v~~~~ 167 (615)
T 1pgu_A 95 -WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGN----SLGEVSGHSQRINACH 167 (615)
T ss_dssp -EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCC----EEEECCSCSSCEEEEE
T ss_pred -CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCC----cceeeecCCccEEEEE
Confidence 5444 333445556788999999999999999999987 6788877 333 3455677889999999
Q ss_pred ecCCCC-EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCC---CeEEEEEecC-CCEEEEee
Q psy11529 155 WHPNNH-LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGG---WIHSVAFSKD-GNKLCWTS 229 (244)
Q Consensus 155 ~~p~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~ 229 (244)
|+|+++ ++++++.|+.|++||+ ..++.+..+..| .. .|.+++|+|+ +++|++++
T Consensus 168 ~~~~~~~~l~~~~~d~~v~vwd~------------------~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~ 226 (615)
T 1pgu_A 168 LKQSRPMRSMTVGDDGSVVFYQG------------------PPFKFSASDRTH---HKQGSFVRDVEFSPDSGEFVITVG 226 (615)
T ss_dssp ECSSSSCEEEEEETTTEEEEEET------------------TTBEEEEEECSS---SCTTCCEEEEEECSTTCCEEEEEE
T ss_pred ECCCCCcEEEEEeCCCcEEEEeC------------------CCcceeeeeccc---CCCCceEEEEEECCCCCCEEEEEe
Confidence 999998 8999999999999998 677888888888 77 8999999999 99999999
Q ss_pred CCCcEEEEeCCCC
Q psy11529 230 HDGSINVRMSQQV 242 (244)
Q Consensus 230 ~dg~i~vwd~~~~ 242 (244)
.||.|++||+++.
T Consensus 227 ~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 227 SDRKISCFDGKSG 239 (615)
T ss_dssp TTCCEEEEETTTC
T ss_pred CCCeEEEEECCCC
Confidence 9999999998764
No 98
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-32 Score=203.27 Aligned_cols=199 Identities=10% Similarity=0.048 Sum_probs=169.6
Q ss_pred EEeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529 5 YSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 5 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 84 (244)
+..|.++|++++| |++++|++++.||.|++|++.+ + .....+..|...|.+++|+|++++|++++.|+.+++|++
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD--Q--WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS--S--EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC--C--EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 4457899999999 9999999999999999999977 4 667788889999999999999999999999999999994
Q ss_pred eCCCC-CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC-CCCEE
Q psy11529 85 NNDDK-KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP-NNHLL 162 (244)
Q Consensus 85 ~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l 162 (244)
... .......+..|...+.+++| +++++++++.|+.|++|| ... .......|...+.+++|+| +++++
T Consensus 89 --~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~----~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 89 --FATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGS----LVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp --TCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTE----EEEEEECCSSCEEEEEEEETTTTEE
T ss_pred --eecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCc----EEEecccCCCceeEEEEccCCCCEE
Confidence 433 22234455678999999999 577999999999999999 222 3455567889999999998 89999
Q ss_pred EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC-CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN-SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
++++.||.|++||. .+....+.. | ...+.+++|+|++. +++++.||.|++||+++
T Consensus 159 ~~~~~d~~i~i~d~--------------------~~~~~~~~~~~---~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~ 214 (313)
T 3odt_A 159 LTASADKTIKLWQN--------------------DKVIKTFSGIH---NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT 214 (313)
T ss_dssp EEEETTSCEEEEET--------------------TEEEEEECSSC---SSCEEEEEEEETTE-EEEEETTSEEEEEETTT
T ss_pred EEEECCCCEEEEec--------------------CceEEEEeccC---cccEEEEEEcCCCe-EEEccCCCeEEEEECCc
Confidence 99999999999995 455666666 5 88999999999998 88999999999999986
Q ss_pred C
Q psy11529 242 V 242 (244)
Q Consensus 242 ~ 242 (244)
.
T Consensus 215 ~ 215 (313)
T 3odt_A 215 G 215 (313)
T ss_dssp C
T ss_pred h
Confidence 4
No 99
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.1e-32 Score=214.87 Aligned_cols=201 Identities=20% Similarity=0.161 Sum_probs=173.6
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeC--CCCCeEEEEeCCccEEEEe
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA--PNTNRIVTCSADRNAYVWT 83 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd 83 (244)
..|.++|.+++|+|++ +|++|+.||.|++||+.+ + +....+.+|...|.+++|+ +++.++++++.|+.|++||
T Consensus 159 ~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~--~--~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd 233 (464)
T 3v7d_B 159 SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK--G--CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233 (464)
T ss_dssp CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC--C--cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence 3478999999999988 999999999999999987 5 7788899999999999998 5778999999999999999
Q ss_pred eeCCCCCcee---------------------eEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEee
Q psy11529 84 QNNDDKKWKP---------------------TLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHI 142 (244)
Q Consensus 84 ~~~~~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 142 (244)
+.++.... .....+|...+.++ +++++++++++.|+.|++||+++.+. ...
T Consensus 234 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~----~~~ 305 (464)
T 3v7d_B 234 --LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC----LYI 305 (464)
T ss_dssp --CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE----EEE
T ss_pred --CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE----EEE
Confidence 55543221 22345667777776 56788999999999999999987754 455
Q ss_pred ecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC
Q psy11529 143 KKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG 222 (244)
Q Consensus 143 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 222 (244)
...|...+.+++|+|+++++++|+.||.|++||+ .+++++..+.+| ...|.+++|+ +
T Consensus 306 ~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~------------------~~~~~~~~~~~h---~~~v~~~~~~--~ 362 (464)
T 3v7d_B 306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL------------------ENGELMYTLQGH---TALVGLLRLS--D 362 (464)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET------------------TTTEEEEEECCC---SSCEEEEEEC--S
T ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC------------------CCCcEEEEEeCC---CCcEEEEEEc--C
Confidence 6778899999999999999999999999999999 678889999998 8999999997 5
Q ss_pred CEEEEeeCCCcEEEEeCCCC
Q psy11529 223 NKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 223 ~~l~~~~~dg~i~vwd~~~~ 242 (244)
++|++++.||.|++||+++.
T Consensus 363 ~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 363 KFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp SEEEEEETTSEEEEEETTTC
T ss_pred CEEEEEeCCCcEEEEECCCC
Confidence 79999999999999999864
No 100
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-33 Score=217.81 Aligned_cols=225 Identities=9% Similarity=0.025 Sum_probs=162.8
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccC-CCcceeeeeec----------c--CCCceEEEE--eCCCCCeEE
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKA-ANDWSQLDVLD----------G--HDLKVTGID--WAPNTNRIV 71 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~-~~~~~~~~~~~----------~--~~~~v~~~~--~~~~~~~l~ 71 (244)
-|.++|.+++|+|++++|++++.|+.|++||+... .+ +....+. . +...+.++. +++++.+|+
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQE--SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEET--TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCC--ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence 36899999999999999999999999999999520 02 2222221 1 456677776 567899999
Q ss_pred EEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCcee
Q psy11529 72 TCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTIT 151 (244)
Q Consensus 72 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 151 (244)
+++.|+.|++|| +.+++....+....|...|.+++|+|++++|++++.|+.|++||++.++. .......+...|.
T Consensus 187 ~~~~d~~i~iwd--~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~ 261 (437)
T 3gre_A 187 ALTNLSRVIIFD--IRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL---IRSWSFGDHAPIT 261 (437)
T ss_dssp EEETTSEEEEEE--TTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE---EEEEBCTTCEEEE
T ss_pred EEeCCCeEEEEe--CCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE---EEEEecCCCCceE
Confidence 999999999999 77777554444333789999999999999999999999999999998653 2333336777999
Q ss_pred EEEec----CCCCEEEEeeCCCeEEEEEeeecccccCCCCC---CC-Ccccccccee--EEecC--CCCCCCCeEEEEEe
Q psy11529 152 CLDWH----PNNHLLGCGSTDFKVRVFSAYIKDIESAPQST---NW-GSKSTLGNCL--VELNN--SSSGGGWIHSVAFS 219 (244)
Q Consensus 152 ~~~~~----p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~-~~~~~~~~~~--~~~~~--~~~~~~~v~~~~~s 219 (244)
+++|+ |++++|++++.||.|++||++........... .. ......++.+ ..+.+ | ...|++++|+
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~v~~l~~~ 338 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS---LNALSTISVS 338 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS---GGGGCCEEEE
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc---CCceEEEEEC
Confidence 99555 56889999999999999999533221100000 00 0000000000 01122 4 6779999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 220 KDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 220 ~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
++++|++++.||.|++||+++.
T Consensus 339 -~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 339 -NDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp -TTEEEEEEGGGTEEEEEETTCG
T ss_pred -CceEEEecCCCCeEEEEECCCc
Confidence 8899999999999999999763
No 101
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2e-32 Score=208.69 Aligned_cols=162 Identities=12% Similarity=0.014 Sum_probs=127.2
Q ss_pred CceEEEEeCCCCCeEEEE--eCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecC
Q psy11529 56 LKVTGIDWAPNTNRIVTC--SADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESE 133 (244)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 133 (244)
..+.+++|+|||++++++ +.|++|+||| .++++.... ..|...|.+++|+|+|+++++++.++ +.+|+..++
T Consensus 134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd--~~~~~~~~~---~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~ 207 (365)
T 4h5i_A 134 DYTKLVYISREGTVAAIASSKVPAIMRIID--PSDLTEKFE---IETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTG 207 (365)
T ss_dssp CCEEEEEECTTSSCEEEEESCSSCEEEEEE--TTTTEEEEE---EECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTC
T ss_pred cCEEEEEEcCCCCEEEEEECCCCCEEEEeE--CCCCcEEEE---eCCCCceEEEEEccCCceEEecccee-EEEEEeccC
Confidence 347789999999998754 4689999999 777764333 34778899999999999999998655 666666666
Q ss_pred CCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC----eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCC
Q psy11529 134 NDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF----KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSG 209 (244)
Q Consensus 134 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (244)
.. ........|...+.+++|+|+++++++++.|+ .+++|++.... ........+..|
T Consensus 208 ~~--~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~--------------~~~~~~~~~~~~--- 268 (365)
T 4h5i_A 208 SC--IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN--------------TSVLRSKQVTNR--- 268 (365)
T ss_dssp CE--EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE--------------EEEEEEEEEESS---
T ss_pred cc--eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce--------------ecceeeeeecCC---
Confidence 53 23344556778999999999999999998887 68888874221 112234556777
Q ss_pred CCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 210 GGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 210 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
...|++++|+|||++||+|+.|++|+|||+++.
T Consensus 269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~ 301 (365)
T 4h5i_A 269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDL 301 (365)
T ss_dssp CSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred CCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence 889999999999999999999999999999875
No 102
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.9e-32 Score=212.30 Aligned_cols=203 Identities=17% Similarity=0.197 Sum_probs=171.0
Q ss_pred EeCCCc-eEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529 6 SFGINP-VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 6 ~~~~~~-v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 84 (244)
..|.+. +.++.+ ++++|++|+.||.|++||+.+ + +.+..+.+|.+.|.+++|+|++ ++++|+.|++|++||
T Consensus 118 ~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~--~--~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd- 189 (464)
T 3v7d_B 118 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN--K--KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD- 189 (464)
T ss_dssp ECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT--T--EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE-
T ss_pred cCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC--C--cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE-
Confidence 345555 566666 567999999999999999977 5 7888899999999999999987 899999999999999
Q ss_pred eCCCCCceeeEEEeccCcceEEEEEC--CCCCeEEEeeCCCeEEEEEeecCCCceE-------------------EEeee
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWS--PLENKFAAGSGARLISVCYFESENDWWV-------------------AKHIK 143 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------------------~~~~~ 143 (244)
+.+++. ...+..|...|.+++|+ ++++++++++.|+.|++||++....... .....
T Consensus 190 -~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 190 -IKKGCC--THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp -TTTTEE--EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred -CCCCcE--EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 777763 34456789999999998 5788999999999999999988754211 13345
Q ss_pred cCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC
Q psy11529 144 KPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN 223 (244)
Q Consensus 144 ~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 223 (244)
.+|...+.++ +++++++++++.||.|++||+ ..++.+..+.+| ...|.+++|+|+++
T Consensus 267 ~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~------------------~~~~~~~~~~~~---~~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 267 RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDV------------------AQMKCLYILSGH---TDRIYSTIYDHERK 323 (464)
T ss_dssp CCCSSCEEEE--EEETTEEEEEETTSCEEEEET------------------TTTEEEEEECCC---SSCEEEEEEETTTT
T ss_pred cCccceEEEE--cCCCCEEEEEeCCCeEEEEEC------------------CCCcEEEEecCC---CCCEEEEEEcCCCC
Confidence 5666777766 677899999999999999999 678888889888 89999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCC
Q psy11529 224 KLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 224 ~l~~~~~dg~i~vwd~~~~ 242 (244)
+|++|+.||.|++||+++.
T Consensus 324 ~l~sg~~dg~i~vwd~~~~ 342 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLENG 342 (464)
T ss_dssp EEEEEETTSCEEEEETTTT
T ss_pred EEEEEeCCCcEEEEECCCC
Confidence 9999999999999999753
No 103
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.5e-32 Score=219.52 Aligned_cols=203 Identities=11% Similarity=0.112 Sum_probs=176.4
Q ss_pred EeCCCc-eEEEEEcC--CCCeEEEecCCCeEEEeeeccCCC------cceeeeeeccCCCceEEEEeCCCCCeEEEEeCC
Q psy11529 6 SFGINP-VTTHAWNN--TRQQLAFTPNNQEVHLYQYEKAAN------DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD 76 (244)
Q Consensus 6 ~~~~~~-v~~~~~~~--~~~~l~~~~~d~~v~v~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 76 (244)
..|.+. |++++|+| ++++|++++.||.|++|++.. + .......+..|...|.+++|+|++++|++++.+
T Consensus 60 ~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 137 (615)
T 1pgu_A 60 TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF--DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 137 (615)
T ss_dssp CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE--EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred ecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCC--CcccccccccccchhhcccccEEEEEEeCCCCEEEEeccC
Confidence 346788 99999999 999999999999999999964 2 236777888899999999999999999999987
Q ss_pred ----ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCC-eEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC---
Q psy11529 77 ----RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLEN-KFAAGSGARLISVCYFESENDWWVAKHIKKPIKS--- 148 (244)
Q Consensus 77 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--- 148 (244)
+.|.+|| . ++ ....+..|...+.+++|+|+++ .+++++.|+.|++||++..+. ......|..
T Consensus 138 ~~~~~~v~~~d--~--~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~ 207 (615)
T 1pgu_A 138 RDNFGVFISWD--S--GN--SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF----SASDRTHHKQGS 207 (615)
T ss_dssp SSCSEEEEETT--T--CC--EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE----EEEECSSSCTTC
T ss_pred CCCccEEEEEE--C--CC--cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce----eeeecccCCCCc
Confidence 7888988 3 22 2445567899999999999998 799999999999999887653 455566777
Q ss_pred ceeEEEecCC-CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe-c---CCCCCCCCeEEEEEecCCC
Q psy11529 149 TITCLDWHPN-NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL-N---NSSSGGGWIHSVAFSKDGN 223 (244)
Q Consensus 149 ~v~~~~~~p~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~v~~~~~s~~~~ 223 (244)
.|.+++|+|+ +++|++++.||.|++||+ ..++.+..+ . .| ...|.+++|+ +++
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~------------------~~~~~~~~~~~~~~~~---~~~v~~~~~~-~~~ 265 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDG------------------KSGEFLKYIEDDQEPV---QGGIFALSWL-DSQ 265 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEET------------------TTCCEEEECCBTTBCC---CSCEEEEEES-SSS
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEEC------------------CCCCEeEEeccccccc---CCceEEEEEc-CCC
Confidence 8999999999 999999999999999999 667788888 5 67 8999999999 999
Q ss_pred EEEEeeCCCcEEEEeCCCC
Q psy11529 224 KLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 224 ~l~~~~~dg~i~vwd~~~~ 242 (244)
+|++++.|+.|++||+++.
T Consensus 266 ~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 266 KFATVGADATIRVWDVTTS 284 (615)
T ss_dssp EEEEEETTSEEEEEETTTT
T ss_pred EEEEEcCCCcEEEEECCCC
Confidence 9999999999999999753
No 104
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.1e-32 Score=205.75 Aligned_cols=203 Identities=15% Similarity=0.170 Sum_probs=155.8
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEee
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQ 84 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~ 84 (244)
..|.++|.+++|+|||++|++|+.+ .++||++.. . ....... ...+..+++.++++.+ ++++.|++|++||
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~--~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd- 87 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHP--V--AHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWD- 87 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSS-EEEEEEETT--E--EEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEE-
T ss_pred ccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCC--c--ceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEE-
Confidence 4578999999999999999999866 478999876 3 3333322 2357788899888877 4677789999999
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECCCC-----------------------------------CeEEE--eeCCCeEEE
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSPLE-----------------------------------NKFAA--GSGARLISV 127 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~l~~--~~~d~~i~i 127 (244)
..+++....+ .+...+.+++|+++. .++++ ++.+|.|++
T Consensus 88 -~~~~~~~~~~---~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i 163 (355)
T 3vu4_A 88 -DVKKQDVSRI---KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI 163 (355)
T ss_dssp -TTTTEEEEEE---ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred -CCCCcEEEEE---ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence 7777644433 356678888887652 23333 466788888
Q ss_pred EEeecCCCce-----------EE-EeeecCCCCceeEEEecCCCCEEEEeeCCCe-EEEEEeeecccccCCCCCCCCccc
Q psy11529 128 CYFESENDWW-----------VA-KHIKKPIKSTITCLDWHPNNHLLGCGSTDFK-VRVFSAYIKDIESAPQSTNWGSKS 194 (244)
Q Consensus 128 ~d~~~~~~~~-----------~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~ 194 (244)
||+++..... .. ......|...|++++|+|+|++|++|+.|++ |++||+
T Consensus 164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~------------------ 225 (355)
T 3vu4_A 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT------------------ 225 (355)
T ss_dssp EECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET------------------
T ss_pred EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC------------------
Confidence 8877653100 01 3456788999999999999999999999998 999999
Q ss_pred cccceeEEec-C-CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 195 TLGNCLVELN-N-SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 195 ~~~~~~~~~~-~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
.+++++..+. + | ...|.+++|+|+|++|++++.|++|++||+++
T Consensus 226 ~~~~~~~~~~~g~h---~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 226 EDGVLVREFRRGLD---RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp TTCCEEEEEECTTC---CSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred CCCcEEEEEEcCCC---CCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 6788888888 4 6 89999999999999999999999999999975
No 105
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=214.20 Aligned_cols=198 Identities=13% Similarity=0.096 Sum_probs=152.0
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC---------------------------CcceeeeeeccCCCceEEE
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA---------------------------NDWSQLDVLDGHDLKVTGI 61 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~---------------------------~~~~~~~~~~~~~~~v~~~ 61 (244)
...|.+++|+|||+++|+++.|++|+ +..... .+......+ .|...|.++
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~-~~~~~V~~v 91 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS-QPVCYPRVC 91 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT-SCSCCEEEE
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec-CCCCcEEEE
Confidence 57899999999999999999999995 322100 000111122 457889999
Q ss_pred EeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCc-----ceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC-
Q psy11529 62 DWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINR-----AATCVKWSPLENKFAAGSGARLISVCYFESEND- 135 (244)
Q Consensus 62 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~- 135 (244)
+|||+|++||+++.||.|++|| .+. ....+. |.. .+.+++|||+|++||+|+.||+|++||+..+..
T Consensus 92 awSPdG~~LAs~s~dg~V~iwd--~~~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~ 164 (588)
T 2j04_A 92 KPSPIDDWMAVLSNNGNVSVFK--DNK----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSEN 164 (588)
T ss_dssp EECSSSSCEEEEETTSCEEEEE--TTE----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTT
T ss_pred EECCCCCEEEEEeCCCcEEEEe--CCc----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccc
Confidence 9999999999999999999999 433 122223 443 599999999999999999999999999988742
Q ss_pred --ceEEEee----ecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccc---eeEEec-C
Q psy11529 136 --WWVAKHI----KKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGN---CLVELN-N 205 (244)
Q Consensus 136 --~~~~~~~----~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~ 205 (244)
.+..... ..+|...|.+++|+|+| +++++.|+.|++||+. ... ...++. +
T Consensus 165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~------------------~~~~~~~~~tL~~~ 224 (588)
T 2j04_A 165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVS------------------ASSHQPVSRMIQNA 224 (588)
T ss_dssp CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCC------------------SSSSCCCEEEEECC
T ss_pred cccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECC------------------CCccccceeeeccc
Confidence 0011222 25677899999999999 8888999999999983 333 234553 5
Q ss_pred CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 206 SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 206 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
| ...|.+++|+ |+.|++++ +++|++||+.+.
T Consensus 225 h---~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 225 S---RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp C---SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred c---cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 6 7899999999 68898887 699999998753
No 106
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=208.37 Aligned_cols=201 Identities=9% Similarity=-0.045 Sum_probs=151.2
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCC-----Ccceeeeee-ccCCCceEEEEeCC--CCCeEEEEeCCccEEE
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA-----NDWSQLDVL-DGHDLKVTGIDWAP--NTNRIVTCSADRNAYV 81 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~-----~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i 81 (244)
..|.++.|+|+ +++++.|+.|++|+..... ...+.+..+ .+|...|.+++|+| +++++++++.|++|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 55667778877 8899999999999765300 000223333 25778999999999 9999999999999999
Q ss_pred EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC-CCCceeEEEecCCCC
Q psy11529 82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP-IKSTITCLDWHPNNH 160 (244)
Q Consensus 82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~ 160 (244)
|| +++++..... ...+...+.+++|+|++.+|++|+.|+.|++||+++++. ....... |...|++++|+|++.
T Consensus 154 wd--~~~~~~~~~~-~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~---~~~~~~~~h~~~v~~l~fs~~g~ 227 (343)
T 3lrv_A 154 QS--YEDDSQYIVH-SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ---ASSRFPVDEEAKIKEVKFADNGY 227 (343)
T ss_dssp EE--SSSSCEEEEE-CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS---CCEECCCCTTSCEEEEEECTTSS
T ss_pred EE--CCCCcEEEEE-ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC---CccEEeccCCCCEEEEEEeCCCC
Confidence 99 7777642221 134556799999999999999999999999999999876 2123344 889999999999999
Q ss_pred EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec---CCCCCCCCe--EEEEEecCCCEEEEeeC-CCcE
Q psy11529 161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN---NSSSGGGWI--HSVAFSKDGNKLCWTSH-DGSI 234 (244)
Q Consensus 161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v--~~~~~s~~~~~l~~~~~-dg~i 234 (244)
+|++++ ++.|++||++. .+....+. .| ...+ .+++|+|+|++|++++. |+.|
T Consensus 228 ~l~s~~-~~~v~iwd~~~------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~l~~~s~~d~~i 285 (343)
T 3lrv_A 228 WMVVEC-DQTVVCFDLRK------------------DVGTLAYPTYTIP---EFKTGTVTYDIDDSGKNMIAYSNESNSL 285 (343)
T ss_dssp EEEEEE-SSBEEEEETTS------------------STTCBSSCCCBC--------CCEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEEEe-CCeEEEEEcCC------------------CCcceeecccccc---cccccceEEEECCCCCEEEEecCCCCcE
Confidence 999999 55999999953 32222222 12 2333 46999999999999998 9999
Q ss_pred EEEeCCC
Q psy11529 235 NVRMSQQ 241 (244)
Q Consensus 235 ~vwd~~~ 241 (244)
++|++++
T Consensus 286 ~v~~~~~ 292 (343)
T 3lrv_A 286 TIYKFDK 292 (343)
T ss_dssp EEEEECT
T ss_pred EEEEEcc
Confidence 9998854
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=208.37 Aligned_cols=192 Identities=10% Similarity=0.035 Sum_probs=153.4
Q ss_pred EEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee-------CCC
Q psy11529 16 AWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN-------NDD 88 (244)
Q Consensus 16 ~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-------~~~ 88 (244)
.+.+++++|++|+.||.|++||+.+ + +.+..+. ...|.++.|+|+ +++++.|++|++|+.+ ..+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~--~--~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKD--S--KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESS--S--SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred hhcCCCCEEEEECCCCcEEEEECCC--C--cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCC
Confidence 3446788999999999999999987 4 4444554 467888889987 9999999999999721 123
Q ss_pred CCceeeEEEeccCcceEEEEECC--CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529 89 KKWKPTLVLLRINRAATCVKWSP--LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS 166 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 166 (244)
++..... ...|...|.+++|+| +++++++++.|+.|++||+++++. .......+...+.+++|+|++++|++|+
T Consensus 114 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~~pdg~~lasg~ 189 (343)
T 3lrv_A 114 NKVLREI-EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ---YIVHSAKSDVEYSSGVLHKDSLLLALYS 189 (343)
T ss_dssp CCEEEEE-ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE---EEEECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred cceeEEe-ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE---EEEEecCCCCceEEEEECCCCCEEEEEc
Confidence 3222222 235667899999999 999999999999999999998864 2223344556799999999999999999
Q ss_pred CCCeEEEEEeeecccccCCCCCCCCcccccccee-EEecC-CCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL-VELNN-SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
.||.|++||+ ..++.. ..+.. | ..+|++++|+|+|.+|++++ |+.|++||+++.
T Consensus 190 ~dg~i~iwd~------------------~~~~~~~~~~~~~h---~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~ 245 (343)
T 3lrv_A 190 PDGILDVYNL------------------SSPDQASSRFPVDE---EAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD 245 (343)
T ss_dssp TTSCEEEEES------------------SCTTSCCEECCCCT---TSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS
T ss_pred CCCEEEEEEC------------------CCCCCCccEEeccC---CCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC
Confidence 9999999999 455555 66777 7 89999999999999999999 559999999875
No 108
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-31 Score=232.93 Aligned_cols=206 Identities=19% Similarity=0.269 Sum_probs=177.9
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC--CCCeEEEEeCCccEEEEee
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP--NTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~ 84 (244)
.|.+.|.+++|+|++++|++++.|+.|+|||+.+ + +.+..+.+|...|.+++|+| ++.++++++.|+.|++||
T Consensus 655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd- 729 (1249)
T 3sfz_A 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT--G--KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD- 729 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--C--CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEE-
T ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC--C--ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEE-
Confidence 4689999999999999999999999999999987 5 77888999999999999999 556899999999999999
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEE-------------------------
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVA------------------------- 139 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------------------- 139 (244)
..+++. ...+.+|...|.+++|+|+++++++++.|+.|++||+++.......
T Consensus 730 -~~~~~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 730 -LNQKEC--RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp -TTSSSE--EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred -CCCcch--hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 777764 3445689999999999999999999999999999998766431111
Q ss_pred --------------------------EeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcc
Q psy11529 140 --------------------------KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSK 193 (244)
Q Consensus 140 --------------------------~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 193 (244)
......|...+.+++|+|+++++++++.||.|++||+
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~----------------- 869 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI----------------- 869 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEET-----------------
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEc-----------------
Confidence 1112256678888999999999999999999999998
Q ss_pred ccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 194 STLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
..+..+..+.+| ...|.+++|+|+|++|++++.||.|++||+.+
T Consensus 870 -~~~~~~~~~~~h---~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 870 -DSRLKVADCRGH---LSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp -TTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred -CCCceeeecCCC---ccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 667888889998 99999999999999999999999999999753
No 109
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=200.35 Aligned_cols=195 Identities=17% Similarity=0.185 Sum_probs=168.6
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEee
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~ 84 (244)
..|..+|.+++| +++++++++.|+.|++|| .. .....+..|...+.+++|+| +++++++++.|+.|++||
T Consensus 101 ~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d- 171 (313)
T 3odt_A 101 IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-EG-----SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ- 171 (313)
T ss_dssp CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-TT-----EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE-
T ss_pred hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-CC-----cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe-
Confidence 346889999999 577999999999999999 33 67778888999999999998 899999999999999999
Q ss_pred eCCCCCceeeEEEec-cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 85 NNDDKKWKPTLVLLR-INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
... . ...... +...+.+++|+|++. +++++.|+.|++||+++.+. ......|...+.+++|+|++ .|+
T Consensus 172 -~~~--~--~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~-~l~ 240 (313)
T 3odt_A 172 -NDK--V--IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV----LRTYEGHESFVYCIKLLPNG-DIV 240 (313)
T ss_dssp -TTE--E--EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECTTS-CEE
T ss_pred -cCc--e--EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh----hhhhhcCCceEEEEEEecCC-CEE
Confidence 332 1 223334 788999999999988 99999999999999988764 44556788999999999999 688
Q ss_pred EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
+++.||.|++||+ ..++.+..+..| ...|.+++|+|+++ +++++.||.|++||+++.
T Consensus 241 ~~~~dg~v~iwd~------------------~~~~~~~~~~~~---~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 241 SCGEDRTVRIWSK------------------ENGSLKQVITLP---AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp EEETTSEEEEECT------------------TTCCEEEEEECS---SSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred EEecCCEEEEEEC------------------CCCceeEEEecc---CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 9999999999999 678888888888 88999999999998 567889999999999863
No 110
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.6e-32 Score=211.24 Aligned_cols=202 Identities=10% Similarity=0.034 Sum_probs=149.8
Q ss_pred eCCCceEEEEEcC--------CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCC-CeEEEEeCCc
Q psy11529 7 FGINPVTTHAWNN--------TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT-NRIVTCSADR 77 (244)
Q Consensus 7 ~~~~~v~~~~~~~--------~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~ 77 (244)
-|.+.|.+++|+| |+++||+++.|++|+|||+.. + .+...+..|...|.+++|+|++ .+|++++.|+
T Consensus 134 gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~--~--~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~ 209 (393)
T 4gq1_A 134 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD--E--GPILAGYPLSSPGISVQFRPSNPNQLIVGERNG 209 (393)
T ss_dssp SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET--T--EEEEEEEECSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC--C--ceeeeecCCCCCcEEEEECCCCCceEEecCCCC
Confidence 3689999999998 889999999999999999976 3 5666777799999999999977 4799999999
Q ss_pred cEEEEeeeCCCCCceee-----------------------EEEeccCcceEEEEEC-CCCCeEEEeeCCCeEEEEEeecC
Q psy11529 78 NAYVWTQNNDDKKWKPT-----------------------LVLLRINRAATCVKWS-PLENKFAAGSGARLISVCYFESE 133 (244)
Q Consensus 78 ~i~iwd~~~~~~~~~~~-----------------------~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~ 133 (244)
+|++|| +.+++.... ....+|...+.++.|+ |+++.+++++.|+++++||+...
T Consensus 210 ~v~~wd--~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 210 NIRIFD--WTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp EEEEEE--TTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred EEEEEE--CCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 999999 555542211 1123466778889986 79999999999999999999776
Q ss_pred CCceEEEeeecCCC------------------CceeEEEecC--CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcc
Q psy11529 134 NDWWVAKHIKKPIK------------------STITCLDWHP--NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSK 193 (244)
Q Consensus 134 ~~~~~~~~~~~~~~------------------~~v~~~~~~p--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 193 (244)
.... ....+. .......|+| ++.++++|+.||.|++||+
T Consensus 288 ~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~----------------- 346 (393)
T 4gq1_A 288 NDYN----EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINT----------------- 346 (393)
T ss_dssp --------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEET-----------------
T ss_pred CCCc----eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEEC-----------------
Confidence 5311 111111 1222334444 3446778889999999998
Q ss_pred ccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529 194 STLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 240 (244)
..++....+..| ..+|.+++|+|||++||+++.+| +.+|.+.
T Consensus 347 -~~~~~~~~~~~~---~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 347 -YEKDSNSIPIQL---GMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp -TCTTCCEEEEEC---SSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred -CCCcEEEEecCC---CCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 566777777777 88999999999999999998766 6566554
No 111
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.5e-30 Score=199.64 Aligned_cols=194 Identities=15% Similarity=0.230 Sum_probs=158.7
Q ss_pred CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND 87 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 87 (244)
+...|.++++ ++++|++|+.||.|++||+.+ + +....+.+|...|.+++| ++++|++|+.||.|++|| ..
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~--~--~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd--~~ 201 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT--L--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD--VN 201 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSS--C--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE--SS
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC--C--eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEE--CC
Confidence 3567888877 789999999999999999977 4 677889999999999999 688999999999999999 77
Q ss_pred CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC
Q psy11529 88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST 167 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 167 (244)
+++. ...+..|...|.+++|++ ..+++++.|+.|++||+++.... ........|...|.+++| +++++++|+.
T Consensus 202 ~~~~--~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 202 TGEM--LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI-TLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SCCE--EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC-EEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCcE--EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc-eeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 7764 344567889999999975 59999999999999999987652 223556778899999999 6789999999
Q ss_pred CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
||.|++||+ .+++.+..+..| ...|.+++| ++++|++|+.||.|++||+++
T Consensus 275 dg~i~vwd~------------------~~~~~~~~~~~~---~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~ 325 (435)
T 1p22_A 275 DRTIKVWNT------------------STCEFVRTLNGH---KRGIACLQY--RDRLVVSGSSDNTIRLWDIEC 325 (435)
T ss_dssp TSEEEEEET------------------TTCCEEEEEECC---SSCEEEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred CCeEEEEEC------------------CcCcEEEEEcCC---CCcEEEEEe--CCCEEEEEeCCCeEEEEECCC
Confidence 999999999 456666666666 666777766 355777777777777777664
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.3e-30 Score=201.80 Aligned_cols=195 Identities=22% Similarity=0.312 Sum_probs=169.2
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN 85 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 85 (244)
..|.++|.+++| ++++|++|+.||.|++||+.+ + +....+.+|...|.+++|++ ..+++++.|+.|++||
T Consensus 170 ~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~--~--~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd-- 239 (435)
T 1p22_A 170 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT--G--EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWD-- 239 (435)
T ss_dssp CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--C--CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEE--
T ss_pred cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--C--cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEe--
Confidence 346889999998 788999999999999999987 5 67888899999999999974 5899999999999999
Q ss_pred CCCCCcee-eEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529 86 NDDKKWKP-TLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC 164 (244)
Q Consensus 86 ~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 164 (244)
..++.... .....+|...+.+++| +++++++++.|+.|++||+++.+. ......|...+.++.|+ ++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~--~~~l~~ 311 (435)
T 1p22_A 240 MASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF----VRTLNGHKRGIACLQYR--DRLVVS 311 (435)
T ss_dssp CSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEEE--TTEEEE
T ss_pred CCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE----EEEEcCCCCcEEEEEeC--CCEEEE
Confidence 66655332 2445678899999999 778999999999999999998864 44556788899999994 679999
Q ss_pred eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
|+.||.|++||+ .+++++..+.+| ...|.+++| ++++|++|+.||.|++||+++
T Consensus 312 g~~dg~i~iwd~------------------~~~~~~~~~~~h---~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 312 GSSDNTIRLWDI------------------ECGACLRVLEGH---EELVRCIRF--DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp EETTSCEEEEET------------------TTCCEEEEECCC---SSCEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred EeCCCeEEEEEC------------------CCCCEEEEEeCC---cCcEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence 999999999999 678888999998 899999998 788999999999999999854
No 113
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.5e-30 Score=190.69 Aligned_cols=204 Identities=16% Similarity=0.321 Sum_probs=159.1
Q ss_pred eEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCc
Q psy11529 12 VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW 91 (244)
Q Consensus 12 v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 91 (244)
.++|+||+++ +||+|. |++|+|||+.+ ++......+.+|...|++++|+|++++|++|+.|++|++|| .++++.
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~t--g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~--~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASS--GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD--VQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTT--CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEE--TTTTEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCC--CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEee--cCCcee
Confidence 4679999986 777764 89999999987 53333444567888999999999999999999999999999 565543
Q ss_pred eee---------------------------------------EEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeec
Q psy11529 92 KPT---------------------------------------LVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFES 132 (244)
Q Consensus 92 ~~~---------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 132 (244)
... ..+..|...+..+.++++++++++++.|+.|++||+++
T Consensus 102 ~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 211 12345677888999999999999999999999999988
Q ss_pred CCCceEEEeeecCCCCceeEEEecCCCCE---EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCC
Q psy11529 133 ENDWWVAKHIKKPIKSTITCLDWHPNNHL---LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSG 209 (244)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~---l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (244)
++...........+.+.+.++.++|++.. +++++.++.|++||. .......... +
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~------------------~~~~~~~~~~-~--- 239 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV------------------CSGACLSAVD-A--- 239 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET------------------TTCCEEEEEE-C---
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec------------------cccccccccc-c---
Confidence 76533344555667789999999997753 346678899999998 4444444443 3
Q ss_pred CCCeEEEEEecCCCEEEEee--CCCcEEEEeCCCCC
Q psy11529 210 GGWIHSVAFSKDGNKLCWTS--HDGSINVRMSQQVL 243 (244)
Q Consensus 210 ~~~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~ 243 (244)
...+..+.|+|++..+++++ .|+.|++||+++..
T Consensus 240 ~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 275 (318)
T ss_dssp SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc
Confidence 67899999999999877654 79999999998653
No 114
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=8.3e-30 Score=197.79 Aligned_cols=202 Identities=15% Similarity=0.206 Sum_probs=163.7
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK 90 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 90 (244)
.++.++||++ +.||+|. |++|+|||..+ ++......+.+|...|++++|+|+|++|++|+.|+.|++|| +.+++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~t--g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd--~~~~~ 180 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASS--GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD--VQQQK 180 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTT--CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEE--TTTTE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCC--CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEE--cCCCc
Confidence 3567999975 5788775 89999999987 63344455667888999999999999999999999999999 77776
Q ss_pred ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCe
Q psy11529 91 WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFK 170 (244)
Q Consensus 91 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 170 (244)
. .....+|...+.+++++ +..|++++.|+.+++||...... .......|...+..+.|+|+++++++++.|+.
T Consensus 181 ~--~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~---~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~ 253 (420)
T 4gga_A 181 R--LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH---HVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 253 (420)
T ss_dssp E--EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred E--EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccce---eeEEecccccceeeeeecCCCCeeeeeecccc
Confidence 4 34456788899988875 57999999999999999988765 44556778899999999999999999999999
Q ss_pred EEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEE--eeCCCcEEEEeCCCC
Q psy11529 171 VRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCW--TSHDGSINVRMSQQV 242 (244)
Q Consensus 171 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~--~~~dg~i~vwd~~~~ 242 (244)
+++|+....+ .....+.....| ...|.+++|+|++. ++++ |+.|++|++||+++.
T Consensus 254 v~i~~~~~~~--------------~~~~~~~~~~~~---~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~ 311 (420)
T 4gga_A 254 VNVWPSAPGE--------------GGWVPLQTFTQH---QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 311 (420)
T ss_dssp EEEEESSCCS--------------SCSCCSEEECCC---SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred ceEEeecccc--------------ccceeeeeeccc---CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence 9999985432 112345566677 88999999999665 5554 457999999999764
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=1.4e-31 Score=205.94 Aligned_cols=216 Identities=13% Similarity=0.067 Sum_probs=144.5
Q ss_pred EcCCCCeEEEecCCCeEEEeeeccCCCcc---eeeeeeccCCCceEEEEeCC--------CCCeEEEEeCCccEEEEeee
Q psy11529 17 WNNTRQQLAFTPNNQEVHLYQYEKAANDW---SQLDVLDGHDLKVTGIDWAP--------NTNRIVTCSADRNAYVWTQN 85 (244)
Q Consensus 17 ~~~~~~~l~~~~~d~~v~v~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~iwd~~ 85 (244)
+.+++.+|++++.|++|+|||... +.. .....+.+|.+.|++++|+| ++++|++++.|++|+|||
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~--~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd-- 172 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKN--ETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR-- 172 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEET--TEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE--
T ss_pred cCCCCCEEEEEeCCCcEEEEECCC--CccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE--
Confidence 344566899999999999999976 321 23455789999999999997 788999999999999999
Q ss_pred CCCCCceeeEEEeccCcceEEEEECCCC-CeEEEeeCCCeEEEEEeecCCCceEEE---------------------eee
Q psy11529 86 NDDKKWKPTLVLLRINRAATCVKWSPLE-NKFAAGSGARLISVCYFESENDWWVAK---------------------HIK 143 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~---------------------~~~ 143 (244)
+.++.. ......|...+.+++|+|++ .+|++++.|++|++||+++++...... ...
T Consensus 173 ~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 173 LTDEGP--ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EETTEE--EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred CCCCce--eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 555442 44456788999999999987 479999999999999998765411111 111
Q ss_pred cCCCCceeEEEec-CCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCC-ccccccceeEEecCCCCCCCCeEEEEEec-
Q psy11529 144 KPIKSTITCLDWH-PNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWG-SKSTLGNCLVELNNSSSGGGWIHSVAFSK- 220 (244)
Q Consensus 144 ~~~~~~v~~~~~~-p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 220 (244)
..|...+.++.|+ |+++.|++++.|+++++||+............... ..............+ .. .....|+|
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~ 326 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF---PS-LLGACPHPR 326 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS---CC-SSCCEECSS
T ss_pred ccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc---Cc-ceeEEEccC
Confidence 3456778899987 79999999999999999998643322111000000 000001111122221 22 23334444
Q ss_pred -CCCEEEEeeCCCcEEEEeCCCC
Q psy11529 221 -DGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 221 -~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
++.++++|+.||.|++||+.+.
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~ 349 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEK 349 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCT
T ss_pred CCCEEEEEECCCCEEEEEECCCC
Confidence 4457778889999999999764
No 116
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.1e-30 Score=219.07 Aligned_cols=205 Identities=9% Similarity=0.078 Sum_probs=157.8
Q ss_pred CCceEEEEEcC----------CCCeEEEecCCCeEEEeeeccCCCcce-e------------------------------
Q psy11529 9 INPVTTHAWNN----------TRQQLAFTPNNQEVHLYQYEKAANDWS-Q------------------------------ 47 (244)
Q Consensus 9 ~~~v~~~~~~~----------~~~~l~~~~~d~~v~v~~~~~~~~~~~-~------------------------------ 47 (244)
...|.++.+.+ +...+++++.|+.|++|++.. +... .
T Consensus 342 ~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~--g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~ 419 (902)
T 2oaj_A 342 NVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS--GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLG 419 (902)
T ss_dssp SSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT--CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHH
T ss_pred CCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC--CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHH
Confidence 56788888765 344788888999999999854 2100 0
Q ss_pred --------eeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCce--eeEEEe-------ccCcceEEEEEC
Q psy11529 48 --------LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWK--PTLVLL-------RINRAATCVKWS 110 (244)
Q Consensus 48 --------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~-------~~~~~v~~~~~~ 110 (244)
...+.+|...+.+++|+|++++|++|+.|++|++|| +.++... ..+... +|...|.+++|+
T Consensus 420 ~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd--~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafs 497 (902)
T 2oaj_A 420 ALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYD--ASHGDIQDNASFEVNLSRTLNKAKELAVDKISFA 497 (902)
T ss_dssp HHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEE--SSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEE
T ss_pred HHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEE--CCCccccCCceEEeechhhcCCCCCCceeEEEec
Confidence 012345555666677789999999999999999999 6666432 112211 678899999999
Q ss_pred CCCCeEEEeeCCCeEEEEEeecCCCc-----------------------------------------eEEEeeecCCCCc
Q psy11529 111 PLENKFAAGSGARLISVCYFESENDW-----------------------------------------WVAKHIKKPIKST 149 (244)
Q Consensus 111 ~~~~~l~~~~~d~~i~i~d~~~~~~~-----------------------------------------~~~~~~~~~~~~~ 149 (244)
|++++||+|+.|++|++|++.+.+.. ..+......|.+.
T Consensus 498 pdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~ 577 (902)
T 2oaj_A 498 AETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK 577 (902)
T ss_dssp TTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS
T ss_pred CCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc
Confidence 99999999999999999999876310 0124455678899
Q ss_pred eeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE-----Eec-CCCCCCCCeEEEEEe----
Q psy11529 150 ITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV-----ELN-NSSSGGGWIHSVAFS---- 219 (244)
Q Consensus 150 v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~v~~~~~s---- 219 (244)
|++++|+||| +||+|+.|++|+|||+ .....+. .+. +| ...|++++|+
T Consensus 578 V~svafSpdG-~lAsgs~D~tv~lwd~------------------~~~~~~~~~~~~~~~~gh---~~~V~sv~Fs~~~~ 635 (902)
T 2oaj_A 578 TSAINNSNIG-FVGIAYAAGSLMLIDR------------------RGPAIIYMENIREISGAQ---SACVTCIEFVIMEY 635 (902)
T ss_dssp EEEEEECBTS-EEEEEETTSEEEEEET------------------TTTEEEEEEEGGGTCSSC---CCCEEEEEEEEEEC
T ss_pred EEEEEecCCc-EEEEEeCCCcEEEEEC------------------CCCeEEEEeehhHhcccc---ccceEEEEEEEEec
Confidence 9999999999 9999999999999998 3333332 232 66 8899999999
Q ss_pred -cCC---CEEEEeeCCCcEEEEeC
Q psy11529 220 -KDG---NKLCWTSHDGSINVRMS 239 (244)
Q Consensus 220 -~~~---~~l~~~~~dg~i~vwd~ 239 (244)
||| ++|++|+.|++|++||+
T Consensus 636 ~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 636 GDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CCCCCcceEEEEEecCCcEEEEEE
Confidence 886 89999999999999998
No 117
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.98 E-value=1.7e-29 Score=197.49 Aligned_cols=196 Identities=21% Similarity=0.293 Sum_probs=162.9
Q ss_pred eEEeCCCce-EEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529 4 VYSFGINPV-TTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW 82 (244)
Q Consensus 4 ~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 82 (244)
.+..|.+.| .+ +++++++|++|+.||.|++||+.+ + +....+.+|...|.+++|+ +.++++++.|+.|++|
T Consensus 113 ~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~--~--~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVT--G--KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTT--C--CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred EecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCC--C--cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence 344566654 55 455689999999999999999977 5 6788899999999999998 6699999999999999
Q ss_pred eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529 83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL 162 (244)
Q Consensus 83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 162 (244)
| ..+++. ...+..|...|.+++|+ ++.+++++.|+.|++||+++++. ......|...+.+++| +++++
T Consensus 185 d--~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~--~~~~l 252 (445)
T 2ovr_B 185 N--AETGEC--IHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC----LHVLMGHVAAVRCVQY--DGRRV 252 (445)
T ss_dssp E--TTTTEE--EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE----EEEEECCSSCEEEEEE--CSSCE
T ss_pred E--CCcCcE--EEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE----EEEEcCCcccEEEEEE--CCCEE
Confidence 9 777754 34456789999999995 56899999999999999998764 4455678889999999 68899
Q ss_pred EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
++++.||.|++||+ ..++.+..+.+| ...|.+++| ++.++++++.||.|++||+++.
T Consensus 253 ~~~~~dg~i~iwd~------------------~~~~~~~~~~~~---~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~ 309 (445)
T 2ovr_B 253 VSGAYDFMVKVWDP------------------ETETCLHTLQGH---TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG 309 (445)
T ss_dssp EEEETTSCEEEEEG------------------GGTEEEEEECCC---SSCEEEEEE--CSSEEEEEETTSCEEEEETTTC
T ss_pred EEEcCCCEEEEEEC------------------CCCcEeEEecCC---CCceEEEEE--CCCEEEEEeCCCeEEEEECCCC
Confidence 99999999999998 566777777777 778888888 7778888888888888888654
No 118
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.7e-29 Score=188.71 Aligned_cols=190 Identities=16% Similarity=0.239 Sum_probs=147.9
Q ss_pred eeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC--CceeeEEEeccCcceEEEEECC--CCCeEEEeeCCC
Q psy11529 48 LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK--KWKPTLVLLRINRAATCVKWSP--LENKFAAGSGAR 123 (244)
Q Consensus 48 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~ 123 (244)
...+.+|.+.|++++|+|++++|++++.|+.|++|| +.++ .......+..|...|.+++|+| ++++|++++.|+
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFK--LDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEE--ECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEE--CCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 345678999999999999999999999999999999 4443 2234455567999999999999 599999999999
Q ss_pred eEEEEEeecCCCc-----eEEEeeecCCCCceeEEEecCC--CCEEEEeeCCCeEEEEEeeecccccCCC----------
Q psy11529 124 LISVCYFESENDW-----WVAKHIKKPIKSTITCLDWHPN--NHLLGCGSTDFKVRVFSAYIKDIESAPQ---------- 186 (244)
Q Consensus 124 ~i~i~d~~~~~~~-----~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------- 186 (244)
.|++||++.+... .........|...+.+++|+|+ +++|++++.||.|++||++.........
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 9999999886421 1334556678899999999999 9999999999999999987544221100
Q ss_pred ---CCC-------C------Cc----------------cccccceeEEecCCCCCCCCeEEEEEecCC----CEEEEeeC
Q psy11529 187 ---STN-------W------GS----------------KSTLGNCLVELNNSSSGGGWIHSVAFSKDG----NKLCWTSH 230 (244)
Q Consensus 187 ---~~~-------~------~~----------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~ 230 (244)
... + +. .......+..+.+| ...|++++|+|++ ++|++++.
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH---KSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC---CSCEEEEEECCCSSCSSEEEEEEET
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC---CcceeEEEECCCCCCcceEEEEEcC
Confidence 000 0 00 00111235666777 8999999999998 89999999
Q ss_pred CCcEEEEeCCCC
Q psy11529 231 DGSINVRMSQQV 242 (244)
Q Consensus 231 dg~i~vwd~~~~ 242 (244)
||.|++||+++.
T Consensus 239 dg~i~iwd~~~~ 250 (351)
T 3f3f_A 239 DGRIRIFKITEK 250 (351)
T ss_dssp TSCEEEEEEEEC
T ss_pred CCeEEEEeCCCC
Confidence 999999998763
No 119
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.4e-28 Score=192.31 Aligned_cols=195 Identities=16% Similarity=0.250 Sum_probs=164.1
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN 85 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 85 (244)
..|..+|.+++| +++++++|+.|+.|++||+.. + +.+..+.+|...|.+++| ++.++++++.|+.|++||
T Consensus 236 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d-- 305 (445)
T 2ovr_B 236 MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET--E--TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD-- 305 (445)
T ss_dssp ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG--T--EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEE--
T ss_pred cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC--C--cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEE--
Confidence 346788999998 678999999999999999877 4 777888899999999999 688999999999999999
Q ss_pred CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeec---CCCCceeEEEecCCCCEE
Q psy11529 86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKK---PIKSTITCLDWHPNNHLL 162 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l 162 (244)
..+++.. ..+..|...+.++.++ ++++++++.|+.|++||+++++. ..... .|...|.+++|+ +++|
T Consensus 306 ~~~~~~~--~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 306 VETGNCI--HTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQC----LQTLQGPNKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp TTTCCEE--EEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE----EEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred CCCCCEE--EEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcE----EEEEccCCCCCCCEEEEEEC--CCEE
Confidence 7777643 3446778888888874 56999999999999999988764 22233 377889999996 5799
Q ss_pred EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe-----cCCCCCCCCeEEEEEecCCCEEEEeeCCCc----
Q psy11529 163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL-----NNSSSGGGWIHSVAFSKDGNKLCWTSHDGS---- 233 (244)
Q Consensus 163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---- 233 (244)
++|+.||.|++||+ .+++.+..+ ..+ ...|.+++|+|++.++++|+.||+
T Consensus 376 ~s~~~dg~v~iwd~------------------~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~la~~~~dg~~~~~ 434 (445)
T 2ovr_B 376 ITSSDDGTVKLWDL------------------KTGEFIRNLVTLESGGS---GGVVWRIRASNTKLVCAVGSRNGTEETK 434 (445)
T ss_dssp EEEETTSEEEEEET------------------TTCCEEEEEEECTTGGG---TCEEEEEEECSSEEEEEEECSSSSSCCE
T ss_pred EEEeCCCeEEEEEC------------------CCCceeeeeeccccCCC---CceEEEEEecCCEEEEEEcccCCCCccE
Confidence 99999999999999 667777766 345 789999999999999999999998
Q ss_pred EEEEeCCC
Q psy11529 234 INVRMSQQ 241 (244)
Q Consensus 234 i~vwd~~~ 241 (244)
|.+||++.
T Consensus 435 l~v~df~~ 442 (445)
T 2ovr_B 435 LLVLDFDV 442 (445)
T ss_dssp EEEEECCC
T ss_pred EEEEECCC
Confidence 99999875
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.7e-28 Score=185.26 Aligned_cols=220 Identities=10% Similarity=0.046 Sum_probs=154.8
Q ss_pred CceEEEEEcCCCCeE-EEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCC---------------------
Q psy11529 10 NPVTTHAWNNTRQQL-AFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT--------------------- 67 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l-~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------- 67 (244)
..+..+++.++++.+ ++++.|+.|++||..+ + +.+..+. +...|.+++|+++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~--~--~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~ 133 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK--K--QDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRI 133 (355)
T ss_dssp SCCCEEEECTTSSEEEEECSSTTEEEEEETTT--T--EEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBS
T ss_pred CCeEEEEEcCCCCEEEEEECCccEEEEEECCC--C--cEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceee
Confidence 457788899988877 4677789999999977 4 5666666 66788888887652
Q ss_pred --------------CeEEE--EeCCccEEEEeeeCCCCCc-------------ee-eEEEeccCcceEEEEECCCCCeEE
Q psy11529 68 --------------NRIVT--CSADRNAYVWTQNNDDKKW-------------KP-TLVLLRINRAATCVKWSPLENKFA 117 (244)
Q Consensus 68 --------------~~l~~--~~~d~~i~iwd~~~~~~~~-------------~~-~~~~~~~~~~v~~~~~~~~~~~l~ 117 (244)
.+++. |+.||.|++|| +.++.. .+ ...+.+|...|.+++|+|++++|+
T Consensus 134 ~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd--~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~ 211 (355)
T 3vu4_A 134 TDDIRFGGVCEFSNGLLVYSNEFNLGQIHITK--LQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA 211 (355)
T ss_dssp SCCEEEEEEEEEETTEEEEEESSCTTCEEEEE--CCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEeccCCceEEEEccEEEEeCCCcCcEEEEEE--CCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence 23333 46788888888 554320 11 345678999999999999999999
Q ss_pred EeeCCCe-EEEEEeecCCCceEEEeeecC-CCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCC--CCcc
Q psy11529 118 AGSGARL-ISVCYFESENDWWVAKHIKKP-IKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTN--WGSK 193 (244)
Q Consensus 118 ~~~~d~~-i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~ 193 (244)
+++.|++ |++||+++++. ......+ |...|.+++|+|++++|++++.|++|++||++............ ....
T Consensus 212 s~s~d~~~v~iwd~~~~~~---~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 212 TCSQDGTIIRVFKTEDGVL---VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp EEETTCSEEEEEETTTCCE---EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred EEeCCCCEEEEEECCCCcE---EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence 9999998 99999998875 3333324 88999999999999999999999999999996442211000000 0000
Q ss_pred ccccc--eeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 194 STLGN--CLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 194 ~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
..... ....+.... ......++|++|+++|++++.||.+++|++..
T Consensus 289 ~~~~~~~~~~~~~~~~--~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 289 FQSEWSLCNFKLSVDK--HVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCCSSCSEEEECCCCT--TCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred cccccceeEEEeccCC--CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 00000 111111110 33446799999999999999999999999764
No 121
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=3.2e-27 Score=182.85 Aligned_cols=197 Identities=12% Similarity=0.139 Sum_probs=153.9
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCC---eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEE-EEeCCcc--EE
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQ---EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV-TCSADRN--AY 80 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~---~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~ 80 (244)
.|...|.+++|+|||++|++++.++ .|++||+.+ + ....+..|...+.+++|+|+|++|+ +++.++. |+
T Consensus 176 ~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t--g---~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~ 250 (415)
T 2hqs_A 176 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--G---AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 250 (415)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--C---CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC--C---cEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence 3578899999999999999998775 999999987 4 2335667888999999999999888 5665554 88
Q ss_pred EEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CC--eEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529 81 VWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-AR--LISVCYFESENDWWVAKHIKKPIKSTITCLDWHP 157 (244)
Q Consensus 81 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 157 (244)
+|| +.+++. ..+..+...+.+++|+|+|++|++++. ++ .|.+||+.+++. .....+...+.+++|+|
T Consensus 251 ~~d--~~~~~~---~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~sp 320 (415)
T 2hqs_A 251 VMD--LASGQI---RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----QRITWEGSQNQDADVSS 320 (415)
T ss_dssp EEE--TTTCCE---EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----EECCCSSSEEEEEEECT
T ss_pred EEE--CCCCCE---EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-----EEEecCCCcccCeEECC
Confidence 899 777663 344567788999999999999988876 45 566667666543 22334556888999999
Q ss_pred CCCEEEEeeCC---CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC--
Q psy11529 158 NNHLLGCGSTD---FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG-- 232 (244)
Q Consensus 158 ~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-- 232 (244)
+|++|++++.+ +.|++||+ ..++. ..+..+ . .+.+++|+|||++|++++.++
T Consensus 321 dG~~l~~~~~~~g~~~i~~~d~------------------~~~~~-~~l~~~---~-~~~~~~~spdg~~l~~~s~~~~~ 377 (415)
T 2hqs_A 321 DGKFMVMVSSNGGQQHIAKQDL------------------ATGGV-QVLSST---F-LDETPSLAPNGTMVIYSSSQGMG 377 (415)
T ss_dssp TSSEEEEEEECSSCEEEEEEET------------------TTCCE-EECCCS---S-SCEEEEECTTSSEEEEEEEETTE
T ss_pred CCCEEEEEECcCCceEEEEEEC------------------CCCCE-EEecCC---C-CcCCeEEcCCCCEEEEEEcCCCc
Confidence 99999888764 58999998 44444 345443 3 789999999999999888777
Q ss_pred -cEEEEeCCC
Q psy11529 233 -SINVRMSQQ 241 (244)
Q Consensus 233 -~i~vwd~~~ 241 (244)
.|++||+..
T Consensus 378 ~~l~~~d~~g 387 (415)
T 2hqs_A 378 SVLNLVSTDG 387 (415)
T ss_dssp EEEEEEETTS
T ss_pred cEEEEEECCC
Confidence 799999864
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3.6e-27 Score=181.18 Aligned_cols=197 Identities=10% Similarity=0.112 Sum_probs=156.1
Q ss_pred CCceEEEEEcCCCCeE-EEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeC
Q psy11529 9 INPVTTHAWNNTRQQL-AFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNN 86 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l-~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 86 (244)
...+.+++|+|+++++ ++++.++.|++||+.+ + +....+..+. .+.+++|+|++++|+.+ +.++.|++|| .
T Consensus 31 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~--~--~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d--~ 103 (391)
T 1l0q_A 31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT--N--NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVID--T 103 (391)
T ss_dssp SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT--T--EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEE--T
T ss_pred CCCcceEEECCCCCEEEEECCCCCeEEEEECCC--C--eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEE--C
Confidence 4568999999999976 6677899999999977 4 5666666444 89999999999987654 4679999999 7
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeE-EEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE-EE
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKF-AAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL-GC 164 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~ 164 (244)
.+++.... ..+...+.+++|+|+++.+ ++++.++.|++||+++++. ...... ...+..++|+|+++++ ++
T Consensus 104 ~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~-~~~~~~~~~~~dg~~l~~~ 175 (391)
T 1l0q_A 104 TSNTVAGT---VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV----INTVSV-GRSPKGIAVTPDGTKVYVA 175 (391)
T ss_dssp TTTEEEEE---EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEEC-CSSEEEEEECTTSSEEEEE
T ss_pred CCCeEEEE---EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE----EEEEec-CCCcceEEECCCCCEEEEE
Confidence 77764332 2345678999999999987 6777799999999988754 222222 3567999999999877 57
Q ss_pred eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee---CCCcEEEEeCCC
Q psy11529 165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS---HDGSINVRMSQQ 241 (244)
Q Consensus 165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~ 241 (244)
++.++.|++||+ ..++....+.. ...+.+++|+|++++|++++ .++.|++||+++
T Consensus 176 ~~~~~~v~~~d~------------------~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~ 233 (391)
T 1l0q_A 176 NFDSMSISVIDT------------------VTNSVIDTVKV----EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233 (391)
T ss_dssp ETTTTEEEEEET------------------TTTEEEEEEEC----SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred eCCCCEEEEEEC------------------CCCeEEEEEec----CCCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence 778899999998 55666666654 56789999999999998887 689999999875
Q ss_pred C
Q psy11529 242 V 242 (244)
Q Consensus 242 ~ 242 (244)
.
T Consensus 234 ~ 234 (391)
T 1l0q_A 234 N 234 (391)
T ss_dssp T
T ss_pred C
Confidence 3
No 123
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=3e-28 Score=185.30 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=109.7
Q ss_pred eeeeeeccCCCceEEEEeCCC---CCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC
Q psy11529 46 SQLDVLDGHDLKVTGIDWAPN---TNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA 122 (244)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 122 (244)
+.+..+.+|.+.|++++|+|+ |++|++++.|+.|++|| +.+........+..|...|.+++|+|++++|++++.|
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWE--VQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEE--ECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEE--cCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 677788999999999999998 69999999999999999 5653333334556799999999999999999999999
Q ss_pred CeEEEEEeecCCCceEEEeeecCCCCceeEEEe--cCCCCEEEEeeCCCeEEEEEeeec
Q psy11529 123 RLISVCYFESENDWWVAKHIKKPIKSTITCLDW--HPNNHLLGCGSTDFKVRVFSAYIK 179 (244)
Q Consensus 123 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~~~~~dg~i~i~d~~~~ 179 (244)
+.|++||+++.+. .....|...|.+++| +|++++|++++.||.|++||++..
T Consensus 108 g~v~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 108 KTAKMWDLSSNQA-----IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp SEEEEEETTTTEE-----EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred CcEEEEEcCCCCc-----eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence 9999999998764 224557889999999 899999999999999999998654
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=6.4e-27 Score=179.78 Aligned_cols=197 Identities=13% Similarity=0.098 Sum_probs=156.8
Q ss_pred CCceEEEEEcCCCCeEEE-ecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeC
Q psy11529 9 INPVTTHAWNNTRQQLAF-TPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNN 86 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~-~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~ 86 (244)
...+.+++|+|++++|++ ++.++.|++||+.+ + +....+. +...+.+++|+|+++++ ++++.++.|++|| .
T Consensus 73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~--~--~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d--~ 145 (391)
T 1l0q_A 73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS--N--TVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVIN--T 145 (391)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEETTT--T--EEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEE--T
T ss_pred CCCccceEECCCCCEEEEEECCCCEEEEEECCC--C--eEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEE--C
Confidence 458999999999998755 45679999999987 4 5555565 44578999999999977 6778899999999 7
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeE-EEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKF-AAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
.+++..... .....+.+++|+|+++++ ++++.++.|++||+++.+. ... ..+...+.+++|+|++++|+++
T Consensus 146 ~~~~~~~~~---~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~-~~~~~~~~~~~~~~~g~~l~~~ 217 (391)
T 1l0q_A 146 VTKAVINTV---SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV----IDT-VKVEAAPSGIAVNPEGTKAYVT 217 (391)
T ss_dssp TTTEEEEEE---ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEE-EECSSEEEEEEECTTSSEEEEE
T ss_pred CCCcEEEEE---ecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE----EEE-EecCCCccceEECCCCCEEEEE
Confidence 777643332 234567999999999887 5667889999999988754 222 2245688999999999998888
Q ss_pred e---CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEE-EEeeCCCcEEEEeCCC
Q psy11529 166 S---TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKL-CWTSHDGSINVRMSQQ 241 (244)
Q Consensus 166 ~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~ 241 (244)
+ .++.|++||+ ..++.+..+..+ ..+.+++|+|++++| ++++.|+.|++||+++
T Consensus 218 ~~~~~~~~v~~~d~------------------~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 218 NVDKYFNTVSMIDT------------------GTNKITARIPVG----PDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EECSSCCEEEEEET------------------TTTEEEEEEECC----SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ecCcCCCcEEEEEC------------------CCCeEEEEEecC----CCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 7 6899999998 567777777764 457899999999977 5668899999999975
Q ss_pred C
Q psy11529 242 V 242 (244)
Q Consensus 242 ~ 242 (244)
.
T Consensus 276 ~ 276 (391)
T 1l0q_A 276 N 276 (391)
T ss_dssp T
T ss_pred C
Confidence 3
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3e-27 Score=183.98 Aligned_cols=199 Identities=10% Similarity=-0.008 Sum_probs=161.2
Q ss_pred CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEE-EeCCccEEEEeeeC
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVT-CSADRNAYVWTQNN 86 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~ 86 (244)
|.+.|.+++|+|+++++++++.|+.|++||+.+ + +....+..|...+.+++|+|+++++++ ++.|+.|++|| .
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d--~ 241 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKT--L--AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVID--R 241 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT--C--CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE--T
T ss_pred cCCceeEEEEcCCCEEEEEECCCCEEEEEECCC--c--eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE--C
Confidence 456899999999999999999999999999977 4 566777788999999999999998854 44799999999 7
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeEEEee--------CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS--------GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN 158 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 158 (244)
.+++... .......+.+++|+|+++.+++++ .|+.|++||+++++. .. ...+...+.+++|+|+
T Consensus 242 ~~~~~~~---~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~----~~-~~~~~~~~~~~~~~~~ 313 (433)
T 3bws_A 242 KTKLEIR---KTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL----ID-TIGPPGNKRHIVSGNT 313 (433)
T ss_dssp TTTEEEE---ECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE----EE-EEEEEECEEEEEECSS
T ss_pred CCCcEEE---EecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE----Ee-eccCCCCcceEEECCC
Confidence 7765322 233456699999999999999888 588999999987754 11 1233457889999999
Q ss_pred CCE-EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeC-------
Q psy11529 159 NHL-LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH------- 230 (244)
Q Consensus 159 ~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------- 230 (244)
++. +++++.++.|++||+ ..++.+..+. + ...+.+++|+|+|++|++++.
T Consensus 314 g~~l~~~~~~~~~v~v~d~------------------~~~~~~~~~~-~---~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 371 (433)
T 3bws_A 314 ENKIYVSDMCCSKIEVYDL------------------KEKKVQKSIP-V---FDKPNTIALSPDGKYLYVSCRGPNHPTE 371 (433)
T ss_dssp TTEEEEEETTTTEEEEEET------------------TTTEEEEEEE-C---SSSEEEEEECTTSSEEEEEECCCCCTTT
T ss_pred CCEEEEEecCCCEEEEEEC------------------CCCcEEEEec-C---CCCCCeEEEcCCCCEEEEEecCCCcccc
Confidence 974 566688999999998 5566666665 3 678999999999998888876
Q ss_pred --------CCcEEEEeCCCC
Q psy11529 231 --------DGSINVRMSQQV 242 (244)
Q Consensus 231 --------dg~i~vwd~~~~ 242 (244)
||.|++||+++.
T Consensus 372 ~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 372 GYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp CTTSCCSSCCEEEEEETTTT
T ss_pred ccccccccceEEEEEECCCC
Confidence 579999998763
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1e-26 Score=180.91 Aligned_cols=199 Identities=13% Similarity=0.074 Sum_probs=158.9
Q ss_pred eCCCceEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe--------CCc
Q psy11529 7 FGINPVTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS--------ADR 77 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~ 77 (244)
.+...+.+++|+|+++.++ +++.++.|++||+.+ + +....+.. ...+.+++|+|+++++++++ .|+
T Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~--~--~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg 283 (433)
T 3bws_A 209 LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT--K--LEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGG 283 (433)
T ss_dssp CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT--T--EEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCE
T ss_pred CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC--C--cEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCC
Confidence 3577899999999999875 455799999999976 4 55556654 45699999999999999887 488
Q ss_pred cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeE-EEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529 78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKF-AAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH 156 (244)
Q Consensus 78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 156 (244)
.|++|| ..+++.... ..+...+.+++|+|+++.+ ++++.++.+++||+++.+. ... ..+...+.+++|+
T Consensus 284 ~i~~~d--~~~~~~~~~---~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~----~~~-~~~~~~~~~~~~s 353 (433)
T 3bws_A 284 RLGIYS--MDKEKLIDT---IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV----QKS-IPVFDKPNTIALS 353 (433)
T ss_dssp EEEEEE--TTTTEEEEE---EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE----EEE-EECSSSEEEEEEC
T ss_pred eEEEEE--CCCCcEEee---ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE----EEE-ecCCCCCCeEEEc
Confidence 999999 777754332 3455688999999999765 5568899999999987654 122 2245778999999
Q ss_pred CCCCEEEEeeC---------------CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC
Q psy11529 157 PNNHLLGCGST---------------DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD 221 (244)
Q Consensus 157 p~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 221 (244)
|+++++++++. ||.|++||+ .+++.+..+.. ...+.+++|+|+
T Consensus 354 ~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~------------------~~~~~~~~~~~----~~~~~~~~~s~d 411 (433)
T 3bws_A 354 PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT------------------TTDTVKEFWEA----GNQPTGLDVSPD 411 (433)
T ss_dssp TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET------------------TTTEEEEEEEC----SSSEEEEEECTT
T ss_pred CCCCEEEEEecCCCccccccccccccceEEEEEEC------------------CCCcEEEEecC----CCCCceEEEcCC
Confidence 99998888776 579999998 66777777766 457899999999
Q ss_pred CCEEEEeeC-CCcEEEEeCCCC
Q psy11529 222 GNKLCWTSH-DGSINVRMSQQV 242 (244)
Q Consensus 222 ~~~l~~~~~-dg~i~vwd~~~~ 242 (244)
|++|++++. |+.|++|+++.+
T Consensus 412 g~~l~~~~~~d~~i~v~~~~~~ 433 (433)
T 3bws_A 412 NRYLVISDFLDHQIRVYRRDGF 433 (433)
T ss_dssp SCEEEEEETTTTEEEEEEETTC
T ss_pred CCEEEEEECCCCeEEEEEecCC
Confidence 999988875 999999998753
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.6e-27 Score=174.41 Aligned_cols=158 Identities=11% Similarity=0.018 Sum_probs=118.6
Q ss_pred eCCCceEEEEEcC---CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCC---CceEEEEeCCCCCeE----------
Q psy11529 7 FGINPVTTHAWNN---TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHD---LKVTGIDWAPNTNRI---------- 70 (244)
Q Consensus 7 ~~~~~v~~~~~~~---~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l---------- 70 (244)
.|...++.++|+| ++.+|++++.|++|+|||+.+ + +++.++.+|. ..+.+++|+|+|.++
T Consensus 176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T--G--k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w 251 (356)
T 2w18_A 176 LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT--G--QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKE 251 (356)
T ss_dssp ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT--C--CEEEEEECCC---CCCEEEEEEETTEEEEEEC------
T ss_pred cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC--C--cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcc
Confidence 4555666777777 667899999999999999987 5 7788887654 467788999999876
Q ss_pred --EEEeCCccEEEEeeeCCCCCceeeEEE---eccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC
Q psy11529 71 --VTCSADRNAYVWTQNNDDKKWKPTLVL---LRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP 145 (244)
Q Consensus 71 --~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 145 (244)
++|+.|++|++|| ..+++....+.. .+|...+.+..++ +..+++++.|++|+|||+.+++. .....+
T Consensus 252 ~laSGs~D~tIklWd--~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~----l~tL~g 323 (356)
T 2w18_A 252 SESLRSPVFQLIVIN--PKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQC----TALLPP 323 (356)
T ss_dssp ------CCEEEEEEE--TTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSE----EEEECC
T ss_pred eeeccCCCcEEEEEE--CCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcE----EEEecC
Confidence 5678899999999 777765433321 2444444444443 77899999999999999999875 445566
Q ss_pred CCCce-eEEEecCCCCEEEEeeCCCeEEEEEe
Q psy11529 146 IKSTI-TCLDWHPNNHLLGCGSTDFKVRVFSA 176 (244)
Q Consensus 146 ~~~~v-~~~~~~p~~~~l~~~~~dg~i~i~d~ 176 (244)
|...+ ..++|+|||++|++|+.|++|+|||+
T Consensus 324 H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 66554 46899999999999999999999996
No 128
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.96 E-value=6.6e-27 Score=181.79 Aligned_cols=207 Identities=10% Similarity=0.034 Sum_probs=152.0
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC------Cc-ce-----eeeeeccCCCceEEEEeCCCCCeEE----E
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA------ND-WS-----QLDVLDGHDLKVTGIDWAPNTNRIV----T 72 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~------~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~----~ 72 (244)
...++.+++++++.++++++.++ ++||+..... .. .. ....+ .+...|.+++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence 34588999999999999998887 8998753200 00 00 01112 2567899999999999999 7
Q ss_pred EeCCccEEEEeeeCCCC--------Cce-eeEEEeccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEee
Q psy11529 73 CSADRNAYVWTQNNDDK--------KWK-PTLVLLRINRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHI 142 (244)
Q Consensus 73 ~~~d~~i~iwd~~~~~~--------~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 142 (244)
++.|+.|++||+ .++ +.. ......+|...|.+++|+|+ +.+|++++.|++|++||+++... ...
T Consensus 114 gs~d~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~----~~~ 187 (434)
T 2oit_A 114 SEYGSIIAFFDV--RTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK----VCA 187 (434)
T ss_dssp TTTEEEEEEEEH--HHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE----EEE
T ss_pred cCCCceEEEEEc--cccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc----eee
Confidence 888999999994 332 111 12223457889999999998 88999999999999999998743 233
Q ss_pred ecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC----CCCCeEEEEE
Q psy11529 143 KKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS----GGGWIHSVAF 218 (244)
Q Consensus 143 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~ 218 (244)
...|...+.+++|+|+|++|++|+.||.|++||++ ++....+..+.. +...+.+++|
T Consensus 188 ~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-------------------~~~~~~~~~~~~~~~~~~~~v~~v~w 248 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-------------------LQEKKVIPCPPFYESDHPVRVLDVLW 248 (434)
T ss_dssp EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-------------------CCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-------------------CcccccccCCcccCCCCceeEEEEEE
Confidence 44577899999999999999999999999999983 333333333210 0347999999
Q ss_pred ecCCCEEEEe-eCCC------cEEEEeCCCC
Q psy11529 219 SKDGNKLCWT-SHDG------SINVRMSQQV 242 (244)
Q Consensus 219 s~~~~~l~~~-~~dg------~i~vwd~~~~ 242 (244)
++++.++++. +.|| .+++|++++.
T Consensus 249 ~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 249 IGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 9998877553 3443 3899999764
No 129
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=4.3e-25 Score=162.94 Aligned_cols=204 Identities=11% Similarity=0.104 Sum_probs=154.1
Q ss_pred CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccC-CCceEEEEeCCCCCeEEEEe--CCccEEEEee
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH-DLKVTGIDWAPNTNRIVTCS--ADRNAYVWTQ 84 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~ 84 (244)
+...|.+++|+|+|++|++++ ++.|++|++.+++ +.......+ ...+.+++|+|++++|++++ .++...||.+
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~ 115 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP---SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLL 115 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC---SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC---CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence 578899999999999999986 7899999986511 233344444 47789999999999999988 3456677764
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECCCCCeEE-EeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFA-AGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
+..++.. ..+ .....+..++|+|+++.|+ ++..++.+++|+++.... .......+...+.+++|+|++++|+
T Consensus 116 ~~~~~~~---~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 116 PSTGGTP---RLM-TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG---VETRLTHGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp ETTCCCC---EEC-CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC---CEEECCCSSSCEEEEEECTTSSEEE
T ss_pred ECCCCce---EEe-ecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC---cceEcccCCCccccceECCCCCEEE
Confidence 3555542 222 2334588999999999887 677899999999876543 1234455667899999999999887
Q ss_pred Eee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC-----------
Q psy11529 164 CGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD----------- 231 (244)
Q Consensus 164 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------- 231 (244)
+++ .++.+++|++. ..+.....+..+ ...+..++|+|+|++|++++.+
T Consensus 189 ~~~~~~~~~~i~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 248 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVR-----------------VDGSSVERITDS---AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD 248 (297)
T ss_dssp EEECTTSSCEEEEEE-----------------TTSSCEEECCCC---SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred EEecCCCCccEEEEC-----------------CCCCCcEEEecC---CcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence 766 58999999984 134455666666 7789999999999999888765
Q ss_pred CcEEEEeCCCC
Q psy11529 232 GSINVRMSQQV 242 (244)
Q Consensus 232 g~i~vwd~~~~ 242 (244)
+.|++||+++.
T Consensus 249 ~~l~~~d~~~~ 259 (297)
T 2ojh_A 249 VRVQLMDMDGG 259 (297)
T ss_dssp EEEEEEETTSC
T ss_pred eEEEEEecCCC
Confidence 56999998753
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=4.7e-25 Score=170.69 Aligned_cols=185 Identities=17% Similarity=0.170 Sum_probs=143.7
Q ss_pred CCeEEEecCC------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc---cEEEEeeeCCCCCc
Q psy11529 21 RQQLAFTPNN------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR---NAYVWTQNNDDKKW 91 (244)
Q Consensus 21 ~~~l~~~~~d------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~ 91 (244)
+..+++++.+ +.|++||+++ .....+.+|...+.+++|+|+|++|++++.++ .|++|| +.+++.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-----~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d--~~tg~~ 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-----YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQT--LANGAV 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-----CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEE--TTTCCE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-----CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEE--CCCCcE
Confidence 5666666543 7999999976 45667778999999999999999999998875 999999 777764
Q ss_pred eeeEEEeccCcceEEEEECCCCCeEE-EeeCCC--eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-
Q psy11529 92 KPTLVLLRINRAATCVKWSPLENKFA-AGSGAR--LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST- 167 (244)
Q Consensus 92 ~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~- 167 (244)
. .+..+...+.+++|+|+|+.|+ +++.++ .|++||+++++. .....+...+.+++|+|||++|++++.
T Consensus 216 ~---~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdg~~l~~~s~~ 287 (415)
T 2hqs_A 216 R---QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-----RQVTDGRSNNTEPTWFPDSQNLAFTSDQ 287 (415)
T ss_dssp E---EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----EECCCCSSCEEEEEECTTSSEEEEEECT
T ss_pred E---EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-----EeCcCCCCcccceEECCCCCEEEEEECC
Confidence 2 3456778899999999999888 555555 488888877653 344556678999999999999888876
Q ss_pred CC--eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC---CcEEEEeCCCC
Q psy11529 168 DF--KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD---GSINVRMSQQV 242 (244)
Q Consensus 168 dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~ 242 (244)
++ .|++||+ ..++ ...+..+ ...+.+++|+|||++|++++.+ ..|++||+++.
T Consensus 288 ~g~~~i~~~d~------------------~~~~-~~~l~~~---~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 288 AGRPQVYKVNI------------------NGGA-PQRITWE---GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp TSSCEEEEEET------------------TSSC-CEECCCS---SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred CCCcEEEEEEC------------------CCCC-EEEEecC---CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 45 6777776 3333 3334445 6778999999999999988764 58999998753
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=3e-24 Score=161.85 Aligned_cols=216 Identities=13% Similarity=0.066 Sum_probs=149.1
Q ss_pred CCCceEEEEEcCCCCeEEEecCC-CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-CccEEEEeee
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNN-QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-DRNAYVWTQN 85 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d-~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~ 85 (244)
+...+.+++|+|+|++|++++.+ +.|.+|++....+....+..+..+. .+..++|+|+++++++++. ++.|.+||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~- 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL- 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE-
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC-
Confidence 35678899999999988888776 9999999972114445555565444 7899999999998876665 889999994
Q ss_pred CCCCCceeeEEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceEEE--eeecCCCCceeEEEecCCCCEE
Q psy11529 86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWVAK--HIKKPIKSTITCLDWHPNNHLL 162 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l 162 (244)
.++..............+.+++|+|+++++++++ .++.|.+||++......... .........+..++|+|+++++
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l 192 (343)
T 1ri6_A 114 -EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA 192 (343)
T ss_dssp -ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred -CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence 3332222222333455688999999999888877 89999999998733311111 2223334578899999999977
Q ss_pred EEee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEec---CCCCCCCCeEEEEEecCCCEEEEe-eCCCcEEEE
Q psy11529 163 GCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN---NSSSGGGWIHSVAFSKDGNKLCWT-SHDGSINVR 237 (244)
Q Consensus 163 ~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vw 237 (244)
++++ .++.|.+|++..... ......... ........+..++|+|+|++|+++ ..++.|.+|
T Consensus 193 ~~~~~~~~~i~~~~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~ 258 (343)
T 1ri6_A 193 YCVNELNSSVDVWELKDPHG--------------NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF 258 (343)
T ss_dssp EEEETTTTEEEEEESSCTTS--------------CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEeCCCCEEEEEEecCCCC--------------cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEE
Confidence 6554 789999999842110 011111121 110003457789999999987744 478999999
Q ss_pred eCC
Q psy11529 238 MSQ 240 (244)
Q Consensus 238 d~~ 240 (244)
|++
T Consensus 259 d~~ 261 (343)
T 1ri6_A 259 SVS 261 (343)
T ss_dssp EEC
T ss_pred EEc
Confidence 987
No 132
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.94 E-value=7e-23 Score=154.98 Aligned_cols=212 Identities=11% Similarity=0.117 Sum_probs=145.8
Q ss_pred CCCceEEEEEcCCCCeEEEec-CCCeEEEeeeccCCCcceeeeeecc---------CCCceEEEEeCCCCCeEEEEeCCc
Q psy11529 8 GINPVTTHAWNNTRQQLAFTP-NNQEVHLYQYEKAANDWSQLDVLDG---------HDLKVTGIDWAPNTNRIVTCSADR 77 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~d~ 77 (244)
+...+..++|+|+|++|++++ .++.|.+|++... +....+..+.. +...+.+++|+|+|+.+++...++
T Consensus 84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~-g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD-GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT-SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC-CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 356778899999999888877 6799999999531 22334443332 123488999999999666666688
Q ss_pred cEEEEeeeCC-CCCceeeEEEec-cCcceEEEEECCCCCeEEE-eeCCCeEEEEEeecCCCceEEEeeecCCC------C
Q psy11529 78 NAYVWTQNND-DKKWKPTLVLLR-INRAATCVKWSPLENKFAA-GSGARLISVCYFESENDWWVAKHIKKPIK------S 148 (244)
Q Consensus 78 ~i~iwd~~~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~------~ 148 (244)
.|.+|+ +. +++......... ....+..++|+|+|+++++ ...++.+.+|+++................ .
T Consensus 163 ~v~~~~--~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 240 (347)
T 3hfq_A 163 KVYVYN--VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN 240 (347)
T ss_dssp EEEEEE--ECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred EEEEEE--ECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence 999999 44 454333222222 2336788999999997666 45688999999986332111111111111 4
Q ss_pred ceeEEEecCCCCEE-EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEE
Q psy11529 149 TITCLDWHPNNHLL-GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCW 227 (244)
Q Consensus 149 ~v~~~~~~p~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 227 (244)
.+..++|+|||++| ++...++.|.+|++... ...+.+..+..+ ...+..++|+|||++|++
T Consensus 241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~---------------g~~~~~~~~~~~---~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD---------------GHLTLIQQISTE---GDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp EEEEEEECTTSCEEEEEEETTTEEEEEEECGG---------------GCEEEEEEEECS---SSCCCEEEECTTSSEEEE
T ss_pred cceeEEECCCCCEEEEEeCCCCEEEEEEECCC---------------CcEEEeEEEecC---CCCcCeEEECCCCCEEEE
Confidence 58899999999977 45556899999998311 022445556555 566889999999998888
Q ss_pred eeC-CCcEEEEeCC
Q psy11529 228 TSH-DGSINVRMSQ 240 (244)
Q Consensus 228 ~~~-dg~i~vwd~~ 240 (244)
++. ++.|.+|+++
T Consensus 303 ~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 303 VNQNTDNATLYARD 316 (347)
T ss_dssp EETTTTEEEEEEEC
T ss_pred EEcCCCcEEEEEEe
Confidence 775 4899999553
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=2.8e-23 Score=156.03 Aligned_cols=203 Identities=11% Similarity=0.091 Sum_probs=147.0
Q ss_pred eCCCceEEEEEcCCCCeEEEecC-CCeEEEeeeccCCCccee-eeeeccCCCceEEEEeCCCCCeEEEEeCCc---cEEE
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPN-NQEVHLYQYEKAANDWSQ-LDVLDGHDLKVTGIDWAPNTNRIVTCSADR---NAYV 81 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~-d~~v~v~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i 81 (244)
.+...+ +++|+|+|+++++++. ++.|.+||+.+ + +. ...+..+..+..+++|+|++++++++..++ .|.+
T Consensus 38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~--~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v 112 (331)
T 3u4y_A 38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL--E--PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQS 112 (331)
T ss_dssp CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS--S--SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEE
T ss_pred ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC--C--ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEE
Confidence 345566 9999999997666554 88999999977 4 33 556665666666699999999998555553 8999
Q ss_pred EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEe-eCCCe-EEEEEeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529 82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAG-SGARL-ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN 159 (244)
Q Consensus 82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 159 (244)
|| ..+++..... .......+++|+|+|++++++ ..++. +.+|+++.....................++|+|+|
T Consensus 113 ~d--~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg 187 (331)
T 3u4y_A 113 YS--FLKNKFISTI---PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG 187 (331)
T ss_dssp EE--TTTTEEEEEE---ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS
T ss_pred EE--CCCCCeEEEE---ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCC
Confidence 99 7777643332 334567899999999866655 45577 99999986554222211222334568999999999
Q ss_pred CEEEEe-eCCCeEEEEEeeecccccCCCCCCCCccccccce---eEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcE
Q psy11529 160 HLLGCG-STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC---LVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSI 234 (244)
Q Consensus 160 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i 234 (244)
++++++ ..++.|++||+ .+++. +..+.. ...+..++|+|||++|+.++ .++.|
T Consensus 188 ~~l~v~~~~~~~v~v~d~------------------~~~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~i 245 (331)
T 3u4y_A 188 NFAFVANLIGNSIGILET------------------QNPENITLLNAVGT----NNLPGTIVVSRDGSTVYVLTESTVDV 245 (331)
T ss_dssp SEEEEEETTTTEEEEEEC------------------SSTTSCEEEEEEEC----SSCCCCEEECTTSSEEEEECSSEEEE
T ss_pred CEEEEEeCCCCeEEEEEC------------------CCCcccceeeeccC----CCCCceEEECCCCCEEEEEEcCCCEE
Confidence 966554 46889999998 44555 666654 56678999999999776554 57889
Q ss_pred EEEeCCC
Q psy11529 235 NVRMSQQ 241 (244)
Q Consensus 235 ~vwd~~~ 241 (244)
.+||+++
T Consensus 246 ~~~d~~~ 252 (331)
T 3u4y_A 246 FNFNQLS 252 (331)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9999875
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=6.5e-23 Score=154.52 Aligned_cols=209 Identities=11% Similarity=0.022 Sum_probs=144.0
Q ss_pred CceEEEEEcCCCCeEEEec-CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CCccEEEEeeeCC
Q psy11529 10 NPVTTHAWNNTRQQLAFTP-NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWTQNND 87 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~-~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 87 (244)
..+.+++|+|++++|++++ .++.|.+|++.. +........+. ....+.+++|+|+++++++++ .++.|.+|| +.
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d--~~ 159 (343)
T 1ri6_A 84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLED-GLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFT--VS 159 (343)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEET-TEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEE--EC
T ss_pred CCCcEEEEcCCCCEEEEEecCCCeEEEEECCC-Ccccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEE--ec
Confidence 4778899999999876665 488999999942 11113444444 344688999999999888877 799999999 55
Q ss_pred C-CCceeeE--EEe-ccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceE-EEeee-c--C--CCCceeEEEec
Q psy11529 88 D-KKWKPTL--VLL-RINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWV-AKHIK-K--P--IKSTITCLDWH 156 (244)
Q Consensus 88 ~-~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~-~~~~~-~--~--~~~~v~~~~~~ 156 (244)
+ ++..... ... .....+..++|+|+++++++++ .++.+.+|+++....... ..... . . ....+..++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT 239 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence 5 5433222 222 2345788999999999776655 789999999965322111 11111 1 1 12356789999
Q ss_pred CCCCEEEE-eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcE
Q psy11529 157 PNNHLLGC-GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSI 234 (244)
Q Consensus 157 p~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i 234 (244)
|+|++|++ +..++.|.+||+.... ...+.+..+..+ . .+..++|+|+|++|++++ .++.|
T Consensus 240 ~dg~~l~v~~~~~~~i~v~d~~~~~--------------~~~~~~~~~~~~---~-~~~~~~~s~dg~~l~~~~~~~~~v 301 (343)
T 1ri6_A 240 PDGRHLYACDRTASLITVFSVSEDG--------------SVLSKEGFQPTE---T-QPRGFNVDHSGKYLIAAGQKSHHI 301 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTS--------------CCEEEEEEEECS---S-SCCCEEECTTSSEEEEECTTTCEE
T ss_pred CCCCEEEEEecCCCEEEEEEEcCCC--------------CceEEeeeecCC---C-ccceEEECCCCCEEEEecCCCCeE
Confidence 99987774 4478999999983100 123445555553 3 388999999999888877 68999
Q ss_pred EEEeCC
Q psy11529 235 NVRMSQ 240 (244)
Q Consensus 235 ~vwd~~ 240 (244)
.+|+++
T Consensus 302 ~v~~~d 307 (343)
T 1ri6_A 302 SVYEIV 307 (343)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 999654
No 135
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=8.2e-23 Score=154.59 Aligned_cols=212 Identities=10% Similarity=0.022 Sum_probs=144.4
Q ss_pred CCceEEEEEcCCCCeEEEecC---CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CCccEEEEee
Q psy11529 9 INPVTTHAWNNTRQQLAFTPN---NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWTQ 84 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~---d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~ 84 (244)
...+..++|+|||+ |++++. ++.|++|++.+ +..+.+..+..+...+..++|+|+|++|++++ .++.+.+|++
T Consensus 39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~--g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDG--QTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEET--TEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cCCcceEEEccCCe-EEEEEecCCCceEEEEEecC--CcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 35567799999999 554443 68999999976 54455666566778889999999999888887 6799999994
Q ss_pred eCCCCCceeeEEEec---------cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529 85 NNDDKKWKPTLVLLR---------INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDW 155 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 155 (244)
. .++.......... ....+.+++|+|+++.+++...++.|.+|+++..................+..++|
T Consensus 116 ~-~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 116 A-ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp C-TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred C-CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 2 3444332222211 11247889999999966666678899999998433211222222233346788999
Q ss_pred cCCCCEEEE-eeCCCeEEEEEeeecccccCCCCCCCCccccccc--eeEEecCCC---CCCCCeEEEEEecCCCEEE-Ee
Q psy11529 156 HPNNHLLGC-GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGN--CLVELNNSS---SGGGWIHSVAFSKDGNKLC-WT 228 (244)
Q Consensus 156 ~p~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~v~~~~~s~~~~~l~-~~ 228 (244)
+|||+++++ +..++.|.+|++... .++ .+..+.... .....+..++|+|||++|+ +.
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~ 258 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQ----------------TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN 258 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETT----------------TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCC----------------CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe
Confidence 999996665 456889999998421 122 122222210 0014588999999999774 55
Q ss_pred eCCCcEEEEeCC
Q psy11529 229 SHDGSINVRMSQ 240 (244)
Q Consensus 229 ~~dg~i~vwd~~ 240 (244)
..++.|.+|++.
T Consensus 259 ~~~~~v~v~~~~ 270 (347)
T 3hfq_A 259 RGYNTLAVFAVT 270 (347)
T ss_dssp ETTTEEEEEEEC
T ss_pred CCCCEEEEEEEC
Confidence 568999999986
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=2.7e-24 Score=177.89 Aligned_cols=197 Identities=14% Similarity=0.152 Sum_probs=146.3
Q ss_pred CCceEEEEEcCCCCeEEEecC-CC-----eEEEeeeccCCCcceeeeeeccC--C----------------------Cce
Q psy11529 9 INPVTTHAWNNTRQQLAFTPN-NQ-----EVHLYQYEKAANDWSQLDVLDGH--D----------------------LKV 58 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~-d~-----~v~v~~~~~~~~~~~~~~~~~~~--~----------------------~~v 58 (244)
...+.+++|+|||++|++++. |+ .|++||+.+ + +....+..+ . ..|
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~--g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS--G--QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI 111 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT--C--CEEEEECGGGTC--------------------CCEES
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC--C--ceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence 567999999999999999988 88 899999987 4 333333322 2 337
Q ss_pred EEEEeCCCCCeEEEEeCCccEEEEeeeCCCC---CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC
Q psy11529 59 TGIDWAPNTNRIVTCSADRNAYVWTQNNDDK---KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND 135 (244)
Q Consensus 59 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 135 (244)
.+++|+|||++|++++. +.|.+|| +.++ ... .+..+...+..++|+|||++|++++. +.|++||+.+++.
T Consensus 112 ~~~~~SpDg~~l~~~~~-~~i~~~d--~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 112 VDYQWSPDAQRLLFPLG-GELYLYD--LKQEGKAAVR---QLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQ 184 (741)
T ss_dssp CCCEECTTSSEEEEEET-TEEEEEE--SSSCSTTSCC---BCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEE
T ss_pred ceeEECCCCCEEEEEeC-CcEEEEE--CCCCCcceEE---EcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCE
Confidence 89999999999999886 8999999 6666 422 23456678999999999999999874 5899999887643
Q ss_pred ceEEEeeecCCCC----------------ceeEEEecCCCCEEEEeeCCC------------------------------
Q psy11529 136 WWVAKHIKKPIKS----------------TITCLDWHPNNHLLGCGSTDF------------------------------ 169 (244)
Q Consensus 136 ~~~~~~~~~~~~~----------------~v~~~~~~p~~~~l~~~~~dg------------------------------ 169 (244)
......+.. .+..++|+|||++|++++.|+
T Consensus 185 ----~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 185 ----MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp ----EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred ----EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 222222222 147899999999999987665
Q ss_pred ---eEEEEEeeecccccCCCCCCCCccccc-cceeEEec--CCCCCCCCeEEEEEecCCCEEEEeeC-----CCcEEEEe
Q psy11529 170 ---KVRVFSAYIKDIESAPQSTNWGSKSTL-GNCLVELN--NSSSGGGWIHSVAFSKDGNKLCWTSH-----DGSINVRM 238 (244)
Q Consensus 170 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd 238 (244)
.|++||+ .. ++...... .+ ...+..++| |||++|++++. +..|++||
T Consensus 261 ~~~~l~~~d~------------------~~~~~~~~~~~~~~~---~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d 318 (741)
T 2ecf_A 261 VQVKLGVISP------------------AEQAQTQWIDLGKEQ---DIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVT 318 (741)
T ss_dssp CEEEEEEECS------------------STTCCCEEECCCSCS---SEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEE
T ss_pred CeeEEEEEEC------------------CCCCceEEecCCCCc---ceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEE
Confidence 6777776 33 33332222 24 678999999 99999987654 56799999
Q ss_pred CCCC
Q psy11529 239 SQQV 242 (244)
Q Consensus 239 ~~~~ 242 (244)
+++.
T Consensus 319 ~~~g 322 (741)
T 2ecf_A 319 LASN 322 (741)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8753
No 137
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=1e-23 Score=163.84 Aligned_cols=166 Identities=15% Similarity=0.142 Sum_probs=125.4
Q ss_pred CCceEEEEEcCCCCeEE----EecCCCeEEEeeeccC-----C--CcceeeeeeccCCCceEEEEeCCC-CCeEEEEeCC
Q psy11529 9 INPVTTHAWNNTRQQLA----FTPNNQEVHLYQYEKA-----A--NDWSQLDVLDGHDLKVTGIDWAPN-TNRIVTCSAD 76 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~----~~~~d~~v~v~~~~~~-----~--~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 76 (244)
...|.+++|+|+|++|+ +++.|+.|+|||+... . ..+.....+.+|...|.+++|+|+ +.+|++++.|
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 46799999999999999 7889999999998651 0 011234566789999999999997 8899999999
Q ss_pred ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeee---cCCCCceeEE
Q psy11529 77 RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK---KPIKSTITCL 153 (244)
Q Consensus 77 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~ 153 (244)
++|++|| ++++. .......|...+.+++|+|+|++|++|+.|+.|++||.+ ++......... ..|...+.++
T Consensus 172 g~v~iwD--~~~~~--~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v 246 (434)
T 2oit_A 172 GSIAVLQ--VTETV--KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV 246 (434)
T ss_dssp SCEEEEE--ESSSE--EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred CeEEEEE--cCCCc--ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence 9999999 56653 233445678899999999999999999999999999988 33211110000 0123489999
Q ss_pred EecCCCCEEEE-eeCCC------eEEEEEeeec
Q psy11529 154 DWHPNNHLLGC-GSTDF------KVRVFSAYIK 179 (244)
Q Consensus 154 ~~~p~~~~l~~-~~~dg------~i~i~d~~~~ 179 (244)
+|++++.++++ .+.+| .+++|+++..
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 99998877754 33443 3899999643
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.1e-24 Score=179.60 Aligned_cols=202 Identities=10% Similarity=0.071 Sum_probs=143.4
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC---ceEEEEeCCCCCeEEEEeCC---------c
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL---KVTGIDWAPNTNRIVTCSAD---------R 77 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~ 77 (244)
..+.+++|+|||+++++ +.||.|++||+.+ + +....+..|.. .|.+++|||||++|++++.+ +
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~--g--~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVET--N--TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGG--C--CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCC--C--cEEEEeccccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence 34678999999997766 6789999999987 4 44455565554 49999999999999998764 7
Q ss_pred cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC---------
Q psy11529 78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS--------- 148 (244)
Q Consensus 78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--------- 148 (244)
.+.+|| +.+++.........+...+..++|+|||+.|++++. +.|++||+.+++. ......+..
T Consensus 92 ~i~~~d--~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~----~~~~~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 92 YYVLSK--IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA----IRVVSTGKEGVIYNGLSD 164 (723)
T ss_dssp EEEEEE--SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC----EEEECCCBTTTEEEEECC
T ss_pred eEEEEE--CCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce----EEEecCCCCCceECcccc
Confidence 888999 777764222211223445889999999999999886 7899999988765 222222222
Q ss_pred ---------ceeEEEecCCCCEEEEeeCCC----------------------------------eEEEEEeeecccccCC
Q psy11529 149 ---------TITCLDWHPNNHLLGCGSTDF----------------------------------KVRVFSAYIKDIESAP 185 (244)
Q Consensus 149 ---------~v~~~~~~p~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~ 185 (244)
.+.+++|+|||++|++++.++ .|++||+
T Consensus 165 ~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~--------- 235 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL--------- 235 (723)
T ss_dssp HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES---------
T ss_pred eeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC---------
Confidence 237899999999999887543 5666666
Q ss_pred CCCCCCccccccceeEEecCCC---CCCCCeEEEEEecCCCEEEEeeC----CCcEEEEeCCC
Q psy11529 186 QSTNWGSKSTLGNCLVELNNSS---SGGGWIHSVAFSKDGNKLCWTSH----DGSINVRMSQQ 241 (244)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~ 241 (244)
..++....+..+. .....+..++|||||++|++.+. +..|++||+.+
T Consensus 236 ---------~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 289 (723)
T 1xfd_A 236 ---------NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT 289 (723)
T ss_dssp ---------SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred ---------CCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence 2333323333210 00457889999999998877653 35799999865
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=3.4e-23 Score=152.71 Aligned_cols=192 Identities=13% Similarity=0.106 Sum_probs=142.0
Q ss_pred CceEEEEEcCCCCeEEEec--CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEE-EEeCCccEEEEeeeC
Q psy11529 10 NPVTTHAWNNTRQQLAFTP--NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV-TCSADRNAYVWTQNN 86 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~--~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~ 86 (244)
..+.+++|+|++++|++++ .++...||.++...+ ....+..+ ..+..++|+|++++|+ +++.++.+.+|+++.
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~ 160 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG---TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI 160 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC---CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC---ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence 6788899999999999988 334566665532112 33444433 3488999999999887 677899999999655
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
.++. ...+..+...+.+++|+|+++.|++++ .++.+++|+++.... .......+...+..++|+|+|++|+++
T Consensus 161 ~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~ 234 (297)
T 2ojh_A 161 DSGV---ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS---SVERITDSAYGDWFPHPSPSGDKVVFV 234 (297)
T ss_dssp TTCC---EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---CEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred CCCc---ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC---CcEEEecCCcccCCeEECCCCCEEEEE
Confidence 5544 234455677899999999999888766 589999999984433 133445566788999999999999888
Q ss_pred eCC-----------CeEEEEEeeecccccCCCCCCCCccccccce--eEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC
Q psy11529 166 STD-----------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNC--LVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG 232 (244)
Q Consensus 166 ~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 232 (244)
+.+ +.|++||+ ..++. +..+..| ...+..++|+|+|++|++++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~d~------------------~~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 235 SYDADVFDHPRDLDVRVQLMDM------------------DGGNVETLFDLFGG---QGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTCCSCCSSEEEEEEEEET------------------TSCSCEEEEEEEES---TTTSCSCCBCTTSSEEEEEEECC
T ss_pred EcCCCCCcccccCceEEEEEec------------------CCCCceeeeccCCC---CcccccceECCCCCEEEEEEecc
Confidence 765 56999998 33333 4444466 77899999999999998887654
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.5e-23 Score=173.44 Aligned_cols=199 Identities=15% Similarity=0.149 Sum_probs=146.7
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK 90 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 90 (244)
.|.+++|||||++|++++. +.|++|++.+ +.......+..|...+..++|+|||++|++++ ++.|++|| +.+++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~--~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d--~~~g~ 183 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQ--EGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVID--LASGR 183 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSS--CSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEE--TTTTE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCC--CCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEe--cCCCC
Confidence 4789999999999999886 9999999987 30004556777888999999999999999887 56899999 66665
Q ss_pred ceeeEEEeccCc----------------ceEEEEECCCCCeEEEeeCCC-------------------------------
Q psy11529 91 WKPTLVLLRINR----------------AATCVKWSPLENKFAAGSGAR------------------------------- 123 (244)
Q Consensus 91 ~~~~~~~~~~~~----------------~v~~~~~~~~~~~l~~~~~d~------------------------------- 123 (244)
..... ..+.. .+..++|+|||++|++++.|+
T Consensus 184 ~~~~~--~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 184 QMQLT--ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp EEECC--CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred EEEec--cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 32221 11211 147899999999999987665
Q ss_pred --eEEEEEeec-CCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-----CCeEEEEEeeecccccCCCCCCCCcccc
Q psy11529 124 --LISVCYFES-ENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-----DFKVRVFSAYIKDIESAPQSTNWGSKST 195 (244)
Q Consensus 124 --~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 195 (244)
.|.+||+++ ++. ........+...+..++| |||++|++++. +..|++||+ .
T Consensus 262 ~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~------------------~ 320 (741)
T 2ecf_A 262 QVKLGVISPAEQAQT--QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL------------------A 320 (741)
T ss_dssp EEEEEEECSSTTCCC--EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET------------------T
T ss_pred eeEEEEEECCCCCce--EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC------------------C
Confidence 778888877 654 111111246678999999 99999887654 568999998 4
Q ss_pred ccceeEEecCCCCCCC---CeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529 196 LGNCLVELNNSSSGGG---WIHSVAFSKDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 196 ~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 240 (244)
+++....+..+. .. .+..++|+|||+++++++.||.+.||.++
T Consensus 321 ~g~~~~~~~~~~--~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 321 SNQQRVLAHETS--PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp TCCEEEEEEEEC--SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred CCceEEEEEcCC--CCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 555555554431 12 45689999999999999999988887654
No 141
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=8.8e-22 Score=156.94 Aligned_cols=202 Identities=7% Similarity=0.052 Sum_probs=150.5
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEeee--ccCCCcceeeeeeccCCCceEEEEeCC----CCCeEEEEeC-CccEEEEe
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQY--EKAANDWSQLDVLDGHDLKVTGIDWAP----NTNRIVTCSA-DRNAYVWT 83 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~iwd 83 (244)
.+..++|+|||++|++++.|+.|.+||+ .+ . +.+..+. +...+..++|+| +|+++++++. +++|.+||
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t--~--~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D 254 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKE--P--TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 254 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSS--C--EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCC--C--cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEe
Confidence 4889999999999999999999999999 44 3 6677777 456679999999 9999998875 89999999
Q ss_pred eeCCCCCceeeEEEec--------c-CcceEEEEECCCCCe-EEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEE
Q psy11529 84 QNNDDKKWKPTLVLLR--------I-NRAATCVKWSPLENK-FAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCL 153 (244)
Q Consensus 84 ~~~~~~~~~~~~~~~~--------~-~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 153 (244)
..+++....+...+ | ...+..+.++|++.. +++...++.|.+||+...+... .....+...+.++
T Consensus 255 --~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~---~~~i~~~~~~~~~ 329 (543)
T 1nir_A 255 --GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT---VTSIGAAPFLHDG 329 (543)
T ss_dssp --TTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE---EEEEECCSSCCCE
T ss_pred --ccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce---eEEeccCcCccCc
Confidence 77877655544321 2 236889999998665 5566678999999998866422 1112244678899
Q ss_pred EecCCCCEEEEee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC-CCCCCeEEEEEecC-CCEEEEee-
Q psy11529 154 DWHPNNHLLGCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS-SGGGWIHSVAFSKD-GNKLCWTS- 229 (244)
Q Consensus 154 ~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~-~~~l~~~~- 229 (244)
.|+|+|+++++++ .+++|.+||+ .+++++..+.... .+.+....+ ++|+ +.+++++.
T Consensus 330 ~~spdg~~l~va~~~~~~v~v~D~------------------~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~ 390 (543)
T 1nir_A 330 GWDSSHRYFMTAANNSNKVAVIDS------------------KDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHL 390 (543)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEET------------------TTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred eECCCCCEEEEEecCCCeEEEEEC------------------CCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccC
Confidence 9999999776554 5889999999 6677777776410 003333333 4787 66677765
Q ss_pred CCCcEEEEeCCC
Q psy11529 230 HDGSINVRMSQQ 241 (244)
Q Consensus 230 ~dg~i~vwd~~~ 241 (244)
.|++|.+||+.+
T Consensus 391 ~d~~V~v~d~~~ 402 (543)
T 1nir_A 391 GDGSISLIGTDP 402 (543)
T ss_dssp SSSEEEEEECCT
T ss_pred CCceEEEEEeCC
Confidence 589999999876
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=9.4e-22 Score=148.85 Aligned_cols=202 Identities=13% Similarity=0.047 Sum_probs=148.6
Q ss_pred CceEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccCCC---------ceEEEEeCCCCCeEEEEe--CCc
Q psy11529 10 NPVTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGHDL---------KVTGIDWAPNTNRIVTCS--ADR 77 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~ 77 (244)
..+..++|+|+|++++ +...++.|.+||..+ + +....+..+.. .+.+++|+|+++++++++ .++
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 164 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKT--G--EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKES 164 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTT--C--CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSC
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCC--C--eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCc
Confidence 4567899999999655 445579999999977 4 44455544322 278899999999887765 478
Q ss_pred cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529 78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP 157 (244)
Q Consensus 78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 157 (244)
.|.+|| ..+++.... +..+...+.+++|+|+++++++++.++.+.+||..+.+...........+...+..++|+|
T Consensus 165 ~i~~~d--~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 165 VIWVVD--GGNIKLKTA--IQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp EEEEEE--TTTTEEEEE--ECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred eEEEEc--CCCCceEEE--ecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence 899999 777664322 2224455889999999999999999999999999887642222111122445678899999
Q ss_pred CCCEEEEeeC-CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEE
Q psy11529 158 NNHLLGCGST-DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSIN 235 (244)
Q Consensus 158 ~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~ 235 (244)
+++++++++. ++.|.+||+ .+++.+..+... . + ..++|+|+|++++.++ .++.|.
T Consensus 241 dg~~l~~~~~~~~~v~~~d~------------------~~~~~~~~~~~~---~-~-~~~~~s~dg~~l~v~~~~~~~v~ 297 (353)
T 3vgz_A 241 ARQRAFITDSKAAEVLVVDT------------------RNGNILAKVAAP---E-S-LAVLFNPARNEAYVTHRQAGKVS 297 (353)
T ss_dssp TTTEEEEEESSSSEEEEEET------------------TTCCEEEEEECS---S-C-CCEEEETTTTEEEEEETTTTEEE
T ss_pred CCCEEEEEeCCCCEEEEEEC------------------CCCcEEEEEEcC---C-C-ceEEECCCCCEEEEEECCCCeEE
Confidence 9997776665 589999998 567777766653 2 2 5699999999665555 689999
Q ss_pred EEeCCCC
Q psy11529 236 VRMSQQV 242 (244)
Q Consensus 236 vwd~~~~ 242 (244)
+||+.+.
T Consensus 298 ~~d~~~~ 304 (353)
T 3vgz_A 298 VIDAKSY 304 (353)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 9998753
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=8.3e-22 Score=149.15 Aligned_cols=205 Identities=11% Similarity=-0.001 Sum_probs=151.2
Q ss_pred CCceEEEEEcCCCCeEEEecC-------CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEE
Q psy11529 9 INPVTTHAWNNTRQQLAFTPN-------NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAY 80 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~-------d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~ 80 (244)
...+..++|+|+++++++++. ++.|.+||..+ + +....+.. ...+..++|+|++++++.+ ..++.|.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~--~--~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT--L--EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT--C--CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC--C--eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEE
Confidence 456789999999998887763 56899999977 4 45555543 4457789999999966554 5579999
Q ss_pred EEeeeCCCCCceeeEEEeccC-------cceEEEEECCCCCeEEEee--CCCeEEEEEeecCCCceEEEeeecCCCCcee
Q psy11529 81 VWTQNNDDKKWKPTLVLLRIN-------RAATCVKWSPLENKFAAGS--GARLISVCYFESENDWWVAKHIKKPIKSTIT 151 (244)
Q Consensus 81 iwd~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 151 (244)
+|| ..+++........... ..+.+++|+|+++++++++ .++.|.+||.++.+. ......+...+.
T Consensus 115 ~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~~ 188 (353)
T 3vgz_A 115 AID--AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL----KTAIQNTGKMST 188 (353)
T ss_dssp EEE--TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE----EEEECCCCTTCC
T ss_pred EEe--CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce----EEEecCCCCccc
Confidence 999 7787754444321111 1268899999999887776 478899999987754 223332445688
Q ss_pred EEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC-CCCCeEEEEEecCCCEEEEeeC
Q psy11529 152 CLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS-GGGWIHSVAFSKDGNKLCWTSH 230 (244)
Q Consensus 152 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~ 230 (244)
.++|+|+++++++++.++.|.+||+ .+++....+..... ....+..++|+|+|++|+.++.
T Consensus 189 ~~~~s~dg~~l~~~~~~~~i~~~d~------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 189 GLALDSEGKRLYTTNADGELITIDT------------------ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp CCEEETTTTEEEEECTTSEEEEEET------------------TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred eEEECCCCCEEEEEcCCCeEEEEEC------------------CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 9999999999999999999999998 55666665554100 0556888999999997776664
Q ss_pred -CCcEEEEeCCCC
Q psy11529 231 -DGSINVRMSQQV 242 (244)
Q Consensus 231 -dg~i~vwd~~~~ 242 (244)
++.|.+||+++.
T Consensus 251 ~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 251 KAAEVLVVDTRNG 263 (353)
T ss_dssp SSSEEEEEETTTC
T ss_pred CCCEEEEEECCCC
Confidence 589999999764
No 144
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=5.5e-22 Score=158.14 Aligned_cols=195 Identities=9% Similarity=-0.001 Sum_probs=146.8
Q ss_pred EEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC--CCCCcee
Q psy11529 16 AWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN--DDKKWKP 93 (244)
Q Consensus 16 ~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~ 93 (244)
+++|++..+++++.++.|.+||..+ + +.+.++..+.. +..++|+|+|++|++++.|+.|.+|| + .+++...
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t--~--~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D--~~~~t~~~~~ 216 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDS--K--KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMID--LWAKEPTKVA 216 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTT--C--CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEE--TTSSSCEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCC--c--eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEE--CcCCCCcEEE
Confidence 4889999999999999999999977 4 66777773333 88999999999999999999999999 6 5555332
Q ss_pred eEEEeccCcceEEEEECC----CCCeEEEeeC-CCeEEEEEeecCCCceEEEeeec-------CCCCceeEEEecCCCC-
Q psy11529 94 TLVLLRINRAATCVKWSP----LENKFAAGSG-ARLISVCYFESENDWWVAKHIKK-------PIKSTITCLDWHPNNH- 160 (244)
Q Consensus 94 ~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~- 160 (244)
.+. ....+..++|+| +|+++++++. +++|.+||..+.+.......... .....+..+.++|++.
T Consensus 217 --~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 217 --EIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 293 (543)
T ss_dssp --EEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred --EEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence 222 456789999999 9999999885 89999999888765222211100 0123788999999776
Q ss_pred EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE--EecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEE
Q psy11529 161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV--ELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVR 237 (244)
Q Consensus 161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw 237 (244)
++++...++.|.+||+. ..+.+. .+. + ...+..++|+|+|++|++++ .+++|.+|
T Consensus 294 ~~vs~~~~g~i~vvd~~------------------~~~~l~~~~i~-~---~~~~~~~~~spdg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 294 FIVNVKETGKVLLVNYK------------------DIDNLTVTSIG-A---APFLHDGGWDSSHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp EEEEETTTTEEEEEECT------------------TSSSCEEEEEE-C---CSSCCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred EEEEECCCCeEEEEEec------------------CCCcceeEEec-c---CcCccCceECCCCCEEEEEecCCCeEEEE
Confidence 55666778999999983 322222 333 3 56688999999999876554 68999999
Q ss_pred eCCCC
Q psy11529 238 MSQQV 242 (244)
Q Consensus 238 d~~~~ 242 (244)
|+++.
T Consensus 352 D~~tg 356 (543)
T 1nir_A 352 DSKDR 356 (543)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 99763
No 145
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=9.3e-21 Score=144.09 Aligned_cols=213 Identities=11% Similarity=0.083 Sum_probs=143.2
Q ss_pred CCCceEEEEEcCCCCeEEEecCC----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CCccEEEE
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNN----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVW 82 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw 82 (244)
+...+..++|+|||++|++++.+ +.|.+|++....+..+.+.....+......+++ ++++|++++ .++.+.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 34566778999999999888775 799999987532333455555555667778888 788777766 57899999
Q ss_pred eeeCCC-CCceeeEEEec-----------cCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCC------ceEE---E
Q psy11529 83 TQNNDD-KKWKPTLVLLR-----------INRAATCVKWSPLENKFAAGS-GARLISVCYFESEND------WWVA---K 140 (244)
Q Consensus 83 d~~~~~-~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~------~~~~---~ 140 (244)
+ +.. +.......... ....+.+++|+|+|+++++++ .++.+.+|+++.... .... .
T Consensus 126 ~--~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 126 P--IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp E--BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred E--eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 9 443 22211111111 122357899999999776655 488999999986542 1111 2
Q ss_pred eeecCCCCceeEEEecCCCCEEEEee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe
Q psy11529 141 HIKKPIKSTITCLDWHPNNHLLGCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS 219 (244)
Q Consensus 141 ~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 219 (244)
.........+..++|+|+|+++++++ .++.|.+||+..... +.+..+............++|+
T Consensus 204 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~----------------~~~~~~~~~~~~~~~~~~i~~s 267 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML----------------DEIQTVAADTVNAQGSGDIHLS 267 (361)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE----------------EEEEEEESCSSCCCCEEEEEEC
T ss_pred ceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce----------------EEeEEEecCCCCCCCcccEEEC
Confidence 22334446678999999999887777 589999999842211 1122222211004557899999
Q ss_pred cCCCEEEEeeC--CCcEEEEeCC
Q psy11529 220 KDGNKLCWTSH--DGSINVRMSQ 240 (244)
Q Consensus 220 ~~~~~l~~~~~--dg~i~vwd~~ 240 (244)
|||++|+++.. ++.|.+|++.
T Consensus 268 pdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 268 PDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp TTSSEEEEEECSSSCEEEEEEEC
T ss_pred CCCCEEEEECCCCCCEEEEEEEc
Confidence 99998876665 4899999985
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=5.1e-22 Score=149.28 Aligned_cols=197 Identities=10% Similarity=0.026 Sum_probs=144.5
Q ss_pred ceEEEEEcCCCCeE-EEecCCCeEEEeeeccCCCcceeeeeecc-C----CCceEEEEeCCCCCeEEEEe----------
Q psy11529 11 PVTTHAWNNTRQQL-AFTPNNQEVHLYQYEKAANDWSQLDVLDG-H----DLKVTGIDWAPNTNRIVTCS---------- 74 (244)
Q Consensus 11 ~v~~~~~~~~~~~l-~~~~~d~~v~v~~~~~~~~~~~~~~~~~~-~----~~~v~~~~~~~~~~~l~~~~---------- 74 (244)
.+..++|+|+|+++ +++..++.|.+||+.+ + +....+.. + ...+.+++|+|+|++++++.
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~--~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 110 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVT--G--ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTT--C--CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCC--C--CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccc
Confidence 57899999999865 4556678999999976 4 34444432 1 22577899999999988885
Q ss_pred --CCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEee----------
Q psy11529 75 --ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHI---------- 142 (244)
Q Consensus 75 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---------- 142 (244)
.++.|.+|| ..+++..... .....+.+++|+|++++|+++ ++.+.+||+.+++........
T Consensus 111 ~~~~~~i~v~d--~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~ 183 (337)
T 1pby_B 111 EVQPTRVALYD--AETLSRRKAF---EAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183 (337)
T ss_dssp EECCCEEEEEE--TTTTEEEEEE---ECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCC
T ss_pred cccCceEEEEE--CCCCcEEEEE---eCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCC
Confidence 579999999 7776543332 234567889999999988887 678999998765431100000
Q ss_pred ----------------------------------------------------ecCCCCceeEEEecCCCCEEEEeeCCCe
Q psy11529 143 ----------------------------------------------------KKPIKSTITCLDWHPNNHLLGCGSTDFK 170 (244)
Q Consensus 143 ----------------------------------------------------~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 170 (244)
..++...+.+++|+|++++++++ ++.
T Consensus 184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~ 261 (337)
T 1pby_B 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV 261 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE
T ss_pred CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe
Confidence 00111234568999999998887 689
Q ss_pred EEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 171 VRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 171 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
|.+||+ .+++.+..+.. ...+.+++|+|+|++|++++.++.|.+||+++.
T Consensus 262 v~~~d~------------------~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 262 LESFDL------------------EKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp EEEEET------------------TTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred EEEEEC------------------CCCcCcceecC----CCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 999998 56666666665 456789999999999998889999999999764
No 147
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=1e-22 Score=174.02 Aligned_cols=193 Identities=8% Similarity=0.012 Sum_probs=158.1
Q ss_pred CceEEEEEc-CCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC-ceEEEEeCCCCCeEEEEeCCccEE-EEeeeC
Q psy11529 10 NPVTTHAWN-NTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL-KVTGIDWAPNTNRIVTCSADRNAY-VWTQNN 86 (244)
Q Consensus 10 ~~v~~~~~~-~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~-iwd~~~ 86 (244)
..+.+++|+ |||++|++++ ++.|++|++.. + ....+..|.. .+..++|+ +|+.|++++.+..+. +|| .
T Consensus 296 ~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~--~---~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d--~ 366 (1045)
T 1k32_A 296 PSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG--T---YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYD--Y 366 (1045)
T ss_dssp GGGGEEEEEECGGGCEEEEE-TTEEEEECTTS--S---BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEE--T
T ss_pred cccceeeecCCCCCEEEEEE-cCEEEEEcCCC--C---ceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEE--C
Confidence 468999999 9999999887 78999999877 3 3344666777 89999999 999999998888888 889 6
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS 166 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 166 (244)
.+++.. .+..+...+..++|+|+|++|++++.++.+++||+.+++. ......+...+..++|+|||++|++++
T Consensus 367 ~~~~~~---~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~----~~~~~~~~~~v~~~~~SpDG~~la~~~ 439 (1045)
T 1k32_A 367 RTGKAE---KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP----TVIERSREAMITDFTISDNSRFIAYGF 439 (1045)
T ss_dssp TTCCEE---ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred CCCCce---EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce----EEeccCCCCCccceEECCCCCeEEEEe
Confidence 666532 2335677899999999999999999999999999988764 334446778889999999999998887
Q ss_pred CCC----------eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEE
Q psy11529 167 TDF----------KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236 (244)
Q Consensus 167 ~dg----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 236 (244)
.++ .|++||+ ..++ ...+..| ...+..++|+|||++|++++.++...+
T Consensus 440 ~~~~~~~~~~~~~~i~l~d~------------------~~g~-~~~l~~~---~~~~~~~~~spdG~~l~~~s~~~~~~~ 497 (1045)
T 1k32_A 440 PLKHGETDGYVMQAIHVYDM------------------EGRK-IFAATTE---NSHDYAPAFDADSKNLYYLSYRSLDPS 497 (1045)
T ss_dssp EECSSTTCSCCEEEEEEEET------------------TTTE-EEECSCS---SSBEEEEEECTTSCEEEEEESCCCCCE
T ss_pred cCccccccCCCCCeEEEEEC------------------CCCc-EEEeeCC---CcccCCceEcCCCCEEEEEecccCCcC
Confidence 644 8999998 4444 5566666 777899999999999999999888888
Q ss_pred EeCC
Q psy11529 237 RMSQ 240 (244)
Q Consensus 237 wd~~ 240 (244)
|+..
T Consensus 498 ~~~~ 501 (1045)
T 1k32_A 498 PDRV 501 (1045)
T ss_dssp ECSS
T ss_pred cchh
Confidence 8754
No 148
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=3e-21 Score=144.98 Aligned_cols=208 Identities=12% Similarity=0.081 Sum_probs=139.2
Q ss_pred CCCceEEEEEcCCCCeEEEecCCC---eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCcc-EEEE
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNNQ---EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRN-AYVW 82 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d~---~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-i~iw 82 (244)
+..+..+++|+|+|++++++..++ .|.+||+.. + +.+..+.. .....+++|+|+|++++++ ..++. +.+|
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~--~--~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~ 156 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK--N--KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRF 156 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT--T--EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCC--C--CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEE
Confidence 345555599999999998665553 899999977 4 55555553 4556899999999866655 45578 9999
Q ss_pred eeeCCCCCceee-EEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529 83 TQNNDDKKWKPT-LVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH 160 (244)
Q Consensus 83 d~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 160 (244)
+++ ..+..... .........+..++|+|+++++++++ .++.|.+||+++++......... ....+..++|+|+|+
T Consensus 157 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~ 233 (331)
T 3u4y_A 157 KID-ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGS 233 (331)
T ss_dssp EEC-TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSS
T ss_pred EEC-CCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCC
Confidence 952 22222111 12223445689999999999765554 68999999998776411122221 236778999999999
Q ss_pred EEEEee-CCCeEEEEEeeecccccCCCCCCCCccccccce--eEEecCC----CCCCCCeEEEEEecCCCEEEEee-CCC
Q psy11529 161 LLGCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC--LVELNNS----SSGGGWIHSVAFSKDGNKLCWTS-HDG 232 (244)
Q Consensus 161 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~-~dg 232 (244)
++++++ .++.|.+||+. +++. +..+..+ .........++|+|||++|++++ .++
T Consensus 234 ~l~v~~~~~~~i~~~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 295 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQL------------------SGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR 295 (331)
T ss_dssp EEEEECSSEEEEEEEETT------------------TTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT
T ss_pred EEEEEEcCCCEEEEEECC------------------CCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC
Confidence 776554 57789999983 3333 2222211 00012235689999999886655 467
Q ss_pred cEEEEeCCC
Q psy11529 233 SINVRMSQQ 241 (244)
Q Consensus 233 ~i~vwd~~~ 241 (244)
.|.+||+..
T Consensus 296 ~v~v~d~~~ 304 (331)
T 3u4y_A 296 ELKVFTISG 304 (331)
T ss_dssp EEEEEETTS
T ss_pred cEEEEEecC
Confidence 999999975
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=4.8e-22 Score=150.15 Aligned_cols=199 Identities=8% Similarity=-0.029 Sum_probs=142.3
Q ss_pred ceEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccC------CCceEEEEeCCCCCeEEEEeCC-------
Q psy11529 11 PVTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGH------DLKVTGIDWAPNTNRIVTCSAD------- 76 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d------- 76 (244)
.+..++|+|+|++++ ++..++.|.+||+.+ + +....+... ...+.+++|+|+|+++++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t--~--~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 119 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT--C--KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 119 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTT--T--EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCC--C--cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccc
Confidence 578899999998654 555689999999976 4 444444422 2337889999999999988865
Q ss_pred -----ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeee--------
Q psy11529 77 -----RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK-------- 143 (244)
Q Consensus 77 -----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------- 143 (244)
+.|.+|| +.+++.........+...+.+++|+|+++ +++++. .|.+||..+++.........
T Consensus 120 ~~~~~~~i~~~d--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 194 (349)
T 1jmx_B 120 YVVKPPRLEVFS--TADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSA 194 (349)
T ss_dssp EEECCCEEEEEE--GGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCC
T ss_pred cccCCCeEEEEE--CCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccC
Confidence 8999999 66644322222233455688999999999 555543 39999987765311110000
Q ss_pred --------------------------------------------------------cCCCCceeEEEecC-CCCEEEEee
Q psy11529 144 --------------------------------------------------------KPIKSTITCLDWHP-NNHLLGCGS 166 (244)
Q Consensus 144 --------------------------------------------------------~~~~~~v~~~~~~p-~~~~l~~~~ 166 (244)
......+..++|+| ++++++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~- 273 (349)
T 1jmx_B 195 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV- 273 (349)
T ss_dssp CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-
T ss_pred ccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-
Confidence 00011355778889 99998888
Q ss_pred CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 167 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
++.|.+||+ .+++.+..+.. ...+.+++|+|+|++|++++.++.|.+||+++.
T Consensus 274 -~~~v~~~d~------------------~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 274 -LNRLAKYDL------------------KQRKLIKAANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp -ESEEEEEET------------------TTTEEEEEEEC----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred -cCeEEEEEC------------------ccCeEEEEEcC----CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 889999998 56676666654 445779999999998888888999999999764
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=2e-22 Score=166.26 Aligned_cols=197 Identities=19% Similarity=0.231 Sum_probs=140.2
Q ss_pred ceEEEEEcCCCCeEEEecCC---------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529 11 PVTTHAWNNTRQQLAFTPNN---------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV 81 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d---------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 81 (244)
.|.+++|||||++|++++.+ +.+++||+.+ +....+....+|...+..++|||||++|++++. +.|++
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~ 138 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH--GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYY 138 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS--CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC--CceEeccCCccccccccccEECCCCCEEEEEEC-CeEEE
Confidence 48999999999999998764 7899999987 433333334455566889999999999999875 78999
Q ss_pred EeeeCCCCCceeeEEEeccCc------------------ceEEEEECCCCCeEEEeeCCC--------------------
Q psy11529 82 WTQNNDDKKWKPTLVLLRINR------------------AATCVKWSPLENKFAAGSGAR-------------------- 123 (244)
Q Consensus 82 wd~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~d~-------------------- 123 (244)
|| ..+++..... ..+.. .+.+++|+|||+.|++++.++
T Consensus 139 ~~--~~~g~~~~~~--~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (723)
T 1xfd_A 139 CA--HVGKQAIRVV--STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK 214 (723)
T ss_dssp ES--SSSSCCEEEE--CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred EE--CCCCceEEEe--cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcce
Confidence 99 6776643322 22222 237899999999999987543
Q ss_pred --------------eEEEEEeecCCCceEEEeeecC------CCCceeEEEecCCCCEEEEeeC----CCeEEEEEeeec
Q psy11529 124 --------------LISVCYFESENDWWVAKHIKKP------IKSTITCLDWHPNNHLLGCGST----DFKVRVFSAYIK 179 (244)
Q Consensus 124 --------------~i~i~d~~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~l~~~~~----dg~i~i~d~~~~ 179 (244)
.|++||+.+++. ...... +...+..++|+|||+++++... +..|++||+
T Consensus 215 ~~~~~~~G~~~~~~~l~~~d~~~~~~----~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~--- 287 (723)
T 1xfd_A 215 PYHYPKAGSENPSISLHVIGLNGPTH----DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA--- 287 (723)
T ss_dssp EEECCBTTSCCCEEEEEEEESSSSCC----CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET---
T ss_pred eccCCCCCCCCCeeEEEEEECCCCce----eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC---
Confidence 788999887753 111122 2567899999999998877653 357999998
Q ss_pred ccccCCCCCCCCccccccceeEEecCCCCCCCCe----EEEEEecCCCEEEE--eeCCC------cEEEEe
Q psy11529 180 DIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWI----HSVAFSKDGNKLCW--TSHDG------SINVRM 238 (244)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~--~~~dg------~i~vwd 238 (244)
.+++....+..++ ...+ ..++|+|||+.|+. +..++ .|.+||
T Consensus 288 ---------------~~g~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 288 ---------------TTGVCTKKHEDES--EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp ---------------TTCCEEEEEEEEC--SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred ---------------CCCcceEEEEecc--CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 4555554443321 3333 37899999997765 44666 577777
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=7.5e-22 Score=159.16 Aligned_cols=195 Identities=8% Similarity=-0.014 Sum_probs=139.5
Q ss_pred CCceEEEEEcCCCCeEEEecC-CCeEEEeeeccCCCcceeeeeeccCC-CceEEEEeCCCCCeEEEEeC---CccEEEEe
Q psy11529 9 INPVTTHAWNNTRQQLAFTPN-NQEVHLYQYEKAANDWSQLDVLDGHD-LKVTGIDWAPNTNRIVTCSA---DRNAYVWT 83 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~iwd 83 (244)
..+|.+++|+|||+.||+++. ||+++||++++ + ....+..|. ..+..++|+|+ +.+++++. +....+|.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~--g---~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG--G---ETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEET--T---EEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcC--C---CcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence 568999999999999999877 99999999966 3 334455555 68999999999 77776664 45667776
Q ss_pred eeC-CCCCceeeEEEeccCcceEEEEECCCCCe-EEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529 84 QNN-DDKKWKPTLVLLRINRAATCVKWSPLENK-FAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL 161 (244)
Q Consensus 84 ~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 161 (244)
++. ..+... .+. ........+|+|+++. +++++.++.+.+||+++++. ....... . .+++|+|||++
T Consensus 95 ~~~~~~g~~~---~l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~----~~l~~~~-~--~~~~~spDG~~ 163 (582)
T 3o4h_A 95 VNTSRPGEEQ---RLE-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL----RELARLP-G--FGFVSDIRGDL 163 (582)
T ss_dssp EETTSTTCCE---ECT-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE----EEEEEES-S--CEEEEEEETTE
T ss_pred EeccCCCccc---ccc-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE----EEeecCC-C--ceEEECCCCCE
Confidence 534 122211 222 2223446688888754 33334444555999988754 2222221 2 88999999999
Q ss_pred EEEeeCC----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC--cEE
Q psy11529 162 LGCGSTD----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG--SIN 235 (244)
Q Consensus 162 l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~ 235 (244)
|++++.+ +.|++||+ ..++.. .+..+ ...+..++|||||++|+++..++ .|+
T Consensus 164 la~~~~~~~~~~~i~~~d~------------------~~g~~~-~l~~~---~~~~~~~~~SpDG~~l~~~~~~~~~~i~ 221 (582)
T 3o4h_A 164 IAGLGFFGGGRVSLFTSNL------------------SSGGLR-VFDSG---EGSFSSASISPGMKVTAGLETAREARLV 221 (582)
T ss_dssp EEEEEEEETTEEEEEEEET------------------TTCCCE-EECCS---SCEEEEEEECTTSCEEEEEECSSCEEEE
T ss_pred EEEEEEcCCCCeEEEEEcC------------------CCCCce-EeecC---CCccccceECCCCCEEEEccCCCeeEEE
Confidence 9988776 78999997 444443 56666 77889999999999999888888 899
Q ss_pred EEeCCCC
Q psy11529 236 VRMSQQV 242 (244)
Q Consensus 236 vwd~~~~ 242 (244)
+||+++.
T Consensus 222 ~~d~~~~ 228 (582)
T 3o4h_A 222 TVDPRDG 228 (582)
T ss_dssp EECTTTC
T ss_pred EEcCCCC
Confidence 9998753
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=6.7e-22 Score=162.80 Aligned_cols=210 Identities=13% Similarity=0.101 Sum_probs=145.3
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCc-ceeeeeeccCCCc--------------eEEEEeCCCCCeEEEE
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAND-WSQLDVLDGHDLK--------------VTGIDWAPNTNRIVTC 73 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~-~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~ 73 (244)
...+.+++|+|||++|+++ .++.|++|++.+..+. -+.......+... +.+++|+|||++|+++
T Consensus 120 ~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~ 198 (706)
T 2z3z_A 120 NEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY 198 (706)
T ss_dssp TTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE
T ss_pred cccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE
Confidence 5668889999999999986 5799999998651000 0222222222222 4889999999999988
Q ss_pred e---------------------------------CCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee
Q psy11529 74 S---------------------------------ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120 (244)
Q Consensus 74 ~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 120 (244)
+ .+..|.+|| +.+++.........+...+.+++|+|+|+.|++++
T Consensus 199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d--~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 276 (706)
T 2z3z_A 199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH--LATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAE 276 (706)
T ss_dssp EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE--TTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEE
T ss_pred EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE--CCCCceEeeccCCCCceeEeeEEEECCCCEEEEEE
Confidence 7 457899999 77765332222124556789999999999999887
Q ss_pred CCC-----eEEEEEeecCCCceEEEeeec-CCCCceeEEEecC--CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCc
Q psy11529 121 GAR-----LISVCYFESENDWWVAKHIKK-PIKSTITCLDWHP--NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGS 192 (244)
Q Consensus 121 ~d~-----~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~p--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 192 (244)
.++ .|.+||+.+++.......... .....+..++|+| +|+++++++.+|.++||++.
T Consensus 277 ~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~--------------- 341 (706)
T 2z3z_A 277 VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD--------------- 341 (706)
T ss_dssp ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE---------------
T ss_pred eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE---------------
Confidence 665 899999888732111111111 1112346789999 99999999999999999883
Q ss_pred cccccceeEEecCCCCCCCCeEE-EEEecCCCEEEEeeC-CC----cEEEEeCCC
Q psy11529 193 KSTLGNCLVELNNSSSGGGWIHS-VAFSKDGNKLCWTSH-DG----SINVRMSQQ 241 (244)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~-dg----~i~vwd~~~ 241 (244)
..++.+..+..+ ...+.. ++|+|||+.|+.++. ++ .|..||+.+
T Consensus 342 --~~~~~~~~l~~~---~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 342 --TTGRLIRQVTKG---EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp --TTSCEEEECCCS---SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred --CCCCEEEecCCC---CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 245566666666 667776 799999997766554 44 566677654
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=3e-21 Score=158.92 Aligned_cols=200 Identities=14% Similarity=0.186 Sum_probs=140.9
Q ss_pred eEEEEEcCCCCeEEEec---------------------------------CCCeEEEeeeccCCCcceeeeeeccCCCce
Q psy11529 12 VTTHAWNNTRQQLAFTP---------------------------------NNQEVHLYQYEKAANDWSQLDVLDGHDLKV 58 (244)
Q Consensus 12 v~~~~~~~~~~~l~~~~---------------------------------~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v 58 (244)
+.+++|+|||++|++++ .+..|++||+.+ +....+.....|...+
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~ 260 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT--GKTVYLQTGEPKEKFL 260 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT--TEEEECCCCSCTTCEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC--CceEeeccCCCCceeE
Confidence 58899999999999987 446899999987 4222222223567889
Q ss_pred EEEEeCCCCCeEEEEeCCc-----cEEEEeeeCCCCCceeeEEEeccCc---ceEEEEECC--CCCeEEEeeCCCeEEEE
Q psy11529 59 TGIDWAPNTNRIVTCSADR-----NAYVWTQNNDDKKWKPTLVLLRINR---AATCVKWSP--LENKFAAGSGARLISVC 128 (244)
Q Consensus 59 ~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~---~v~~~~~~~--~~~~l~~~~~d~~i~i~ 128 (244)
.+++|+|||++|++++.++ .|.+|| ..+++............ .+..++|+| +|++++++..++.+++|
T Consensus 261 ~~~~~spdg~~l~~~~~~~~~~~~~v~~~d--~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~ 338 (706)
T 2z3z_A 261 TNLSWSPDENILYVAEVNRAQNECKVNAYD--AETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY 338 (706)
T ss_dssp EEEEECTTSSEEEEEEECTTSCEEEEEEEE--TTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred eeEEEECCCCEEEEEEeCCCCCeeEEEEEE--CCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence 9999999999999877665 899999 77773222222122222 246789999 99999999999999999
Q ss_pred EeecCCCceEEEeeecCCCCceeE-EEecCCCCEEEEeeCC-C----eEEEEEeeecccccCCCCCCCCccccccceeEE
Q psy11529 129 YFESENDWWVAKHIKKPIKSTITC-LDWHPNNHLLGCGSTD-F----KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVE 202 (244)
Q Consensus 129 d~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~~~~~d-g----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (244)
+++.... .......+...+.. ++|+|+|+.|+.++.+ + .|..||+ ..++ ...
T Consensus 339 ~~~~~~~---~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~------------------~~~~-~~~ 396 (706)
T 2z3z_A 339 LYDTTGR---LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI------------------KGGK-TKD 396 (706)
T ss_dssp EEETTSC---EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET------------------TCCC-CEE
T ss_pred EEECCCC---EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc------------------CCCC-cee
Confidence 9984332 23333455566766 7999999877665544 3 4555554 2232 233
Q ss_pred ecCCCCCCCCeEEEEEecCCCEEEEeeCC----CcEEEEeCCC
Q psy11529 203 LNNSSSGGGWIHSVAFSKDGNKLCWTSHD----GSINVRMSQQ 241 (244)
Q Consensus 203 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~ 241 (244)
+. + ...+.+++|+|||++|+..+.+ +.|++||+++
T Consensus 397 l~-~---~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 397 LT-P---ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp SC-C---SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred cc-C---CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 33 3 5678999999999988776543 5699999865
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=2.9e-22 Score=171.29 Aligned_cols=192 Identities=9% Similarity=0.088 Sum_probs=153.8
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc-----------CCCceEEEEeC-CCCCeEEEEeCCcc
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG-----------HDLKVTGIDWA-PNTNRIVTCSADRN 78 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~d~~ 78 (244)
.+...+|+|||+.|+++. ++.|++|++.. ..+..+.. |...+.+++|+ |+|++|++++ ++.
T Consensus 246 ~~~~~~~SpDG~~la~~~-~~~i~~~d~~~-----~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~ 318 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFSK-GGSIYIFNPDT-----EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQ 318 (1045)
T ss_dssp SSCEEEEEESSSCEEEEE-TTEEEEECTTT-----CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTE
T ss_pred CcceeeEcCCCCEEEEEe-CCEEEEecCCc-----eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCE
Confidence 356779999999999884 89999999854 23334443 34578999999 9999999887 789
Q ss_pred EEEEeeeCCCCCceeeEEEeccCc-ceEEEEECCCCCeEEEeeCCCeEE-EEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529 79 AYVWTQNNDDKKWKPTLVLLRINR-AATCVKWSPLENKFAAGSGARLIS-VCYFESENDWWVAKHIKKPIKSTITCLDWH 156 (244)
Q Consensus 79 i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 156 (244)
+.+|+ ...+.. ..+..+.. .+..++|+ +|+.|++++.+..+. +|++..+.. ... ..+...+..++|+
T Consensus 319 i~~~~--~~~~~~---~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~----~~l-~~~~~~~~~~~~S 387 (1045)
T 1k32_A 319 AFIQD--VSGTYV---LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA----EKF-EENLGNVFAMGVD 387 (1045)
T ss_dssp EEEEC--TTSSBE---EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE----EEC-CCCCCSEEEEEEC
T ss_pred EEEEc--CCCCce---EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc----eEe-cCCccceeeeEEC
Confidence 99999 666652 23345666 88999999 999999998888888 888876643 222 2666789999999
Q ss_pred CCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC----
Q psy11529 157 PNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG---- 232 (244)
Q Consensus 157 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---- 232 (244)
|||++|++++.++.|++||+ .+++.......| ...+.+++|||||++|++++.++
T Consensus 388 pDG~~la~~~~~~~v~~~d~------------------~tg~~~~~~~~~---~~~v~~~~~SpDG~~la~~~~~~~~~~ 446 (1045)
T 1k32_A 388 RNGKFAVVANDRFEIMTVDL------------------ETGKPTVIERSR---EAMITDFTISDNSRFIAYGFPLKHGET 446 (1045)
T ss_dssp TTSSEEEEEETTSEEEEEET------------------TTCCEEEEEECS---SSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred CCCCEEEEECCCCeEEEEEC------------------CCCceEEeccCC---CCCccceEECCCCCeEEEEecCccccc
Confidence 99999999999999999998 566666666667 78899999999999998887654
Q ss_pred ------cEEEEeCCC
Q psy11529 233 ------SINVRMSQQ 241 (244)
Q Consensus 233 ------~i~vwd~~~ 241 (244)
.|++||+.+
T Consensus 447 ~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 447 DGYVMQAIHVYDMEG 461 (1045)
T ss_dssp CSCCEEEEEEEETTT
T ss_pred cCCCCCeEEEEECCC
Confidence 899999875
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=167.09 Aligned_cols=190 Identities=13% Similarity=0.189 Sum_probs=134.1
Q ss_pred EEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC---ceEEEEeCCCCCeEEEEeC---------CccEEE
Q psy11529 14 THAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL---KVTGIDWAPNTNRIVTCSA---------DRNAYV 81 (244)
Q Consensus 14 ~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~i 81 (244)
+++|+|+|+++++ +.|+.|++|++.+ + +....+..|.. .+.+++|||||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~--g--~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIET--G--QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSS--C--CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCC--C--cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 7899999965555 4689999999987 4 34444444433 4899999999999998876 689999
Q ss_pred EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC-------------
Q psy11529 82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS------------- 148 (244)
Q Consensus 82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~------------- 148 (244)
|| +.+++...... ....+..++|+|||+.|+++. ++.|++|++.+++. ......++..
T Consensus 95 ~d--~~~g~~~~~~~---l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~---~~l~~~~~~~~v~~g~~~~v~~e 165 (719)
T 1z68_A 95 YD--LSNGEFVRGNE---LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP---FQITFNGRENKIFNGIPDWVYEE 165 (719)
T ss_dssp EE--TTTTEECCSSC---CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC---EECCCCCBTTTEEESSCCHHHHH
T ss_pred EE--CCCCcccccee---cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc---EEEecCCCcCCeEcccccceeee
Confidence 99 77776411011 125688999999999999986 78999999987764 1111122222
Q ss_pred ----ceeEEEecCCCCEEEEeeCCC----------------------------------eEEEEEeeecccccCCCCCCC
Q psy11529 149 ----TITCLDWHPNNHLLGCGSTDF----------------------------------KVRVFSAYIKDIESAPQSTNW 190 (244)
Q Consensus 149 ----~v~~~~~~p~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~~~ 190 (244)
...+++|+|||++|++++.|. .|++||+.
T Consensus 166 e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~------------- 232 (719)
T 1z68_A 166 EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT------------- 232 (719)
T ss_dssp HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS-------------
T ss_pred ecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC-------------
Confidence 125899999999999887542 67777773
Q ss_pred Ccccccccee--------EEecCCCCCCCCeEEEEEecCCCEEEEeeCC----CcEEEEe
Q psy11529 191 GSKSTLGNCL--------VELNNSSSGGGWIHSVAFSKDGNKLCWTSHD----GSINVRM 238 (244)
Q Consensus 191 ~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd 238 (244)
.++.. ..+..| ...+..++|+||++++++.... ..|.+||
T Consensus 233 -----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 233 -----YPAYVGPQEVPVPAMIASS---DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp -----CHHHHCCEECCCCHHHHTS---CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred -----CCCccceeEccCCccCCCC---cceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 22221 112345 7789999999998877775432 2488888
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.89 E-value=2.6e-20 Score=141.89 Aligned_cols=205 Identities=9% Similarity=0.009 Sum_probs=138.4
Q ss_pred eEEEEEcCCCCe--EEEec-------------CCCeEEEeeeccCCCcceeeeeec----cCCCceEEEEeCCCCCeEEE
Q psy11529 12 VTTHAWNNTRQQ--LAFTP-------------NNQEVHLYQYEKAANDWSQLDVLD----GHDLKVTGIDWAPNTNRIVT 72 (244)
Q Consensus 12 v~~~~~~~~~~~--l~~~~-------------~d~~v~v~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~ 72 (244)
+.+++|+|+|++ ++++. .++.+.+|++... + +....+. .+...+.+++|+|+|+++++
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~-g--~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET-G--KLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT-C--CEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC-C--cCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 456889999994 44553 6889999999642 2 2222222 24567899999999998887
Q ss_pred EeC-CccEEEEeeeCC-CCCceeeEEEe--ccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEE--Eee-ec
Q psy11529 73 CSA-DRNAYVWTQNND-DKKWKPTLVLL--RINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVA--KHI-KK 144 (244)
Q Consensus 73 ~~~-d~~i~iwd~~~~-~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~--~~~-~~ 144 (244)
+.. ++.|.+|| .. +++........ .+...+..++|+|+|+++++++. ++.+.+|+++........ ... ..
T Consensus 162 ~~~~~~~v~~~~--~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~ 239 (365)
T 1jof_A 162 ADLTANKLWTHR--KLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp EETTTTEEEEEE--ECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EcCCCCEEEEEE--ECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC
Confidence 654 67999999 55 56543322222 13466899999999999888775 789999998753221111 111 11
Q ss_pred C-----CCC------ceeEEE-ecCCCCEEEEeeCC-C-----eEEEEEeeecccccCCCCCCCCccccccceeE---Ee
Q psy11529 145 P-----IKS------TITCLD-WHPNNHLLGCGSTD-F-----KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV---EL 203 (244)
Q Consensus 145 ~-----~~~------~v~~~~-~~p~~~~l~~~~~d-g-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 203 (244)
+ +.. .+..++ |+|||++|++++.+ . .|.+|++. ..++... ..
T Consensus 240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~-----------------~~g~~~~~~~~~ 302 (365)
T 1jof_A 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR-----------------DCGSIEKQLFLS 302 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC-----------------TTSCEEEEEEEE
T ss_pred CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC-----------------CCCCEEEeeeee
Confidence 1 111 588999 99999988776543 2 89999983 1233322 13
Q ss_pred cCCCCCCCCeEEEEEec---CCCEEEEeeC-CCcEEEEeCCC
Q psy11529 204 NNSSSGGGWIHSVAFSK---DGNKLCWTSH-DGSINVRMSQQ 241 (244)
Q Consensus 204 ~~~~~~~~~v~~~~~s~---~~~~l~~~~~-dg~i~vwd~~~ 241 (244)
..+ ...+..++|+| ||++|++++. ++.|.+|+++.
T Consensus 303 ~~~---~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 303 PTP---TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp ECS---SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ecC---CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 223 44567889999 8999998876 48999998753
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.89 E-value=2.6e-20 Score=141.93 Aligned_cols=208 Identities=9% Similarity=0.012 Sum_probs=137.7
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeec-cCCCcceeeeeeccCCCceEEEEeCCCCCe--EEEEe------------
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYE-KAANDWSQLDVLDGHDLKVTGIDWAPNTNR--IVTCS------------ 74 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~------------ 74 (244)
..+..++|+|+|++|++++.+ .|.+|++. + +..........+ +....++|+|+|++ ++++.
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~--g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSP--TEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEET--TEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCC--CCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 467789999999999888877 99999996 4 322212122211 23556899999994 44553
Q ss_pred -CCccEEEEeeeCC-CCCceeeEEEe--ccCcceEEEEECCCCCeEEEeeC-CCeEEEEEee-cCCCceEEEeeec-CCC
Q psy11529 75 -ADRNAYVWTQNND-DKKWKPTLVLL--RINRAATCVKWSPLENKFAAGSG-ARLISVCYFE-SENDWWVAKHIKK-PIK 147 (244)
Q Consensus 75 -~d~~i~iwd~~~~-~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~-~~~~~~~~~~~~~-~~~ 147 (244)
.++.+.+|+ +. +++........ .+...+.+++|+|+|+++++++. ++.|++|+++ +++. ........ .+.
T Consensus 116 ~~~g~v~v~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~g 192 (365)
T 1jof_A 116 KFAGYGNVFS--VSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV-ELVGSVDAPDPG 192 (365)
T ss_dssp SSCCEEEEEE--ECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE-EEEEEEECSSTT
T ss_pred cCCceEEEEc--cCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE-EEeeeEecCCCC
Confidence 688999999 44 45543222221 24567899999999998887764 6899999998 5543 11111211 234
Q ss_pred CceeEEEecCCCCEEEEeeC-CCeEEEEEeeecccccCCCCCCCCcccccccee------EEecCCCCC-CC------Ce
Q psy11529 148 STITCLDWHPNNHLLGCGST-DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL------VELNNSSSG-GG------WI 213 (244)
Q Consensus 148 ~~v~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~------~v 213 (244)
..+..++|+|+|+++++++. ++.|.+|++.. .+++.. ..+...... .. .+
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~----------------~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 256 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDP----------------ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYR 256 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECT----------------TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEE
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEEeC----------------CCCcEEEccceEEcCCCCcCCccccccccccc
Confidence 67899999999998888775 68999998732 122221 111111000 11 48
Q ss_pred EEEE-EecCCCEEEEeeCC-C-----cEEEEeCC
Q psy11529 214 HSVA-FSKDGNKLCWTSHD-G-----SINVRMSQ 240 (244)
Q Consensus 214 ~~~~-~s~~~~~l~~~~~d-g-----~i~vwd~~ 240 (244)
..++ |+|||++|++++.+ + .|.+|+++
T Consensus 257 ~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred ccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 8999 99999988776543 2 89999985
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=4.2e-19 Score=134.97 Aligned_cols=211 Identities=5% Similarity=-0.047 Sum_probs=136.1
Q ss_pred CCceEEEEEcCCCCeEEEec-CCCeEEEeeeccCCCcceeeeee---c--------cCCCceEEEEeCCCCCeEEEEe-C
Q psy11529 9 INPVTTHAWNNTRQQLAFTP-NNQEVHLYQYEKAANDWSQLDVL---D--------GHDLKVTGIDWAPNTNRIVTCS-A 75 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~-~d~~v~v~~~~~~~~~~~~~~~~---~--------~~~~~v~~~~~~~~~~~l~~~~-~ 75 (244)
......+++ ++++|++++ .++.|.+|++... +........ . .+...+.+++|+|+|+++++++ .
T Consensus 99 ~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 99 GADPCYLTT--NGKNIVTANYSGGSITVFPIGQD-GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTT-SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCC-CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 345566777 788777665 5789999999642 111111111 1 1233468899999999776655 4
Q ss_pred CccEEEEeeeCCCC----C-ceee----EEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceEEEe-eec
Q psy11529 76 DRNAYVWTQNNDDK----K-WKPT----LVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWVAKH-IKK 144 (244)
Q Consensus 76 d~~i~iwd~~~~~~----~-~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~~~ 144 (244)
++.|.+|+++...+ + .... .........+..++|+|+|+++++++ .++.|.+|+++++........ ...
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~ 255 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADT 255 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCS
T ss_pred CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCC
Confidence 78999999533232 2 2111 12223455678999999999888777 589999999986532111111 112
Q ss_pred CCCCceeEEEecCCCCEEEEeeCC--CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC
Q psy11529 145 PIKSTITCLDWHPNNHLLGCGSTD--FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG 222 (244)
Q Consensus 145 ~~~~~v~~~~~~p~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 222 (244)
.+......++|+|||++|+++..+ +.|.+|++.... ...+.+..+.. ...+..++|+|||
T Consensus 256 ~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~--------------g~~~~~~~~~~----g~~~~~~~~spdg 317 (361)
T 3scy_A 256 VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN--------------GTLTKVGYQLT----GIHPRNFIITPNG 317 (361)
T ss_dssp SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT--------------CCEEEEEEEEC----SSCCCEEEECTTS
T ss_pred CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC--------------CcEEEeeEecC----CCCCceEEECCCC
Confidence 223456899999999988776654 899999983110 01123333332 3457899999999
Q ss_pred CEEEEee-CCCcEEEEeCC
Q psy11529 223 NKLCWTS-HDGSINVRMSQ 240 (244)
Q Consensus 223 ~~l~~~~-~dg~i~vwd~~ 240 (244)
++|++++ .++.|.+|+++
T Consensus 318 ~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 318 KYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEEE
Confidence 9888887 67899997554
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=1.1e-20 Score=142.68 Aligned_cols=156 Identities=11% Similarity=0.022 Sum_probs=111.0
Q ss_pred EEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCC-CceEEEEeCCCCCeEE-EEeCCccEEEEeeeCCCCCc
Q psy11529 14 THAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHD-LKVTGIDWAPNTNRIV-TCSADRNAYVWTQNNDDKKW 91 (244)
Q Consensus 14 ~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~ 91 (244)
.++++++++++++++.++.|++||+.+ + +....+..+. ..+..++|+|++++++ +...++.|.+|| ..+++.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~--~--~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d--~~t~~~ 77 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVAS--D--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID--LDTCKN 77 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTT--T--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE--TTTTEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCC--C--cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEe--CCCCcE
Confidence 457888899999999999999999977 4 5555555332 2578899999998665 455689999999 777764
Q ss_pred eeeEEEecc----CcceEEEEECCCCCeEEEeeCC------------CeEEEEEeecCCCceEEEeeecCCCCceeEEEe
Q psy11529 92 KPTLVLLRI----NRAATCVKWSPLENKFAAGSGA------------RLISVCYFESENDWWVAKHIKKPIKSTITCLDW 155 (244)
Q Consensus 92 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 155 (244)
......... ...+..++|+|+|+++++++.+ +.|.+||+.+++........ .+...+.+++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~ 155 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRA 155 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEE
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--cCCCcccceeE
Confidence 433322111 2337889999999999998865 89999999875431111111 12346889999
Q ss_pred cCCCCEEEEeeCCCeEEEEEeeecc
Q psy11529 156 HPNNHLLGCGSTDFKVRVFSAYIKD 180 (244)
Q Consensus 156 ~p~~~~l~~~~~dg~i~i~d~~~~~ 180 (244)
+|+|+ +++++ +.|.+||+...+
T Consensus 156 s~dg~-l~~~~--~~i~~~d~~~~~ 177 (349)
T 1jmx_B 156 ADDGS-LYVAG--PDIYKMDVKTGK 177 (349)
T ss_dssp CTTSC-EEEES--SSEEEECTTTCC
T ss_pred CCCCc-EEEcc--CcEEEEeCCCCc
Confidence 99999 55544 349999986544
No 160
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=6.9e-20 Score=137.62 Aligned_cols=203 Identities=12% Similarity=-0.005 Sum_probs=136.4
Q ss_pred CeEEEecCCCeEEEeeeccCCCcceeeeeeccCC-C-ceEEEEeCCCCCeEE-EEeCCccEEEEeeeCCCCCceeeEEEe
Q psy11529 22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHD-L-KVTGIDWAPNTNRIV-TCSADRNAYVWTQNNDDKKWKPTLVLL 98 (244)
Q Consensus 22 ~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~ 98 (244)
+++++++.++.|++||+.+ + +....+.... . .+..++|+|++++++ ++..++.|.+|| ..+++....+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~--~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d--~~~~~~~~~~~~~ 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK--M--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID--LVTGETLGRIDLS 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTT--T--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE--TTTCCEEEEEECC
T ss_pred cEEEEcCCCCeEEEEECCC--C--cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE--CCCCCeEeeEEcC
Confidence 4788889999999999977 4 5555555222 1 578899999998765 555678999999 7777754444322
Q ss_pred c---cCcceEEEEECCCCCeEEEee------------CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 99 R---INRAATCVKWSPLENKFAAGS------------GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 99 ~---~~~~v~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
. +...+..++|+|++++++++. .++.|.+||+.+.+. ..... ....+..++|+|++++|+
T Consensus 76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~--~~~~~~~~~~s~dg~~l~ 150 (337)
T 1pby_B 76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR---RKAFE--APRQITMLAWARDGSKLY 150 (337)
T ss_dssp BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE---EEEEE--CCSSCCCEEECTTSSCEE
T ss_pred CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE---EEEEe--CCCCcceeEECCCCCEEE
Confidence 1 122677899999999998886 579999999987653 12221 234678899999999888
Q ss_pred EeeCCCeEEEEEeeecccccCC------CCCCCCcc--------ccccc----------------------eeEE-----
Q psy11529 164 CGSTDFKVRVFSAYIKDIESAP------QSTNWGSK--------STLGN----------------------CLVE----- 202 (244)
Q Consensus 164 ~~~~dg~i~i~d~~~~~~~~~~------~~~~~~~~--------~~~~~----------------------~~~~----- 202 (244)
++ ++.|++||+...+..... ....+... ..... .+..
T Consensus 151 ~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 228 (337)
T 1pby_B 151 GL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp EE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred Ee--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence 87 688999998655432110 00000000 00000 0111
Q ss_pred -------ecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 203 -------LNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 203 -------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
+..+ ...+.+++|+|||++|+++ ++.|.+||+++.
T Consensus 229 ~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~ 270 (337)
T 1pby_B 229 GEMAMREVRIM---DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN 270 (337)
T ss_dssp CCEEEEEEEEC---SSCEEEEEECTTSSEEEEE--ESEEEEEETTTT
T ss_pred CCceEeecCCC---CCceeeEEECCCCCEEEEe--CCeEEEEECCCC
Confidence 1122 3456789999999999888 789999998753
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=1.4e-20 Score=155.59 Aligned_cols=213 Identities=12% Similarity=0.128 Sum_probs=139.9
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCc-----eEEEEeCCCCCeEEEEeCC---------
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLK-----VTGIDWAPNTNRIVTCSAD--------- 76 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d--------- 76 (244)
...+++|+|||++++++ |+.|++|++.+ + +....+.+|... ...++|||||++|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEY--G--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTT--C--CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCC--C--ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 45689999999988886 89999999987 4 444556655432 3458899999999988875
Q ss_pred ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCC--------
Q psy11529 77 RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKS-------- 148 (244)
Q Consensus 77 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-------- 148 (244)
+.+.+|| +.+++... +..+...+..++|||||+.||.+. ++.|++|++.++.. ......++..
T Consensus 92 ~~~~~~d--~~~~~~~~---l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~---~~lt~~g~~~~~~~g~~~ 162 (740)
T 4a5s_A 92 ASYDIYD--LNKRQLIT---EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS---YRITWTGKEDIIYNGITD 162 (740)
T ss_dssp EEEEEEE--TTTTEECC---SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC---EECCSCCBTTTEEESBCC
T ss_pred eEEEEEE--CCCCcEEE---cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCce---EEEcCCCCccceecCccc
Confidence 5667999 77776432 345667899999999999999985 68899999887764 1212222221
Q ss_pred ---------ceeEEEecCCCCEEEEeeCCC-eEEEEEeeeccccc-----------CCCCCC------CCccccc---cc
Q psy11529 149 ---------TITCLDWHPNNHLLGCGSTDF-KVRVFSAYIKDIES-----------APQSTN------WGSKSTL---GN 198 (244)
Q Consensus 149 ---------~v~~~~~~p~~~~l~~~~~dg-~i~i~d~~~~~~~~-----------~~~~~~------~~~~~~~---~~ 198 (244)
....+.|||||+.|+.++.|. .+.+|++....... +..... ..-.... ++
T Consensus 163 ~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~ 242 (740)
T 4a5s_A 163 WVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242 (740)
T ss_dssp HHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS
T ss_pred ccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC
Confidence 123589999999999876543 46677653221100 000000 0000012 21
Q ss_pred --eeEEec------CCCCCCCCeEEEEEecCCCEEEEeeC----CCcEEEEeCCC
Q psy11529 199 --CLVELN------NSSSGGGWIHSVAFSKDGNKLCWTSH----DGSINVRMSQQ 241 (244)
Q Consensus 199 --~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~ 241 (244)
....+. ++ ...+..++|+|||++++.... +..|++||+.+
T Consensus 243 ~~~~~~l~~~~~~~~~---~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 243 NATSIQITAPASMLIG---DHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp CCCEEEECCCHHHHTS---CEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred cceEEEecCCccCCCC---CeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 122232 24 677999999999997665533 33799999765
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=159.03 Aligned_cols=199 Identities=12% Similarity=0.111 Sum_probs=133.8
Q ss_pred ceEEEEEcCCCCeEEEecC---------CCeEEEeeeccCCCcceee--eeeccCCCceEEEEeCCCCCeEEEEeCCccE
Q psy11529 11 PVTTHAWNNTRQQLAFTPN---------NQEVHLYQYEKAANDWSQL--DVLDGHDLKVTGIDWAPNTNRIVTCSADRNA 79 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~---------d~~v~v~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 79 (244)
.+.+++|||||++|++++. ++.|++||+.+ + +.. ..+ ...+..++|||||+.|+++. ++.|
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~--g--~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i 132 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN--G--EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNI 132 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--T--EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEE
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC--C--ccccceec---CcccccceECCCCCEEEEEE-CCeE
Confidence 3889999999999998876 68999999987 4 221 222 25688899999999999886 7899
Q ss_pred EEEeeeCCCCCceeeEEEeccCcc-----------------eEEEEECCCCCeEEEeeCCC-------------------
Q psy11529 80 YVWTQNNDDKKWKPTLVLLRINRA-----------------ATCVKWSPLENKFAAGSGAR------------------- 123 (244)
Q Consensus 80 ~iwd~~~~~~~~~~~~~~~~~~~~-----------------v~~~~~~~~~~~l~~~~~d~------------------- 123 (244)
++|+ ..+++..... ..++... ..+++|+|||++|++++.|.
T Consensus 133 ~~~~--~~~g~~~~l~-~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~ 209 (719)
T 1z68_A 133 YLKQ--RPGDPPFQIT-FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRT 209 (719)
T ss_dssp EEES--STTSCCEECC-CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEE
T ss_pred EEEe--CCCCCcEEEe-cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccc
Confidence 9999 6666543221 1122221 25899999999999987542
Q ss_pred ---------------eEEEEEeecCCCc-eEEE---eeecCCCCceeEEEecCCCCEEEEeeCC----CeEEEEE----e
Q psy11529 124 ---------------LISVCYFESENDW-WVAK---HIKKPIKSTITCLDWHPNNHLLGCGSTD----FKVRVFS----A 176 (244)
Q Consensus 124 ---------------~i~i~d~~~~~~~-~~~~---~~~~~~~~~v~~~~~~p~~~~l~~~~~d----g~i~i~d----~ 176 (244)
.+++||+.+++.. .... .....+...+..++|+||++++++.... ..|.+|| +
T Consensus 210 ~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~ 289 (719)
T 1z68_A 210 INIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDW 289 (719)
T ss_dssp EEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSS
T ss_pred eeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCC
Confidence 6788888776421 0000 1122466788999999998877774432 2488888 5
Q ss_pred eecccccCCCCCCCCccccccceeEEe----cCCCCCCCCeE-----EEEEecCCCEEEE--eeCCC--cEEEEeCCC
Q psy11529 177 YIKDIESAPQSTNWGSKSTLGNCLVEL----NNSSSGGGWIH-----SVAFSKDGNKLCW--TSHDG--SINVRMSQQ 241 (244)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~-----~~~~s~~~~~l~~--~~~dg--~i~vwd~~~ 241 (244)
.+++....+ ..| ...+. .++|+|||+.|+. +..+| .|.+||+..
T Consensus 290 ------------------~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~ 346 (719)
T 1z68_A 290 ------------------QTWDCPKTQEHIEESR---TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV 346 (719)
T ss_dssp ------------------SSEECCGGGEEEEECS---SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS
T ss_pred ------------------CCCceEEEEecccccC---CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC
Confidence 223332222 234 55555 7899999996554 44555 467777654
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.85 E-value=2.1e-18 Score=126.96 Aligned_cols=202 Identities=13% Similarity=0.114 Sum_probs=143.8
Q ss_pred CceEEEEE-cCCCCeEEEecC-CCeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 10 NPVTTHAW-NNTRQQLAFTPN-NQEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 10 ~~v~~~~~-~~~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
..+.++++ .++++++++... ++.|.+|+.++ +....+. .+...+.+++++|+|+.+++...++.|.+|| .
T Consensus 77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g-----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~--~ 149 (286)
T 1q7f_A 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG-----QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFD--Q 149 (286)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEECTTS-----CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEEC--T
T ss_pred cCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC-----cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEc--C
Confidence 46789999 467776666533 78999999554 4444443 2345789999999999888777789999999 4
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeee-cCCCCceeEEEecCCCCEEEEe
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK-KPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
. ++.........+...+..++++|+++.+++...++.|++||.+.. . ..... ..+...+..++++|+|+++++.
T Consensus 150 ~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~---~~~~~~~g~~~~p~~i~~d~~G~l~v~~ 224 (286)
T 1q7f_A 150 N-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-Y---LRQIGGEGITNYPIGVGINSNGEILIAD 224 (286)
T ss_dssp T-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-E---EEEESCTTTSCSEEEEEECTTCCEEEEE
T ss_pred C-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-E---EEEEccCCccCCCcEEEECCCCCEEEEe
Confidence 3 443222221133456899999999987777777899999997432 1 11111 1223578899999999988888
Q ss_pred eCCC-eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCCCC
Q psy11529 166 STDF-KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVLP 244 (244)
Q Consensus 166 ~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~p 244 (244)
..++ .|.+||. .++.+..+..+.. ...+.+++++|+|+++++ +.|+.|++|++....|
T Consensus 225 ~~~~~~i~~~~~-------------------~g~~~~~~~~~~~-~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 225 NHNNFNLTIFTQ-------------------DGQLISALESKVK-HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp CSSSCEEEEECT-------------------TSCEEEEEEESSC-CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred CCCCEEEEEECC-------------------CCCEEEEEcccCC-CCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 7776 9999995 3555555554310 234789999999987777 5799999999987655
No 164
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=1.9e-20 Score=150.96 Aligned_cols=190 Identities=9% Similarity=0.048 Sum_probs=134.6
Q ss_pred CceEEEEEcCCCCeEEEecC---CCeEEEeeecc--CCCcceeeeeeccCCCceEEEEeCCCCCe-EEEEeCCccEEEEe
Q psy11529 10 NPVTTHAWNNTRQQLAFTPN---NQEVHLYQYEK--AANDWSQLDVLDGHDLKVTGIDWAPNTNR-IVTCSADRNAYVWT 83 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~---d~~v~v~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd 83 (244)
..+..++|+|| +.+++++. +....+|.+.. .+. .. .+... ..+...+|+|+++. +++.+.++.+.+||
T Consensus 65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~---~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d 138 (582)
T 3o4h_A 65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGE---EQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYA 138 (582)
T ss_dssp SEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTC---CE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEE
T ss_pred cccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCc---cc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEE
Confidence 57899999999 77766654 45566665532 212 22 33322 23346678887763 23333445566999
Q ss_pred eeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC----CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529 84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA----RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN 159 (244)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 159 (244)
+.+++..... .+.. .+++|+|||++|++++.+ ..|++||+.+++. .....+...+..++|+|||
T Consensus 139 --~~~g~~~~l~---~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-----~~l~~~~~~~~~~~~SpDG 206 (582)
T 3o4h_A 139 --LDGGGLRELA---RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-----RVFDSGEGSFSSASISPGM 206 (582)
T ss_dssp --EETTEEEEEE---EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-----EEECCSSCEEEEEEECTTS
T ss_pred --ccCCcEEEee---cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-----eEeecCCCccccceECCCC
Confidence 6676533322 2233 789999999999988776 7799999887764 2345667788999999999
Q ss_pred CEEEEeeCCC--eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEE--------EecCCCEEEEee
Q psy11529 160 HLLGCGSTDF--KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVA--------FSKDGNKLCWTS 229 (244)
Q Consensus 160 ~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~ 229 (244)
+.|+++..++ .|++||+ ..++.. .+..+ ...+..++ |+|||.++++++
T Consensus 207 ~~l~~~~~~~~~~i~~~d~------------------~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~spdg~~~~~~~ 264 (582)
T 3o4h_A 207 KVTAGLETAREARLVTVDP------------------RDGSVE-DLELP---SKDFSSYRPTAITWLGYLPDGRLAVVAR 264 (582)
T ss_dssp CEEEEEECSSCEEEEEECT------------------TTCCEE-ECCCS---CSHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred CEEEEccCCCeeEEEEEcC------------------CCCcEE-EccCC---CcChhhhhhccccceeEcCCCcEEEEEE
Confidence 9999888888 8999998 445555 55555 55666666 999999899999
Q ss_pred CCCcEEEEeC
Q psy11529 230 HDGSINVRMS 239 (244)
Q Consensus 230 ~dg~i~vwd~ 239 (244)
.|+.+++|++
T Consensus 265 ~~g~~~l~~~ 274 (582)
T 3o4h_A 265 REGRSAVFID 274 (582)
T ss_dssp ETTEEEEEET
T ss_pred cCCcEEEEEE
Confidence 9999999987
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=3.4e-19 Score=136.62 Aligned_cols=195 Identities=9% Similarity=0.070 Sum_probs=132.9
Q ss_pred EEEcCCCCeEEEecC-CC--eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCc
Q psy11529 15 HAWNNTRQQLAFTPN-NQ--EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW 91 (244)
Q Consensus 15 ~~~~~~~~~l~~~~~-d~--~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 91 (244)
.+|+|||++|++++. ++ .|.+|++.+ + +......++...+..+.|+|+|+.|+.++.++.+++|| +.+++.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g--~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d--~~~g~~ 114 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT--Q--VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVD--LATLEE 114 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT--C--EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEE--TTTCCE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCC--C--ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEE--CCCCcc
Confidence 789999999998877 66 477888876 4 44444555555555778999999999999899999999 777764
Q ss_pred eeeEEEeccCcceEEE--EECCCCCeEEEe----------------------eCCCeEEEEEeecCCCceEEEeeecCCC
Q psy11529 92 KPTLVLLRINRAATCV--KWSPLENKFAAG----------------------SGARLISVCYFESENDWWVAKHIKKPIK 147 (244)
Q Consensus 92 ~~~~~~~~~~~~v~~~--~~~~~~~~l~~~----------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 147 (244)
..... .+...+... .++|+++.++.. ..+..|.+||+.+++. .....+.
T Consensus 115 ~~~~~--~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~l~~~~ 187 (388)
T 3pe7_A 115 NVVYQ--VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-----TVILQEN 187 (388)
T ss_dssp EEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-----EEEEEES
T ss_pred eeeee--chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce-----EEeecCC
Confidence 43332 233334333 348999988742 2346788888887753 2222344
Q ss_pred CceeEEEecC-CCCEEEEeeCC------CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec
Q psy11529 148 STITCLDWHP-NNHLLGCGSTD------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK 220 (244)
Q Consensus 148 ~~v~~~~~~p-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 220 (244)
..+..+.|+| ||+.|+....+ ..|.++|+ . +.....+..+. ....+..++|+|
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~------------------~-~~~~~~l~~~~-~~~~~~~~~~sp 247 (388)
T 3pe7_A 188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE------------------D-GTNMRKVKTHA-EGESCTHEFWVP 247 (388)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET------------------T-SCCCEESCCCC-TTEEEEEEEECT
T ss_pred ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC------------------C-CCceEEeeeCC-CCcccccceECC
Confidence 6789999999 99988877653 26777775 2 22233333331 013578899999
Q ss_pred CCCEEEEeeC-CC----cEEEEeCCCC
Q psy11529 221 DGNKLCWTSH-DG----SINVRMSQQV 242 (244)
Q Consensus 221 ~~~~l~~~~~-dg----~i~vwd~~~~ 242 (244)
||+.|+..+. ++ .|++||+.+.
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 248 DGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp TSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred CCCEEEEEecCCCCCcceEEEEecCCC
Confidence 9997765443 22 3999998753
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=2.6e-19 Score=148.09 Aligned_cols=204 Identities=14% Similarity=0.100 Sum_probs=132.9
Q ss_pred EEEEEcCCCCeEEEecCC---------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEe
Q psy11529 13 TTHAWNNTRQQLAFTPNN---------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT 83 (244)
Q Consensus 13 ~~~~~~~~~~~l~~~~~d---------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 83 (244)
..++|||||++|++++.+ +.+.+||+.+ + ....+..|...+..++|||||+.||.+. ++.|++|+
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~--~---~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~ 138 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK--R---QLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKI 138 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--T---EECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEES
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCC--C---cEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEE
Confidence 347899999999998765 5677999988 4 3445677788899999999999999885 78999999
Q ss_pred eeCCCCCceeeEEEeccCc-----------------ceEEEEECCCCCeEEEeeCCC-----------------------
Q psy11529 84 QNNDDKKWKPTLVLLRINR-----------------AATCVKWSPLENKFAAGSGAR----------------------- 123 (244)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~l~~~~~d~----------------------- 123 (244)
..+++.... ...++.. ....+.|||||+.||..+.|.
T Consensus 139 --~~~~~~~~l-t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~ 215 (740)
T 4a5s_A 139 --EPNLPSYRI-TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVR 215 (740)
T ss_dssp --STTSCCEEC-CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEE
T ss_pred --CCCCceEEE-cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCccee
Confidence 666653321 1112221 123589999999999875321
Q ss_pred -------------eEEEEEeec---CCCceEEEeeec-----CCCCceeEEEecCCCCEEEEeeC----CCeEEEEEeee
Q psy11529 124 -------------LISVCYFES---ENDWWVAKHIKK-----PIKSTITCLDWHPNNHLLGCGST----DFKVRVFSAYI 178 (244)
Q Consensus 124 -------------~i~i~d~~~---~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l~~~~~----dg~i~i~d~~~ 178 (244)
.|.+||+.+ ++... ...... .+...+..++|+|||+.++.... +..|.+||+.+
T Consensus 216 ~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 216 VPYPKAGAVNPTVKFFVVNTDSLSSVTNAT-SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp EECCBTTSCCCEEEEEEEETTSCCSSSCCC-EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred ecCCCCcCcCCeeEEEEEECCCCCCCCcce-EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 467777777 52100 112211 25667899999999997665433 34799999843
Q ss_pred cccccCCCCCCCCccccccceeEEe--cCCCCCCCCeE-----EEEEecCCCEEE-Eee-CCC--cEEEEeCCC
Q psy11529 179 KDIESAPQSTNWGSKSTLGNCLVEL--NNSSSGGGWIH-----SVAFSKDGNKLC-WTS-HDG--SINVRMSQQ 241 (244)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~-----~~~~s~~~~~l~-~~~-~dg--~i~vwd~~~ 241 (244)
.+... .......+ ..+ ...+. .++|+|||+.|+ ..+ .+| .|++||+..
T Consensus 295 g~~~~------------~~~~~~~l~~~~~---~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 295 SSGRW------------NCLVARQHIEMST---TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp TTTEE------------EECGGGCEEEECS---SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred Ccccc------------ceeEEEEeeeccC---CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 22000 00001111 223 33333 788999999776 555 344 588888764
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=1.5e-18 Score=141.89 Aligned_cols=197 Identities=12% Similarity=0.027 Sum_probs=131.1
Q ss_pred EEEEc--CCCCe-EEEecC-CCeEEEeeeccCC-Ccceeeeeecc-----CCCceEEEEeCCCCCeEEEEeCC-------
Q psy11529 14 THAWN--NTRQQ-LAFTPN-NQEVHLYQYEKAA-NDWSQLDVLDG-----HDLKVTGIDWAPNTNRIVTCSAD------- 76 (244)
Q Consensus 14 ~~~~~--~~~~~-l~~~~~-d~~v~v~~~~~~~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d------- 76 (244)
...|+ |||+. |++++. +..|+++++...+ + ....+.. |...+..++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~---~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA---VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPS 157 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC---CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTT
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC---CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCC
Confidence 45565 99998 777654 5567666665000 1 1233443 56788999999999999988876
Q ss_pred ---ccEEEEeeeCCC------CCceeeEEEe-ccCcceEEEEECCCCCeEEEeeCC--------CeEEEEEee-cCCCce
Q psy11529 77 ---RNAYVWTQNNDD------KKWKPTLVLL-RINRAATCVKWSPLENKFAAGSGA--------RLISVCYFE-SENDWW 137 (244)
Q Consensus 77 ---~~i~iwd~~~~~------~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~-~~~~~~ 137 (244)
..|++|| +.+ ++. ..+. .+...+..++|+|||++|+.++.+ ..|.+||++ ++.. .
T Consensus 158 ~~~~~i~~~~--~~~~~~~~~~~~---~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~-~ 231 (662)
T 3azo_A 158 DVRRFLAAVP--LDGSAAADRSAV---RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF-A 231 (662)
T ss_dssp CEEEEEEEEE--TTSTTTTCGGGS---EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE-E
T ss_pred CceeEEEEEE--CCCCccccCCce---eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc-c
Confidence 5899999 666 442 2333 455678889999999999987754 479999998 4421 1
Q ss_pred EEEeeecCCCCceeEEEecCCCCEEEEeeCCC--eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCC-----C
Q psy11529 138 VAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF--KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSG-----G 210 (244)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 210 (244)
........+...+..+.|+|||++++++..++ .|.+||+ ..++.......+... .
T Consensus 232 ~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~------------------~~~~~~~l~~~~~~~~~p~w~ 293 (662)
T 3azo_A 232 DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP------------------ATGAATQLCRREEEFAGPLWT 293 (662)
T ss_dssp EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECT------------------TTCCEEESSCCSSBSSCCCCS
T ss_pred ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEEC------------------CCCceeecccccccccCcccc
Confidence 12333334457889999999999888888888 4555554 122222211111000 0
Q ss_pred CCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529 211 GWIHSVAFSKDGNKLCWTSHDGSINVRM 238 (244)
Q Consensus 211 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd 238 (244)
..+..++|+|+++++++++. +.++||.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 294 PGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp TTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred ccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 11567899999999999988 9999993
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=3.2e-18 Score=139.96 Aligned_cols=199 Identities=10% Similarity=0.001 Sum_probs=139.1
Q ss_pred CCCceEEEEEcCCCCeEEEe--cCCCeEEEeeeccCCCcceeeeeeccCCCceE---------EEEeC--CCCCe-EEEE
Q psy11529 8 GINPVTTHAWNNTRQQLAFT--PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVT---------GIDWA--PNTNR-IVTC 73 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~--~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~ 73 (244)
|...+..++|++++-+++.. +.++...||.... + .....+..+...+. ...|+ |||+. |+.+
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~--~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRA--D--GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECT--T--SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECC--C--CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 46789999999887667766 5688999999643 2 33445555665555 56565 99998 7766
Q ss_pred eC-CccEEEEeeeCC--C-CCceeeEEEec-----cCcceEEEEECCCCCeEEEeeCC----------CeEEEEEeec--
Q psy11529 74 SA-DRNAYVWTQNND--D-KKWKPTLVLLR-----INRAATCVKWSPLENKFAAGSGA----------RLISVCYFES-- 132 (244)
Q Consensus 74 ~~-d~~i~iwd~~~~--~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~-- 132 (244)
+. +..|.+++ .. . +.. ..+.. +...+..++|+|||+.|++++.+ ..|++||+..
T Consensus 98 ~~~~~~l~~~~--~~~~g~~~~---~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 98 HFGDQRLYAFE--PDAPGGAVP---RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp BTTTCCEEEEC--TTSTTCCCC---EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred ECCCCeEEEEc--CCCCCCCCC---EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 54 45566666 54 2 432 22223 45678899999999999998876 5788999877
Q ss_pred ----CCCceEEEeeec-CCCCceeEEEecCCCCEEEEeeCC--------CeEEEEEeeecccccCCCCCCCCcccccc--
Q psy11529 133 ----ENDWWVAKHIKK-PIKSTITCLDWHPNNHLLGCGSTD--------FKVRVFSAYIKDIESAPQSTNWGSKSTLG-- 197 (244)
Q Consensus 133 ----~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~-- 197 (244)
+.. . ... .+...+..++|+|||++|+.++.+ ..|++||+.. .+
T Consensus 173 ~~~~~~~----~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~-----------------~g~~ 230 (662)
T 3azo_A 173 AADRSAV----R-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTE-----------------DGRF 230 (662)
T ss_dssp TTCGGGS----E-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECT-----------------TSCE
T ss_pred cccCCce----e-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECC-----------------CCcc
Confidence 443 2 223 444678889999999999887754 3799999830 23
Q ss_pred -ceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC--cEEEEeCC
Q psy11529 198 -NCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG--SINVRMSQ 240 (244)
Q Consensus 198 -~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~ 240 (244)
+.......+ ...+..++|+|||+++++++.++ .|.+||+.
T Consensus 231 ~~~~~l~~~~---~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~ 273 (662)
T 3azo_A 231 ADTRTLLGGP---EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPA 273 (662)
T ss_dssp EEEEEEEEET---TBCEEEEEECTTSCEEEEECTTSSCEEEEECTT
T ss_pred cccEEeCCCC---CceEcceEECCCCeEEEEECCCCCeEEEEEECC
Confidence 333333344 67899999999999888888888 56666653
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.82 E-value=1.1e-17 Score=125.72 Aligned_cols=203 Identities=10% Similarity=0.043 Sum_probs=145.7
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee---------ccCCCceEEEEeCC-CCCeEEEEe-CCcc
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL---------DGHDLKVTGIDWAP-NTNRIVTCS-ADRN 78 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~d~~ 78 (244)
.....++++|+|+++++...++.|++|+.++ . ...+..+ .++-.....++++| ++..+++.+ .++.
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g--~-~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHS--K-EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTC--S-SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCC--C-eEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 3678899999999888888889999999866 2 0134444 23445689999999 788888776 6899
Q ss_pred EEEEeeeCCCCCceeeEEEec--------cCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCc
Q psy11529 79 AYVWTQNNDDKKWKPTLVLLR--------INRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKST 149 (244)
Q Consensus 79 i~iwd~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 149 (244)
|++|+ . +++....+...+ .-.....++++|+ +.++++...++.|++|+.++++. ........+...
T Consensus 168 I~~~~--~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~--~~~~~~~~~~~~ 242 (329)
T 3fvz_A 168 IVQFS--P-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF--VREIKHASFGRN 242 (329)
T ss_dssp EEEEC--T-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEEECCTTTTTC
T ss_pred EEEEc--C-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE--EEEEeccccCCC
Confidence 99999 3 455333332111 1134789999998 67777777789999999886653 111122344567
Q ss_pred eeEEEecC------CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec---CCCCCCCCeEEEEEec
Q psy11529 150 ITCLDWHP------NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN---NSSSGGGWIHSVAFSK 220 (244)
Q Consensus 150 v~~~~~~p------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~ 220 (244)
+..++++| +|+.+++...+..|++||. ..++.+..+. .+ ...+..++++|
T Consensus 243 ~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~------------------~~g~~~~~~~~~~~~---~~~p~~ia~~~ 301 (329)
T 3fvz_A 243 VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNF------------------SSGEIIDVFKPVRKH---FDMPHDIVASE 301 (329)
T ss_dssp EEEEEEETTEEEEEECCCCTTCSCCCCEEEEET------------------TTCCEEEEECCSSSC---CSSEEEEEECT
T ss_pred cceeeecCCEEEEeCCCEEeccCCCcEEEEEEc------------------CCCeEEEEEcCCCCc---cCCeeEEEECC
Confidence 88999999 3333333334558999998 5677777763 44 67789999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCC
Q psy11529 221 DGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 221 ~~~~l~~~~~dg~i~vwd~~~ 241 (244)
+|.++++...++.|++|+++.
T Consensus 302 dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 302 DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TSEEEEEESSSCCEEEEEEEE
T ss_pred CCCEEEEECCCCEEEEEeCCc
Confidence 998888888899999999864
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=8.2e-17 Score=118.43 Aligned_cols=198 Identities=10% Similarity=0.075 Sum_probs=142.2
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec------cCCCceEEEEe-CCCCCeEEEEeC-CccEEE
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD------GHDLKVTGIDW-APNTNRIVTCSA-DRNAYV 81 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~------~~~~~v~~~~~-~~~~~~l~~~~~-d~~i~i 81 (244)
....+++++++++++++...++.|.+|+.+. +....+. ++...+.++++ .++++.+++... ++.|.+
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTS-----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCC-----cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4688999999999888888889999999876 3444442 24457889999 467776666543 789999
Q ss_pred EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeee-cCCCCceeEEEecCCCC
Q psy11529 82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK-KPIKSTITCLDWHPNNH 160 (244)
Q Consensus 82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~ 160 (244)
|| . +++....+. ......+..++++|+++.+++...++.|.+||.+.. . ..... ..+...+..++++|+|+
T Consensus 105 ~d--~-~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~---~~~~~~~~~~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 105 YN--Q-YGQFVRKFG-ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-V---LHKFGCSKHLEFPNGVVVNDKQE 176 (286)
T ss_dssp EC--T-TSCEEEEEC-TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-E---EEEEECTTTCSSEEEEEECSSSE
T ss_pred EC--C-CCcEEEEec-CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-E---EEEeCCCCccCCcEEEEECCCCC
Confidence 99 4 444322221 123456889999999987777777899999985432 1 12221 13345689999999999
Q ss_pred EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC-cEEEEeC
Q psy11529 161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG-SINVRMS 239 (244)
Q Consensus 161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~ 239 (244)
++++...++.|++||. .++.+..+..+. ....+..++++++|+++++...++ .|.+||.
T Consensus 177 l~v~~~~~~~i~~~~~-------------------~g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 177 IFISDNRAHCVKVFNY-------------------EGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp EEEEEGGGTEEEEEET-------------------TCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred EEEEECCCCEEEEEcC-------------------CCCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 8888778899999995 345555554320 025688999999999888887776 9999996
Q ss_pred C
Q psy11529 240 Q 240 (244)
Q Consensus 240 ~ 240 (244)
+
T Consensus 237 ~ 237 (286)
T 1q7f_A 237 D 237 (286)
T ss_dssp T
T ss_pred C
Confidence 5
No 171
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.80 E-value=7.7e-17 Score=119.19 Aligned_cols=199 Identities=11% Similarity=0.046 Sum_probs=136.3
Q ss_pred CCCceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 8 GINPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
+.....+++|+|+|+ +++++..++.|..|+..+ . ...+..+...+.+++++|+|+++++...++.|.+|| .
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-----~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d--~ 97 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG-----Q-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR--E 97 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS-----C-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC--S
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCC-----C-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc--C
Confidence 456678999999998 777888889999999987 3 445556777899999999999887776678999999 7
Q ss_pred CCCCceeeEEEec--cCcceEEEEECCCCCeEEE----eeC-----------CCeEEEEEeecCCCceEEEeeecCCCCc
Q psy11529 87 DDKKWKPTLVLLR--INRAATCVKWSPLENKFAA----GSG-----------ARLISVCYFESENDWWVAKHIKKPIKST 149 (244)
Q Consensus 87 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~----~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 149 (244)
.+++......... ....+..++++|+|+++++ ++. .+.-.||.++.... ... .......
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~---~~~-~~~~~~~ 173 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT---LSA-PIRDRVK 173 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC---EEE-EECCCSS
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC---EEE-eecCCCC
Confidence 6776433221111 1234678999999998886 321 01224555554432 122 2233456
Q ss_pred eeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccce---eEEecCCCCCCCCeEEEEEecCCCEEE
Q psy11529 150 ITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC---LVELNNSSSGGGWIHSVAFSKDGNKLC 226 (244)
Q Consensus 150 v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~ 226 (244)
...++|+|+++.+++.+.++.|.+|++.. .++. ...+..+ ...+..++++++|++++
T Consensus 174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~-----------------~g~~~~~~~~~~~~---~~~p~~i~~d~~G~l~v 233 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGDNATHRYCLNA-----------------RGETEYQGVHFTVE---PGKTDGLRVDAGGLIWA 233 (296)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEECS-----------------SSCEEEEEEEECCS---SSCCCSEEEBTTSCEEE
T ss_pred CccEEECCCCCEEEEeCCCCeEEEEEECC-----------------CCcCcCCCeEeeCC---CCCCCeEEECCCCCEEE
Confidence 78999999999887777789999999841 1222 1222222 45566788888888666
Q ss_pred EeeCCCcEEEEeCC
Q psy11529 227 WTSHDGSINVRMSQ 240 (244)
Q Consensus 227 ~~~~dg~i~vwd~~ 240 (244)
+. ++.|.+||.+
T Consensus 234 ~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 234 SA--GDGVHVLTPD 245 (296)
T ss_dssp EE--TTEEEEECTT
T ss_pred Ec--CCeEEEECCC
Confidence 55 6778888765
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=1e-16 Score=120.30 Aligned_cols=206 Identities=14% Similarity=0.068 Sum_probs=140.5
Q ss_pred CCceEEEEEcCCCCeEEEecCC------------------------CeEEEeeeccCCCcceeeeeec-cCCCceEEEEe
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNN------------------------QEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDW 63 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d------------------------~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~ 63 (244)
-+.+.+++++|+|+++++...+ +.|.+||..+ + +....+. ++-.....+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--g--~~~~~~~~~~~~~p~gia~ 98 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN--A--EILQSSGKNLFYLPHGLSI 98 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT--C--CEEEEECTTTCSSEEEEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC--C--eEEeccCCCccCCceEEEE
Confidence 4679999999999999887766 4799999875 3 3333333 34457889999
Q ss_pred CCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEE---------eccCcceEEEEECC-CCCeEEEee-CCCeEEEEEeec
Q psy11529 64 APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVL---------LRINRAATCVKWSP-LENKFAAGS-GARLISVCYFES 132 (244)
Q Consensus 64 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~i~d~~~ 132 (244)
+|+|+++++...++.|++|| ..... .....+ ..+-.....++++| ++..+++.+ .++.|++|+. .
T Consensus 99 d~~g~l~v~d~~~~~v~~~~--~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~ 174 (329)
T 3fvz_A 99 DTDGNYWVTDVALHQVFKLD--PHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-S 174 (329)
T ss_dssp CTTSCEEEEETTTTEEEEEC--TTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-T
T ss_pred CCCCCEEEEECCCCEEEEEe--CCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-C
Confidence 99999888888889999999 54331 112222 12334688999999 777777775 6899999983 3
Q ss_pred CCCceEEEeee------cCCCCceeEEEecCC-CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC
Q psy11529 133 ENDWWVAKHIK------KPIKSTITCLDWHPN-NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN 205 (244)
Q Consensus 133 ~~~~~~~~~~~------~~~~~~v~~~~~~p~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (244)
+.......... ...-.....++++|+ ++++++...+++|++||. .+++.+..+..
T Consensus 175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~------------------~~G~~~~~~~~ 236 (329)
T 3fvz_A 175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKT------------------DTKEFVREIKH 236 (329)
T ss_dssp SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEET------------------TTCCEEEEECC
T ss_pred CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEEC------------------CCCcEEEEEec
Confidence 33211111000 011234789999998 777777778899999997 45777776643
Q ss_pred CCCCCCCeEEEEEec------CCCEEEEeeCCCcEEEEeCCC
Q psy11529 206 SSSGGGWIHSVAFSK------DGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 206 ~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~vwd~~~ 241 (244)
.. ....+..++|+| +|+.+++...+..|++||+.+
T Consensus 237 ~~-~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~ 277 (329)
T 3fvz_A 237 AS-FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS 277 (329)
T ss_dssp TT-TTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred cc-cCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence 20 056788999999 444333334455899999754
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.78 E-value=9.1e-16 Score=115.25 Aligned_cols=202 Identities=10% Similarity=0.025 Sum_probs=135.7
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC----ccEEEEee
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD----RNAYVWTQ 84 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~ 84 (244)
...+.+++|+|+|++++++..++.|.+|+..+ + +.......+...+.+++++|+++++++...+ +.|.+||
T Consensus 44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~--~--~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d- 118 (333)
T 2dg1_A 44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPET--K--EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT- 118 (333)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTT--C--CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC-
T ss_pred CccccCcEECCCCCEEEEECCCCEEEEEeCCC--C--cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe-
Confidence 45678999999999888888889999999876 4 2222222466789999999999887777655 6899999
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC----CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA----RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH 160 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 160 (244)
..++..............+..++++|+++.+++...+ ....+|.++..... ..... .....+..++|+|+++
T Consensus 119 -~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~-~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 119 -ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPII-QNISVANGIALSTDEK 194 (333)
T ss_dssp -TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEE-EEESSEEEEEECTTSS
T ss_pred -CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE--EEEee-cCCCcccceEECCCCC
Confidence 6666543222111234568999999999877765431 23445555433210 11111 1224578899999998
Q ss_pred EEE-EeeCCCeEEEEEeeecccccCCCCCCCCcccccccee--------EEecCCCCCCCCeEEEEEecCCCEEEEeeCC
Q psy11529 161 LLG-CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL--------VELNNSSSGGGWIHSVAFSKDGNKLCWTSHD 231 (244)
Q Consensus 161 ~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 231 (244)
.|+ +.+.++.|.+||+.. .+..+ ..+.. ...+..++++++|+++++...+
T Consensus 195 ~l~v~~~~~~~i~~~d~~~-----------------~g~~~~~~~~~~~~~~~~----~~~~~~i~~d~~G~l~v~~~~~ 253 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALED-----------------DGVTIQPFGATIPYYFTG----HEGPDSCCIDSDDNLYVAMYGQ 253 (333)
T ss_dssp EEEEEEGGGTEEEEEEECT-----------------TSSSEEEEEEEEEEECCS----SSEEEEEEEBTTCCEEEEEETT
T ss_pred EEEEEeCCCCeEEEEEecC-----------------CCcCcccccceEEEecCC----CCCCCceEECCCCCEEEEEcCC
Confidence 654 445678999999831 11111 11111 2357889999999988887778
Q ss_pred CcEEEEeCC
Q psy11529 232 GSINVRMSQ 240 (244)
Q Consensus 232 g~i~vwd~~ 240 (244)
+.|.+||.+
T Consensus 254 ~~v~~~d~~ 262 (333)
T 2dg1_A 254 GRVLVFNKR 262 (333)
T ss_dssp TEEEEECTT
T ss_pred CEEEEECCC
Confidence 999999875
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=6.9e-18 Score=129.34 Aligned_cols=199 Identities=11% Similarity=-0.025 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEE--eCCCCCeEEEE----------------
Q psy11529 12 VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGID--WAPNTNRIVTC---------------- 73 (244)
Q Consensus 12 v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~---------------- 73 (244)
+..++|+|||+.|++++.++.|++||+.+ + +....+..+...+.... ++|++++++..
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~--g--~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVKDGRNLMRVDLAT--L--EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SSSCEECTTSSEEEEEETTTEEEEEETTT--C--CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred ccceEEcCCCCEEEEEeCCCeEEEEECCC--C--cceeeeechhhcccccceeECCCCCeeccccccCcccccccccchh
Confidence 34678999999999999889999999987 4 33333444455454443 48999988742
Q ss_pred ------eCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCCC------eEEEEEeecCCCceEEE
Q psy11529 74 ------SADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGAR------LISVCYFESENDWWVAK 140 (244)
Q Consensus 74 ------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~ 140 (244)
..+..|.+|| +.+++.. .+..+...+..++|+| +|+.|+.+..++ .|.++|.+.... .
T Consensus 159 ~~~~~~~~~~~l~~~d--~~~g~~~---~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----~ 229 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVD--LKTGEST---VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM----R 229 (388)
T ss_dssp HHHGGGCCCEEEEEEE--TTTCCEE---EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC----E
T ss_pred hhhhccCCcceEEEEE--CCCCceE---EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce----E
Confidence 2346788899 7777633 2334566789999999 999988876532 566666555433 2
Q ss_pred eeecCCC-CceeEEEecCCCCEEEEeeC-CC----eEEEEEeeecccccCCCCCCCCccccccc--eeEEecCCCCCCCC
Q psy11529 141 HIKKPIK-STITCLDWHPNNHLLGCGST-DF----KVRVFSAYIKDIESAPQSTNWGSKSTLGN--CLVELNNSSSGGGW 212 (244)
Q Consensus 141 ~~~~~~~-~~v~~~~~~p~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 212 (244)
....... ..+..+.|+|||+.|+..+. ++ .|++||+. +++ .+..+..+......
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~------------------~g~~~~l~~~~~~~~~~~~ 291 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE------------------TLENRQLTSMPACSHLMSN 291 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT------------------TCCEEEEEEECCEEEEEEC
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecC------------------CCceEEEEcCCCceeeeec
Confidence 2222221 35778999999997765443 22 39999983 333 22222221000000
Q ss_pred eEEEEEecCCCEEEEe---------eCCCcEEEEeCCC
Q psy11529 213 IHSVAFSKDGNKLCWT---------SHDGSINVRMSQQ 241 (244)
Q Consensus 213 v~~~~~s~~~~~l~~~---------~~dg~i~vwd~~~ 241 (244)
...++|+|||+.|+.. ..+..|++||+.+
T Consensus 292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp TTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 1123799999987754 4466899999875
No 175
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=3.6e-16 Score=118.77 Aligned_cols=196 Identities=9% Similarity=-0.026 Sum_probs=125.3
Q ss_pred EEEEcCCCCeEEEec----------CCCeEEEeeeccCCCcceeeeeeccC------CCceEEEEeCCCCCeEEEEeC--
Q psy11529 14 THAWNNTRQQLAFTP----------NNQEVHLYQYEKAANDWSQLDVLDGH------DLKVTGIDWAPNTNRIVTCSA-- 75 (244)
Q Consensus 14 ~~~~~~~~~~l~~~~----------~d~~v~v~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~-- 75 (244)
.++|+|||++++++. .++.|.+||..+ . +.+..+... ......++++|+|++|+++..
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t--~--~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~ 129 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK--L--TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASP 129 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT--C--CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESS
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC--C--cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCC
Confidence 899999999998875 256799999876 3 444444322 234667999999999998864
Q ss_pred CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCC-CeEEEeeCCCeEEEEEeec----------------------
Q psy11529 76 DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE-NKFAAGSGARLISVCYFES---------------------- 132 (244)
Q Consensus 76 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~---------------------- 132 (244)
++.|.+|| ..+++....+ ... .....+.+.|++ ..+++.+.|+.+.+|+++.
T Consensus 130 ~~~v~v~d--~~~~~~~~~~--i~~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 204 (361)
T 2oiz_A 130 ATSIGIVD--VAKGDYVEDV--TAA-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIF 204 (361)
T ss_dssp SEEEEEEE--TTTTEEEEEE--GGG-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBC
T ss_pred CCeEEEEE--CCCCcEEEEE--ecC-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceE
Confidence 68999999 6766532210 111 111223344433 3344444444444444432
Q ss_pred --------------------------CCCceEEEeeecC----C----CCceeEEEecCCCCEEEEeeC-----------
Q psy11529 133 --------------------------ENDWWVAKHIKKP----I----KSTITCLDWHPNNHLLGCGST----------- 167 (244)
Q Consensus 133 --------------------------~~~~~~~~~~~~~----~----~~~v~~~~~~p~~~~l~~~~~----------- 167 (244)
............. . ......++|+|+++.++++..
T Consensus 205 ~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~ 284 (361)
T 2oiz_A 205 IAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFP 284 (361)
T ss_dssp SCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCC
T ss_pred EEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCC
Confidence 2210000000000 0 011112788999887776543
Q ss_pred CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
.+.|.+||+ .+.+.+..+..+ . +.+++|+|||++|++++. +.|.+||+++.
T Consensus 285 ~~~v~viD~------------------~t~~~v~~i~~~---~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 285 AAEIWVMDT------------------KTKQRVARIPGR---D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp CSEEEEEET------------------TTTEEEEEEECT---T--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CceEEEEEC------------------CCCcEEEEEecC---C--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 348999998 778889988885 5 999999999999998886 99999999875
No 176
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.77 E-value=1e-15 Score=113.14 Aligned_cols=199 Identities=12% Similarity=0.123 Sum_probs=136.2
Q ss_pred CCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee-cc-CCCceEEEEeCCCCCeEEEE----eC------
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-DG-HDLKVTGIDWAPNTNRIVTC----SA------ 75 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~----~~------ 75 (244)
+...+.+++++|+|+++++...++.|.+|+..+ +........ .+ ....+..++++|+|+++++. +.
T Consensus 67 ~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~ 144 (296)
T 3e5z_A 67 PSHHQNGHCLNKQGHLIACSHGLRRLERQREPG--GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY 144 (296)
T ss_dssp SCSSEEEEEECTTCCEEEEETTTTEEEEECSTT--CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSS
T ss_pred CCCCcceeeECCCCcEEEEecCCCeEEEEcCCC--CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccc
Confidence 456789999999999888777778999999865 322222111 11 12346789999999988873 21
Q ss_pred -------CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCc-eEEEeeecCCC
Q psy11529 76 -------DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDW-WVAKHIKKPIK 147 (244)
Q Consensus 76 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~ 147 (244)
.+.|..++ .. ++. .....+......++|+|+++.+++.+.++.|.+|+++..... ...... ....
T Consensus 145 ~~~~~~~~~~l~~~~--~~-g~~---~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~ 217 (296)
T 3e5z_A 145 GGEMELPGRWVFRLA--PD-GTL---SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEP 217 (296)
T ss_dssp CCCCCSSSCEEEEEC--TT-SCE---EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSS
T ss_pred cccccCCCcEEEEEC--CC-CCE---EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCC
Confidence 23455555 43 442 223345567789999999999877777899999999733321 111222 3345
Q ss_pred CceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEE-ecCCCEEE
Q psy11529 148 STITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAF-SKDGNKLC 226 (244)
Q Consensus 148 ~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~ 226 (244)
..+..++++++|+++++. ++.|.+||. .++.+..+..+ .. +.+++| +|+++.|+
T Consensus 218 ~~p~~i~~d~~G~l~v~~--~~~v~~~~~-------------------~g~~~~~~~~~---~~-~~~~~f~~~d~~~L~ 272 (296)
T 3e5z_A 218 GKTDGLRVDAGGLIWASA--GDGVHVLTP-------------------DGDELGRVLTP---QT-TSNLCFGGPEGRTLY 272 (296)
T ss_dssp SCCCSEEEBTTSCEEEEE--TTEEEEECT-------------------TSCEEEEEECS---SC-CCEEEEESTTSCEEE
T ss_pred CCCCeEEECCCCCEEEEc--CCeEEEECC-------------------CCCEEEEEECC---CC-ceeEEEECCCCCEEE
Confidence 567889999999876665 788999996 36777777776 55 899999 58999888
Q ss_pred EeeCCCcEEEEeCCC
Q psy11529 227 WTSHDGSINVRMSQQ 241 (244)
Q Consensus 227 ~~~~dg~i~vwd~~~ 241 (244)
.++.++ +.-++.++
T Consensus 273 v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 273 MTVSTE-FWSIETNV 286 (296)
T ss_dssp EEETTE-EEEEECSC
T ss_pred EEcCCe-EEEEEccc
Confidence 887764 44445543
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.76 E-value=2e-16 Score=130.38 Aligned_cols=199 Identities=7% Similarity=-0.012 Sum_probs=132.3
Q ss_pred ceEEEEEcCCCCeEEEecCCC-----eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCcc-------
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQ-----EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRN------- 78 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~-----~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~------- 78 (244)
.+..++|||||++||++..++ .|++||+.+ + +...... ....+..++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t--g--~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG--A--KELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT--T--EEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC--C--CCCcccc-cCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence 578899999999999875433 899999987 4 3322211 1223678999999999998887765
Q ss_pred ---------EEEEeeeCCCCCceeeEEEec--cCcceEEEEECCCCCeEEEeeC-----CCeEEEEEeec------CCCc
Q psy11529 79 ---------AYVWTQNNDDKKWKPTLVLLR--INRAATCVKWSPLENKFAAGSG-----ARLISVCYFES------ENDW 136 (244)
Q Consensus 79 ---------i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~------~~~~ 136 (244)
|++|+ +.++.......... +...+..+.|+|||++|+.++. +..+.+||+.+ +..
T Consensus 201 ~~~~~~~~~v~~~~--l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~- 277 (710)
T 2xdw_A 201 ETSTNLHQKLYYHV--LGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL- 277 (710)
T ss_dssp CCCCCCCCEEEEEE--TTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-
T ss_pred ccccCCCCEEEEEE--CCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-
Confidence 99999 66665332232222 3455789999999999888764 56899999886 421
Q ss_pred eEEEeeecCCCCceeEEEecCCCCEEEEeeCC----CeEEEEEeeecccccCCCCCCCCccccccc--eeEEecCCCCCC
Q psy11529 137 WVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD----FKVRVFSAYIKDIESAPQSTNWGSKSTLGN--CLVELNNSSSGG 210 (244)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 210 (244)
..... ..+...+.. .|+|+|+.|+..+.. +.|.+||+. .+. ....+..+.. .
T Consensus 278 -~~~~l-~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~------------------~~~~~~~~~l~~~~~-~ 335 (710)
T 2xdw_A 278 -KWVKL-IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT------------------DPEESKWKVLVPEHE-K 335 (710)
T ss_dssp -CCEEE-ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT------------------SCCGGGCEEEECCCS-S
T ss_pred -ceEEe-eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC------------------CCCcccceeccCCCC-C
Confidence 01122 223333333 588999877766653 368899973 221 1233333310 2
Q ss_pred CCeEEEEEecCCCEEEEeeCCCc--EEEEeC
Q psy11529 211 GWIHSVAFSKDGNKLCWTSHDGS--INVRMS 239 (244)
Q Consensus 211 ~~v~~~~~s~~~~~l~~~~~dg~--i~vwd~ 239 (244)
..+..++|++++.++++...|+. |.+|++
T Consensus 336 ~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 336 DVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred CeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 36888999988888888888885 566676
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.76 E-value=1.5e-16 Score=120.09 Aligned_cols=184 Identities=9% Similarity=0.150 Sum_probs=120.1
Q ss_pred CceEEEEEcCCCCeEEEecCC---C--eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC---------
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNN---Q--EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA--------- 75 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d---~--~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------- 75 (244)
..+..++|+|||++|++++.+ + .|++|++.+ + +...... +.. +..++|+|+|+.|+.++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~--g--~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~ 132 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET--L--SSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFI 132 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT--T--EEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC-----
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC--C--ceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcE
Confidence 357789999999999887643 3 477777766 4 3332222 334 999999999999888763
Q ss_pred ------------------CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC-------eEEEEEe
Q psy11529 76 ------------------DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR-------LISVCYF 130 (244)
Q Consensus 76 ------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------~i~i~d~ 130 (244)
...|.+|| +.+++....+. . . .+..++|+|+| .++++..+. ...+|.+
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~d--~~~~~~~~~l~--~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~ 205 (347)
T 2gop_A 133 FEDDVPAWFDDLGFFDGEKTTFWIFD--TESEEVIEEFE--K-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIW 205 (347)
T ss_dssp ----CCCC---------CEEEEEEEE--TTTTEEEEEEE--E-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEE
T ss_pred EEcccceeecCcccccCccceEEEEE--CCCCeEEeeec--C-C-CcccccCCCCe-EEEEEecccccccccccccEEEe
Confidence 25688888 77776422232 2 3 78899999999 777765542 4567766
Q ss_pred ecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC--------eEEEEEeeecccccCCCCCCCCccccccceeEE
Q psy11529 131 ESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF--------KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVE 202 (244)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (244)
+ ... ...... + ..+..+ +|+|++|+.++.++ .|.+|| . ++....
T Consensus 206 d-~~~---~~~l~~-~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~-------------------~~~~~l 257 (347)
T 2gop_A 206 E-DGK---EEKMFE-K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-G-------------------KEVMGI 257 (347)
T ss_dssp E-TTE---EEEEEE-E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-S-------------------SCEEES
T ss_pred C-CCc---eEEecc-C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-C-------------------CceEec
Confidence 6 322 122211 2 344444 99999888777543 566665 1 222222
Q ss_pred ecCCCCCCCCeEE-EEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529 203 LNNSSSGGGWIHS-VAFSKDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 203 ~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~vwd~~ 240 (244)
...+ ...+.. +.|+ |+ ++++++.++.++|| +.
T Consensus 258 ~~~~---~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 258 LDEV---DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp STTC---CSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred cccC---CcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 3333 556775 8898 88 88888888888888 65
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=4.3e-17 Score=125.11 Aligned_cols=190 Identities=10% Similarity=-0.002 Sum_probs=125.9
Q ss_pred EEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEE-------------------EEeCCCCCeEEEE--
Q psy11529 15 HAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTG-------------------IDWAPNTNRIVTC-- 73 (244)
Q Consensus 15 ~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-- 73 (244)
+.|+|||++|++++.++.|++|++.+ + +.......+...... +.|+|+++.++.+
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~--~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 161 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLET--L--EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF 161 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTT--C--CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCC--C--CcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence 78999999999998888999999977 4 222222323322222 3567888877654
Q ss_pred ---eCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCC------CeEEEEEeecCCCceEEEeee
Q psy11529 74 ---SADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGA------RLISVCYFESENDWWVAKHIK 143 (244)
Q Consensus 74 ---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~ 143 (244)
..+..|.+|| +.+++.... ..+...+..+.|+| +++.|+..+.+ ..|.+||++.... ....
T Consensus 162 ~~~~~~~~l~~~d--~~~g~~~~~---~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~ 232 (396)
T 3c5m_A 162 YHTNPTCRLIKVD--IETGELEVI---HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV----RKIK 232 (396)
T ss_dssp HHTCCCEEEEEEE--TTTCCEEEE---EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC----EESS
T ss_pred ccCCCcceEEEEE--CCCCcEEee---ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce----eEee
Confidence 3567899999 777764322 34567789999999 78877776543 3577777655432 2222
Q ss_pred cCC-CCceeEEEecCCCCEEEEeeCC-----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEE
Q psy11529 144 KPI-KSTITCLDWHPNNHLLGCGSTD-----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVA 217 (244)
Q Consensus 144 ~~~-~~~v~~~~~~p~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (244)
... ...+..++|+|+|++|+..+.+ +.|++||+ ..++....... .. .. +.
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~------------------~~g~~~~l~~~----~~-~~-~~ 288 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP------------------ETLENEEVMVM----PP-CS-HL 288 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT------------------TTCCEEEEEEC----CS-EE-EE
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC------------------CCCCeEEeeeC----CC-CC-CC
Confidence 221 2357889999999987776544 45999998 33433222221 21 23 89
Q ss_pred Eec-CCCEEEEee----------------CCCcEEEEeCCC
Q psy11529 218 FSK-DGNKLCWTS----------------HDGSINVRMSQQ 241 (244)
Q Consensus 218 ~s~-~~~~l~~~~----------------~dg~i~vwd~~~ 241 (244)
|+| ||+++++++ .++.|++||+.+
T Consensus 289 ~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 289 MSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred ccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 999 999888754 246899999864
No 180
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.75 E-value=5.4e-16 Score=113.00 Aligned_cols=197 Identities=11% Similarity=-0.056 Sum_probs=139.8
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD 88 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 88 (244)
..+.+++++++|+++++.. ++.|.+|+..+ . ....+. .....+.+++++++|+.+++...++.|.+|+ ..+
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~--~---~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~--~~~ 138 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS--N---NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLA--AGS 138 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTC--S---CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEEC--TTC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCC--c---eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEE--CCC
Confidence 4677899999999766665 88999999876 3 222222 2235688999999998777777788999998 544
Q ss_pred CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529 89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD 168 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 168 (244)
... ..........+..++++|+++.+++...++.|.+|+.+.... ..........+..++++++|.++++...+
T Consensus 139 ~~~--~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~d~~g~l~v~~~~~ 212 (270)
T 1rwi_B 139 KTQ--TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ----VVLPFTDITAPWGIAVDEAGTVYVTEHNT 212 (270)
T ss_dssp CSC--EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE----EECCCSSCCSEEEEEECTTCCEEEEETTT
T ss_pred cee--EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce----EeecccCCCCceEEEECCCCCEEEEECCC
Confidence 432 111122234678999999998777766778999998776542 11222222578899999999877777778
Q ss_pred CeEEEEEeeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
+.|.+||.. . ....... .+ ...+.+++++++|+++++...++.|+++++...
T Consensus 213 ~~v~~~~~~------------------~-~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 213 NQVVKLLAG------------------S-TTSTVLPFTG---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp SCEEEECTT------------------C-SCCEECCCCS---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CcEEEEcCC------------------C-CcceeeccCC---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 899999962 1 2222222 22 356899999999998888888999999998753
No 181
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.75 E-value=9.4e-16 Score=112.09 Aligned_cols=188 Identities=12% Similarity=0.025 Sum_probs=140.1
Q ss_pred CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCC-CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEe
Q psy11529 20 TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHD-LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLL 98 (244)
Q Consensus 20 ~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 98 (244)
.++.|++++.++.|++||.++ + +.+..+..+. ..+.++.++|+|++++ +.++.|..|| . +++.+..+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t--G--~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d--~-~G~~~W~~~~- 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT--K--EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMIT--R-DGRELWNIAA- 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT--T--EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEEC--T-TSCEEEEEEC-
T ss_pred CCcEEEeeCCCCEEEEEECCC--C--eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEEC--C-CCCEEEEEcC-
Confidence 467899999999999999965 4 7777777665 4788999999999888 3477899999 6 6775554442
Q ss_pred ccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeec--CCCCceeEEEecCCCCEEEEeeCCCeEEEEE
Q psy11529 99 RINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKK--PIKSTITCLDWHPNNHLLGCGSTDFKVRVFS 175 (244)
Q Consensus 99 ~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d 175 (244)
.....+.++.+.|+|+.+++.+. ++.+..+|. .++..+....... .+......+++.++|+++++...++.|..||
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d 152 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA 152 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEEC
Confidence 22356889999999999999877 666766654 3333222211111 1113455677899999999999999999999
Q ss_pred eeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 176 AYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
. . ++.+.++..+ ....++.+.++|+++++++.++.|..+|.++
T Consensus 153 ~------------------~-G~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t 195 (276)
T 3no2_A 153 P------------------N-GQLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLES 195 (276)
T ss_dssp T------------------T-SCEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred C------------------C-CCEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence 7 4 8888888763 3456778889999999988888899998774
No 182
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=5.8e-18 Score=129.98 Aligned_cols=197 Identities=10% Similarity=0.061 Sum_probs=128.7
Q ss_pred eEEEEEcCCCCeEEEecCC---CeEEEeeeccCCCcceeeeeeccCCCc-eEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529 12 VTTHAWNNTRQQLAFTPNN---QEVHLYQYEKAANDWSQLDVLDGHDLK-VTGIDWAPNTNRIVTCSADRNAYVWTQNND 87 (244)
Q Consensus 12 v~~~~~~~~~~~l~~~~~d---~~v~v~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 87 (244)
+.+++|+|||++|++.... ..|++|++.+ + +. ..+..+... ...+.|+|+|++|+.++.++.|++|| ..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~--~--~~-~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d--~~ 110 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET--Q--QA-VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVD--LE 110 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTT--T--EE-EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEE--TT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCC--C--cE-EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEE--CC
Confidence 6678999999998877542 4788888876 4 32 333333333 33478999999999999888999999 77
Q ss_pred CCCceeeEEEeccCcceEE-------------------EEECCCCCeEEEe-----eCCCeEEEEEeecCCCceEEEeee
Q psy11529 88 DKKWKPTLVLLRINRAATC-------------------VKWSPLENKFAAG-----SGARLISVCYFESENDWWVAKHIK 143 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~ 143 (244)
+++...... .+...... +.|+|+++.++.. ..+..|.+||+.+++. ...
T Consensus 111 ~~~~~~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~----~~~- 183 (396)
T 3c5m_A 111 TLEEQVIYT--VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL----EVI- 183 (396)
T ss_dssp TCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE----EEE-
T ss_pred CCCcEEEEe--cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE----Eee-
Confidence 776433322 12222222 3568888877665 3567888998877653 111
Q ss_pred cCCCCceeEEEecC-CCCEEEEeeCC------CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEE
Q psy11529 144 KPIKSTITCLDWHP-NNHLLGCGSTD------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSV 216 (244)
Q Consensus 144 ~~~~~~v~~~~~~p-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (244)
..+...+..+.|+| +++.|+..+.+ ..|.+||+. .++ ...+..+. ....+..+
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~------------------~~~-~~~l~~~~-~~~~~~~~ 243 (396)
T 3c5m_A 184 HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED------------------GSN-VRKIKEHA-EGESCTHE 243 (396)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT------------------SCC-CEESSCCC-TTEEEEEE
T ss_pred ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC------------------CCc-eeEeeccC-CCccccce
Confidence 13456788999999 78877766543 357777762 222 22222220 02357889
Q ss_pred EEecCCCEEEEeeCC-----CcEEEEeCCCC
Q psy11529 217 AFSKDGNKLCWTSHD-----GSINVRMSQQV 242 (244)
Q Consensus 217 ~~s~~~~~l~~~~~d-----g~i~vwd~~~~ 242 (244)
+|+|||++|+..+.+ +.|++||+.+.
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 999999987776544 44999998653
No 183
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.73 E-value=7.5e-16 Score=116.67 Aligned_cols=176 Identities=9% Similarity=0.020 Sum_probs=130.0
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCC-------CcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA-------NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV 81 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 81 (244)
..+++.+++++...++++|+.+ .+.+|++.... ++.+..... .+.. |..++| ++++|+++ .++.|++
T Consensus 37 ~~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 37 FASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYS 110 (388)
T ss_dssp SSCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred cccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence 3468999999999999999886 56779875411 112222233 3566 999999 89999998 8899999
Q ss_pred EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529 82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL 161 (244)
Q Consensus 82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 161 (244)
|| +.+... ......+...+.++.+.+. .+++++.||.+.+||+..... .. +...|++++|+|+|
T Consensus 111 ~d--v~sl~~--~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~----~~----~~~~Vs~v~WSpkG-- 174 (388)
T 1xip_A 111 LD--LEELSE--FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST----KQ----LAQNVTSFDVTNSQ-- 174 (388)
T ss_dssp EE--SSSTTC--EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE----EE----EEESEEEEEECSSE--
T ss_pred EE--chhhhc--cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc----cc----ccCCceEEEEcCCc--
Confidence 99 555442 2233456677888887654 388899999999999997764 11 34589999999999
Q ss_pred EEEeeCCCeEEEEEeeecccccCCCCCCCCccccccce--eEEe------c---CCCCCCCCeEEEEEecCCCEEEE
Q psy11529 162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC--LVEL------N---NSSSGGGWIHSVAFSKDGNKLCW 227 (244)
Q Consensus 162 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~---~~~~~~~~v~~~~~s~~~~~l~~ 227 (244)
++.|..||++++|+.. ..+. ..++ . +| ...|.++.|.+++.++++
T Consensus 175 ~~vg~~dg~i~~~~~~------------------~~~~~~k~~I~~Pp~~~~~~~~---~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 175 LAVLLKDRSFQSFAWR------------------NGEMEKQFEFSLPSELEELPVE---EYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEETTSCEEEEEEE------------------TTEEEEEEEECCCHHHHTSCTT---TSEEEEEEESSSSEEEEE
T ss_pred eEEEEcCCcEEEEcCC------------------CccccccceecCCcccccccCC---CeeEEEEEEecCCeEEEE
Confidence 6788999999999873 2232 3334 2 24 788999999999998876
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=6.4e-14 Score=105.17 Aligned_cols=195 Identities=11% Similarity=-0.012 Sum_probs=128.9
Q ss_pred CCCceEEEEEcCCCCeEEEecCC----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC------Cc
Q psy11529 8 GINPVTTHAWNNTRQQLAFTPNN----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA------DR 77 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~~d----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~ 77 (244)
+...+.+++++|+|+++++...+ +.|.+|+.++ +.......-..+...+.+++++|+|+.+++... .+
T Consensus 85 ~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 85 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG--DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS--CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC--CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 35679999999999988877655 6899999877 422211111124567899999999987776653 24
Q ss_pred cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecC-CCceEEE-eee--cCCCCceeE
Q psy11529 78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAG-SGARLISVCYFESE-NDWWVAK-HIK--KPIKSTITC 152 (244)
Q Consensus 78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~-~~~~~~~-~~~--~~~~~~v~~ 152 (244)
.|..+| ..+++.... ......+..++|+|+++.|+++ ..++.|.+|+++.. ....... ... ......+..
T Consensus 163 ~l~~~~--~~~~~~~~~---~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 237 (333)
T 2dg1_A 163 GVYYVS--PDFRTVTPI---IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDS 237 (333)
T ss_dssp EEEEEC--TTSCCEEEE---EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEE
T ss_pred eEEEEe--CCCCEEEEe---ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCc
Confidence 555555 555443222 2233457899999999866554 45789999999753 2211110 111 111146788
Q ss_pred EEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCC------CeEEEEEecCCCEEE
Q psy11529 153 LDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGG------WIHSVAFSKDGNKLC 226 (244)
Q Consensus 153 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~ 226 (244)
++++++|+++++...++.|.+||. .++.+..+..+ .. .+.+++|+||++.|+
T Consensus 238 i~~d~~G~l~v~~~~~~~v~~~d~-------------------~g~~~~~~~~~---~~~~g~~~~~~~~~~~~dg~~L~ 295 (333)
T 2dg1_A 238 CCIDSDDNLYVAMYGQGRVLVFNK-------------------RGYPIGQILIP---GRDEGHMLRSTHPQFIPGTNQLI 295 (333)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECT-------------------TSCEEEEEECT---TGGGTCSCBCCEEEECTTSCEEE
T ss_pred eEECCCCCEEEEEcCCCEEEEECC-------------------CCCEEEEEEcC---CCccccccCcceEEECCCCCEEE
Confidence 999999998888777899999986 24455555443 22 688999999987776
Q ss_pred EeeCC
Q psy11529 227 WTSHD 231 (244)
Q Consensus 227 ~~~~d 231 (244)
.++.+
T Consensus 296 v~~~~ 300 (333)
T 2dg1_A 296 ICSND 300 (333)
T ss_dssp EEEEC
T ss_pred EEeCc
Confidence 55554
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.73 E-value=5.3e-16 Score=127.60 Aligned_cols=199 Identities=14% Similarity=0.069 Sum_probs=125.3
Q ss_pred ceEEEEEcCCCCeEEE-----ecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCcc-------
Q psy11529 11 PVTTHAWNNTRQQLAF-----TPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRN------- 78 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~-----~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~------- 78 (244)
.+.+++|||||++||. |+.+..|++||+.+ ++......+... ....++|+|||+.|+.++.|..
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t--g~~~~~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS--GEWSKVDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT--CCBCSSCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC--CCCcCCcccCcc--cccceEEecCCCEEEEEEecCCCCCcccc
Confidence 6889999999999994 44457899999987 422101122211 1267999999999999887765
Q ss_pred ------EEEEeeeCCCCCceeeEEE--eccCcceEEEEECCCCCeEEEeeCCC--eEEEEEeecCCCceEEEeeecCCCC
Q psy11529 79 ------AYVWTQNNDDKKWKPTLVL--LRINRAATCVKWSPLENKFAAGSGAR--LISVCYFESENDWWVAKHIKKPIKS 148 (244)
Q Consensus 79 ------i~iwd~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~ 148 (244)
|++|+ +.++........ ..+...+..+.|+|+|++|++++.++ ...+|-++..... .... ..+..
T Consensus 198 ~~~~~~v~~~~--l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--~~~l-~~~~~ 272 (695)
T 2bkl_A 198 RPGYTTIRYHT--LGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD--FRLL-VKGVG 272 (695)
T ss_dssp GGGGCEEEEEE--TTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS--CEEE-EECSS
T ss_pred CCCCCEEEEEE--CCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc--eEEe-ecCCC
Confidence 99999 666653222222 23445788999999999988877655 4444444332210 1222 22233
Q ss_pred ceeEEEecCCCCEEEEeeC----CCeEEEEEeeecccccCCCCCCCCccccccce--eEEecCCCCCCCCeEEEEEecCC
Q psy11529 149 TITCLDWHPNNHLLGCGST----DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC--LVELNNSSSGGGWIHSVAFSKDG 222 (244)
Q Consensus 149 ~v~~~~~~p~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~ 222 (244)
.+....+ ++|+ ++..+. ++.|.+||+. .++. ...+..++. ...+..++|+ ++
T Consensus 273 ~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~------------------~~~~~~~~~l~~~~~-~~~l~~~~~~-~~ 330 (695)
T 2bkl_A 273 AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPA------------------KPARASWKEIVPEDS-SASLLSVSIV-GG 330 (695)
T ss_dssp CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTT------------------BCSGGGCEEEECCCS-SCEEEEEEEE-TT
T ss_pred ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCC------------------CCCccCCeEEecCCC-CCeEEEEEEE-CC
Confidence 4455556 5666 444443 5789999973 2221 122222210 3457888888 77
Q ss_pred CEEEEeeCCCcEEEEeCC
Q psy11529 223 NKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 223 ~~l~~~~~dg~i~vwd~~ 240 (244)
.++++...|+..+||.++
T Consensus 331 ~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 331 HLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEe
Confidence 788888899988887543
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.72 E-value=7e-15 Score=107.07 Aligned_cols=197 Identities=9% Similarity=-0.051 Sum_probs=133.9
Q ss_pred ceEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeee-ccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529 11 PVTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVL-DGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD 88 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 88 (244)
...+++++++|++++ +...++.|.+|+..+ . ....+ ..+...+.+++++++++.+++.. ++.|.+|| ...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~--~---~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d--~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGS--T---GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLA--AGS 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC----------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEEC--TTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCC--c---ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEe--CCC
Confidence 678999999999777 546788999999765 2 22222 22335678899999998666655 88999999 555
Q ss_pred CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529 89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD 168 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 168 (244)
.... .. .......+..++++|+++.+++...++.|.+|+...... ..........+..++++|+|+++++...+
T Consensus 97 ~~~~-~~-~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 170 (270)
T 1rwi_B 97 NNQT-VL-PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGLNDPDGVAVDNSGNVYVTDTDN 170 (270)
T ss_dssp SCCE-EC-CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC----EECCCCSCCSCCCEEECTTCCEEEEEGGG
T ss_pred ceEe-ee-ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee----EeeccccCCCceeEEEeCCCCEEEEECCC
Confidence 4321 11 112235688999999998777767788899886444332 11112223467889999999977777778
Q ss_pred CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
+.|.+||.. ..........+ ...+..++++++|.++++...++.|.+|+....
T Consensus 171 ~~i~~~~~~------------------~~~~~~~~~~~---~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 171 NRVVKLEAE------------------SNNQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp TEEEEECTT------------------TCCEEECCCSS---CCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred CEEEEEecC------------------CCceEeecccC---CCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 899999972 22222222222 356889999999987777777889999998653
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=5.2e-15 Score=122.00 Aligned_cols=202 Identities=10% Similarity=0.049 Sum_probs=136.1
Q ss_pred eEEEEEcCCCCeEEEecCCCe----------------EEEeeeccCCCcce--eeeeeccCCCceEEEEeCCCCCeEEEE
Q psy11529 12 VTTHAWNNTRQQLAFTPNNQE----------------VHLYQYEKAANDWS--QLDVLDGHDLKVTGIDWAPNTNRIVTC 73 (244)
Q Consensus 12 v~~~~~~~~~~~l~~~~~d~~----------------v~v~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~ 73 (244)
+..++|+|||+.|++++.++. |++|++.+ +... .+.....|...+..+.|+|||++|+.+
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t--~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~ 250 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGT--DQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTS--CGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCC--CcccceEEeccCCCCeEEEEEEEcCCCCEEEEE
Confidence 567999999999999877655 99999976 3212 222233355668899999999998877
Q ss_pred eC-----CccEEEEeeeCCC------CCceeeEEEeccCcceEEEEECCCCCeEEEeeCC----CeEEEEEeecCCCceE
Q psy11529 74 SA-----DRNAYVWTQNNDD------KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA----RLISVCYFESENDWWV 138 (244)
Q Consensus 74 ~~-----d~~i~iwd~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~ 138 (244)
+. +..|.+|| +.+ +... ...+..+...+.. .|+|+|+.|+..+.. ..|.+||+.+.... .
T Consensus 251 ~~~~~~~~~~l~~~d--~~~~~~~~~~~~~-~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~ 325 (710)
T 2xdw_A 251 IREGCDPVNRLWYCD--LQQESNGITGILK-WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-K 325 (710)
T ss_dssp EECSSSSCCEEEEEE--GGGSSSSSCSSCC-CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-G
T ss_pred EEccCCCccEEEEEE--CcccccccCCccc-eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-c
Confidence 64 56899999 554 3211 2223344444444 588898888776653 35888888765310 0
Q ss_pred EEeeecCCC-CceeEEEecCCCCEEEEeeCCCeEE--EEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEE
Q psy11529 139 AKHIKKPIK-STITCLDWHPNNHLLGCGSTDFKVR--VFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHS 215 (244)
Q Consensus 139 ~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~dg~i~--i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (244)
......... ..+..++|++++.++++...++..+ +||+ ..++.+..+..+ ...+..
T Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~------------------~~g~~~~~l~~~---~~~v~~ 384 (710)
T 2xdw_A 326 WKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL------------------ATGALLKIFPLE---VGSVVG 384 (710)
T ss_dssp CEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET------------------TTCCEEEEECCC---SSEEEE
T ss_pred ceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC------------------CCCCEEEecCCC---CceEEE
Confidence 112222222 3688899998888888888888554 4554 346666677766 778899
Q ss_pred EEEecCCCEEEEe-e---CCCcEEEEeCCC
Q psy11529 216 VAFSKDGNKLCWT-S---HDGSINVRMSQQ 241 (244)
Q Consensus 216 ~~~s~~~~~l~~~-~---~dg~i~vwd~~~ 241 (244)
+.++|++..++.. + ..++|++||+.+
T Consensus 385 ~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 385 YSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 9999998765533 2 357899999865
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=1.3e-14 Score=109.44 Aligned_cols=180 Identities=8% Similarity=0.107 Sum_probs=121.5
Q ss_pred eEEEEEcCCCCeEEEecC---------------------------CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeC
Q psy11529 12 VTTHAWNNTRQQLAFTPN---------------------------NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWA 64 (244)
Q Consensus 12 v~~~~~~~~~~~l~~~~~---------------------------d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 64 (244)
+..++|+|||+.|++++. ...|++|++.+ + +.+..+.. . .+..++|+
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~--~--~~~~~l~~-~-~~~~~~~s 179 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES--E--EVIEEFEK-P-RFSSGIWH 179 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT--T--EEEEEEEE-E-TTCEEEEE
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC--C--eEEeeecC-C-CcccccCC
Confidence 889999999999888763 25788899876 4 33234443 3 78899999
Q ss_pred CCCCeEEEEeCCc-------cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC--------eEEEEE
Q psy11529 65 PNTNRIVTCSADR-------NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR--------LISVCY 129 (244)
Q Consensus 65 ~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------~i~i~d 129 (244)
|+| +++++..+. ...||.++ +++... +..+ ..+..+ +|+|+.|+.++.+. .|.+||
T Consensus 180 pdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~---l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 180 RDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEK---MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp TTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEE---EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred CCe-EEEEEecccccccccccccEEEeC--CCceEE---eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC
Confidence 999 777775542 56788743 444222 2223 444444 99999988877543 566666
Q ss_pred eecCCCceEEEeeecCCCCceeE-EEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC
Q psy11529 130 FESENDWWVAKHIKKPIKSTITC-LDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS 208 (244)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (244)
+++ .......+...+.. +.|+ ++ ++++++.++.++|| +. .++... +..+
T Consensus 251 --~~~----~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~------------------~g~~~~-~~~~-- 300 (347)
T 2gop_A 251 --GKE----VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW------------------DGEIKP-IAKG-- 300 (347)
T ss_dssp --SSC----EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE------------------SSSEEE-EECS--
T ss_pred --CCc----eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec------------------CCceEE-EecC--
Confidence 332 23344445567876 9999 88 88999999999999 83 233322 3333
Q ss_pred CCCCeEEEEEecCCCEEEEeeCCCcE-EEEeC
Q psy11529 209 GGGWIHSVAFSKDGNKLCWTSHDGSI-NVRMS 239 (244)
Q Consensus 209 ~~~~v~~~~~s~~~~~l~~~~~dg~i-~vwd~ 239 (244)
...+.+++|+| .++++++.++.. .+|.+
T Consensus 301 -~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 301 -RHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp -SSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred -CCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 67799999999 677777776654 66654
No 189
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.67 E-value=2e-14 Score=119.12 Aligned_cols=196 Identities=12% Similarity=0.040 Sum_probs=126.0
Q ss_pred ceEEEEEcCCCCeEEEecCC-----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCcc-------
Q psy11529 11 PVTTHAWNNTRQQLAFTPNN-----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRN------- 78 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d-----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~------- 78 (244)
.+..++|||||++||+++.+ ..|++||+.+ ++ .+. ...+...+..++|+|| +.|+.++.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t--g~--~~~-~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD--GK--PLA-DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT--CC--EEE-EEEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC--CC--CCC-ccCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 67889999999999887543 4699999987 42 221 1112222357899999 98888876543
Q ss_pred -------EEEEeeeCCCCCceeeEEEec--cCcceEEEEECCCCCeEEEeeCCC-----eEEEEEeecCCCceEEEeeec
Q psy11529 79 -------AYVWTQNNDDKKWKPTLVLLR--INRAATCVKWSPLENKFAAGSGAR-----LISVCYFESENDWWVAKHIKK 144 (244)
Q Consensus 79 -------i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~ 144 (244)
|++|+ +.++.......... +...+..+.|+|||++|+..+.++ .|.+||+.++... .......
T Consensus 238 ~~~~~~~v~~~~--lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~l~~ 314 (741)
T 1yr2_A 238 ALNYNQTVWLHR--LGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG-PVTALIP 314 (741)
T ss_dssp -CCCCCEEEEEE--TTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC-CCEEEEC
T ss_pred cCCCCCEEEEEE--CCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc-ccEEecC
Confidence 88888 66654322222222 223578999999999988877543 8999999876210 0122222
Q ss_pred CCCCceeEEEecCCCCEEEEeeCC----CeEEEEEeeecccccCCCCCCCCcccccc--ceeEEecCCCCCCCCeEEEEE
Q psy11529 145 PIKSTITCLDWHPNNHLLGCGSTD----FKVRVFSAYIKDIESAPQSTNWGSKSTLG--NCLVELNNSSSGGGWIHSVAF 218 (244)
Q Consensus 145 ~~~~~v~~~~~~p~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~ 218 (244)
+....... ++|+|+.|+..+.+ +.|.+||+ ..+ +....+..+ ...+..++|
T Consensus 315 -~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~------------------~~~~~~~~~l~~~~---~~~l~~~~~ 371 (741)
T 1yr2_A 315 -DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDL------------------SGSTPRFDTVVPES---KDNLESVGI 371 (741)
T ss_dssp -SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEEC------------------SSSSCEEEEEECCC---SSEEEEEEE
T ss_pred -CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeC------------------CCCccccEEEecCC---CCeEEEEEE
Confidence 22333333 34889888877653 45999997 232 222333333 455777888
Q ss_pred ecCCCEEEEeeCCCcEEEEeC
Q psy11529 219 SKDGNKLCWTSHDGSINVRMS 239 (244)
Q Consensus 219 s~~~~~l~~~~~dg~i~vwd~ 239 (244)
+ ++.++++...|+..+||.+
T Consensus 372 ~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 372 A-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp E-BTEEEEEEEETTEEEEEEE
T ss_pred E-CCEEEEEEEECCEEEEEEE
Confidence 7 6667888888988777754
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.67 E-value=8.2e-15 Score=120.56 Aligned_cols=201 Identities=10% Similarity=0.012 Sum_probs=132.6
Q ss_pred EEEEEcCCCCeEEEecCCCe-------------EEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc--
Q psy11529 13 TTHAWNNTRQQLAFTPNNQE-------------VHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR-- 77 (244)
Q Consensus 13 ~~~~~~~~~~~l~~~~~d~~-------------v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-- 77 (244)
..++|+|||+.|++++.+.. |++|++.++...-.++.....+...+.++.|+|||++|+.++.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 67899999999999887765 999999762110123334444566789999999999998877665
Q ss_pred --cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC----CCeEEEEEeecCCCceEEEeeecCC-CCce
Q psy11529 78 --NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG----ARLISVCYFESENDWWVAKHIKKPI-KSTI 150 (244)
Q Consensus 78 --~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v 150 (244)
.|.+|+ ..++... .+..+...+....+ +++. ++..+. ++.|.+||+++..... .......+ ...+
T Consensus 251 ~~~l~~~~--~~~~~~~---~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~l 322 (695)
T 2bkl_A 251 ENDVYWKR--PGEKDFR---LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS-WKEIVPEDSSASL 322 (695)
T ss_dssp EEEEEEEC--TTCSSCE---EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG-CEEEECCCSSCEE
T ss_pred ceEEEEEc--CCCCceE---EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC-CeEEecCCCCCeE
Confidence 666666 5555432 22334455566666 5666 554443 5789999887654200 11222222 4567
Q ss_pred eEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEe--
Q psy11529 151 TCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT-- 228 (244)
Q Consensus 151 ~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-- 228 (244)
..++|+ ++.++++...|+..+||.+. ..++....+..+. ...+..++++|+++.++..
T Consensus 323 ~~~~~~-~~~lv~~~~~dg~~~l~~~~-----------------~~g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~s 382 (695)
T 2bkl_A 323 LSVSIV-GGHLSLEYLKDATSEVRVAT-----------------LKGKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFT 382 (695)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEE-----------------TTCCEEEECCCSS--SSEECCCBSCTTCSEEEEEEE
T ss_pred EEEEEE-CCEEEEEEEECCEEEEEEEe-----------------CCCCeeEEecCCC--CeEEEEeecCCCCCEEEEEEc
Confidence 888888 67788888999998888763 1244444454331 4567788899999866632
Q ss_pred --eCCCcEEEEeCCC
Q psy11529 229 --SHDGSINVRMSQQ 241 (244)
Q Consensus 229 --~~dg~i~vwd~~~ 241 (244)
...++|++||+.+
T Consensus 383 s~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 383 SFTTPRQIYKTSVST 397 (695)
T ss_dssp ETTEEEEEEEEETTT
T ss_pred CCCCCCEEEEEECCC
Confidence 2357899999865
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=1.2e-13 Score=110.25 Aligned_cols=211 Identities=9% Similarity=0.003 Sum_probs=140.1
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeec--cCCCcceeeeeeccCCCceEEEEeC----CCCCeEEEEeC-CccEEEE
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYE--KAANDWSQLDVLDGHDLKVTGIDWA----PNTNRIVTCSA-DRNAYVW 82 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~i~iw 82 (244)
..+..+.|+|||+++++++.++.|.+||+. + . +.+..+.. ......++|+ |+|+++++++. ++.+.++
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t--~--~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi 271 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE--P--TTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 271 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS--C--CEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCC--C--cEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence 456789999999999999999999999995 3 2 55666664 3345789999 69999887765 5899999
Q ss_pred eeeCCCCCceeeEEEec-----------------------------------------------------cCcceEEEEE
Q psy11529 83 TQNNDDKKWKPTLVLLR-----------------------------------------------------INRAATCVKW 109 (244)
Q Consensus 83 d~~~~~~~~~~~~~~~~-----------------------------------------------------~~~~v~~~~~ 109 (244)
| ..+.+........+ .......+.|
T Consensus 272 D--~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~ 349 (567)
T 1qks_A 272 D--GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL 349 (567)
T ss_dssp E--TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE
T ss_pred E--CCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceE
Confidence 9 66655433322110 0112335689
Q ss_pred CCCCCeEEEee-CCCeEEEEEeecCCCceEEEe-eecCCCCceeEEEecCCCC-EEEEee-CCCeEEEEEeeecccccCC
Q psy11529 110 SPLENKFAAGS-GARLISVCYFESENDWWVAKH-IKKPIKSTITCLDWHPNNH-LLGCGS-TDFKVRVFSAYIKDIESAP 185 (244)
Q Consensus 110 ~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~ 185 (244)
+|++++++++. .++.|.++|..+++....... -..+|.+.-..+ ++|++. ..+++. .++.|.++|.....-.
T Consensus 350 ~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~--- 425 (567)
T 1qks_A 350 DGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP--- 425 (567)
T ss_dssp CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT---
T ss_pred CCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc---
Confidence 99999987765 578999999988764222222 123443322222 588754 445554 4689999998421100
Q ss_pred CCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeC-------CCcEEEEeCCCC
Q psy11529 186 QSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSH-------DGSINVRMSQQV 242 (244)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------dg~i~vwd~~~~ 242 (244)
....+.+.++... ...-..+..+|++++|.+... ..+|.++|+.++
T Consensus 426 --------~~~~kvv~~i~~~---g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 426 --------DNAWKILDSFPAL---GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp --------TTBTSEEEEEECS---CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred --------cccCEEEEEEecC---CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 0125677777664 333345778999998887652 359999999876
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=1.2e-13 Score=100.97 Aligned_cols=186 Identities=7% Similarity=-0.071 Sum_probs=136.3
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccC-CCceEEEEeCCCCCeEEEEeC-CccEEEEeeeCC
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH-DLKVTGIDWAPNTNRIVTCSA-DRNAYVWTQNND 87 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~ 87 (244)
..+.+++++|+|++|++ .++.|..||.++ +.+..+..+ ...+.++.+.++|+.+++.+. ++.+..+| .
T Consensus 37 ~~~~~~~~~pdG~ilvs--~~~~V~~~d~~G-----~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd--~- 106 (276)
T 3no2_A 37 WECNSVAATKAGEILFS--YSKGAKMITRDG-----RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVN--M- 106 (276)
T ss_dssp CCCCEEEECTTSCEEEE--CBSEEEEECTTS-----CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEEC--T-
T ss_pred CCCcCeEECCCCCEEEe--CCCCEEEECCCC-----CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEe--C-
Confidence 36889999999998883 467899999954 667777654 357889999999999998877 77787777 4
Q ss_pred CCCceeeEEEec----cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 88 DKKWKPTLVLLR----INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 88 ~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
+++......... +......+++.++|+++++...++.|..||.+ ++..+.... ...+.++...++|+.++
T Consensus 107 ~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~-----~~~~~~~~~~~~g~~~v 180 (276)
T 3no2_A 107 KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL-----SGTPFSSAFLDNGDCLV 180 (276)
T ss_dssp TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC-----SSCCCEEEECTTSCEEE
T ss_pred CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC-----CCCccceeEcCCCCEEE
Confidence 666544444321 12345567889999999999999999999987 665333322 13556778889999999
Q ss_pred EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC---CCCCeEEEEEecCCCEEEEee
Q psy11529 164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS---GGGWIHSVAFSKDGNKLCWTS 229 (244)
Q Consensus 164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~ 229 (244)
++..+++|..+|. .+++.+.++..... ....+..++..++|.++++..
T Consensus 181 ~~~~~~~v~~~d~------------------~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 181 ACGDAHCFVQLNL------------------ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp ECBTTSEEEEECT------------------TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EeCCCCeEEEEeC------------------cCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 9988889999997 55777777653200 023377888888998887763
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.66 E-value=7.7e-13 Score=97.53 Aligned_cols=198 Identities=11% Similarity=-0.035 Sum_probs=139.1
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD 88 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 88 (244)
...+.+++++++|+++++...++.|..|+..+ . .....+......+.+++++++++++++...++.|..|| . +
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d--~-~ 128 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKKG--I--IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRIT--D-D 128 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTS--C--EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC--T-T
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCCC--c--EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEEC--C-C
Confidence 45788999999999888777678899998764 2 11222223456789999999998888777788999999 5 5
Q ss_pred CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529 89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD 168 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 168 (244)
++.. ..........+..+++.++++.+++...++.|..||. +++. ...........+..++++++|+++++...+
T Consensus 129 g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 203 (299)
T 2z2n_A 129 GKIR-EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI---TEFKIPTPASGPVGITKGNDDALWFVEIIG 203 (299)
T ss_dssp CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred CCEE-EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE---EEeeCCCCCCcceeEEECCCCCEEEEccCC
Confidence 5432 2222233456899999999987777666788999887 4432 111122234568899999999877776668
Q ss_pred CeEEEEEeeecccccCCCCCCCCcccccccee-EEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL-VELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 240 (244)
+.|.+||. . ++.. .....+ ...+.+++++++|+++++...++.|..||..
T Consensus 204 ~~i~~~~~-~------------------g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 204 NKIGRITT-S------------------GEITEFKIPTP---NARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp TEEEEECT-T------------------CCEEEEECSST---TCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred ceEEEECC-C------------------CcEEEEECCCC---CCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 89999986 1 2211 112223 5678999999999977766577889999863
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.66 E-value=6.9e-13 Score=97.77 Aligned_cols=197 Identities=9% Similarity=-0.060 Sum_probs=139.2
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD 88 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 88 (244)
...+.++++.++|+.+++...++.|.+|+... . ........+...+.++++++++..+++...++.|..|| ..
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~--~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~--~~- 86 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLDG--K--ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRIT--KK- 86 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTTC--C--EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC--TT-
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCCC--C--eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEEC--CC-
Confidence 46799999999999887776678999999764 2 12222233456789999999999888776688899999 54
Q ss_pred CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529 89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD 168 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 168 (244)
++. ...........+..+++.|+++++++...++.|..||. .+.. ...........+..++++++|+++++...+
T Consensus 87 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 161 (299)
T 2z2n_A 87 GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI---REYELPNKGSYPSFITLGSDNALWFTENQN 161 (299)
T ss_dssp SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE---EEecCCCCCCCCceEEEcCCCCEEEEeCCC
Confidence 432 12222224457889999999988777777888999887 3332 111222234578899999999888777677
Q ss_pred CeEEEEEeeecccccCCCCCCCCccccccceeE-EecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV-ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS 239 (244)
Q Consensus 169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 239 (244)
+.|..||. . ++... ..... ...+..++++++|+++++...++.|.+||.
T Consensus 162 ~~i~~~~~-~------------------g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 162 NAIGRITE-S------------------GDITEFKIPTP---ASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp TEEEEECT-T------------------CCEEEEECSST---TCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CEEEEEcC-C------------------CcEEEeeCCCC---CCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 88999986 1 22221 12222 456889999999997777666788999987
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.66 E-value=6.3e-14 Score=105.10 Aligned_cols=195 Identities=8% Similarity=-0.015 Sum_probs=130.6
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCC-----CceEEEEeCCCCCeEEEEe--CCccEEE
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHD-----LKVTGIDWAPNTNRIVTCS--ADRNAYV 81 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~d~~i~i 81 (244)
......++++++++.+++...++.|.+||..+ + +....+.... .....+++ ++..++.+. .++.|.+
T Consensus 83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t--~--~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~v 156 (328)
T 3dsm_A 83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT--Y--EITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILK 156 (328)
T ss_dssp CSSEEEEEEEETTEEEEEEBSCSEEEEEETTT--T--EEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEE
T ss_pred CCCCcEEEEeCCCeEEEEECCCCeEEEEECCC--C--eEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEE
Confidence 45678899999986555554789999999977 4 4444444222 14456777 344555444 4889999
Q ss_pred EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC----------CeEEEEEeecCCCceEEEeeecCCCCcee
Q psy11529 82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA----------RLISVCYFESENDWWVAKHIKKPIKSTIT 151 (244)
Q Consensus 82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 151 (244)
+| ..+++....+. .......++++|+|++++++..+ +.|.++|..+.+. ......+......
T Consensus 157 iD--~~t~~~~~~i~---~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v---~~~~~~~~g~~p~ 228 (328)
T 3dsm_A 157 ID--TETDKVVDELT---IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV---EKQFKFKLGDWPS 228 (328)
T ss_dssp EE--TTTTEEEEEEE---CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE---EEEEECCTTCCCE
T ss_pred EE--CCCCeEEEEEE---cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE---EEEEecCCCCCce
Confidence 99 77776544333 23456788999999877776654 7899998877653 2222222234688
Q ss_pred EEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE--EecCCCCCCCCeEEEEEec-CCCEEEEe
Q psy11529 152 CLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV--ELNNSSSGGGWIHSVAFSK-DGNKLCWT 228 (244)
Q Consensus 152 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~-~~~~l~~~ 228 (244)
.++++|+++.|+++.. .|.+||..+ ++... .+... ......++++| +++++++.
T Consensus 229 ~la~~~d~~~lyv~~~--~v~~~d~~t------------------~~~~~~~~~~~~---~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN--DIWRMPVEA------------------DRVPVRPFLEFR---DTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp EEEECTTSCEEEEESS--SEEEEETTC------------------SSCCSSCSBCCC---SSCEEEEEECTTTCCEEEEE
T ss_pred eEEEecCCCEEEEEcc--EEEEEECCC------------------CceeeeeeecCC---CCceEEEEEcCCCCeEEEEc
Confidence 9999999998887654 899999832 22211 01111 35678999999 56666665
Q ss_pred ----eCCCcEEEEeCC
Q psy11529 229 ----SHDGSINVRMSQ 240 (244)
Q Consensus 229 ----~~dg~i~vwd~~ 240 (244)
..++.|.+||.+
T Consensus 286 ~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 286 AIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CTTSSSEEEEEEECTT
T ss_pred ccccccCCEEEEECCC
Confidence 568899999976
No 196
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=3.6e-13 Score=107.63 Aligned_cols=194 Identities=8% Similarity=-0.062 Sum_probs=134.3
Q ss_pred CCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC--CCCceeeEE
Q psy11529 19 NTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND--DKKWKPTLV 96 (244)
Q Consensus 19 ~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~ 96 (244)
|.+..+++...++.|.++|..+ + +.+..+. ....+..+.|+|+|+++++++.|+.|.+|| +. +.+... .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t--~--~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD--~~~~t~~~v~--~ 235 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGST--Y--EIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMID--LWMKEPTTVA--E 235 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTT--C--CEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEE--TTSSSCCEEE--E
T ss_pred CCceEEEEeCCCCeEEEEECCC--C--eEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEE--CCCCCCcEeE--E
Confidence 3445667777889999999987 4 5566665 344567999999999999999999999999 64 554332 2
Q ss_pred EeccCcceEEEEEC----CCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecC------C-CCceeEEEecCCCCE-EE
Q psy11529 97 LLRINRAATCVKWS----PLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKP------I-KSTITCLDWHPNNHL-LG 163 (244)
Q Consensus 97 ~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~------~-~~~v~~~~~~p~~~~-l~ 163 (244)
+. .......++|+ |+|+++++++. ++.+.++|..+.+........... | ...+..+..++++.. ++
T Consensus 236 i~-~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv 314 (567)
T 1qks_A 236 IK-IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 314 (567)
T ss_dssp EE-CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred Ee-cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEE
Confidence 22 23456899999 69999887765 689999998776652222111100 1 126778888988764 44
Q ss_pred EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCCCC
Q psy11529 164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQQV 242 (244)
Q Consensus 164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~ 242 (244)
....+|.|.++|....+ ...+..+.. ......+.|+|+|++++++. .++.|.++|+++.
T Consensus 315 ~~~~~g~v~~vd~~~~~----------------~~~v~~i~~----~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 315 NVKETGKILLVDYTDLN----------------NLKTTEISA----ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EETTTTEEEEEETTCSS----------------EEEEEEEEC----CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EecCCCeEEEEecCCCc----------------cceeeeeec----cccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 45567999999973110 112233332 45678899999999887665 5789999999864
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.65 E-value=8.5e-13 Score=98.10 Aligned_cols=201 Identities=9% Similarity=0.028 Sum_probs=132.7
Q ss_pred CceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCcceee-eee-cc-CCCceEEEEeCCCCCeEEEEeCC---------
Q psy11529 10 NPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDWSQL-DVL-DG-HDLKVTGIDWAPNTNRIVTCSAD--------- 76 (244)
Q Consensus 10 ~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~~~~-~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d--------- 76 (244)
..+.+++++++ |+++++.. .+.|.+|+.++ . .... ... .. ....+.+++++++|+++++...+
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~g--~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADM-RLGLLVVQTDG--T-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp CCEEEEEECSSSSEEEEEET-TTEEEEEETTS--C-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCceEEEecCCCcEEEEEC-CCCEEEEeCCC--C-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 56889999999 76565554 44788888763 2 1111 111 11 12457899999999887776554
Q ss_pred ------ccEEEEeeeCCCCCceeeEEEeccCcceEEEEEC----CCCCeEEEe-eCCCeEEEEEeecCCCceE--EEeee
Q psy11529 77 ------RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS----PLENKFAAG-SGARLISVCYFESENDWWV--AKHIK 143 (244)
Q Consensus 77 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~d~~i~i~d~~~~~~~~~--~~~~~ 143 (244)
+.|..|+ .. ++.... .........++|+ |+++.++++ ..++.|.+|+++....... .....
T Consensus 147 ~~~~~~~~l~~~~--~~-g~~~~~---~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 220 (314)
T 1pjx_A 147 SMQEKFGSIYCFT--TD-GQMIQV---DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI 220 (314)
T ss_dssp TTSSSCEEEEEEC--TT-SCEEEE---EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred cccCCCCeEEEEC--CC-CCEEEe---ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC
Confidence 4666666 44 443222 2233456789999 998766555 4678999999873221100 11112
Q ss_pred cCCC-CceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC
Q psy11529 144 KPIK-STITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG 222 (244)
Q Consensus 144 ~~~~-~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 222 (244)
..+. ..+..++++++|+++++...++.|.+||. .+++.+..+..+ ...+.+++|+|+|
T Consensus 221 ~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~------------------~~g~~~~~~~~~---~~~~~~i~~~~dg 279 (314)
T 1pjx_A 221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP------------------DGGQPKMRIRCP---FEKPSNLHFKPQT 279 (314)
T ss_dssp CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT------------------TCBSCSEEEECS---SSCEEEEEECTTS
T ss_pred CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC------------------CCCcEeEEEeCC---CCCceeEEECCCC
Confidence 2222 56788999999998888778899999997 335555555555 5789999999999
Q ss_pred CEEE-EeeCCCcEEEEeCCC
Q psy11529 223 NKLC-WTSHDGSINVRMSQQ 241 (244)
Q Consensus 223 ~~l~-~~~~dg~i~vwd~~~ 241 (244)
+.|+ +...++.|..|++..
T Consensus 280 ~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 280 KTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEeCCCCeEEEEeCCC
Confidence 9554 455678899999763
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.64 E-value=1.6e-13 Score=102.82 Aligned_cols=194 Identities=9% Similarity=0.006 Sum_probs=132.0
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK 90 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 90 (244)
....+.+. +++.+++...++.|.++|..+ + +.+.++. .......++++++++.+++...++.|.+|| ..+++
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t--~--~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD--~~t~~ 116 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINT--F--KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIIN--PKTYE 116 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTT--C--CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEE--TTTTE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcc--c--EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEE--CCCCe
Confidence 35667764 355566666679999999987 4 5555664 346678999998885444444789999999 77776
Q ss_pred ceeeEEEec---cCcceEEEEECCCCCeEEEee--CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 91 WKPTLVLLR---INRAATCVKWSPLENKFAAGS--GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 91 ~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
......... .......+++ ++..++++. .++.|.++|.++.+. ...... ......+.++|+|++++++
T Consensus 117 ~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~---~~~i~~--g~~p~~i~~~~dG~l~v~~ 189 (328)
T 3dsm_A 117 ITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV---VDELTI--GIQPTSLVMDKYNKMWTIT 189 (328)
T ss_dssp EEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE---EEEEEC--SSCBCCCEECTTSEEEEEB
T ss_pred EEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE---EEEEEc--CCCccceEEcCCCCEEEEE
Confidence 443333211 0014566777 444555554 488999999988754 222222 2345789999999977776
Q ss_pred eCC----------CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEE
Q psy11529 166 STD----------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSIN 235 (244)
Q Consensus 166 ~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 235 (244)
..+ +.|.++|. .+++....+.... ......++|+|+++.|+++.. .|.
T Consensus 190 ~~~~~~~~~~~~~~~v~~id~------------------~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~ 247 (328)
T 3dsm_A 190 DGGYEGSPYGYEAPSLYRIDA------------------ETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIW 247 (328)
T ss_dssp CCBCTTCSSCBCCCEEEEEET------------------TTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEE
T ss_pred CCCccCCccccCCceEEEEEC------------------CCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEE
Confidence 654 78999998 5566655554321 336899999999998887754 899
Q ss_pred EEeCCC
Q psy11529 236 VRMSQQ 241 (244)
Q Consensus 236 vwd~~~ 241 (244)
+||+.+
T Consensus 248 ~~d~~t 253 (328)
T 3dsm_A 248 RMPVEA 253 (328)
T ss_dssp EEETTC
T ss_pred EEECCC
Confidence 999865
No 199
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.63 E-value=2.3e-12 Score=95.25 Aligned_cols=192 Identities=11% Similarity=0.063 Sum_probs=127.0
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc--CCCceEEEEeCCCCCeEEEEeCC---------c
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG--HDLKVTGIDWAPNTNRIVTCSAD---------R 77 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d---------~ 77 (244)
...+.+++++++|+++++ . ++.|.+||.++ +..+.+..... ....++.++++|+|+++++.... .
T Consensus 53 ~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~--g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~ 128 (297)
T 3g4e_A 53 DAPVSSVALRQSGGYVAT-I-GTKFCALNWKE--QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERH 128 (297)
T ss_dssp SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT--TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTT
T ss_pred CCceEEEEECCCCCEEEE-E-CCeEEEEECCC--CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCC
Confidence 467899999999996554 3 56899999876 43333332221 12457899999999976654321 2
Q ss_pred cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecCC-CceEEE--eeecCCCCceeEE
Q psy11529 78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAG-SGARLISVCYFESEN-DWWVAK--HIKKPIKSTITCL 153 (244)
Q Consensus 78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~-~~~~~~--~~~~~~~~~v~~~ 153 (244)
.-.+|.++. .++... ........+.++|+|+++.|+.+ +.++.|.+|+++... ...... ............+
T Consensus 129 ~~~l~~~d~-~g~~~~---~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~ 204 (297)
T 3g4e_A 129 QGALYSLFP-DHHVKK---YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGM 204 (297)
T ss_dssp CEEEEEECT-TSCEEE---EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEE
T ss_pred CcEEEEEEC-CCCEEE---EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCee
Confidence 345555313 333221 22334557899999999876554 557889999985222 111111 1112233567899
Q ss_pred EecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe-cCCCEEEEee
Q psy11529 154 DWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS-KDGNKLCWTS 229 (244)
Q Consensus 154 ~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 229 (244)
+++++|++.++....+.|.+||. .+++.+..+..+ ...+++++|. |+++.|+..+
T Consensus 205 ~~d~~G~lwva~~~~~~v~~~d~------------------~tG~~~~~i~~p---~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 205 CIDAEGKLWVACYNGGRVIRLDP------------------VTGKRLQTVKLP---VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEBTTSCEEEEEETTTEEEEECT------------------TTCCEEEEEECS---SSBEEEEEEESGGGCEEEEEE
T ss_pred EECCCCCEEEEEcCCCEEEEEcC------------------CCceEEEEEECC---CCCceEEEEeCCCCCEEEEEc
Confidence 99999988888777889999997 567888888776 6789999998 8887655443
No 200
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.62 E-value=3.7e-13 Score=103.77 Aligned_cols=203 Identities=10% Similarity=-0.032 Sum_probs=131.0
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc--cEEEEeeeCC
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR--NAYVWTQNND 87 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~ 87 (244)
.....++|+++++++++...++.|++|+..+ + ........ ..... ++|+|+++.|+++..++ .|.+++ ..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~--g--~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d--~~ 202 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDD--N--KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYM--KA 202 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTT--T--EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEE--GG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCC--C--EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEE--cC
Confidence 4678899999999888877789999999986 3 22222332 23334 99999999988887765 788888 54
Q ss_pred CCCceeeE-EEec-cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCce--eEEEecCC-CCEE
Q psy11529 88 DKKWKPTL-VLLR-INRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTI--TCLDWHPN-NHLL 162 (244)
Q Consensus 88 ~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~p~-~~~l 162 (244)
.+...... .... ....+.+++++|++..|+++..++.|+.||.+..................- ..++|+|+ +.++
T Consensus 203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 44321111 1112 345678999999655666677788899999876643100000011121222 39999995 5566
Q ss_pred EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC------------CCCCCeEEEEEecCCCEEEEee-
Q psy11529 163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS------------SGGGWIHSVAFSKDGNKLCWTS- 229 (244)
Q Consensus 163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~~~~- 229 (244)
++-..++.|+.|+... . +..+.++. ..-.....++++|+|+++++-+
T Consensus 283 v~d~~~~~I~~~~~~g-------------------~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~ 342 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDG-------------------E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF 342 (409)
T ss_dssp EEETTTTEEEEECTTC-------------------C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT
T ss_pred EEeCCCCEEEEEecCC-------------------C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC
Confidence 6666778999998631 1 11111110 0023478999999999777777
Q ss_pred CCCcEEEEeCC
Q psy11529 230 HDGSINVRMSQ 240 (244)
Q Consensus 230 ~dg~i~vwd~~ 240 (244)
.++.|+.|++.
T Consensus 343 ~~~~I~~~~~~ 353 (409)
T 3hrp_A 343 KGYCLRKLDIL 353 (409)
T ss_dssp TTCEEEEEETT
T ss_pred CCCEEEEEECC
Confidence 78899999954
No 201
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.62 E-value=1.1e-12 Score=96.94 Aligned_cols=204 Identities=11% Similarity=0.077 Sum_probs=131.5
Q ss_pred CceEEEEEcCCC-CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529 10 NPVTTHAWNNTR-QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD 88 (244)
Q Consensus 10 ~~v~~~~~~~~~-~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 88 (244)
.--.+..|+|++ .++++...++.|+.|+..+ + ....+. ....+.+++++++|+++++ . +..|.+|| ..+
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~--~---~~~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d--~~~ 82 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFT--K---QVQRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALN--WKE 82 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTT--C---CEEEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEE--TTT
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCC--C---cEEEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEE--CCC
Confidence 445688999965 4566666788999999877 3 223333 4577999999999995554 3 56799999 777
Q ss_pred CCceeeEEEec--cCcceEEEEECCCCCeEEEeeC---------CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529 89 KKWKPTLVLLR--INRAATCVKWSPLENKFAAGSG---------ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP 157 (244)
Q Consensus 89 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 157 (244)
++......... ....++.++++|+|+++++... ...-.+|.++..... ... .......+.++|+|
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~---~~~-~~~~~~pngi~~sp 158 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV---KKY-FDQVDISNGLDWSL 158 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE---EEE-EEEESBEEEEEECT
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE---EEE-eeccccccceEEcC
Confidence 66433322111 1245789999999996665432 234567777654331 111 12224567899999
Q ss_pred CCCEEE-EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEE
Q psy11529 158 NNHLLG-CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236 (244)
Q Consensus 158 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 236 (244)
+++.|+ +.+.++.|.+||+....-. ....+.+..+..+ ......++++++|++.++....+.|.+
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~-----------~~~~~~~~~~~~~---~~~p~g~~~d~~G~lwva~~~~~~v~~ 224 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQ-----------ISNRRSVYKLEKE---EQIPDGMCIDAEGKLWVACYNGGRVIR 224 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCC-----------EEEEEEEEECCGG---GCEEEEEEEBTTSCEEEEEETTTEEEE
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCc-----------ccCcEEEEECCCC---CCCCCeeEECCCCCEEEEEcCCCEEEE
Confidence 998664 4555789999997311000 0011223333333 456789999999998888777888999
Q ss_pred EeCCC
Q psy11529 237 RMSQQ 241 (244)
Q Consensus 237 wd~~~ 241 (244)
||.++
T Consensus 225 ~d~~t 229 (297)
T 3g4e_A 225 LDPVT 229 (297)
T ss_dssp ECTTT
T ss_pred EcCCC
Confidence 99863
No 202
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.61 E-value=1.4e-12 Score=96.84 Aligned_cols=191 Identities=12% Similarity=0.046 Sum_probs=126.9
Q ss_pred eCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeee-eeccC-CCceEEEEeCCCCCeEEE----EeC-----
Q psy11529 7 FGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLD-VLDGH-DLKVTGIDWAPNTNRIVT----CSA----- 75 (244)
Q Consensus 7 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~~----~~~----- 75 (244)
.....+..++++++|+++++...++.|.+|+.++ . ...+. ...+. ...++.++++|+|+.+++ |..
T Consensus 83 ~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g--~-~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~ 159 (305)
T 3dr2_A 83 DATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG--Q-AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQG 159 (305)
T ss_dssp ESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS--C-EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGS
T ss_pred CCCCccceeeECCCCCEEEEECCCCEEEEECCCC--C-EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccc
Confidence 3456788999999999777666667899998754 2 12221 11111 234678999999998876 332
Q ss_pred --------CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC------CeEEEEEeecCCCceEEEe
Q psy11529 76 --------DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA------RLISVCYFESENDWWVAKH 141 (244)
Q Consensus 76 --------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~ 141 (244)
.+.|..+| ..+++..... .......++|+|+++.|+++... +.|.+|++.... ......
T Consensus 160 ~~~~~~~~~~~v~~~d--~~~g~~~~~~----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~ 232 (305)
T 3dr2_A 160 CPADPELAHHSVYRLP--PDGSPLQRMA----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRH 232 (305)
T ss_dssp CCCCCSSSCEEEEEEC--SSSCCCEEEE----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEE
T ss_pred cccccccCCCeEEEEc--CCCCcEEEEe----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeE
Confidence 24566666 6566543222 33456789999999988877665 689999987653 111112
Q ss_pred eecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC
Q psy11529 142 IKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD 221 (244)
Q Consensus 142 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 221 (244)
...........++++++|++.++ +.+ .|.+|+. .++.+..+..+ . .+.+++|+|+
T Consensus 233 ~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-------------------~g~~~~~~~~~---~-~~~~~~f~~d 287 (305)
T 3dr2_A 233 FASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-------------------DGQLLGHIPTP---G-TASNCTFDQA 287 (305)
T ss_dssp EECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-------------------TSCEEEEEECS---S-CCCEEEECTT
T ss_pred EEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-------------------CCCEEEEEECC---C-ceeEEEEeCC
Confidence 22222345667899999985544 444 4888985 46677777664 4 5889999999
Q ss_pred CCEEEEeeCCC
Q psy11529 222 GNKLCWTSHDG 232 (244)
Q Consensus 222 ~~~l~~~~~dg 232 (244)
++.|..++.++
T Consensus 288 ~~~L~it~~~~ 298 (305)
T 3dr2_A 288 QQRLFITGGPC 298 (305)
T ss_dssp SCEEEEEETTE
T ss_pred CCEEEEEcCCe
Confidence 98888777654
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.61 E-value=1.9e-13 Score=113.24 Aligned_cols=196 Identities=10% Similarity=-0.051 Sum_probs=121.1
Q ss_pred cCCCCeEEEecCCC---eEEEeeeccC---CCcceeeee----eccCCCceEEEEeCCCCCeEEEEeCC-----ccEEEE
Q psy11529 18 NNTRQQLAFTPNNQ---EVHLYQYEKA---ANDWSQLDV----LDGHDLKVTGIDWAPNTNRIVTCSAD-----RNAYVW 82 (244)
Q Consensus 18 ~~~~~~l~~~~~d~---~v~v~~~~~~---~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw 82 (244)
+|+|++++....++ .-.+|..... ++..+.+.. -.+|...+..++|||||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 48999888765433 2555655321 132222211 12234478899999999999877653 469999
Q ss_pred eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCe--------------EEEEEeecCCCceEEEeeecCCCC
Q psy11529 83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL--------------ISVCYFESENDWWVAKHIKKPIKS 148 (244)
Q Consensus 83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------i~i~d~~~~~~~~~~~~~~~~~~~ 148 (244)
| +.+++.... . .....+..++|+|| +.|+.+..++. |++|++.+.............+..
T Consensus 195 d--l~tg~~~~~-~--~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~ 268 (741)
T 1yr2_A 195 G--VADGKPLAD-E--LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPK 268 (741)
T ss_dssp E--TTTCCEEEE-E--EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred E--CCCCCCCCc-c--CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCe
Confidence 9 788875332 1 12222467899999 99888876553 778887655421112222222333
Q ss_pred ceeEEEecCCCCEEEEeeCCC-----eEEEEEeeecccccCCCCCCCCcccccc--ceeEEecCCCCCCCCeEEEEEecC
Q psy11529 149 TITCLDWHPNNHLLGCGSTDF-----KVRVFSAYIKDIESAPQSTNWGSKSTLG--NCLVELNNSSSGGGWIHSVAFSKD 221 (244)
Q Consensus 149 ~v~~~~~~p~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~ 221 (244)
.+..+.|+|||++|+..+.++ .|++||+. .+ +....+..+ ...+... ++|+
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~------------------~~~~~~~~~l~~~---~~~~~~~-~~~d 326 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT------------------NGKIGPVTALIPD---LKAQWDF-VDGV 326 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE------------------TTEECCCEEEECS---SSSCEEE-EEEE
T ss_pred EEEEEEECCCCCEEEEEEEccCCCcceEEEEECC------------------CCCCcccEEecCC---CCceEEE-Eecc
Confidence 588999999999888777543 89999983 23 213334443 3344444 3588
Q ss_pred CCEEEEeeCC----CcEEEEeCCC
Q psy11529 222 GNKLCWTSHD----GSINVRMSQQ 241 (244)
Q Consensus 222 ~~~l~~~~~d----g~i~vwd~~~ 241 (244)
|+.|+..+.+ +.|.+||+.+
T Consensus 327 g~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 327 GDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp TTEEEEEECTTCTTCEEEEEECSS
T ss_pred CCEEEEEECCCCCCCEEEEEeCCC
Confidence 9988777653 4599999865
No 204
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.61 E-value=7e-13 Score=100.69 Aligned_cols=89 Identities=13% Similarity=0.049 Sum_probs=69.9
Q ss_pred EEECCCCCeEEEeeC-----------CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEE
Q psy11529 107 VKWSPLENKFAAGSG-----------ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFS 175 (244)
Q Consensus 107 ~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d 175 (244)
++|+|+++.++++.. .+.|.+||+.+.+. .... ..+. +.+++|+|||++|++++. +.|.+||
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~---v~~i-~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D 331 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR---VARI-PGRD--ALSMTIDQQRNLMLTLDG-GNVNVYD 331 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE---EEEE-ECTT--CCEEEEETTTTEEEEECS-SCEEEEE
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE---EEEE-ecCC--eeEEEECCCCCEEEEeCC-CeEEEEE
Confidence 789999888777643 35799999888754 2222 2332 899999999999998886 9999999
Q ss_pred eeecccccCCCCCCCCcccccc--ceeEEecCCCCCCCCeEEEEEecCCC
Q psy11529 176 AYIKDIESAPQSTNWGSKSTLG--NCLVELNNSSSGGGWIHSVAFSKDGN 223 (244)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~ 223 (244)
. .++ +.+..+... ......++++|+|+
T Consensus 332 ~------------------~t~~l~~~~~i~~~---G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 332 I------------------SQPEPKLLRTIEGA---AEASLQVQFHPVGG 360 (361)
T ss_dssp C------------------SSSSCEEEEEETTS---CSSEEEEEECCCSC
T ss_pred C------------------CCCcceeeEEeccC---CCCcEEEEecCCCC
Confidence 9 677 888887655 77789999999986
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.60 E-value=5.8e-12 Score=92.83 Aligned_cols=197 Identities=9% Similarity=-0.074 Sum_probs=136.7
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK 89 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 89 (244)
..+.++++.++|+++++...++.|..++..+ . .....+......+.+++++++++++++...++.|..+| .. +
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g--~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~--~~-g 134 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKKG--G--FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLT--AD-G 134 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTS--C--EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC--TT-S
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCCC--C--eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEEC--CC-C
Confidence 5688999999999887776678899998764 2 22222332346789999999998887776678899999 55 5
Q ss_pred CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC
Q psy11529 90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF 169 (244)
Q Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 169 (244)
+.. ..........+..+++.++++.+++...++.|..++. .++. ...........+..++++++|+++++....+
T Consensus 135 ~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~---~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 209 (300)
T 2qc5_A 135 TIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKL---EEYPLPTNAAAPVGITSGNDGALWFVEIMGN 209 (300)
T ss_dssp CEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred CEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcE---EEeeCCCCCCCcceEEECCCCCEEEEccCCC
Confidence 432 2222223467889999999986666666788888887 3332 1111222335688999999998777766677
Q ss_pred eEEEEEeeecccccCCCCCCCCccccccceeE-EecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529 170 KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV-ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 170 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 240 (244)
.|.+||. .++... ....+ ...+.+++++++|++.++...++.|..||..
T Consensus 210 ~i~~~~~-------------------~g~~~~~~~~~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 210 KIGRITT-------------------TGEISEYDIPTP---NARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp EEEEECT-------------------TCCEEEEECSST---TCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred EEEEEcC-------------------CCcEEEEECCCC---CCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 8999985 122221 12223 5668899999999977766667889988864
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.60 E-value=5.4e-12 Score=93.00 Aligned_cols=198 Identities=7% Similarity=-0.090 Sum_probs=138.5
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD 88 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 88 (244)
...+.++++.++|+.+++...++.|.+|+... . .....+......+.+++++++++.+++...++.|..+| ..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~--~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d--~~- 91 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQSG--R--IKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLS--KK- 91 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTS--C--EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC--TT-
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCCC--c--eEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEEC--CC-
Confidence 45788999999999888777789999999763 2 12222333446789999999998777766678899999 55
Q ss_pred CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCC
Q psy11529 89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTD 168 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 168 (244)
++.. ..........+..+++.++++++++...++.|..++.+ ++. ...........+..++++++|+++++...+
T Consensus 92 g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~---~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 166 (300)
T 2qc5_A 92 GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI---YEYDLPNKGSYPAFITLGSDNALWFTENQN 166 (300)
T ss_dssp SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE---EEEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE---EEccCCCCCCCceeEEECCCCCEEEEecCC
Confidence 5432 22222234678999999999887777667888888876 332 111122234578899999999977766667
Q ss_pred CeEEEEEeeecccccCCCCCCCCccccccceeE-EecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV-ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 240 (244)
+.|..+|. .++... ....+ ...+..++++++|++.++....+.|.+||..
T Consensus 167 ~~i~~~~~-------------------~g~~~~~~~~~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 217 (300)
T 2qc5_A 167 NSIGRITN-------------------TGKLEEYPLPTN---AAAPVGITSGNDGALWFVEIMGNKIGRITTT 217 (300)
T ss_dssp TEEEEECT-------------------TCCEEEEECSST---TCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred CeEEEECC-------------------CCcEEEeeCCCC---CCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence 88999885 122221 12222 4568899999999877776667789998873
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.60 E-value=1.5e-12 Score=96.77 Aligned_cols=204 Identities=10% Similarity=0.013 Sum_probs=129.4
Q ss_pred CCceEEEEEcCCCCeEEE-------ecCCCeEEEeeeccCCCcceeeee--eccCCCceEEEEeCCC-CCeEEEEeCCcc
Q psy11529 9 INPVTTHAWNNTRQQLAF-------TPNNQEVHLYQYEKAANDWSQLDV--LDGHDLKVTGIDWAPN-TNRIVTCSADRN 78 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~-------~~~d~~v~v~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~d~~ 78 (244)
-....+++|+++++++++ +..++.|.+|+..+ ++...... ..++...+.+++++++ ++++++.. .+.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~ 93 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLG 93 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT--CCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC--CcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCC
Confidence 345679999999988887 56788999999766 32222111 0124467899999998 76555443 447
Q ss_pred EEEEeeeCCCCCceee-EEEe--ccCcceEEEEECCCCCeEEEeeCC---------------CeEEEEEeecCCCceEEE
Q psy11529 79 AYVWTQNNDDKKWKPT-LVLL--RINRAATCVKWSPLENKFAAGSGA---------------RLISVCYFESENDWWVAK 140 (244)
Q Consensus 79 i~iwd~~~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~~d---------------~~i~i~d~~~~~~~~~~~ 140 (244)
|.+|| .. ++.... .... .....+.+++++++|+++++...+ +.|..++.+ .. ..
T Consensus 94 l~~~d--~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~---~~ 165 (314)
T 1pjx_A 94 LLVVQ--TD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQ---MI 165 (314)
T ss_dssp EEEEE--TT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SC---EE
T ss_pred EEEEe--CC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--CC---EE
Confidence 88999 65 553221 1100 112357899999999877766554 345555433 22 11
Q ss_pred eeecCCCCceeEEEec----CCCCEEEEe-eCCCeEEEEEeee-cccccCCCCCCCCccccccceeEEecCCCCCC-CCe
Q psy11529 141 HIKKPIKSTITCLDWH----PNNHLLGCG-STDFKVRVFSAYI-KDIESAPQSTNWGSKSTLGNCLVELNNSSSGG-GWI 213 (244)
Q Consensus 141 ~~~~~~~~~v~~~~~~----p~~~~l~~~-~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 213 (244)
.. .........++|+ |+++.++.+ ..++.|.+||+.. ... ...+....+..+ . ..+
T Consensus 166 ~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~-------------~~~~~~~~~~~~---~~~~p 228 (314)
T 1pjx_A 166 QV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI-------------ENKKVWGHIPGT---HEGGA 228 (314)
T ss_dssp EE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE-------------EEEEEEEECCCC---SSCEE
T ss_pred Ee-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc-------------ccceEEEECCCC---CCCCC
Confidence 11 1122356789999 999765544 5678999999741 100 001123333332 3 568
Q ss_pred EEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529 214 HSVAFSKDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 214 ~~~~~s~~~~~l~~~~~dg~i~vwd~~ 240 (244)
..++++++|+++++...++.|.+||.+
T Consensus 229 ~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 229 DGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 899999999988888788999999987
No 208
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.57 E-value=2.6e-13 Score=111.60 Aligned_cols=197 Identities=13% Similarity=0.080 Sum_probs=121.7
Q ss_pred CceEEEEEcCCCCeEEEe-----cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc-------
Q psy11529 10 NPVTTHAWNNTRQQLAFT-----PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR------- 77 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~-----~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------- 77 (244)
..+..++|||||++||.+ +....|+++|+.+ ++.... .+.. .....++|+ |++.|+.++.+.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t--g~~~~~-~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES--KQPLET-PLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT--CSEEEE-EEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC--CCCCcc-ccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 458889999999999864 3336899999987 422111 2221 113568899 999998887764
Q ss_pred ------cEEEEeeeCCCCCceeeEEEe--c-cCcceEEEEECCCCCeEEEeeC----CCeEEEEEeecCCCceEEEeeec
Q psy11529 78 ------NAYVWTQNNDDKKWKPTLVLL--R-INRAATCVKWSPLENKFAAGSG----ARLISVCYFESENDWWVAKHIKK 144 (244)
Q Consensus 78 ------~i~iwd~~~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~ 144 (244)
.|++|+ +.++......... . +......+.|+|||++|+.... ...+.++|++..... ... ..
T Consensus 203 ~~~~~~~v~~~~--lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~--~~~-l~ 277 (693)
T 3iuj_A 203 ARTDQHKVYFHR--LGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP--LLT-VQ 277 (693)
T ss_dssp --CCCCEEEEEE--TTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC--CEE-EE
T ss_pred ccCCCcEEEEEE--CCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc--eEE-Ee
Confidence 388999 6555432222222 2 3345778999999998765433 347888888776421 112 22
Q ss_pred CCCCceeEEEecCCCCEEEEee-CC---CeEEEEEeeecccccCCCCCCCCccccccce--eEEecCCCCCCCCeEEEEE
Q psy11529 145 PIKSTITCLDWHPNNHLLGCGS-TD---FKVRVFSAYIKDIESAPQSTNWGSKSTLGNC--LVELNNSSSGGGWIHSVAF 218 (244)
Q Consensus 145 ~~~~~v~~~~~~p~~~~l~~~~-~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~ 218 (244)
.+....... ++++|..|+..+ .+ +.|..+|+. .+.. ...+..+ ...+. .|
T Consensus 278 ~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~------------------~~~~~~~~~l~~~---~~~~~--~~ 333 (693)
T 3iuj_A 278 GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA------------------NPGPAHWRDLIPE---RQQVL--TV 333 (693)
T ss_dssp CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETT------------------SCCGGGCEEEECC---CSSCE--EE
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC------------------CCCccccEEEecC---CCCEE--EE
Confidence 233333343 667666555444 33 578888873 2221 2334444 44443 88
Q ss_pred ecCCCEEEEeeC-CC--cEEEEeCCC
Q psy11529 219 SKDGNKLCWTSH-DG--SINVRMSQQ 241 (244)
Q Consensus 219 s~~~~~l~~~~~-dg--~i~vwd~~~ 241 (244)
++++++|+.... ++ .|++|+++.
T Consensus 334 s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 334 HSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp EEETTEEEEEEEETTEEEEEEECTTS
T ss_pred EEECCEEEEEEEECCeeEEEEEECCC
Confidence 999988776654 44 688888753
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.56 E-value=9e-12 Score=93.30 Aligned_cols=199 Identities=7% Similarity=0.026 Sum_probs=125.9
Q ss_pred ceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529 11 PVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK 89 (244)
Q Consensus 11 ~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 89 (244)
-..+..|+|++. ++++...++.|..|+..+ + ....+. ....+.+++|+|+|+++++. .+ .|.+|| ..++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~--~---~~~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d--~~~g 119 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLAS--G---RKTVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRD--TATG 119 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTT--T---EEEEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEE--TTTC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCC--C---cEEEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEE--CCCC
Confidence 356889999754 556666678999999877 3 222333 35679999999999877754 34 488999 7777
Q ss_pred CceeeEEEec--cCcceEEEEECCCCCeEEEeeCC----CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 90 KWKPTLVLLR--INRAATCVKWSPLENKFAAGSGA----RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 90 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
+......... ....++.++++|+|+++++...+ ....+|.++.+ . ..... ........++|+|+++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g-~---~~~~~-~~~~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 120 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG-K---VTKLF-ADISIPNSICFSPDGTTGY 194 (326)
T ss_dssp CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT-E---EEEEE-EEESSEEEEEECTTSCEEE
T ss_pred cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCC-c---EEEee-CCCcccCCeEEcCCCCEEE
Confidence 6432221111 12458899999999876654321 23445555532 2 11111 1223567899999998665
Q ss_pred Ee-eCCCeEEEEEee--ec-ccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529 164 CG-STDFKVRVFSAY--IK-DIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS 239 (244)
Q Consensus 164 ~~-~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 239 (244)
.+ +.++.|.+||+. .. .+ ...+.+..+... ......++++++|++.++...++.|.+||.
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~-------------~~~~~~~~~~~~---~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPT-------------GKAEVFIDSTGI---KGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBS-------------SCCEEEEECTTS---SSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred EEECCCCEEEEEEcccccCCcc-------------cCceEEEECCCC---CCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 54 456899999973 11 10 011223333333 455778999999987777766788999987
Q ss_pred C
Q psy11529 240 Q 240 (244)
Q Consensus 240 ~ 240 (244)
+
T Consensus 259 ~ 259 (326)
T 2ghs_A 259 D 259 (326)
T ss_dssp T
T ss_pred C
Confidence 4
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.55 E-value=1.3e-13 Score=104.50 Aligned_cols=144 Identities=10% Similarity=0.003 Sum_probs=107.2
Q ss_pred ceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC---------ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEE
Q psy11529 57 KVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK---------WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISV 127 (244)
Q Consensus 57 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 127 (244)
.++.+++++...++++|+.+ .+.+|++ .... ...... ..... |+.++| ++++|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~--~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGEL--QLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEH--HHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEh--hHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence 68899999999999999887 4666983 2211 222222 23566 999999 88999998 8899999
Q ss_pred EEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC
Q psy11529 128 CYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS 207 (244)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (244)
||+++... ......+...+.++.+.+.. +++++.||.|.+||+ ..+.... +
T Consensus 111 ~dv~sl~~----~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl------------------~~~~~~~----~- 161 (388)
T 1xip_A 111 LDLEELSE----FRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDL------------------RTKSTKQ----L- 161 (388)
T ss_dssp EESSSTTC----EEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEET------------------TTCCEEE----E-
T ss_pred EEchhhhc----cCccceeecceeeEEecCCC--EEEEECCCCEEEEEc------------------cCCcccc----c-
Confidence 99988764 22223445567777776543 888899999999999 4444432 2
Q ss_pred CCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 208 SGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 208 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
...|++++|||+| ++.|..||++++|+.+.
T Consensus 162 --~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 162 --AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp --EESEEEEEECSSE--EEEEETTSCEEEEEEET
T ss_pred --cCCceEEEEcCCc--eEEEEcCCcEEEEcCCC
Confidence 5679999999999 67788999999997654
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.55 E-value=4.1e-11 Score=89.73 Aligned_cols=190 Identities=12% Similarity=0.015 Sum_probs=123.4
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc--CCCceEEEEeCCCCCeEEEEeCC----ccEEEE
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG--HDLKVTGIDWAPNTNRIVTCSAD----RNAYVW 82 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d----~~i~iw 82 (244)
...+.+++|+|+|+++++. . ..|.+|+..+ +....+..... ....++.++++|+|+++++...+ +...||
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-D-DGLFLRDTAT--GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-T-TEEEEEETTT--CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-C-CCEEEEECCC--CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence 4678999999999877765 3 4589999876 43332222211 12468899999999876654321 345666
Q ss_pred eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEee--cC-CCce-EEEeeecCCCCceeEEEecC
Q psy11529 83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFE--SE-NDWW-VAKHIKKPIKSTITCLDWHP 157 (244)
Q Consensus 83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~--~~-~~~~-~~~~~~~~~~~~v~~~~~~p 157 (244)
.++ +++... ..........++|+|+++.++.+. .++.|.+|+++ ++ .... ............+..+++++
T Consensus 165 ~~~--~g~~~~---~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~ 239 (326)
T 2ghs_A 165 HVA--KGKVTK---LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA 239 (326)
T ss_dssp EEE--TTEEEE---EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred EEe--CCcEEE---eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC
Confidence 642 343221 122334567899999998776654 56889999986 33 2100 11111222335678899999
Q ss_pred CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe-cCCCEEEEee
Q psy11529 158 NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS-KDGNKLCWTS 229 (244)
Q Consensus 158 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 229 (244)
+|++.++...++.|.+||. .++.+..+..+ ...+++++|+ ++++.|+.++
T Consensus 240 ~G~lwva~~~~~~v~~~d~-------------------~g~~~~~i~~~---~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 240 EGHIWNARWGEGAVDRYDT-------------------DGNHIARYEVP---GKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp TSCEEEEEETTTEEEEECT-------------------TCCEEEEEECS---CSBEEEEEEESTTSCEEEEEE
T ss_pred CCCEEEEEeCCCEEEEECC-------------------CCCEEEEEECC---CCCcEEEEEecCCCCEEEEEe
Confidence 9988777767788999985 35566666665 6679999998 8887665444
No 212
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.54 E-value=1.7e-12 Score=99.68 Aligned_cols=206 Identities=12% Similarity=0.022 Sum_probs=131.1
Q ss_pred CCCceEEEEEcCCCCeEEEec----------CCCeEEEeeeccCCCcceeeeeeccC-------CCceEEEEeCCCCCeE
Q psy11529 8 GINPVTTHAWNNTRQQLAFTP----------NNQEVHLYQYEKAANDWSQLDVLDGH-------DLKVTGIDWAPNTNRI 70 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~----------~d~~v~v~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l 70 (244)
...+ .++++|||++++++. .++.|.++|..+ . +.+..+.-. ......+.|+|||+++
T Consensus 118 G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t--~--~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~l 191 (426)
T 3c75_H 118 GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT--F--LPIADIELPDAPRFLVGTYQWMNALTPDNKNL 191 (426)
T ss_dssp CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--C--CEEEEEEETTCCCCCBSCCGGGSEECTTSSEE
T ss_pred CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC--C--cEEEEEECCCccccccCCCcceEEEcCCCCEE
Confidence 3455 899999999888775 367899999977 4 444444311 1234578999999999
Q ss_pred EEEeC--CccEEEEeeeCCCCCceeeEEEecc-----CcceEEE------------------------------------
Q psy11529 71 VTCSA--DRNAYVWTQNNDDKKWKPTLVLLRI-----NRAATCV------------------------------------ 107 (244)
Q Consensus 71 ~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~------------------------------------ 107 (244)
+.+.. ++.|.+.| ..+++....+...+. .+.-..+
T Consensus 192 yV~n~~~~~~VsVID--~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~ 269 (426)
T 3c75_H 192 LFYQFSPAPAVGVVD--LEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINH 269 (426)
T ss_dssp EEEECSSSCEEEEEE--TTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSC
T ss_pred EEEecCCCCeEEEEE--CCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeE
Confidence 98864 57899999 777765443332110 0000012
Q ss_pred -EECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeec-----C---CCCceeEEEecCCCCEEEEeeC----------C
Q psy11529 108 -KWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKK-----P---IKSTITCLDWHPNNHLLGCGST----------D 168 (244)
Q Consensus 108 -~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~---~~~~v~~~~~~p~~~~l~~~~~----------d 168 (244)
.|.+++..++..+..+.+.+.|............... . .......++++|+++.+++... .
T Consensus 270 ~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s 349 (426)
T 3c75_H 270 PAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAAS 349 (426)
T ss_dssp CEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCE
T ss_pred eeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCC
Confidence 2344444444445556666666654331000000000 0 0112223789999887666542 3
Q ss_pred CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEee-CCCcEEEEeCCCCC
Q psy11529 169 FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTS-HDGSINVRMSQQVL 243 (244)
Q Consensus 169 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~vwd~~~~~ 243 (244)
+.|.++|+ .+.+.+..+.. ......++|+|||+ ++++.. .++.|.++|+.+..
T Consensus 350 ~~VsVID~------------------~T~kvv~~I~v----g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 350 RFVVVLNA------------------ETGERINKIEL----GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEEEEEET------------------TTCCEEEEEEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEEC------------------CCCeEEEEEEC----CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 57999999 77888888876 45688999999999 888887 59999999998753
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.54 E-value=1.1e-11 Score=91.98 Aligned_cols=198 Identities=10% Similarity=-0.004 Sum_probs=125.0
Q ss_pred CCCceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 8 GINPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
+........|+|+|+ ++++...++.|..|+..+ + ...+..+...+..++++++|+++++...++.|.+|+ .
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-----~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~--~ 114 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-----T-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD--A 114 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-----C-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC--T
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-----C-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC--C
Confidence 345667899999998 566667788999998743 2 234444667789999999999766655567899999 5
Q ss_pred CCCCceeeEEEec--cCcceEEEEECCCCCeEEE----eeC-------------CCeEEEEEeecCCCceEEEeeecCCC
Q psy11529 87 DDKKWKPTLVLLR--INRAATCVKWSPLENKFAA----GSG-------------ARLISVCYFESENDWWVAKHIKKPIK 147 (244)
Q Consensus 87 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~ 147 (244)
. ++......... ....++.++++|+|+.+++ +.. .+.|..+|.++++. .... ..
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~----~~~~--~~ 187 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL----QRMA--DL 187 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC----EEEE--EE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE----EEEe--cC
Confidence 4 54322211111 1234678999999998775 332 23455555444443 1111 22
Q ss_pred CceeEEEecCCCCEEEEeeCC------CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecC
Q psy11529 148 STITCLDWHPNNHLLGCGSTD------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD 221 (244)
Q Consensus 148 ~~v~~~~~~p~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 221 (244)
.....++|+||++.|+.+... +.|.+|++....+ ...+..... . ......++++++
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-------------~~~~~~~~~--~---~~~pdgi~~d~~ 249 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-------------HDRRHFASV--P---DGLPDGFCVDRG 249 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-------------EEEEEEECC--S---SSCCCSEEECTT
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-------------cCCeEEEEC--C---CCCCCeEEECCC
Confidence 456789999999977777655 6899999842110 001111111 1 334567889999
Q ss_pred CCEEEEeeCCCcEEEEeCC
Q psy11529 222 GNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 222 ~~~l~~~~~dg~i~vwd~~ 240 (244)
|++.++. .+ .|.+|+.+
T Consensus 250 G~lwv~~-~~-gv~~~~~~ 266 (305)
T 3dr2_A 250 GWLWSSS-GT-GVCVFDSD 266 (305)
T ss_dssp SCEEECC-SS-EEEEECTT
T ss_pred CCEEEec-CC-cEEEECCC
Confidence 9855444 44 48888864
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=2.9e-11 Score=92.08 Aligned_cols=196 Identities=11% Similarity=-0.015 Sum_probs=127.7
Q ss_pred EEEEEcCCCCeEEEecC--CCeEEEeeeccCCCcceeeee-eccCCCceEEEEeCCCC-CeEEEEeCCccEEEEeeeCCC
Q psy11529 13 TTHAWNNTRQQLAFTPN--NQEVHLYQYEKAANDWSQLDV-LDGHDLKVTGIDWAPNT-NRIVTCSADRNAYVWTQNNDD 88 (244)
Q Consensus 13 ~~~~~~~~~~~l~~~~~--d~~v~v~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~ 88 (244)
..++|+|||++|+++.. ++.|.++| .+ + +.... +. ... ++.+.|++ +.+++.+.||.+.++| . +
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t--~--~~~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd--~-~ 195 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QG--G--SSDDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTD--H-A 195 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CC--C--CEEeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEE--C-C
Confidence 47899999999998864 57899999 77 4 44444 43 222 24455644 4556677899999999 6 6
Q ss_pred CCceeeEEE---eccCcc-eEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeec-----C---CCCceeEEEec
Q psy11529 89 KKWKPTLVL---LRINRA-ATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKK-----P---IKSTITCLDWH 156 (244)
Q Consensus 89 ~~~~~~~~~---~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~---~~~~v~~~~~~ 156 (244)
++....... ...... .....+.+++..++..+..+.+.+.|+.............. . .......+.++
T Consensus 196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s 275 (373)
T 2mad_H 196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL 275 (373)
T ss_pred CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC
Confidence 653322110 011111 22345667666655555778899988876532111100000 0 11234457899
Q ss_pred CCCCEEEEeeC----------CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EE
Q psy11529 157 PNNHLLGCGST----------DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KL 225 (244)
Q Consensus 157 p~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 225 (244)
|+++.++++.. .+.|.++|+ .+.+.+..+.. ......++|+|||+ ++
T Consensus 276 ~d~~~lyV~~~~~~~~~~~~~~~~V~VID~------------------~t~~vv~~i~~----g~~p~~i~~s~Dg~~~l 333 (373)
T 2mad_H 276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTG------------------LVGQTSSQISL----GHDVDAISVAQDGGPDL 333 (373)
T ss_pred CCCCEEEEEeccCCcccccCCCCeEEEEEC------------------CCCEEEEEEEC----CCCcCeEEECCCCCeEE
Confidence 99987777543 357999998 67788888865 55689999999999 77
Q ss_pred EEee-CCCcEEEEeCCCC
Q psy11529 226 CWTS-HDGSINVRMSQQV 242 (244)
Q Consensus 226 ~~~~-~dg~i~vwd~~~~ 242 (244)
+++. .++.|.++|+.+.
T Consensus 334 ~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 334 YALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEEcCCCCeEEEEECCCC
Confidence 7776 5899999999875
No 215
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.50 E-value=1.1e-11 Score=93.40 Aligned_cols=221 Identities=10% Similarity=0.005 Sum_probs=130.3
Q ss_pred eEEeCCCceEEEEEcCCCCeEEEec--CCCeEEEeeeccCCCcceee----eeeccCCCceEEEEeCCCCCeEEEEeC--
Q psy11529 4 VYSFGINPVTTHAWNNTRQQLAFTP--NNQEVHLYQYEKAANDWSQL----DVLDGHDLKVTGIDWAPNTNRIVTCSA-- 75 (244)
Q Consensus 4 ~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~v~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 75 (244)
+.++. .....++++|+|+.+++.. .++.++||.+.+ +..... .....+-..+.+++++++++++++-..
T Consensus 12 v~~~~-~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~--g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~ 88 (343)
T 2qe8_A 12 VAELS-LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ--DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ 88 (343)
T ss_dssp EEEES-SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET--TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH
T ss_pred EEEcC-CCcceEEECCCCCEEEEeCCCCCCceEEEEECC--CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC
Confidence 44444 6789999999999988853 234355665543 311111 111234567899999999876665433
Q ss_pred ---CccEEEEeeeCCCCCceeeEEEec----cCcceEEEEECCCCCeE-EEee---CCCeEEEEEeecCCCceEEEe--e
Q psy11529 76 ---DRNAYVWTQNNDDKKWKPTLVLLR----INRAATCVKWSPLENKF-AAGS---GARLISVCYFESENDWWVAKH--I 142 (244)
Q Consensus 76 ---d~~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l-~~~~---~d~~i~i~d~~~~~~~~~~~~--~ 142 (244)
++.|.+|| ..+++....+.+.. ....+..++++|++..+ ++-. .++.|.+||+.+++....... .
T Consensus 89 ~~~~~~i~~~d--~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 89 SKSVPKLVAWD--TLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp HTSCCEEEEEE--TTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred cCCCCeEEEEE--CCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 57899999 77776544443321 12356899999865454 4443 578899999876643111000 0
Q ss_pred e---------cC--------------CCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccce
Q psy11529 143 K---------KP--------------IKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNC 199 (244)
Q Consensus 143 ~---------~~--------------~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 199 (244)
. .+ ....+..++|+|+|+.|+++...+. ++|.+......... . .. ......
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~---~-~~-~~~~~~ 240 (343)
T 2qe8_A 167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQ---L-TD-AELGSK 240 (343)
T ss_dssp TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTT---C-CH-HHHHTT
T ss_pred ccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCC---C-Ch-hhhhcc
Confidence 0 00 0123688999999998888877663 44544321111000 0 00 000000
Q ss_pred eEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529 200 LVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS 239 (244)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 239 (244)
+... ++ ......++++++|.++++...++.|.+||.
T Consensus 241 ~~~~-g~---~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 241 IERY-SE---KPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp CEEE-EE---CCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred eEec-cc---CCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 1111 22 334567899999999988888999999997
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.46 E-value=4.6e-11 Score=92.13 Aligned_cols=199 Identities=7% Similarity=0.018 Sum_probs=125.3
Q ss_pred EEEcCCCCeEEEecCCC--eEEEeeeccCCCcceeeeee---cc-CCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529 15 HAWNNTRQQLAFTPNNQ--EVHLYQYEKAANDWSQLDVL---DG-HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD 88 (244)
Q Consensus 15 ~~~~~~~~~l~~~~~d~--~v~v~~~~~~~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 88 (244)
++|+|+++.|+++..++ .|.+++... + .....+ .. ....+.+++++|++..|+.+..++.|+.|| ..+
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~--~--~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d--~~~ 249 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKAS--G--WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFN--VKT 249 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGG--T--TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEE--TTT
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCC--C--ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEE--CCC
Confidence 88999999888887655 788888765 2 112222 12 446678899999555555566788899999 666
Q ss_pred CCceeeEE--EeccCcce-E-EEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeee--cC---------CCCceeE
Q psy11529 89 KKWKPTLV--LLRINRAA-T-CVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIK--KP---------IKSTITC 152 (244)
Q Consensus 89 ~~~~~~~~--~~~~~~~v-~-~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~---------~~~~v~~ 152 (244)
+....... ..+..... . .++|+|+ +.++++-..++.|+.|+.+.... ...-.. .+ .-.....
T Consensus 250 ~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~--~~~g~~~~~g~~dg~~~~~~~~~P~g 327 (409)
T 3hrp_A 250 QEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE--WFCGSATQKTVQDGLREEALFAQPNG 327 (409)
T ss_dssp CCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE--EEEECTTCCSCBCEEGGGCBCSSEEE
T ss_pred CCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE--EEEeCCCCCCcCCCcccccEeCCCeE
Confidence 54221100 11111222 3 9999996 55555555678888887654311 110000 00 0134789
Q ss_pred EEecCCCCEEEEee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC------------CCCCCCeEEEEEe
Q psy11529 153 LDWHPNNHLLGCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS------------SSGGGWIHSVAFS 219 (244)
Q Consensus 153 ~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~v~~~~~s 219 (244)
++++|+|+++++-. .+++|+.|++.. +. +..+.++ ...-.....++++
T Consensus 328 ia~d~dG~lyvad~~~~~~I~~~~~~~------------------G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd 388 (409)
T 3hrp_A 328 MTVDEDGNFYIVDGFKGYCLRKLDILD------------------GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYD 388 (409)
T ss_dssp EEECTTCCEEEEETTTTCEEEEEETTT------------------TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEEC
T ss_pred EEEeCCCCEEEEeCCCCCEEEEEECCC------------------CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEc
Confidence 99999999777777 788999999622 22 1111111 0002457899999
Q ss_pred cCCCEEEEeeCCCcEEEEeCC
Q psy11529 220 KDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 220 ~~~~~l~~~~~dg~i~vwd~~ 240 (244)
++|.++++-..++.|+.++++
T Consensus 389 ~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 389 GEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp SSSEEEEEESTTCEEEEEEEC
T ss_pred CCCCEEEEECCCCeEEEEEeC
Confidence 999888888888899988763
No 217
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.42 E-value=1.5e-11 Score=93.02 Aligned_cols=200 Identities=10% Similarity=-0.018 Sum_probs=120.7
Q ss_pred CCCceEEEEEcCCCCeEEEec----------CCCeEEEeeeccCCCcceeeeeeccC-------CCceEEEEeCCCCCeE
Q psy11529 8 GINPVTTHAWNNTRQQLAFTP----------NNQEVHLYQYEKAANDWSQLDVLDGH-------DLKVTGIDWAPNTNRI 70 (244)
Q Consensus 8 ~~~~v~~~~~~~~~~~l~~~~----------~d~~v~v~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l 70 (244)
...+ .+.++||+++++++. .++.|.+||+.+ . +.+.++.-. ......++++|||+++
T Consensus 65 G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T--~--~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~l 138 (368)
T 1mda_H 65 AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT--F--LPIADIELPDAPRFSVGPRVHIIGNCASSACL 138 (368)
T ss_dssp CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT--C--CEEEEEEETTSCSCCBSCCTTSEEECTTSSCE
T ss_pred CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC--C--CEEEEEECCCccccccCCCcceEEEcCCCCEE
Confidence 3455 799999999888875 368899999987 4 556665432 1234579999999999
Q ss_pred EEEeC--CccEEE--EeeeCCCCCceeeEEEecc-----CcceEEEEE--------------------------------
Q psy11529 71 VTCSA--DRNAYV--WTQNNDDKKWKPTLVLLRI-----NRAATCVKW-------------------------------- 109 (244)
Q Consensus 71 ~~~~~--d~~i~i--wd~~~~~~~~~~~~~~~~~-----~~~v~~~~~-------------------------------- 109 (244)
+.+.. +..+.+ +| ..+ ...+...+. .+.-.-+++
T Consensus 139 yVan~~~~~~v~V~~iD--~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg 213 (368)
T 1mda_H 139 LFFLFGSSAAAGLSVPG--ASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS 213 (368)
T ss_dssp EEEECSSSCEEEEEETT--TEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBC
T ss_pred EEEccCCCCeEEEEEEc--hhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCC
Confidence 98864 467888 88 433 111110000 000000111
Q ss_pred -----CCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC------C---CCceeEEEecCCCCEEEEeeC--------
Q psy11529 110 -----SPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP------I---KSTITCLDWHPNNHLLGCGST-------- 167 (244)
Q Consensus 110 -----~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------~---~~~v~~~~~~p~~~~l~~~~~-------- 167 (244)
.+++..++..+. +.+.+.|....... ........ . ......+.++|+++.++++..
T Consensus 214 ~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~-v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~ 291 (368)
T 1mda_H 214 SQAAQANYPGMLVWAVA-SSILQGDIPAAGAT-MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA 291 (368)
T ss_dssp SCCEEETTTTEEEECBS-SCCEEEECCSSCCE-EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred CCccccccCCEEEEEcC-CEEEEEECCCCcce-EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccc
Confidence 222233333333 55666665443220 00000000 0 011222789999987776543
Q ss_pred -CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEee-CCCcEEEEeCCCC
Q psy11529 168 -DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTS-HDGSINVRMSQQV 242 (244)
Q Consensus 168 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~vwd~~~~ 242 (244)
++.+.++|+ .+.+.+..+.. ......++|+|||+ ++++.. .++.|.++|+.+.
T Consensus 292 ~~~~~~ViD~------------------~t~~vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 292 AAENTSSVTA------------------SVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp CEEEEEEEES------------------SSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred cCCCEEEEEC------------------CCCeEEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence 235669999 67777777766 44688999999998 556666 5999999999875
No 218
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.42 E-value=2.4e-10 Score=87.39 Aligned_cols=194 Identities=14% Similarity=0.095 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCeEEEecCC------CeEEEeeeccCCCcceeeeeecc--CC-CceEEEEeCCCCCeEEEEe--------
Q psy11529 12 VTTHAWNNTRQQLAFTPNN------QEVHLYQYEKAANDWSQLDVLDG--HD-LKVTGIDWAPNTNRIVTCS-------- 74 (244)
Q Consensus 12 v~~~~~~~~~~~l~~~~~d------~~v~v~~~~~~~~~~~~~~~~~~--~~-~~v~~~~~~~~~~~l~~~~-------- 74 (244)
-..+..+|+| .++++..+ +.|.++|..+ . +.+.++.. .. ..-..+.|+|+++.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T--~--~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~ 214 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS--F--EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIE 214 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT--C--CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHT
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC--C--eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccc
Confidence 3456788999 66665444 7899999876 3 55555542 22 2233578899999888874
Q ss_pred -----------CCccEEEEeeeCCCCCceeeEEEeccCcceEEEEE--CCCCCeEEEee------CCCeEEEEEeecCCC
Q psy11529 75 -----------ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKW--SPLENKFAAGS------GARLISVCYFESEND 135 (244)
Q Consensus 75 -----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~------~d~~i~i~d~~~~~~ 135 (244)
...+|.+|| +.+++....+...........+.| +|+++++++++ .+++|.+|..+.+.
T Consensus 215 ~g~~~~~~~~~~~d~V~v~D--~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~- 291 (462)
T 2ece_A 215 DGLKLEHLKDRYGNRIHFWD--LRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK- 291 (462)
T ss_dssp TCCCTTTHHHHSCCEEEEEE--TTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-
T ss_pred cccchhhhhhccCCEEEEEE--CCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-
Confidence 368999999 777654444433212234556656 99999977766 56788888877532
Q ss_pred ceEEEeee--cC----------------CCCceeEEEecCCCCEEEEeeC-CCeEEEEEeeecccccCCCCCCCCccccc
Q psy11529 136 WWVAKHIK--KP----------------IKSTITCLDWHPNNHLLGCGST-DFKVRVFSAYIKDIESAPQSTNWGSKSTL 196 (244)
Q Consensus 136 ~~~~~~~~--~~----------------~~~~v~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 196 (244)
+...... .. .......+.++|||++|+++.. .+.|.+||+... ..
T Consensus 292 -~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~---------------~~ 355 (462)
T 2ece_A 292 -WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP---------------FK 355 (462)
T ss_dssp -EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST---------------TS
T ss_pred -eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC---------------CC
Confidence 2111110 00 0245788999999998887765 679999998311 11
Q ss_pred cceeEEecCC-----------CCCCCCeEEEEEecCCCEEEEee
Q psy11529 197 GNCLVELNNS-----------SSGGGWIHSVAFSKDGNKLCWTS 229 (244)
Q Consensus 197 ~~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~l~~~~ 229 (244)
.+.+..+... ......-..++++|||++|+++.
T Consensus 356 ~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 356 PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 2333333321 00012357899999999988887
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.39 E-value=8.3e-11 Score=88.70 Aligned_cols=199 Identities=8% Similarity=-0.020 Sum_probs=123.1
Q ss_pred CCceEEEEEcCCCCeEEEecC-----CCeEEEeeeccCCCcceeeeeecc------CCCceEEEEeCCCCCeE-EEEe--
Q psy11529 9 INPVTTHAWNNTRQQLAFTPN-----NQEVHLYQYEKAANDWSQLDVLDG------HDLKVTGIDWAPNTNRI-VTCS-- 74 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~-----d~~v~v~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l-~~~~-- 74 (244)
...+.+++++++++++++-.. ++.|.+||+.+ + +.+..+.. +...+..+++++++..+ ++-.
T Consensus 66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t--g--~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN--N--QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT--T--EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC--C--eEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc
Confidence 357899999999987765433 57899999876 4 33443332 22456899999865444 4444
Q ss_pred -CCccEEEEeeeCCCCCceeeEE-------------Eec--------------cCcceEEEEECCCCCeEEEeeCCCeEE
Q psy11529 75 -ADRNAYVWTQNNDDKKWKPTLV-------------LLR--------------INRAATCVKWSPLENKFAAGSGARLIS 126 (244)
Q Consensus 75 -~d~~i~iwd~~~~~~~~~~~~~-------------~~~--------------~~~~v~~~~~~~~~~~l~~~~~d~~i~ 126 (244)
.++.|.+|| ..+++...... ..+ ....+..++|+|+++.|+++...+. +
T Consensus 142 ~~~~~i~v~d--~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~ 218 (343)
T 2qe8_A 142 DDKAALIRVD--LQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-S 218 (343)
T ss_dssp GGGCEEEEEE--TTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-E
T ss_pred CCCCeEEEEE--CCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-e
Confidence 578999999 66554321110 000 0123688999999998888876653 4
Q ss_pred EEEeecC--C--Cce---EE-EeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccc
Q psy11529 127 VCYFESE--N--DWW---VA-KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGN 198 (244)
Q Consensus 127 i~d~~~~--~--~~~---~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 198 (244)
+|.++.. . ... .. .....++......++++++|+++++...++.|.+||. ..++
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~------------------~~G~ 280 (343)
T 2qe8_A 219 MYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS------------------ADRA 280 (343)
T ss_dssp EEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET------------------TTTE
T ss_pred EEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC------------------CCCC
Confidence 4544321 0 000 00 0001112235667999999999998888999999996 2343
Q ss_pred eeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcE
Q psy11529 199 CLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSI 234 (244)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 234 (244)
......... .....+++|.++++++++.+..+.+
T Consensus 281 ~~~~~~~~~--~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 281 YKLLVTDEK--LSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp EEEEEECGG--GSCEEEEEECTTSCEEEEECCGGGS
T ss_pred EEEEEECCc--eecCCeeEECCCCcEEEEeCccccc
Confidence 322222110 3568899999999888777644433
No 220
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.36 E-value=1.5e-10 Score=87.55 Aligned_cols=198 Identities=12% Similarity=-0.005 Sum_probs=126.5
Q ss_pred EEEEEcCCCCeEEEecC--CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC-C
Q psy11529 13 TTHAWNNTRQQLAFTPN--NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD-K 89 (244)
Q Consensus 13 ~~~~~~~~~~~l~~~~~--d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~ 89 (244)
..++|+|||++++++.. ++.|.++|+.+ . +.+.++.- .+ . ...+....+.+++.+.||++.+.+ +.+ +
T Consensus 140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t--~--~vv~tI~v-~g-~-~~~~P~g~~~~~~~~~DG~~~~v~--~~~~g 210 (386)
T 3sjl_D 140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEG--K--AFKRMLDV-PD-C-YHIFPTAPDTFFMHCRDGSLAKVA--FGTEG 210 (386)
T ss_dssp GGEEECTTSSEEEEEECSSSCEEEEEETTT--T--EEEEEEEC-CS-E-EEEEEEETTEEEEEETTSCEEEEE--CCSSS
T ss_pred ceEEEcCCCCEEEEEEcCCCCeEEEEECCC--C--cEEEEEEC-CC-c-ceeecCCCceeEEECCCCCEEEEE--CCCCC
Confidence 35899999999888753 68999999987 5 56666642 12 1 222322455677788899999888 554 4
Q ss_pred CceeeEE-Ee-ccCcce-EEEEEC-CCCCeEEEeeCCCeEEEEEeecCCCceEEEee-ec-------CCCCceeEEEecC
Q psy11529 90 KWKPTLV-LL-RINRAA-TCVKWS-PLENKFAAGSGARLISVCYFESENDWWVAKHI-KK-------PIKSTITCLDWHP 157 (244)
Q Consensus 90 ~~~~~~~-~~-~~~~~v-~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~-------~~~~~v~~~~~~p 157 (244)
+...... .. .....+ ....|. ++|++++ .+.++.+.+.|............. .. -.......++++|
T Consensus 211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~ 289 (386)
T 3sjl_D 211 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 289 (386)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred eEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence 4321110 00 001122 124553 6675544 556899999998766531110110 00 0123344577899
Q ss_pred CCCEEEEeeC----------CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEE
Q psy11529 158 NNHLLGCGST----------DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLC 226 (244)
Q Consensus 158 ~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 226 (244)
+++.++.... ..+|.++|+ .+.+.+..+.. ...+.++++++|++ +|+
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~------------------~t~kv~~~i~v----g~~~~~lavs~D~~~~ly 347 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDA------------------KTGERLAKFEM----GHEIDSINVSQDEKPLLY 347 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEET------------------TTCCEEEEEEE----EEEECEEEECSSSSCEEE
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEEC------------------CCCeEEEEEEC----CCCcceEEECCCCCeEEE
Confidence 9987777543 247999998 77888888876 56788999999997 666
Q ss_pred Ee-eCCCcEEEEeCCCC
Q psy11529 227 WT-SHDGSINVRMSQQV 242 (244)
Q Consensus 227 ~~-~~dg~i~vwd~~~~ 242 (244)
+. ..++.|.++|..+.
T Consensus 348 ~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 348 ALSTGDKTLYIHDAESG 364 (386)
T ss_dssp EEETTTTEEEEEETTTC
T ss_pred EEcCCCCeEEEEECCCC
Confidence 64 45899999999865
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.36 E-value=8.9e-11 Score=96.61 Aligned_cols=199 Identities=11% Similarity=0.054 Sum_probs=121.4
Q ss_pred EEEEEcCCCCeEEEecCCC-------------eEEEeeeccCCCcceeeeeecc-CCCceEEEEeCCCCCeEEEEeC---
Q psy11529 13 TTHAWNNTRQQLAFTPNNQ-------------EVHLYQYEKAANDWSQLDVLDG-HDLKVTGIDWAPNTNRIVTCSA--- 75 (244)
Q Consensus 13 ~~~~~~~~~~~l~~~~~d~-------------~v~v~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--- 75 (244)
..++|+ ||+.|+.++.+. .|++|++.++..+-.++..... |.....++.|+|||++|+....
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 467899 999999887763 4999998662211123333333 4456788999999998865432
Q ss_pred -CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-C---CeEEEEEeecCCCceEEEeeecCCCCce
Q psy11529 76 -DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-A---RLISVCYFESENDWWVAKHIKKPIKSTI 150 (244)
Q Consensus 76 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v 150 (244)
.+.|.++| +.++.... ..+..+....... |++++..|+..+. + +.|..+++....... .....++...+
T Consensus 257 ~~~~i~~~d--~~~~~~~~-~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~ 330 (693)
T 3iuj_A 257 SGNRLYVKD--LSQENAPL-LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH--WRDLIPERQQV 330 (693)
T ss_dssp SCCEEEEEE--TTSTTCCC-EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG--CEEEECCCSSC
T ss_pred CCcEEEEEE--CCCCCCce-EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc--cEEEecCCCCE
Confidence 35889999 65553211 2223344444444 6666666655443 2 578888877654200 01223343444
Q ss_pred eEEEecCCCCEEEEeeC-CC--eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEE
Q psy11529 151 TCLDWHPNNHLLGCGST-DF--KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCW 227 (244)
Q Consensus 151 ~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 227 (244)
. .|+++++.|+.... ++ .|++||+ . +.....+.... ...+..+.+++++..|+.
T Consensus 331 ~--~~s~~g~~lv~~~~~~g~~~l~~~d~------------------~-g~~~~~l~~p~--~~~~~~~~~~~d~~~l~~ 387 (693)
T 3iuj_A 331 L--TVHSGSGYLFAEYMVDATARVEQFDY------------------E-GKRVREVALPG--LGSVSGFNGKHDDPALYF 387 (693)
T ss_dssp E--EEEEETTEEEEEEEETTEEEEEEECT------------------T-SCEEEEECCSS--SSEEEECCCCTTCSCEEE
T ss_pred E--EEEEECCEEEEEEEECCeeEEEEEEC------------------C-CCeeEEeecCC--CceEEeeecCCCCCEEEE
Confidence 4 88999987776654 44 6788876 2 33344443321 456778888888886665
Q ss_pred eeCC----CcEEEEeCCC
Q psy11529 228 TSHD----GSINVRMSQQ 241 (244)
Q Consensus 228 ~~~d----g~i~vwd~~~ 241 (244)
...+ +.+..||+.+
T Consensus 388 ~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 388 GFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EEECSSSCCEEEEECTTT
T ss_pred EecCCCCCCEEEEEECCC
Confidence 5444 7899998764
No 222
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.35 E-value=5.2e-10 Score=80.38 Aligned_cols=201 Identities=6% Similarity=-0.065 Sum_probs=126.4
Q ss_pred ceEEEEEcCCCCeEEEecC--CCeEEEeeeccCCCcceeeeeecc-CCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeC
Q psy11529 11 PVTTHAWNNTRQQLAFTPN--NQEVHLYQYEKAANDWSQLDVLDG-HDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNN 86 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~--d~~v~v~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 86 (244)
....++|+|++.++++.+. ++.|+++|+.+ + +.+..+.- .......+++. +..|+.+ -.++.+.++| .
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t--g--~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD--~ 93 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQT--G--KVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYD--R 93 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTT--C--CEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEE--T
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCC--C--CEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEE--C
Confidence 3579999998765555443 57999999987 5 44444431 11222355555 4455444 4588999999 7
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCC-CCceeEEEecCCCCEEEEe
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPI-KSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~ 165 (244)
.+.+....+... ... ...++++++.++++..++.+.++|..+.+..........+. -..++.+.|. +|...+..
T Consensus 94 ~t~~v~~~i~~g--~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~ 168 (266)
T 2iwa_A 94 RTLSNIKNFTHQ--MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANI 168 (266)
T ss_dssp TTTEEEEEEECC--SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred CCCcEEEEEECC--CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEec
Confidence 777655444322 122 23355578888887788999999887766421111111111 1246678888 67555555
Q ss_pred eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC----------CCCCCeEEEEEecCCC-EEEEeeCCCcE
Q psy11529 166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS----------SGGGWIHSVAFSKDGN-KLCWTSHDGSI 234 (244)
Q Consensus 166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~-~l~~~~~dg~i 234 (244)
..++.|.+.|. .+++.+..+.... ........++|+|+++ +++++...+++
T Consensus 169 ~~~~~V~vID~------------------~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v 230 (266)
T 2iwa_A 169 WQTDCIARISA------------------KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL 230 (266)
T ss_dssp TTSSEEEEEET------------------TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred CCCCeEEEEEC------------------CCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence 56789999999 6677766665310 0013568999999987 55566678888
Q ss_pred EEEeCCCC
Q psy11529 235 NVRMSQQV 242 (244)
Q Consensus 235 ~vwd~~~~ 242 (244)
.+.++...
T Consensus 231 ~~i~l~~~ 238 (266)
T 2iwa_A 231 FEIKLHLV 238 (266)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecc
Confidence 88887643
No 223
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.35 E-value=5.4e-10 Score=84.55 Aligned_cols=195 Identities=12% Similarity=0.024 Sum_probs=123.8
Q ss_pred EEEEcCCCCeEEEecC-----CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe----------CCcc
Q psy11529 14 THAWNNTRQQLAFTPN-----NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS----------ADRN 78 (244)
Q Consensus 14 ~~~~~~~~~~l~~~~~-----d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~ 78 (244)
.....|+++.+++... ++.|.++|..+ . +.+..+.....+ . ++++|+|++++.+. .++.
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t--~--~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~ 110 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEA--G--RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDY 110 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTT--T--EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCC--C--eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCE
Confidence 3456789998887754 57999999877 4 666777654555 4 99999999888775 3678
Q ss_pred EEEEeeeCCCCCceeeEEEec-----cCcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCcee
Q psy11529 79 AYVWTQNNDDKKWKPTLVLLR-----INRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTIT 151 (244)
Q Consensus 79 i~iwd~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 151 (244)
|.+|| ..+.+....+.... .......++|+|||++++++.. ++.|.++|+.+.+. ......+. +
T Consensus 111 VsviD--~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v---v~tI~v~g---~- 181 (386)
T 3sjl_D 111 VEVFD--PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF---KRMLDVPD---C- 181 (386)
T ss_dssp EEEEC--TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE---EEEEECCS---E-
T ss_pred EEEEE--CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE---EEEEECCC---c-
Confidence 99999 78887655554322 1125668999999999998864 68999999988864 22222221 1
Q ss_pred EEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC-CCCCCCeE-EEEEe-cCCCEEEEe
Q psy11529 152 CLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS-SSGGGWIH-SVAFS-KDGNKLCWT 228 (244)
Q Consensus 152 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~-~~~~s-~~~~~l~~~ 228 (244)
...+....+.+++.+.||++.+.++... ++........ .....++. ...|. ++|++++ .
T Consensus 182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~-----------------g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-v 243 (386)
T 3sjl_D 182 YHIFPTAPDTFFMHCRDGSLAKVAFGTE-----------------GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-P 243 (386)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEECCSS-----------------SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-E
T ss_pred ceeecCCCceeEEECCCCCEEEEECCCC-----------------CeEEEeecceeccccccccccceeEcCCCcEEE-E
Confidence 1222223356667777888888887421 1111100000 00012222 24664 6786555 4
Q ss_pred eCCCcEEEEeCCC
Q psy11529 229 SHDGSINVRMSQQ 241 (244)
Q Consensus 229 ~~dg~i~vwd~~~ 241 (244)
+.+|.|.+.|+..
T Consensus 244 s~~g~V~v~d~~~ 256 (386)
T 3sjl_D 244 TYTGKIHQIDLSS 256 (386)
T ss_dssp BTTSEEEEEECTT
T ss_pred eCCCEEEEEECCC
Confidence 5588999999854
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.34 E-value=2.2e-13 Score=103.69 Aligned_cols=181 Identities=12% Similarity=0.037 Sum_probs=95.2
Q ss_pred CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec
Q psy11529 20 TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR 99 (244)
Q Consensus 20 ~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 99 (244)
++..+++++.|+.|+.||..+ + +.+..+.. +.+.+..+..++..+++++.|+.++.|| ..+++........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~t--G--~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d--~~tG~~~w~~~~~- 78 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRT--G--SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLG--SKNNEGLTKLPFT- 78 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTT--C--CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-------CCSEECSCC-
T ss_pred eCCEEEEEcCCCEEEEEECCC--C--CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEE--CCCCceeeeeecc-
Confidence 577888999999999999877 5 55555554 4454544556777888888999999999 7777643222111
Q ss_pred cCcceE-EEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeee
Q psy11529 100 INRAAT-CVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYI 178 (244)
Q Consensus 100 ~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~ 178 (244)
....+. ...+. .+..+++++.++.++.||.++++..|.... + . ...++|++..+++++.++.|+.||.
T Consensus 79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~----~-~---~~~~~p~~~~v~~~~~dg~v~a~d~-- 147 (369)
T 2hz6_A 79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS----A-F---ADSLSPSTSLLYLGRTEYTITMYDT-- 147 (369)
T ss_dssp HHHHHTTCSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCS--
T ss_pred CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC----C-C---cccccccCCEEEEEecCCEEEEEEC--
Confidence 011110 11111 345678888899999999998876433221 1 1 2345678888999999999999998
Q ss_pred cccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCC---CEEEEeeCCCcEEEEeCCC
Q psy11529 179 KDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDG---NKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~ 241 (244)
.+++.+..+..+ . ....+++++. ..+++++.||.|..||.++
T Consensus 148 ----------------~tG~~~W~~~~~---~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 148 ----------------KTRELRWNATYF---D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp ----------------SSSSCCCEEEEE---E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred ----------------CCCCEEEeEecc---c--ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 445444333221 1 1122233332 4566778899999999865
No 225
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.34 E-value=9.4e-10 Score=84.13 Aligned_cols=211 Identities=7% Similarity=-0.022 Sum_probs=125.7
Q ss_pred CCCCeEEE-ecCCCeEEEeeeccCCCcceeeeeec------c-CCCceEEEEeCCCCCeEEEEeCC------ccEEEEee
Q psy11529 19 NTRQQLAF-TPNNQEVHLYQYEKAANDWSQLDVLD------G-HDLKVTGIDWAPNTNRIVTCSAD------RNAYVWTQ 84 (244)
Q Consensus 19 ~~~~~l~~-~~~d~~v~v~~~~~~~~~~~~~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~ 84 (244)
+++++|++ +..++.|.|+|+...-..++...+++ . ....-..+..+|+| .++++..+ +.+.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD- 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD- 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC-
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE-
Confidence 77877655 55678999999864213345555552 1 11244567889999 66666555 7899999
Q ss_pred eCCCCCceeeEEEeccC-cceEEEEECCCCCeEEEee-------------------CCCeEEEEEeecCCCceEEEeeec
Q psy11529 85 NNDDKKWKPTLVLLRIN-RAATCVKWSPLENKFAAGS-------------------GARLISVCYFESENDWWVAKHIKK 144 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~~~ 144 (244)
.++.+.+......... .....+-|+|+++.++++. ...+|.+||+.+.+. ......
T Consensus 171 -~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~---~~tI~v 246 (462)
T 2ece_A 171 -HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR---IHSLTL 246 (462)
T ss_dssp -TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE---EEEEES
T ss_pred -CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE---eeEEec
Confidence 7877754444322222 2245688899999888874 368999999997643 223322
Q ss_pred C-CCCceeEEEe--cCCCCEEEEee------CCCeEEEEEeeecccccCCCCCCCCccccccceeEEec---CC-CCCCC
Q psy11529 145 P-IKSTITCLDW--HPNNHLLGCGS------TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN---NS-SSGGG 211 (244)
Q Consensus 145 ~-~~~~v~~~~~--~p~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~ 211 (244)
+ .......+.| +|+++++++++ .+++|.+|.............. . ...+....+. .. .....
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId-i----~~~~v~~~lp~~~~~f~~~~~ 321 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE-I----PAEPLEGNLPEILKPFKAVPP 321 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE-E----CCEECCSSCCGGGGGGTEECC
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe-C----CCccccccccccccccccCCC
Confidence 2 2234445545 99999887776 4568887776321110000000 0 0000000000 00 00013
Q ss_pred CeEEEEEecCCCEEEEeeC-CCcEEEEeCC
Q psy11529 212 WIHSVAFSKDGNKLCWTSH-DGSINVRMSQ 240 (244)
Q Consensus 212 ~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~ 240 (244)
....+.+||||++|+++.. .+.|.+||+.
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 4678999999999887764 6899999985
No 226
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.25 E-value=9.9e-08 Score=69.17 Aligned_cols=197 Identities=9% Similarity=-0.030 Sum_probs=118.4
Q ss_pred CceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCC
Q psy11529 10 NPVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNND 87 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~ 87 (244)
..+..++|++++..|..+ ...+.|.+++..+ . .....+.........+++++++..|+.+ ...+.|.+++ ..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g--~--~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~--~~ 109 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHG--G--EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK--MD 109 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSS--C--CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE--TT
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCC--C--CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEE--cC
Confidence 345789999976655544 4578999999876 3 1222222223467899999976655544 4567899999 54
Q ss_pred CCCceeeEEEeccCcceEEEEECCCCCeEEEeeC---CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529 88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG---ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC 164 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 164 (244)
... .... ..........++++|++..|+.+.. .+.|..++++.... .............++++|++..|+.
T Consensus 110 g~~-~~~~-~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~----~~~~~~~~~~P~gia~d~~~~~lyv 183 (267)
T 1npe_A 110 GTQ-RRVL-FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----RILAQDNLGLPNGLTFDAFSSQLCW 183 (267)
T ss_dssp SCS-CEEE-ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----EEEECTTCSCEEEEEEETTTTEEEE
T ss_pred CCC-EEEE-EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc----EEEEECCCCCCcEEEEcCCCCEEEE
Confidence 332 1122 1222256789999997666665554 36788877765432 1111122346789999998766555
Q ss_pred ee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 165 GS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 165 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
+. ..+.|.++|+.. ......+.. ......++.. .+.++++....+.|.++|..+
T Consensus 184 ~d~~~~~I~~~~~~g------------------~~~~~~~~~----~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 184 VDAGTHRAECLNPAQ------------------PGRRKVLEG----LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp EETTTTEEEEEETTE------------------EEEEEEEEC----CCSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred EECCCCEEEEEecCC------------------CceEEEecC----CCCceEEEEe-CCEEEEEECCCCeEEEEeCCC
Confidence 44 567899999731 122222222 3334566654 333444444567899988764
No 227
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.23 E-value=3.2e-09 Score=83.92 Aligned_cols=198 Identities=12% Similarity=-0.017 Sum_probs=125.3
Q ss_pred CCCeEEEec-CCCeEEEeeeccCCCcceeee--eeccCCCceEEEEe-C-CCCCeEEEEe------------------CC
Q psy11529 20 TRQQLAFTP-NNQEVHLYQYEKAANDWSQLD--VLDGHDLKVTGIDW-A-PNTNRIVTCS------------------AD 76 (244)
Q Consensus 20 ~~~~l~~~~-~d~~v~v~~~~~~~~~~~~~~--~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~d 76 (244)
||+++.+.. .++.|.+.|+.. . +... .+. .......+++ + |++++++.++ .+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t--~--~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~ 174 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDV--M--KCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 174 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTT--T--EEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred CCCEEEEEcCCCCEEEEEECCC--c--eEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence 788776654 466899999987 4 4444 443 2345778887 5 8999988874 24
Q ss_pred ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC---------------------------------
Q psy11529 77 RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR--------------------------------- 123 (244)
Q Consensus 77 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------------------------------- 123 (244)
+.+.+.| ..+.+........ +....++++|+|+++++.+.+.
T Consensus 175 ~~vtvID--~~t~~v~~qI~Vg---g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 175 NVFTAVD--ADKWEVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp EEEEEEE--TTTTEEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred ceEEEEE--CCCCeEEEEEEeC---CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 6788999 6766543333321 2456788999999988887543
Q ss_pred -----eEEEEEeec--CCCceEEEeeecCCCCceeEEEecCCCCEEEEee-CCCeEEEEEeeecccccCCCCCCCCcccc
Q psy11529 124 -----LISVCYFES--ENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKST 195 (244)
Q Consensus 124 -----~i~i~d~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 195 (244)
.|.+.|..+ ++. ..... +......++.++|||+++++++ .+.+|.++|+...+...... -..
T Consensus 250 ~~~i~~V~VID~~~~~~~~--~~~~I--pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~------l~~ 319 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSL--FTRYI--PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN------ADP 319 (595)
T ss_dssp SEEETTEEEEECSGGGCCS--SEEEE--EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC------CCG
T ss_pred eeEECcEEEEeCcccCCce--eEEEE--ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccc------cCc
Confidence 245555554 211 00111 1123456899999999777665 57899999995332100000 001
Q ss_pred ccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 196 LGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
......+... ......++|+|+|...++.-.|+.|.+||+++
T Consensus 320 ~~~v~~~v~v----G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 320 RSAVVAEPEL----GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp GGGEEECCBC----CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ccceEEEcCC----CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 1233444443 66789999999994444555799999999865
No 228
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.22 E-value=1.6e-08 Score=77.00 Aligned_cols=146 Identities=9% Similarity=-0.040 Sum_probs=97.4
Q ss_pred EEEcCCCCeEEEecC--CC---eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe----------CCccE
Q psy11529 15 HAWNNTRQQLAFTPN--NQ---EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS----------ADRNA 79 (244)
Q Consensus 15 ~~~~~~~~~l~~~~~--d~---~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i 79 (244)
....|+++++.+... .. .|.++|..+ + +.+..+.....+ .++++|||++++.+. .++.|
T Consensus 26 ~~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t--~--~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v 99 (373)
T 2mad_H 26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGS--G--SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYV 99 (373)
T ss_pred ccCCCCCCEEEEeCCcccCCccEEEEEECCC--C--eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeE
Confidence 344578887766643 22 889999876 4 556666644444 899999999998875 36789
Q ss_pred EEEeeeCCCCCceeeEEEecc-----CcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeE
Q psy11529 80 YVWTQNNDDKKWKPTLVLLRI-----NRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITC 152 (244)
Q Consensus 80 ~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 152 (244)
.+|| ..+.+........+. ......++|+|+|++|++++. ++.|.++| .+++. ... ..+... +
T Consensus 100 ~viD--~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~---~~~-~i~~~~---~ 169 (373)
T 2mad_H 100 EVFD--PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS---DDQ-LLSSPT---C 169 (373)
T ss_pred EEEE--CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE---EeE-EcCCCc---e
Confidence 9999 666664443332200 123568999999999998874 57899999 77653 222 011112 2
Q ss_pred EEecCCC-CEEEEeeCCCeEEEEEe
Q psy11529 153 LDWHPNN-HLLGCGSTDFKVRVFSA 176 (244)
Q Consensus 153 ~~~~p~~-~~l~~~~~dg~i~i~d~ 176 (244)
+.+.|++ +.+++.+.||.+.++|.
T Consensus 170 ~~~~~~~~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 170 YHIHPGAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred EEEEeCCCceEEEEcCCCCEEEEEC
Confidence 4555655 45566778899999987
No 229
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.19 E-value=5.7e-08 Score=72.48 Aligned_cols=201 Identities=15% Similarity=0.065 Sum_probs=119.3
Q ss_pred ceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeee-cc-CCCceEEEEeCC-CCCeEEEEeC-----------
Q psy11529 11 PVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-DG-HDLKVTGIDWAP-NTNRIVTCSA----------- 75 (244)
Q Consensus 11 ~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~-~~~~l~~~~~----------- 75 (244)
....+++.+ ++++++ +...+.|..++..+ +..+.+... .+ .....+.+++.+ +|+..++-..
T Consensus 81 ~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYI-VDCYYHLSVVGSEG--GHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CEEEEEEETTTTEEEE-EETTTEEEEECTTC--EECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred CCceEEEcCCCCcEEE-EECCCCEEEEeCCC--CEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence 467899998 665544 43445588888765 211222111 11 113468899999 9987665432
Q ss_pred ------CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecCCCceEEEeeecCCCC
Q psy11529 76 ------DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAG-SGARLISVCYFESENDWWVAKHIKKPIKS 148 (244)
Q Consensus 76 ------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 148 (244)
++.|..+| ..+++..... ..-.....++++|+++.|+++ ...+.|.+|++....... ...... ..+
T Consensus 158 ~~~~~~~g~v~~~d--~~~~~~~~~~---~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~-~~g 230 (322)
T 2fp8_A 158 MDTSDKTGRLIKYD--PSTKETTLLL---KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVK-IPN 230 (322)
T ss_dssp HHHTCCCEEEEEEE--TTTTEEEEEE---EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEE-CSS
T ss_pred hcccCCCceEEEEe--CCCCEEEEec---cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEe-CCC
Confidence 36788888 6555432211 122445689999999876666 456889999987532100 111111 123
Q ss_pred ceeEEEecCCCCEEEEeeC----------CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCC-CCCCeEEEE
Q psy11529 149 TITCLDWHPNNHLLGCGST----------DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSS-GGGWIHSVA 217 (244)
Q Consensus 149 ~v~~~~~~p~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~ 217 (244)
...++++++|++.++... .+.|..+|. .++.+..+..... ....++.++
T Consensus 231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-------------------~G~~~~~~~~~~g~~~~~~~~~~ 290 (322)
T 2fp8_A 231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-------------------FGNILEVIPLPPPFAGEHFEQIQ 290 (322)
T ss_dssp -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-------------------TSCEEEEEECCTTTTTSCCCEEE
T ss_pred -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-------------------CCCEEEEEECCCCCccccceEEE
Confidence 788999999987666544 356777774 3555555544310 013466676
Q ss_pred EecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 218 FSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 218 ~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
+ .+++++++....+.|..+++...
T Consensus 291 ~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 291 E-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp E-ETTEEEEECSSCSEEEEEEC---
T ss_pred E-eCCEEEEeecCCCceEEEecccc
Confidence 6 46776666667889999998754
No 230
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.18 E-value=3.1e-08 Score=70.52 Aligned_cols=185 Identities=12% Similarity=0.105 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCeEEEecCCC--eEEEeeeccCCCcceeeeeeccCCCce--EEEEeCCCCCeEEEE-eCCccEEEEeeeC
Q psy11529 12 VTTHAWNNTRQQLAFTPNNQ--EVHLYQYEKAANDWSQLDVLDGHDLKV--TGIDWAPNTNRIVTC-SADRNAYVWTQNN 86 (244)
Q Consensus 12 v~~~~~~~~~~~l~~~~~d~--~v~v~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 86 (244)
...+.|+ ++.++.+++.+| .|+++|+.+ + +.+..+.- .... ..++.. +..|... -.++.+.+|| .
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~T--g--kv~~~~~l-~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D--~ 114 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIES--G--KTLQQIEL-GKRYFGEGISDW--KDKIVGLTWKNGLGFVWN--I 114 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTT--C--CEEEEEEC-CTTCCEEEEEEE--TTEEEEEESSSSEEEEEE--T
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCC--C--cEEEEEec-CCccceeEEEEe--CCEEEEEEeeCCEEEEEE--C
Confidence 4678888 676666666655 899999987 5 44444442 2223 234443 4455544 4588999999 7
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC-CceeEEEecCCCCEEEEe
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK-STITCLDWHPNNHLLGCG 165 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~ 165 (244)
.+.+....+... ..-..++ ++++.|+.+..++.|.++|..+.+..........+.. ..++.+.|. +|+..+..
T Consensus 115 ~t~~~~~ti~~~---~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~ 188 (262)
T 3nol_A 115 RNLRQVRSFNYD---GEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANV 188 (262)
T ss_dssp TTCCEEEEEECS---SCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred ccCcEEEEEECC---CCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence 888765555432 2223333 5677787777788899988887765222221111111 334567776 67666555
Q ss_pred eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC---------CCCCCeEEEEEecCCCEEEEeeC
Q psy11529 166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS---------SGGGWIHSVAFSKDGNKLCWTSH 230 (244)
Q Consensus 166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~~~ 230 (244)
-.+..|.+.|. .+++.+..+.... ......+.++|+|+++.|+..+.
T Consensus 189 w~~~~I~vIDp------------------~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 189 WQTNKIVRIDP------------------ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTSSEEEEECT------------------TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccCCeEEEEEC------------------CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 56889999998 5566655554310 00245689999998886666654
No 231
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.18 E-value=5.6e-09 Score=80.34 Aligned_cols=185 Identities=14% Similarity=0.063 Sum_probs=118.3
Q ss_pred CCCCeEEEecC-C----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe----------CCccEEEEe
Q psy11529 19 NTRQQLAFTPN-N----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS----------ADRNAYVWT 83 (244)
Q Consensus 19 ~~~~~l~~~~~-d----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd 83 (244)
++++.++++.. + +.|.++|..+ . +.+..+..-..+ .++++||+++++.+. .++.|.++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t--~--~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGST--G--RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTT--T--EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCC--C--EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 46676665544 2 6999999977 4 667777654555 899999999888775 367899999
Q ss_pred eeCCCCCceeeEEEecc-----CcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeEEEec
Q psy11529 84 QNNDDKKWKPTLVLLRI-----NRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH 156 (244)
Q Consensus 84 ~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 156 (244)
..+.+....+.+.+. ......+.|+|||++++++.. ++.|.+.|..+.+. ......+. . ....
T Consensus 156 --~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv---v~~I~v~g--~---~~~~ 225 (426)
T 3c75_H 156 --PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF---DRMLDVPD--C---YHIF 225 (426)
T ss_dssp --TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE---EEEEECCS--E---EEEE
T ss_pred --CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE---EEEEEcCC--c---eeec
Confidence 788876555543211 134567899999999999874 57899999888764 22222221 1 2333
Q ss_pred CCC-CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE----EecCCCCCCCC-eEEEEEecCCCEEEEeeC
Q psy11529 157 PNN-HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV----ELNNSSSGGGW-IHSVAFSKDGNKLCWTSH 230 (244)
Q Consensus 157 p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~ 230 (244)
|++ +.+++.+.||++.+.+... ++... .+... ..+ ...+.|.+++..++..+.
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~~~------------------~~v~~~~~~~~~v~---~~p~~~~~~~~~dg~~~~~~s~ 284 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDFAD------------------GETKVTNTEVFHTE---DELLINHPAFSLRSGRLVWPTY 284 (426)
T ss_dssp EEETTEEEEEETTSSEEEEECCT------------------TCCEEEECCCCSCT---TSCBCSCCEECTTTCEEEEEBT
T ss_pred cCCCcEEEEEcCCCCEEEEECCC------------------CcEEEEeeeeeccC---CCceeeEeeecCCCCEEEEEeC
Confidence 433 4555566677777776621 11111 11111 111 123567888887766677
Q ss_pred CCcEEEEeCC
Q psy11529 231 DGSINVRMSQ 240 (244)
Q Consensus 231 dg~i~vwd~~ 240 (244)
.+.+.+.|+.
T Consensus 285 ~g~V~ViD~~ 294 (426)
T 3c75_H 285 TGKIFQADLT 294 (426)
T ss_dssp TSEEEEEEEC
T ss_pred CCcEEEEecc
Confidence 7888888874
No 232
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.13 E-value=4.4e-07 Score=64.87 Aligned_cols=204 Identities=12% Similarity=0.143 Sum_probs=126.4
Q ss_pred CCceEEEEEcCCCCeE-EEecCCCeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 9 INPVTTHAWNNTRQQL-AFTPNNQEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l-~~~~~d~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
.+.+..++|+|++..| ++...++.|...|... +....+. +-......+++.+++.++++.-.++.+.++++.
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-----~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~- 99 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-----DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT- 99 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-----CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC-
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-----CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC-
Confidence 3579999999976654 4566678888888765 4444442 122567889999888776766567889999842
Q ss_pred CCCCce--eeEEE----eccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecC---CCceEEEe---eecCCCCceeEEE
Q psy11529 87 DDKKWK--PTLVL----LRINRAATCVKWSPLENKFAAGSGARLISVCYFESE---NDWWVAKH---IKKPIKSTITCLD 154 (244)
Q Consensus 87 ~~~~~~--~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~---~~~~~~~~v~~~~ 154 (244)
..+... ....+ ...+.....++|+|.++.|+++.......+|.++.. ........ ........+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 222211 11111 113445689999999888887777666677777621 11111100 0011234678999
Q ss_pred ecCCC-CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC------CCCCCeEEEEEecCCCEEEE
Q psy11529 155 WHPNN-HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS------SGGGWIHSVAFSKDGNKLCW 227 (244)
Q Consensus 155 ~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~ 227 (244)
++|.. ++++.......+.++|. .++.+..+.... ..-.....++|.++|++.++
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~-------------------~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv 240 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTL-------------------VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV 240 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECT-------------------TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcC-------------------CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE
Confidence 99954 56666666778889986 355444443320 00135689999999985554
Q ss_pred eeCCCcEEEEe
Q psy11529 228 TSHDGSINVRM 238 (244)
Q Consensus 228 ~~~dg~i~vwd 238 (244)
++.+.++++.
T Consensus 241 -sE~n~~y~f~ 250 (255)
T 3qqz_A 241 -SEPNRFYRFT 250 (255)
T ss_dssp -ETTTEEEEEE
T ss_pred -cCCceEEEEE
Confidence 6777666664
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.11 E-value=7.5e-09 Score=84.84 Aligned_cols=159 Identities=7% Similarity=0.009 Sum_probs=106.0
Q ss_pred EEEeCCCCCeEEEEeCCc-------------------cEEEEeeeCCCCCceeeEEEeccC-------cceEEEEECCCC
Q psy11529 60 GIDWAPNTNRIVTCSADR-------------------NAYVWTQNNDDKKWKPTLVLLRIN-------RAATCVKWSPLE 113 (244)
Q Consensus 60 ~~~~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~ 113 (244)
.++++|++..++.++.++ .|..+| ..+++.........+. .....+....+|
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD--~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALD--PDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC--TTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEE--CCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 577888888888776654 488888 8889876665543332 122223333466
Q ss_pred ---CeEEEeeCCCeEEEEEeecCCCceEEEeeecC-------CCCc------------------------eeEEEecCCC
Q psy11529 114 ---NKFAAGSGARLISVCYFESENDWWVAKHIKKP-------IKST------------------------ITCLDWHPNN 159 (244)
Q Consensus 114 ---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~------------------------v~~~~~~p~~ 159 (244)
..++.++.+|.++++|.++++..+........ .... -..++++|++
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~ 404 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT 404 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence 67889999999999999988764433211000 0000 1257889988
Q ss_pred CEEEEeeCC-------------------------------------------CeEEEEEeeecccccCCCCCCCCccccc
Q psy11529 160 HLLGCGSTD-------------------------------------------FKVRVFSAYIKDIESAPQSTNWGSKSTL 196 (244)
Q Consensus 160 ~~l~~~~~d-------------------------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 196 (244)
.++++...+ |.|..||+ .+
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~------------------~t 466 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP------------------VA 466 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET------------------TT
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC------------------CC
Confidence 888776542 56777777 56
Q ss_pred cceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 197 GNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 197 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
++.+-.+.. ..++....+..++.+++.++.||.+++||+++-
T Consensus 467 G~~~W~~~~----~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 467 QKAAWSVEH----VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp TEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CcEEeecCC----CCCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence 777666654 334455566778888888999999999998864
No 234
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.10 E-value=6.6e-08 Score=68.86 Aligned_cols=187 Identities=9% Similarity=0.037 Sum_probs=114.6
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee-ccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL-DGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD 88 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 88 (244)
.-...+.|+ ++.++.+.+.+|.|+++|+++ + +.+..+ .. ...-..+++.. ++..+..-.++.+.+|| ..+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~T--g--kv~~~~l~~-~~FgeGit~~g-~~Ly~ltw~~~~v~V~D--~~T 125 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLES--A--QPVWMERLG-NIFAEGLASDG-ERLYQLTWTEGLLFTWS--GMP 125 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSC--S--SCSEEEECT-TCCEEEEEECS-SCEEEEESSSCEEEEEE--TTT
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCC--C--cEEeEECCC-CcceeEEEEeC-CEEEEEEccCCEEEEEE--CCc
Confidence 334678887 456777778889999999987 5 333333 32 11123455543 23334444689999999 788
Q ss_pred CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCC-CCceeEEEecCCCCEEEEeeC
Q psy11529 89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPI-KSTITCLDWHPNNHLLGCGST 167 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~ 167 (244)
.+....+.. ...-..++ ++++.|+.+..++.|.++|..+.+..........+. -..++.+.|. +|++.+..-.
T Consensus 126 l~~~~ti~~---~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~ 199 (268)
T 3nok_A 126 PQRERTTRY---SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH 199 (268)
T ss_dssp TEEEEEEEC---SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred CcEEEEEeC---CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC
Confidence 776555543 22223444 467888888889999999988776522222111111 1245667777 7765555556
Q ss_pred CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC----------CCCCCCeEEEEEecCCCEEEEee
Q psy11529 168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS----------SSGGGWIHSVAFSKDGNKLCWTS 229 (244)
Q Consensus 168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~~~~l~~~~ 229 (244)
+..|.+.|. .+++.+..+... .......+.++|+|+++.|+..+
T Consensus 200 s~~I~vIDp------------------~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 200 SSDVLEIDP------------------ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CSEEEEECT------------------TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCeEEEEeC------------------CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 889999998 556665554421 00134678999999766554444
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.09 E-value=5.2e-09 Score=82.77 Aligned_cols=201 Identities=7% Similarity=-0.109 Sum_probs=123.1
Q ss_pred CceEEEEE-c-CCCCeEEEec------------------CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCe
Q psy11529 10 NPVTTHAW-N-NTRQQLAFTP------------------NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNR 69 (244)
Q Consensus 10 ~~v~~~~~-~-~~~~~l~~~~------------------~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 69 (244)
.....+++ + |+++++++++ .++.+.+.|.++ . +...++.--. .-..++++|+|++
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t--~--~v~~qI~Vgg-~pd~~~~spdGk~ 208 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK--W--EVAWQVLVSG-NLDNCDADYEGKW 208 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTT--T--EEEEEEEESS-CCCCEEECSSSSE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCC--C--eEEEEEEeCC-CccceEECCCCCE
Confidence 55778887 5 9999988874 245788888876 3 4555544212 3456789999999
Q ss_pred EEEEeCCc--------------------------------------cEEEEeeeCCC--CCceeeEEEeccCcceEEEEE
Q psy11529 70 IVTCSADR--------------------------------------NAYVWTQNNDD--KKWKPTLVLLRINRAATCVKW 109 (244)
Q Consensus 70 l~~~~~d~--------------------------------------~i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~ 109 (244)
+++++.+. .|.+.| ..+ ++. ....+ .......++.+
T Consensus 209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID--~~~~~~~~-~~~~I-pvg~~PhGv~~ 284 (595)
T 1fwx_A 209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD--GRKEASSL-FTRYI-PIANNPHGCNM 284 (595)
T ss_dssp EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE--CSGGGCCS-SEEEE-EEESSCCCEEE
T ss_pred EEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEe--CcccCCce-eEEEE-ecCCCceEEEE
Confidence 88887542 366666 444 221 01111 12345678999
Q ss_pred CCCCCeEEEee-CCCeEEEEEeecCCCc-------eEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeeccc
Q psy11529 110 SPLENKFAAGS-GARLISVCYFESENDW-------WVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDI 181 (244)
Q Consensus 110 ~~~~~~l~~~~-~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~ 181 (244)
+|||+++++++ .+.+|.++|+.+.+.. ................++|+|+|...++..-|++|.+||+.....
T Consensus 285 sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~ 364 (595)
T 1fwx_A 285 APDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIR 364 (595)
T ss_dssp CTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHH
T ss_pred cCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhh
Confidence 99999877766 4889999999865210 000111122335788999999995445566799999999843100
Q ss_pred ccCCCCCCCCccccccceeEEecCCCCCCCCe-----EEEEEecCCCEEEEeeC
Q psy11529 182 ESAPQSTNWGSKSTLGNCLVELNNSSSGGGWI-----HSVAFSKDGNKLCWTSH 230 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~ 230 (244)
.. ... ...+.+..+..| ..+- ..+.++|||++|++...
T Consensus 365 ~~-~g~-------~~~~vi~kidV~---yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 365 AY-AGE-------KVDPIKDKLDVH---YQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp HH-HTC-------SCCCEEEEEECS---SCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred hh-ccc-------ccceeEEEeecc---cccccceeccceEeCCCCCEEEEcCC
Confidence 00 000 114556666654 3221 12245799999988753
No 236
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=99.06 E-value=1e-07 Score=79.23 Aligned_cols=158 Identities=11% Similarity=0.077 Sum_probs=90.4
Q ss_pred ceEEEEEc-CCCCeEEEecC-----CCeEEEeeeccCCC-cceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----cc
Q psy11529 11 PVTTHAWN-NTRQQLAFTPN-----NQEVHLYQYEKAAN-DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----RN 78 (244)
Q Consensus 11 ~v~~~~~~-~~~~~l~~~~~-----d~~v~v~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~ 78 (244)
.+...+|| |||++||.+.. ..+|+++|+.+ + +. ....+. .....++|+|||+.|+....+ ..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~--g~~~-l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD--PSQT-IADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC--TTCC-CCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC--CCEe-CCcccc---CceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 56789999 99999886633 23599999987 3 21 111121 123468899999988877654 35
Q ss_pred EEEEeeeCCCCCceeeEEEe-ccCcceEEEEECCCCCeEEEeeC---CCeEEEEEeecCCCceEEEeeecCCCCceeEEE
Q psy11529 79 AYVWTQNNDDKKWKPTLVLL-RINRAATCVKWSPLENKFAAGSG---ARLISVCYFESENDWWVAKHIKKPIKSTITCLD 154 (244)
Q Consensus 79 i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 154 (244)
|.+++ +.++......... ........+.|+|||++|+.... ...|.++|+......................+.
T Consensus 249 v~~~~--lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 249 VWRHV--MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EEEEE--TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred EEEEE--CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 67777 6665432222222 22344568899999999887653 345777777665321100222222234445555
Q ss_pred ecCCCCEEEEeeCC--C--eEEEEEe
Q psy11529 155 WHPNNHLLGCGSTD--F--KVRVFSA 176 (244)
Q Consensus 155 ~~p~~~~l~~~~~d--g--~i~i~d~ 176 (244)
|+..+.+++....+ + .|..+|+
T Consensus 327 ~~~g~~l~~~t~~~~a~~~~L~~~d~ 352 (751)
T 2xe4_A 327 MHGTSHLVILTNEGGAVNHKLLIAPR 352 (751)
T ss_dssp EETTTEEEEEECTTTCTTCEEEEEET
T ss_pred eeeCCEEEEEeCCCCCCCcEEEEEcC
Confidence 55444444444433 3 4555554
No 237
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.05 E-value=1.2e-07 Score=70.76 Aligned_cols=199 Identities=7% Similarity=-0.041 Sum_probs=115.3
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec-----------------cCCCceEEEEeCC-CCCeEEE
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD-----------------GHDLKVTGIDWAP-NTNRIVT 72 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~-~~~~l~~ 72 (244)
...+++|.++++++.++..++.|..|+..+ +......... .......++++.+ +++ |+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPN--SGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTT--TCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCC--CceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 456789999998777888889999998866 3222211100 0113578899998 565 444
Q ss_pred EeCCccEEEEeeeCCCCCceeeEEEec--cCcceEEEEECC-CCCeEEEeeC-----------------CCeEEEEEeec
Q psy11529 73 CSADRNAYVWTQNNDDKKWKPTLVLLR--INRAATCVKWSP-LENKFAAGSG-----------------ARLISVCYFES 132 (244)
Q Consensus 73 ~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~i~d~~~ 132 (244)
+...+.+..+| ..++.......... .......+++.+ +|+..++-.. ++.+..+|..+
T Consensus 97 ~d~~~~i~~~d--~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 97 VDCYYHLSVVG--SEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EETTTEEEEEC--TTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EECCCCEEEEe--CCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 54445588888 55543221111111 123468899999 8876665322 35676766554
Q ss_pred CCCceEEEeeecCCCCceeEEEecCCCCEEEEe-eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCC
Q psy11529 133 ENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG-STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGG 211 (244)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (244)
++. ..... .......++++|+++.|+.+ +..+.|.+|++..... ...+.... . .+
T Consensus 175 ~~~----~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-------------~~~~~~~~--~----~g 230 (322)
T 2fp8_A 175 KET----TLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-------------GTAEVLVK--I----PN 230 (322)
T ss_dssp TEE----EEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-------------TCEEEEEE--C----SS
T ss_pred CEE----EEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-------------CccceEEe--C----CC
Confidence 432 11111 11345679999999866555 5568999999742110 00111111 1 33
Q ss_pred CeEEEEEecCCCEEEEeeC----------CCcEEEEeC
Q psy11529 212 WIHSVAFSKDGNKLCWTSH----------DGSINVRMS 239 (244)
Q Consensus 212 ~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~ 239 (244)
...+++.++|++.++... .+.|..+|.
T Consensus 231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~ 267 (322)
T 2fp8_A 231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE 267 (322)
T ss_dssp -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC
Confidence 678889999886665543 345666654
No 238
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.05 E-value=1.4e-10 Score=88.27 Aligned_cols=172 Identities=14% Similarity=0.009 Sum_probs=87.4
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCC-ceE-EEEeCCCCCeEEEEeCCccEEEEeeeCCC
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDL-KVT-GIDWAPNTNRIVTCSADRNAYVWTQNNDD 88 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~-~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 88 (244)
++.+..+..++..+++++.|+.|+.||..+ + +.+..+..+.. .+. +..+. .+..+++++.++.++.|| ..+
T Consensus 39 ~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t--G--~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D--~~t 111 (369)
T 2hz6_A 39 PVLQVPTHVEEPAFLPDPNDGSLYTLGSKN--N--EGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVID--LLT 111 (369)
T ss_dssp CSCCCC-----CCEEECTTTCCEEEC---------CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEEC--CC-
T ss_pred CceecceEcCCCEEEEeCCCCEEEEEECCC--C--ceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEE--CCC
Confidence 344444556777888888999999999966 3 33333332211 110 11111 345677888899999999 788
Q ss_pred CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC---CEEEEe
Q psy11529 89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN---HLLGCG 165 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~~~ 165 (244)
++....... +. ...++|++..+++++.++.++.||.++++..|..... ......+.++. ..++++
T Consensus 112 G~~~w~~~~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~------~~~~~~~~~~~~~~~~v~~~ 179 (369)
T 2hz6_A 112 GEKQQTLSS--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF------DYAASLPEDDVDYKMSHFVS 179 (369)
T ss_dssp ---------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE------EECCBCCCCCTTCCCCEEEE
T ss_pred CcEEEEecC--CC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc------cccCccccCCccccceEEEE
Confidence 875544432 11 2345678888999999999999999998875544321 11233344432 467778
Q ss_pred eCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeE-EEEEecCCC
Q psy11529 166 STDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIH-SVAFSKDGN 223 (244)
Q Consensus 166 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~ 223 (244)
+.+|.|+.||. .+++.+..+.. ..++. ...++++|.
T Consensus 180 ~~dg~v~a~d~------------------~tG~~~W~~~~----~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 180 NGDGLVVTVDS------------------ESGDVLWIQNY----ASPVVAFYVWQREGL 216 (369)
T ss_dssp ETSCEEEEECT------------------TTCCEEEEEEC----SSCEEEEEECTTSSC
T ss_pred CCCCEEEEEEC------------------CCCcEEEEecC----CCceEEEEEecCCce
Confidence 89999999998 56777766654 33443 344555664
No 239
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.04 E-value=3.8e-07 Score=64.39 Aligned_cols=189 Identities=12% Similarity=0.086 Sum_probs=113.8
Q ss_pred CCceEEEEEcCCCCeEEEecCC--CeEEEeeeccCCCcceeeeeeccCCC-ceEEEEeCCCCCeEE-EEeCCccEEEEee
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNN--QEVHLYQYEKAANDWSQLDVLDGHDL-KVTGIDWAPNTNRIV-TCSADRNAYVWTQ 84 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d--~~v~v~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~-~~~~d~~i~iwd~ 84 (244)
..-...+.|++ +.++.+.+.. ..|+++|+.+ + +.+..+.-... .-..+++. +..|. ..-.++.+.+||
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t--g--kv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D- 91 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLET--G--RILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYD- 91 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTT--C--CEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEE-
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCC--C--CEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEE-
Confidence 34566889986 5666666654 4899999987 5 44444432111 11234443 44444 445689999999
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC-CceeEEEecCCCCEEE
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK-STITCLDWHPNNHLLG 163 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~ 163 (244)
..+.+....+... ..-..++ +++..|+.+..++.|.++|..+.+..........+.. ..++.+.|. +|+.++
T Consensus 92 -~~tl~~~~ti~~~---~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lya 164 (243)
T 3mbr_X 92 -LATLTPRARFRYP---GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLA 164 (243)
T ss_dssp -TTTTEEEEEEECS---SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred -CCcCcEEEEEeCC---CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEE
Confidence 7787755555432 2334444 4677777777889999999887765222222111111 345566665 666555
Q ss_pred EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC----------CCCCCCeEEEEEecCCCEEEEeeC
Q psy11529 164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS----------SSGGGWIHSVAFSKDGNKLCWTSH 230 (244)
Q Consensus 164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~~~~l~~~~~ 230 (244)
..-.+..|.+.|. .+++.+..+... .......+.++++|+++.|+..+.
T Consensus 165 nvw~s~~I~vIDp------------------~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 165 NVWLTSRIARIDP------------------ASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EETTTTEEEEECT------------------TTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCeEEEEEC------------------CCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 5556789999998 555555554421 001346789999998776555543
No 240
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.03 E-value=3.7e-08 Score=80.75 Aligned_cols=183 Identities=11% Similarity=0.098 Sum_probs=119.7
Q ss_pred EEEEcCCCCeEEEecCCC-------------------eEEEeeeccCCCcceeeeeecc--CC-------CceEEEEeCC
Q psy11529 14 THAWNNTRQQLAFTPNNQ-------------------EVHLYQYEKAANDWSQLDVLDG--HD-------LKVTGIDWAP 65 (244)
Q Consensus 14 ~~~~~~~~~~l~~~~~d~-------------------~v~v~~~~~~~~~~~~~~~~~~--~~-------~~v~~~~~~~ 65 (244)
.++++|++.+++++..++ .|..+|..+ + +....++. |. .....+....
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T--G--~~~W~~~~~~~d~wd~~~~~~p~l~~~~~ 322 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT--G--KYKWHYQETPGDNWDYTSTQPMILADIKI 322 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT--C--CEEEEEESSTTCCSCCCCCSCCEEEEEEE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC--C--CEEEEEecCCCcccccccCCCcEEEeccc
Confidence 578889888888876654 488888876 5 44433332 21 1122233334
Q ss_pred CC---CeEEEEeCCccEEEEeeeCCCCCceeeEEEeccC---------cce------------------------EEEEE
Q psy11529 66 NT---NRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRIN---------RAA------------------------TCVKW 109 (244)
Q Consensus 66 ~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------~~v------------------------~~~~~ 109 (244)
+| ..++.++.+|.++++| ..+++.+......... ..+ ..++|
T Consensus 323 dG~~~~~l~~~~~~G~l~~lD--~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~ 400 (677)
T 1kb0_A 323 AGKPRKVILHAPKNGFFFVLD--RTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSF 400 (677)
T ss_dssp TTEEEEEEEECCTTSEEEEEE--TTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEE
T ss_pred CCcEeeEEEEECCCCEEEEEE--CCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceE
Confidence 67 6788899999999999 8888865443321100 000 15688
Q ss_pred CCCCCeEEEeeC-------------------------------------------CCeEEEEEeecCCCceEEEeeecCC
Q psy11529 110 SPLENKFAAGSG-------------------------------------------ARLISVCYFESENDWWVAKHIKKPI 146 (244)
Q Consensus 110 ~~~~~~l~~~~~-------------------------------------------d~~i~i~d~~~~~~~~~~~~~~~~~ 146 (244)
+|+..++++... .+.|..||+.+++..|....
T Consensus 401 dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----- 475 (677)
T 1kb0_A 401 NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH----- 475 (677)
T ss_dssp ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-----
T ss_pred cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-----
Confidence 898888777543 27799999998876444432
Q ss_pred CCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEE
Q psy11529 147 KSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLC 226 (244)
Q Consensus 147 ~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 226 (244)
........+.+++.++++++.||.+++||. .+++.+.++.... .....-+.|.++|+.++
T Consensus 476 ~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~------------------~tG~~lw~~~~~~--~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 476 VSPWNGGTLTTAGNVVFQGTADGRLVAYHA------------------ATGEKLWEAPTGT--GVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEET------------------TTCCEEEEEECSS--CCCSCCEEEEETTEEEE
T ss_pred CCCCcCcceEeCCCEEEEECCCCcEEEEEC------------------CCCceeeeeeCCC--CcccCCEEEEeCCEEEE
Confidence 223444556677888888999999999999 7888888887542 33334566778887444
Q ss_pred E
Q psy11529 227 W 227 (244)
Q Consensus 227 ~ 227 (244)
.
T Consensus 536 ~ 536 (677)
T 1kb0_A 536 S 536 (677)
T ss_dssp E
T ss_pred E
Confidence 3
No 241
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.03 E-value=9.3e-07 Score=64.02 Aligned_cols=186 Identities=11% Similarity=0.053 Sum_probs=112.8
Q ss_pred CeEEEecCCCeEEEeeeccCCCccee---eeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCCCCCceeeEEE
Q psy11529 22 QQLAFTPNNQEVHLYQYEKAANDWSQ---LDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNNDDKKWKPTLVL 97 (244)
Q Consensus 22 ~~l~~~~~d~~v~v~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~ 97 (244)
.+|+.+.. +.|+.+++++ ..... ...+........+++|++++..|+.+ ...+.|..++ ...+... ...
T Consensus 2 ~~l~~~~~-~~I~~~~~~g--~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~--~~g~~~~--~~~ 74 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLER--NTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRAS--LHGGEPT--TII 74 (267)
T ss_dssp EEEEEEEE-EEEEEEEESS--SCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEE--SSSCCCE--EEE
T ss_pred cEEEEEcC-CeEEEEEecC--cccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEe--cCCCCcE--EEE
Confidence 45666553 5788888876 31111 11122223457899999976655554 4578899999 5544321 112
Q ss_pred eccCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC---CCeEEE
Q psy11529 98 LRINRAATCVKWSPLENKFAAG-SGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST---DFKVRV 173 (244)
Q Consensus 98 ~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---dg~i~i 173 (244)
.........++++|++..|+.+ ...+.|.+++++.... .............++++|++..|+.+.. .+.|..
T Consensus 75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~----~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~ 150 (267)
T 1npe_A 75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET 150 (267)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE----EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence 2223567899999976665555 4567899988875433 1112222246789999997665555443 367888
Q ss_pred EEeeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529 174 FSAYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ 240 (244)
Q Consensus 174 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~ 240 (244)
+++. +.....+. .. ......++++|++..|+.+. ..+.|.++|+.
T Consensus 151 ~~~d-------------------g~~~~~~~~~~---~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~ 197 (267)
T 1npe_A 151 SHMD-------------------GTNRRILAQDN---LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (267)
T ss_dssp EETT-------------------SCCCEEEECTT---CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EecC-------------------CCCcEEEEECC---CCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence 8762 22222221 22 44678999999877665554 56789999875
No 242
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.02 E-value=8.6e-07 Score=65.61 Aligned_cols=200 Identities=13% Similarity=0.021 Sum_probs=115.2
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc--cEEEEeeeCC
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR--NAYVWTQNND 87 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~ 87 (244)
.....++|+++|+++++...++.|..|+..+ .....+. .......++++++|+++++..... .|..+| ..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-----~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d--~~ 103 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-----NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLV--KS 103 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-----CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEE--CT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-----ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEc--CC
Confidence 4577899999999777766788999998766 2222222 345688999999998666543322 466666 66
Q ss_pred CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC-ceEEEe-----eecCCCCceeEEEecCCCCE
Q psy11529 88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND-WWVAKH-----IKKPIKSTITCLDWHPNNHL 161 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~-----~~~~~~~~v~~~~~~p~~~~ 161 (244)
+++....... ........++..+++..+++-..++.|.++|...... ...... .....-...+.+ +|+++.
T Consensus 104 ~g~~~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 104 DGTVETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp TSCEEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CCeEEEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 7764332222 1222334555555554444444578787777654321 000000 000111234455 788876
Q ss_pred EEEe-eCCCeEEEEEeeec-ccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529 162 LGCG-STDFKVRVFSAYIK-DIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS 239 (244)
Q Consensus 162 l~~~-~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 239 (244)
|+.+ ...++|..|++... .. ...+.... ......++++++|+++++....+.|.++|.
T Consensus 181 lyv~d~~~~~I~~~~~~~~g~~-------------~~~~~~~~-------~~~P~gi~vd~dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 181 LYVSNTEKMLLLRIPVDSTDKP-------------GEPEIFVE-------QTNIDDFAFDVEGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp EEEEETTTTEEEEEEBCTTSCB-------------CCCEEEEE-------SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred EEEEeCCCCEEEEEEeCCCCCC-------------CccEEEec-------cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence 5554 45678999998421 00 00111111 123456888899987777666778888875
Q ss_pred C
Q psy11529 240 Q 240 (244)
Q Consensus 240 ~ 240 (244)
.
T Consensus 241 ~ 241 (306)
T 2p4o_A 241 D 241 (306)
T ss_dssp T
T ss_pred C
Confidence 4
No 243
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.01 E-value=4.6e-08 Score=80.37 Aligned_cols=182 Identities=13% Similarity=0.099 Sum_probs=117.5
Q ss_pred EEEEcCCCCeEEEecCCCe-------------------EEEeeeccCCCcceeeeeecc--CC-------CceEEEEeCC
Q psy11529 14 THAWNNTRQQLAFTPNNQE-------------------VHLYQYEKAANDWSQLDVLDG--HD-------LKVTGIDWAP 65 (244)
Q Consensus 14 ~~~~~~~~~~l~~~~~d~~-------------------v~v~~~~~~~~~~~~~~~~~~--~~-------~~v~~~~~~~ 65 (244)
.++++|++.+++++..++. |..+|.++ + +.+..++. |. .+........
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T--G--~~~W~~~~~~~d~wd~~~~~~~~l~d~~~ 314 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT--G--EYVWHYQTTPGDAWDYTATQHMILAELPI 314 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT--C--CEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC--C--ceeEeeecCCcccccccCCCCcEEEeecc
Confidence 5788898888888877653 88999887 5 44444432 21 1222222222
Q ss_pred CCC---eEEEEeCCccEEEEeeeCCCCCceeeEEEecc--------------------------C-----------cceE
Q psy11529 66 NTN---RIVTCSADRNAYVWTQNNDDKKWKPTLVLLRI--------------------------N-----------RAAT 105 (244)
Q Consensus 66 ~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------------------~-----------~~v~ 105 (244)
+|+ .++.++.+|.++++| ..+++.+....+... . ..-.
T Consensus 315 ~G~~~~~v~~~~~~G~l~~lD--~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~ 392 (689)
T 1yiq_A 315 DGKPRKVLMQAPKNGFFYVID--RATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQ 392 (689)
T ss_dssp TTEEEEEEEECCTTSEEEEEE--TTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSS
T ss_pred CCcEEEEEEEECCCCeEEEEE--CCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCC
Confidence 554 788899999999999 888886532221100 0 0011
Q ss_pred EEEECCCCCeEEEeeC---------------------------------------------CCeEEEEEeecCCCceEEE
Q psy11529 106 CVKWSPLENKFAAGSG---------------------------------------------ARLISVCYFESENDWWVAK 140 (244)
Q Consensus 106 ~~~~~~~~~~l~~~~~---------------------------------------------d~~i~i~d~~~~~~~~~~~ 140 (244)
.++|+|+..++++... ++.|..||+.+++..|...
T Consensus 393 ~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~ 472 (689)
T 1yiq_A 393 PMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP 472 (689)
T ss_dssp CCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE
T ss_pred cceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc
Confidence 2688888777776522 3779999999987644433
Q ss_pred eeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEec
Q psy11529 141 HIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSK 220 (244)
Q Consensus 141 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 220 (244)
.. .....-.+...+.++++++.||.++.||. .+++.+.+++... .....-+.|..
T Consensus 473 ~~-----~~~~~g~~~tagglvf~gt~dg~l~a~D~------------------~tG~~lw~~~~~~--~~~~~p~ty~~ 527 (689)
T 1yiq_A 473 YV-----TIFNGGTLSTAGNLVFEGSADGRVIAYAA------------------DTGEKLWEQPAAS--GVMAAPVTYSV 527 (689)
T ss_dssp ES-----SSCCCCEEEETTTEEEEECTTSEEEEEET------------------TTCCEEEEEECSS--CCCSCCEEEEE
T ss_pred CC-----CCccCccceECCCEEEEECCCCcEEEEEC------------------CCCccceeeeCCC--CcccCceEEEE
Confidence 21 22333355667889999999999999999 7889988887642 22234577788
Q ss_pred CCCEEE
Q psy11529 221 DGNKLC 226 (244)
Q Consensus 221 ~~~~l~ 226 (244)
+|+.++
T Consensus 528 ~G~qyv 533 (689)
T 1yiq_A 528 DGEQYV 533 (689)
T ss_dssp TTEEEE
T ss_pred CCEEEE
Confidence 998443
No 244
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.00 E-value=6.5e-08 Score=79.49 Aligned_cols=159 Identities=10% Similarity=0.017 Sum_probs=102.5
Q ss_pred EEEeCCCCCeEEEEeCCcc-------------------EEEEeeeCCCCCceeeEEEeccC-------cceEEEEECCCC
Q psy11529 60 GIDWAPNTNRIVTCSADRN-------------------AYVWTQNNDDKKWKPTLVLLRIN-------RAATCVKWSPLE 113 (244)
Q Consensus 60 ~~~~~~~~~~l~~~~~d~~-------------------i~iwd~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~ 113 (244)
.++++|+...++.++.++. |..+| ..+++.+.......+. ..+.......+|
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD--~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G 316 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVN--ADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDG 316 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEE--TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEE--ccCCceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence 5778888888888877763 89999 8899876655533222 111112222245
Q ss_pred C---eEEEeeCCCeEEEEEeecCCCceEEEeee------------------------cCCC-----------CceeEEEe
Q psy11529 114 N---KFAAGSGARLISVCYFESENDWWVAKHIK------------------------KPIK-----------STITCLDW 155 (244)
Q Consensus 114 ~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------------------~~~~-----------~~v~~~~~ 155 (244)
+ .++.++.+|.++++|.++++..+...... .... ..-..+++
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 4 68889999999999998887632211100 0000 01123788
Q ss_pred cCCCCEEEEeeCC---------------------------------------------CeEEEEEeeecccccCCCCCCC
Q psy11529 156 HPNNHLLGCGSTD---------------------------------------------FKVRVFSAYIKDIESAPQSTNW 190 (244)
Q Consensus 156 ~p~~~~l~~~~~d---------------------------------------------g~i~i~d~~~~~~~~~~~~~~~ 190 (244)
+|+..++++...+ |.|+.||+
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~-------------- 462 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP-------------- 462 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET--------------
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC--------------
Confidence 9988887776433 55666666
Q ss_pred CccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 191 GSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
.+++.+-.+..+ .+...-.+...+.+++.++.||.++.||.++-
T Consensus 463 ----~tG~~~W~~~~~----~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG 506 (689)
T 1yiq_A 463 ----VKQQAAWEVPYV----TIFNGGTLSTAGNLVFEGSADGRVIAYAADTG 506 (689)
T ss_dssp ----TTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ----CCCCeEeEccCC----CCccCccceECCCEEEEECCCCcEEEEECCCC
Confidence 667777666553 23333456667889999999999999998864
No 245
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.91 E-value=2.1e-07 Score=69.38 Aligned_cols=188 Identities=10% Similarity=-0.013 Sum_probs=114.4
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK 90 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 90 (244)
.+.++...+++. +.+++.++.|..++..+ +....+......+.++...+++...+. + +.+..+| . +++
T Consensus 138 ~~~~~~~~~~g~-l~vgt~~~~l~~~d~~g-----~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d--~-~g~ 205 (330)
T 3hxj_A 138 IYATPIVSEDGT-IYVGSNDNYLYAINPDG-----TEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN--P-DGT 205 (330)
T ss_dssp CCSCCEECTTSC-EEEECTTSEEEEECTTS-----CEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC--T-TSC
T ss_pred eeeeeEEcCCCE-EEEEcCCCEEEEECCCC-----CEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC--C-CCc
Confidence 344555666666 44566778899998874 344444444556677778777775544 4 7788888 3 444
Q ss_pred ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCe
Q psy11529 91 WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFK 170 (244)
Q Consensus 91 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 170 (244)
.. .........+.++...+++. +.+++.++.+..++. ++... ... ......+..+...+++ .|..++.+|.
T Consensus 206 ~~--~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~---~~~-~~~~~~~~~~~~~~~g-~l~v~t~~gg 276 (330)
T 3hxj_A 206 EK--WNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEK---WRF-KTGKRIESSPVIGNTD-TIYFGSYDGH 276 (330)
T ss_dssp EE--EEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEE---EEE-ECSSCCCSCCEECTTS-CEEEECTTCE
T ss_pred EE--EEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEe---EEe-eCCCCccccceEcCCC-eEEEecCCCC
Confidence 22 22223345677888888765 555666777777753 33321 111 1222333445555566 5666778888
Q ss_pred EEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 171 VRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 171 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
|..+|. .++.+..+... ...+.++...++|++ ..++.+|.+++...+..
T Consensus 277 l~~~d~-------------------~g~~~~~~~~~---~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 277 LYAINP-------------------DGTEKWNFETG---SWIIATPVIDENGTI-YFGTRNGKFYALFNLEH 325 (330)
T ss_dssp EEEECT-------------------TSCEEEEEECS---SCCCSCCEECTTCCE-EEECTTSCEEEEEC---
T ss_pred EEEECC-------------------CCcEEEEEEcC---CccccceEEcCCCEE-EEEcCCCeEEEEecccc
Confidence 888884 34555555544 556777788788874 45778999999876654
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.91 E-value=4.7e-07 Score=65.09 Aligned_cols=166 Identities=8% Similarity=-0.026 Sum_probs=103.9
Q ss_pred eeeeeeccCCC--ceEEEEeCCCCCeEEEEeC--CccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee-
Q psy11529 46 SQLDVLDGHDL--KVTGIDWAPNTNRIVTCSA--DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS- 120 (244)
Q Consensus 46 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 120 (244)
+.+.++. |.. ....+.|++++..+++.+. ++.|.++| ..+++......+.. ......+++. +..|+.++
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD--~~tg~v~~~i~l~~-~~fgeGi~~~--g~~lyv~t~ 83 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVA--LQTGKVENIHKMDD-SYFGEGLTLL--NEKLYQVVW 83 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEE--TTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEET
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEE--CCCCCEEEEEecCC-CcceEEEEEe--CCEEEEEEe
Confidence 4455554 543 3589999998755554443 57999999 88888665544322 2222345554 44555544
Q ss_pred CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccccee
Q psy11529 121 GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL 200 (244)
Q Consensus 121 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (244)
.++.+.++|..+.+. ......+ ... ...+++||+.++++..+++|.++|. .+.+..
T Consensus 84 ~~~~v~viD~~t~~v---~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~------------------~t~~v~ 139 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSN---IKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDP------------------HTFKLI 139 (266)
T ss_dssp TCSEEEEEETTTTEE---EEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECT------------------TTCCEE
T ss_pred cCCEEEEEECCCCcE---EEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEEC------------------CCCcEE
Confidence 588999999887754 2222222 111 2345668887777777889999998 455555
Q ss_pred EEecCCCC--CCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 201 VELNNSSS--GGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 201 ~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
..+..... .-..++.+.|. +|+..+....++.|.+.|..+.
T Consensus 140 ~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg 182 (266)
T 2iwa_A 140 KKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDG 182 (266)
T ss_dssp EEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTC
T ss_pred EEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCC
Confidence 55543100 01246788888 7766555556789999998765
No 247
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.86 E-value=1e-05 Score=60.95 Aligned_cols=199 Identities=10% Similarity=0.084 Sum_probs=117.8
Q ss_pred EeCCCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEee
Q psy11529 6 SFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQ 84 (244)
Q Consensus 6 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~ 84 (244)
.+..+..+|.+..++. .|+.+. ...|+..++.+ . .....+. .......++|++....|+.+ ...+.|..++
T Consensus 30 ~l~~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g--~--~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~- 101 (349)
T 3v64_C 30 ELRPDRRSCKALGPEP-VLLFAN-RIDIRQVLPHR--S--EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRAN- 101 (349)
T ss_dssp EECTTSSCEEESSSCC-EEEEEC-BSCEEEECTTS--C--CEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEE-
T ss_pred cCCCCCCcccccccCc-eeEeec-ccceEEEeCCC--C--eeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEe-
Confidence 3445556676666643 444443 35687778766 3 2222233 33457899999866665554 4567888888
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECCCCCeE-EEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKF-AAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
........ . ..........+++.+.+..| ++-...+.|.+.+++.... .......-.....++++|.+..|+
T Consensus 102 -~~g~~~~~-~-~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~----~~l~~~~l~~P~~iavdp~~g~ly 174 (349)
T 3v64_C 102 -LNGSNVEE-V-VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR----KVLLWQSLEKPRAIALHPMEGTIY 174 (349)
T ss_dssp -TTSCSCEE-E-ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECTTCSCEEEEEEETTTTEEE
T ss_pred -cCCCCceE-E-EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce----EEEEeCCCCCcceEEEecCcCeEE
Confidence 55544221 1 22223456788998765555 4444567898888776543 222223335678999999665555
Q ss_pred Eee-CC-CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529 164 CGS-TD-FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ 240 (244)
Q Consensus 164 ~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~ 240 (244)
... .. +.|..+++. +.....+.... -.....++++|++..|+.+. ..+.|..+|+.
T Consensus 175 ~td~~~~~~I~r~~~d-------------------G~~~~~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 175 WTDWGNTPRIEASSMD-------------------GSGRRIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp EEECSSSCEEEEEETT-------------------SCSCEESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EeccCCCCEEEEEeCC-------------------CCCcEEEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 443 34 678888762 22222222110 44578999998777666554 45678888865
No 248
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.85 E-value=5.4e-06 Score=61.29 Aligned_cols=191 Identities=13% Similarity=0.025 Sum_probs=108.4
Q ss_pred CCceEEEEEcCCCCeEEEecCCC--eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQ--EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~--~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
......+++.++|+++++....+ .|..++..+ +....+..+. .......++..+++..+++-..++.|..+| .
T Consensus 71 ~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~--g~~~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d--~ 145 (306)
T 2p4o_A 71 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD--GTVETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLID--V 145 (306)
T ss_dssp SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT--SCEEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEE--T
T ss_pred CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC--CeEEEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEe--C
Confidence 34677899999999666553322 466666555 4333333332 122335555555554455444578888888 5
Q ss_pred CCCCceeeEEE--------eccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529 87 DDKKWKPTLVL--------LRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP 157 (244)
Q Consensus 87 ~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 157 (244)
..++....... ...-...+.+ +|+++.|+++. ..+.|..++++............. ......+++++
T Consensus 146 ~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~ 221 (306)
T 2p4o_A 146 VQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDV 221 (306)
T ss_dssp TTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBT
T ss_pred CCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECC
Confidence 44321111000 0011234455 77887666654 477899999875211100111111 13467789999
Q ss_pred CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccccee--EEecCCCCCCCCeEEEEEe---cCCCEEEEeeC
Q psy11529 158 NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL--VELNNSSSGGGWIHSVAFS---KDGNKLCWTSH 230 (244)
Q Consensus 158 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~ 230 (244)
+|+++++....+.|.++|. .++.. ..+... ....++++|. |+++.|+..+.
T Consensus 222 dG~l~va~~~~~~V~~~~~-------------------~G~~~~~~~~~~~---~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 222 EGNLYGATHIYNSVVRIAP-------------------DRSTTIIAQAEQG---VIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp TCCEEEECBTTCCEEEECT-------------------TCCEEEEECGGGT---CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CCCEEEEeCCCCeEEEECC-------------------CCCEEEEeecccc---cCCceEEEEecccCCCCEEEEECC
Confidence 9988777777889999985 24432 223332 3568999999 88776665543
No 249
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.83 E-value=8.6e-06 Score=58.22 Aligned_cols=170 Identities=11% Similarity=0.124 Sum_probs=108.6
Q ss_pred eeccCCCceEEEEeCCCCCeEEE-EeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEE
Q psy11529 50 VLDGHDLKVTGIDWAPNTNRIVT-CSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVC 128 (244)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 128 (244)
.+.+-...+..++|+|++..|++ ...++.|...| .. ++......+ ........+++.+++.++++.-.++.+.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld--~~-g~v~~~i~l-~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMT--TN-GDLIRTIPL-DFVKDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEE--TT-CCEEEEEEC-SSCSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEe--CC-CCEEEEEec-CCCCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 45555667999999997665554 56678888888 55 664444432 333678899999988876776678889999
Q ss_pred EeecCCCceEEEeee-----cCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEe
Q psy11529 129 YFESENDWWVAKHIK-----KPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL 203 (244)
Q Consensus 129 d~~~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (244)
++............. .+.+.....++|+|+++.|.++.+.....+|.+.. .. ....+..+
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g--~~-------------~~~~l~i~ 161 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG--LL-------------SSNELHIS 161 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES--TT-------------CSSCCEEE
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc--cc-------------cCCceeee
Confidence 987765422222221 12345678999999998777777766666776631 00 00011111
Q ss_pred -----c--CCCCCCCCeEEEEEecC-CCEEEEeeCCCcEEEEeCCC
Q psy11529 204 -----N--NSSSGGGWIHSVAFSKD-GNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 204 -----~--~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~ 241 (244)
. .. ...+.+++++|. +++++.+..+..+.++|.+-
T Consensus 162 ~~~~~~~~~~---~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 162 KDKALQRQFT---LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp ECHHHHHTCC---SSCCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred cchhhccccc---cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC
Confidence 0 11 345789999994 45556666667777777653
No 250
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=3.3e-06 Score=65.50 Aligned_cols=155 Identities=12% Similarity=0.134 Sum_probs=95.6
Q ss_pred ceEEEEEcC-CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-Cc----cEEEEee
Q psy11529 11 PVTTHAWNN-TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-DR----NAYVWTQ 84 (244)
Q Consensus 11 ~v~~~~~~~-~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~iwd~ 84 (244)
....++++| ++..|.++...+.|+.+++.+ + .+..+.........++|++++++|+.+.. ++ .+...+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~--~---~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~- 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK--E---YVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT- 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTT--T---EEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCC--C---EEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-
Confidence 446789998 355555554447888898876 3 33333334566789999999996666554 11 233344
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
..+.......+. .......++++| ++.++++-..++.|..++.+.... ......+.......++|+|+|++|+
T Consensus 212 --~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~---~~~~~~~~~~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 212 --RESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET---TPLFTIQDSGWEFHIQFHPSGNYAY 285 (430)
T ss_dssp --GGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE---EEEEECSSSSCCEEEEECTTSSEEE
T ss_pred --CCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE---EEEEEcCCCCcceeEEEcCCCCEEE
Confidence 333332112222 234567889999 566555555678888888765432 1112222224578999999999554
Q ss_pred E-eeCCCeEEEEEee
Q psy11529 164 C-GSTDFKVRVFSAY 177 (244)
Q Consensus 164 ~-~~~dg~i~i~d~~ 177 (244)
. -...+.|..++..
T Consensus 286 v~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 286 IVVVNQHYILRSDYD 300 (430)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred EEECCCCEEEEEeCC
Confidence 4 4467789998874
No 251
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.81 E-value=8e-07 Score=66.19 Aligned_cols=176 Identities=11% Similarity=-0.006 Sum_probs=108.5
Q ss_pred CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEecc
Q psy11529 21 RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRI 100 (244)
Q Consensus 21 ~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 100 (244)
+..+.+++.++.|..++..+ +...........+.++...+++. +..++.++.+..+| .. ++...... ..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g-----~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d--~~-g~~~~~~~--~~ 175 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDG-----TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAIN--PD-GTEKWRFK--TN 175 (330)
T ss_dssp TTEEEEECTTSEEEEECTTS-----CEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEEC--TT-SCEEEEEE--CS
T ss_pred CCEEEEEecCCEEEEEcCCC-----CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEEC--CC-CCEeEEEe--cC
Confidence 44566677788899888764 33444444445566677777776 55567788999999 66 65433332 23
Q ss_pred CcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecc
Q psy11529 101 NRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKD 180 (244)
Q Consensus 101 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~ 180 (244)
...+.++...+++..++ ++ +.+..+| .+++. ..........+.++...++|. |..++.++.|..+|.
T Consensus 176 ~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~----~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~---- 242 (330)
T 3hxj_A 176 DAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTE----KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP---- 242 (330)
T ss_dssp SCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCE----EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT----
T ss_pred CCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcE----EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC----
Confidence 44566777777776544 44 6788888 55443 122222335677888888875 445667777888863
Q ss_pred cccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529 181 IESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS 239 (244)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 239 (244)
.++.+..+... ...+..+...+++. |..++.+|.|..+|.
T Consensus 243 ---------------~g~~~~~~~~~---~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 243 ---------------DGTEKWRFKTG---KRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp ---------------TSCEEEEEECS---SCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred ---------------CCCEeEEeeCC---CCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 34444444443 33344555655664 555667777888875
No 252
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.79 E-value=2.2e-07 Score=70.32 Aligned_cols=127 Identities=10% Similarity=-0.124 Sum_probs=87.5
Q ss_pred eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe----------CCccEEEEeeeCCCCCceeeEEEecc-
Q psy11529 32 EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS----------ADRNAYVWTQNNDDKKWKPTLVLLRI- 100 (244)
Q Consensus 32 ~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~- 100 (244)
.|.++|..+ . +.+.++.....+ .+.++|++++++.+. .++.|.+|| ..+++....+...+.
T Consensus 47 ~vsvID~~t--~--~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD--~~T~~vv~~I~v~~~~ 118 (368)
T 1mda_H 47 ENWVSCAGC--G--VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD--PVTFLPIADIELPDAP 118 (368)
T ss_dssp EEEEEETTT--T--EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEEC--TTTCCEEEEEEETTSC
T ss_pred eEEEEECCC--C--eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEE--CCCCCEEEEEECCCcc
Confidence 888999877 4 677777655555 799999999988876 378999999 888886655543211
Q ss_pred ----CcceEEEEECCCCCeEEEeeC--CCeEEE--EEeecCCCceEEEeeecCCCCceeEEEecCCCC-EEEEeeCCCeE
Q psy11529 101 ----NRAATCVKWSPLENKFAAGSG--ARLISV--CYFESENDWWVAKHIKKPIKSTITCLDWHPNNH-LLGCGSTDFKV 171 (244)
Q Consensus 101 ----~~~v~~~~~~~~~~~l~~~~~--d~~i~i--~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~i 171 (244)
......++++|||++++++.. +..+.+ +|..+ . .....+. . ..+.|+++ .+++.+.||++
T Consensus 119 ~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v----~~i~v~~--~---~~~~p~g~~~~~~~~~dg~~ 187 (368)
T 1mda_H 119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--D----QLTKSAS--C---FHIHPGAAATHYLGSCPASL 187 (368)
T ss_dssp SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--E----EEEECSS--C---CCCEEEETTEEECCCCTTSC
T ss_pred ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--c----eEEECCC--c---eEEccCCCeEEEEEcCCCCE
Confidence 134668999999999999874 467888 88776 1 1121111 1 22445553 44556678888
Q ss_pred EEEEee
Q psy11529 172 RVFSAY 177 (244)
Q Consensus 172 ~i~d~~ 177 (244)
.+.|+.
T Consensus 188 ~~vd~~ 193 (368)
T 1mda_H 188 AASDLA 193 (368)
T ss_dssp EEEECC
T ss_pred EEEECc
Confidence 888873
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.77 E-value=1.6e-06 Score=61.75 Aligned_cols=164 Identities=10% Similarity=-0.014 Sum_probs=100.5
Q ss_pred eeeeeeccCCC--ceEEEEeCCCCCeEEEEeCCc--cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee-
Q psy11529 46 SQLDVLDGHDL--KVTGIDWAPNTNRIVTCSADR--NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS- 120 (244)
Q Consensus 46 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 120 (244)
+.+.++. |.. -...+.|+ ++.++.+.+.+| .|+.+| +++++......+ ..........+++..|+...
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD--~~Tgkv~~~~~l---~~~~FgeGit~~g~~ly~ltw 104 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVD--IESGKTLQQIEL---GKRYFGEGISDWKDKIVGLTW 104 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEEC--TTTCCEEEEEEC---CTTCCEEEEEEETTEEEEEES
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEE--CCCCcEEEEEec---CCccceeEEEEeCCEEEEEEe
Confidence 3444553 543 34789998 666666666655 899999 889986655543 23333322223445555554
Q ss_pred CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccccee
Q psy11529 121 GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL 200 (244)
Q Consensus 121 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (244)
.++.+.+||.++.+. ......+. ....++++++.|+.+..+++|.++|. .+.+.+
T Consensus 105 ~~~~v~v~D~~t~~~---~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp------------------~T~~v~ 159 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQ---VRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDP------------------ESLTPV 159 (262)
T ss_dssp SSSEEEEEETTTCCE---EEEEECSS----CCCCEEECSSCEEECCSSSEEEEECT------------------TTCSEE
T ss_pred eCCEEEEEECccCcE---EEEEECCC----CceEEecCCCEEEEECCCCeEEEEcC------------------CCCeEE
Confidence 588999999988875 22222222 22344467777777766788999998 455555
Q ss_pred EEecCCC--CCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 201 VELNNSS--SGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 201 ~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
..+.... ..-..++.+.|. +|+..+..-.+..|.+.|.++.
T Consensus 160 ~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG 202 (262)
T 3nol_A 160 RTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETG 202 (262)
T ss_dssp EEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC
T ss_pred EEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCC
Confidence 5554310 001345567876 7766655556778888887653
No 254
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.75 E-value=9e-06 Score=59.93 Aligned_cols=159 Identities=9% Similarity=0.079 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCeEEEec-CCCeEEEeeeccCCCcceeeeeecc----C--CCceEEEEe---CCCCCeEEEEe-------
Q psy11529 12 VTTHAWNNTRQQLAFTP-NNQEVHLYQYEKAANDWSQLDVLDG----H--DLKVTGIDW---APNTNRIVTCS------- 74 (244)
Q Consensus 12 v~~~~~~~~~~~l~~~~-~d~~v~v~~~~~~~~~~~~~~~~~~----~--~~~v~~~~~---~~~~~~l~~~~------- 74 (244)
-.+++|++....|..++ ..+.|..|+..+ +....+ .+.+ . ...+..+.| .|+++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~--~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKT--QSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTT--CCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCC--CeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 34788988655555555 689999999875 322223 3332 1 124689999 68877776533
Q ss_pred ------CCccEEEEeeeCC---CCCceeeEEEecc-----------CcceEEEEECCCCCeEEEeeCC-CeEEEEEeecC
Q psy11529 75 ------ADRNAYVWTQNND---DKKWKPTLVLLRI-----------NRAATCVKWSPLENKFAAGSGA-RLISVCYFESE 133 (244)
Q Consensus 75 ------~d~~i~iwd~~~~---~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~ 133 (244)
.+..+..+| +. +++......+... ...+..++..++|+..++++.. +.|...+.+..
T Consensus 92 ~g~~~~g~~~v~~~D--l~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFN--LPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp TSCCSSSCCEEEEEE--SSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccCCCCEEEEEc--CCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 157788999 66 5665444443221 1248899999999999988877 76555444333
Q ss_pred CCceEEEeee---cCCCCceeEEEecCCCCEEEEeeCCCeEEEEEee
Q psy11529 134 NDWWVAKHIK---KPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAY 177 (244)
Q Consensus 134 ~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~ 177 (244)
.. ...... .......+.|+++|+|+.|++....|.|..+|+.
T Consensus 170 ~~--~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 170 TV--STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CE--EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EE--eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 11 111111 1122357899999999988887779999999985
No 255
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.75 E-value=9.3e-06 Score=63.06 Aligned_cols=220 Identities=10% Similarity=0.038 Sum_probs=115.0
Q ss_pred CceEEEEEcCCCCeEEEecCC---C-eEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEee
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNN---Q-EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d---~-~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~ 84 (244)
.....++++++|+++++.... . .+...+... + +.....+. .-.....++++| ++.++++-..++.|+.+|
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~--~-~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d- 256 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS--G-FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYD- 256 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG--T-TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEEC-
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCC--C-eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEE-
Confidence 457889999999954443311 1 233333322 1 11111222 223346788999 666665655678899988
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee-CCCeEEEEEeecCCCce----EEEeeec--C---------CCC
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-GARLISVCYFESENDWW----VAKHIKK--P---------IKS 148 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~----~~~~~~~--~---------~~~ 148 (244)
..++.....+...........++|+|+++.|+.+. ..+.|+.++++...... ....... + .-.
T Consensus 257 -~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~ 335 (433)
T 4hw6_A 257 -PATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLW 335 (433)
T ss_dssp -TTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCS
T ss_pred -CCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEc
Confidence 66665412222122223345799999999665554 46789888876432100 0000000 0 112
Q ss_pred ceeEEEe---------cCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe
Q psy11529 149 TITCLDW---------HPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS 219 (244)
Q Consensus 149 ~v~~~~~---------~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 219 (244)
....+++ .++|+++++-...+.|+.++.. ..+........ ....+..-...... ..-.....++++
T Consensus 336 ~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G~v~t~~G~g~---~~~~G~~dG~~~~~-~~~~~P~giavd 410 (433)
T 4hw6_A 336 GPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-GRVTTYAGRGN---SREWGYVDGELRSQ-ALFNHPTSIAYD 410 (433)
T ss_dssp SEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-SEEEEEECCCT---TCSSCCBCEETTTT-CBCSSEEEEEEE
T ss_pred CCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-CCEEEEEeCCC---CCccccCCCccccc-cEeCCCcEEEEE
Confidence 4567888 6777777766667788888741 11110000000 00000000000000 002346889999
Q ss_pred -cCCCEEEEeeCCCcEEEEeCC
Q psy11529 220 -KDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 220 -~~~~~l~~~~~dg~i~vwd~~ 240 (244)
++|.++++=.....|+.++++
T Consensus 411 ~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 411 MKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEecC
Confidence 677766666667889988875
No 256
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.75 E-value=1.8e-05 Score=58.83 Aligned_cols=197 Identities=11% Similarity=0.054 Sum_probs=117.2
Q ss_pred CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC----CCe--E-EEEe-C--CccEEEEeeeCCCCC
Q psy11529 21 RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN----TNR--I-VTCS-A--DRNAYVWTQNNDDKK 90 (244)
Q Consensus 21 ~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l-~~~~-~--d~~i~iwd~~~~~~~ 90 (244)
..+++.....+-+.+||+.+ +.++.+.. +.++.+..-|+ |+. + ++.. . +++|.+|+++..++.
T Consensus 40 ~s~ii~t~k~~gL~Vydl~G-----~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLDG-----KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GCEEEEEETTTEEEEEETTS-----CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred ccEEEEEcCCCCEEEEcCCC-----cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 34555556678899999976 67777653 56777766652 322 3 3333 3 578999984334443
Q ss_pred ceeeEE----EeccCcceEEEEE--CCC-CC-eEEEeeCCCeEEEEEeecCC---CceEEEeeecCCCCceeEEEecCCC
Q psy11529 91 WKPTLV----LLRINRAATCVKW--SPL-EN-KFAAGSGARLISVCYFESEN---DWWVAKHIKKPIKSTITCLDWHPNN 159 (244)
Q Consensus 91 ~~~~~~----~~~~~~~v~~~~~--~~~-~~-~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~p~~ 159 (244)
...... .......+..+++ +|. +. ++++...++.+..|++.... ........ ....+.+..+...+..
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~-f~lgsq~EgcvvDd~~ 191 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA-FKMNSQTEGMAADDEY 191 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE-EECSSCEEEEEEETTT
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE-ecCCCCcceEEEcCCC
Confidence 211100 0011155666777 775 44 57778889999999985421 11111122 2223678899999988
Q ss_pred CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEE--ecCCC-EEEEee-CCCcE
Q psy11529 160 HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAF--SKDGN-KLCWTS-HDGSI 234 (244)
Q Consensus 160 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~--s~~~~-~l~~~~-~dg~i 234 (244)
..|+.+-++.-|..|+.+.... .+.+.+..+. ++. ...+..|++ .++++ ||++++ .+.+.
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~-------------~~~~~v~~~~~g~l--~aDvEGLai~~~~~g~gyLivSsQG~~s~ 256 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGG-------------SNGTVIDRADGRHL--TRDIEGLTIYYAADGKGYLMASSQGNSSY 256 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSC-------------SCCEEEEEBSSSSB--CSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred CeEEEecccceEEEEeCCcCCC-------------CCceEEEEecCCcc--ccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence 8999998886655555421100 1234444442 221 346888888 45666 666665 57799
Q ss_pred EEEeCC
Q psy11529 235 NVRMSQ 240 (244)
Q Consensus 235 ~vwd~~ 240 (244)
.+||.+
T Consensus 257 ~Vydr~ 262 (355)
T 3amr_A 257 AIYDRQ 262 (355)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 999986
No 257
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.73 E-value=6.4e-07 Score=73.36 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=49.5
Q ss_pred EEEEcCCCCeEEEecC-CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CC-----ccEEEEeeeC
Q psy11529 14 THAWNNTRQQLAFTPN-NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-AD-----RNAYVWTQNN 86 (244)
Q Consensus 14 ~~~~~~~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~~ 86 (244)
++++.++++++++|+. +..+.+||... +.|..+..+..... -.+++..++++.++.|+ .+ ..+.+|| .
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t--~~W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd--~ 321 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSS--DSWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS--P 321 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGG--TEEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEE--T
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcC--CceeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeC--C
Confidence 4677789999999984 45899999987 65665544432222 23455667888888887 34 5688898 5
Q ss_pred CCCCc
Q psy11529 87 DDKKW 91 (244)
Q Consensus 87 ~~~~~ 91 (244)
.++++
T Consensus 322 ~t~~W 326 (656)
T 1k3i_A 322 SSKTW 326 (656)
T ss_dssp TTTEE
T ss_pred CCCcc
Confidence 55543
No 258
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.73 E-value=1.3e-05 Score=62.27 Aligned_cols=156 Identities=11% Similarity=0.118 Sum_probs=89.7
Q ss_pred ceEEEEEcCC--CCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC---c-cEEEEee
Q psy11529 11 PVTTHAWNNT--RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD---R-NAYVWTQ 84 (244)
Q Consensus 11 ~v~~~~~~~~--~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~-~i~iwd~ 84 (244)
....++|+|+ +..|.++...+.|+.++..+ + .+..+.........++++++|+++++.... . .+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~--g---~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~- 213 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN--Q---YVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFT- 213 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTT--T---EEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEEC-
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCC--C---EEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEE-
Confidence 3568899985 34444443338899999866 3 333444345568899999999944443211 1 233333
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
.. +.......+ ..-.....++++| ++.++++-..++.|+.++..++... ..............++|+|+++.|+
T Consensus 214 -~~-~~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~--~~~~~~~~~~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 214 -RA-SGFTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT--EEEVMMDTKGSNFHIVWHPTGDWAY 288 (433)
T ss_dssp -GG-GTTCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE--EEEEECSCCSSCEEEEECTTSSEEE
T ss_pred -CC-CCeeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE--EEEeccCCCCCcccEEEeCCCCEEE
Confidence 22 222111111 1234567789999 5665555556778888877644320 1111111223345799999998555
Q ss_pred Ee-eCCCeEEEEEee
Q psy11529 164 CG-STDFKVRVFSAY 177 (244)
Q Consensus 164 ~~-~~dg~i~i~d~~ 177 (244)
.+ ...+.|+.++..
T Consensus 289 vad~~~~~I~~~~~d 303 (433)
T 4hw6_A 289 IIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEETTTTEEEEEEBC
T ss_pred EEeCCCCEEEEEeCC
Confidence 44 456789988863
No 259
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.72 E-value=2.9e-05 Score=59.39 Aligned_cols=193 Identities=10% Similarity=0.081 Sum_probs=113.0
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCCCC
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNNDDK 89 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~ 89 (244)
.-.|.+..++ .+|+.+. ...|+.+++.+ . ....+.........++|++.+..|+.+ ...+.|..++ ....
T Consensus 78 ~~~C~~~~~~-~~l~~~~-~~~I~~i~~~~--~---~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~--~~g~ 148 (386)
T 3v65_B 78 RRSCKALGPE-PVLLFAN-RIDIRQVLPHR--S---EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRAN--LNGS 148 (386)
T ss_dssp SSCEEECSSC-CEEEEEC-BSCEEEECTTS--C---CCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEE--TTSC
T ss_pred CCeECCcccc-ceeEeec-CccceeeccCC--C---cEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEe--cCCC
Confidence 3445555553 3444443 45688888876 3 222222234457899999866555544 4567888888 5554
Q ss_pred CceeeEEEeccCcceEEEEECCCCCeEEE-eeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee-C
Q psy11529 90 KWKPTLVLLRINRAATCVKWSPLENKFAA-GSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS-T 167 (244)
Q Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~ 167 (244)
... .. ..........+++.+.+..|+. -...+.|.+.+++.... .............++++|.+..|+... .
T Consensus 149 ~~~-~~-~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~----~~l~~~~l~~P~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 149 NVE-EV-VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR----KVLLWQSLEKPRAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp CEE-EE-ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC----EEEECSSCSCEEEEEEETTTTEEEEEECS
T ss_pred CcE-EE-EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce----EEeecCCCCCCcEEEEEcCCCeEEEeccC
Confidence 321 11 1222345677888876555544 44567788877665433 222222335678999999766555544 3
Q ss_pred C-CeEEEEEeeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529 168 D-FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ 240 (244)
Q Consensus 168 d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~ 240 (244)
. +.|..+++. +.....+. .. ......++++|++..|+.+. ..+.|..+|+.
T Consensus 223 ~~~~I~r~~~d-------------------G~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 223 NTPRIEASSMD-------------------GSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp SSCEEEEEETT-------------------SCSCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CCCEEEEEeCC-------------------CCCcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 3 678777752 32222222 22 44578999998776665554 45678888875
No 260
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.72 E-value=9.2e-07 Score=73.56 Aligned_cols=113 Identities=10% Similarity=0.011 Sum_probs=71.7
Q ss_pred ceEEEEeC-CCCCeEEEEeC-C----ccEEEEeeeCCCC-CceeeEEEeccCcceEEEEECCCCCeEEEeeCC-----Ce
Q psy11529 57 KVTGIDWA-PNTNRIVTCSA-D----RNAYVWTQNNDDK-KWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-----RL 124 (244)
Q Consensus 57 ~v~~~~~~-~~~~~l~~~~~-d----~~i~iwd~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~ 124 (244)
.+...+|| |||++|+.+.. + ..|+++| +.++ +..... + ......++|+||++.|+....+ ..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~d--l~~g~~~l~~~-~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKR--ISDPSQTIADK-V---SGTNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEE--TTCTTCCCCCC-E---EEECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEE--CCCCCEeCCcc-c---cCceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 67889999 99998885543 2 3599999 7777 522111 1 1124578999999888877654 24
Q ss_pred EEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC---CCeEEEEEe
Q psy11529 125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST---DFKVRVFSA 176 (244)
Q Consensus 125 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---dg~i~i~d~ 176 (244)
|..+++.+....... ............+.|+|||++|+..+. ...|+++|+
T Consensus 249 v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 249 VWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp EEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEES
T ss_pred EEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 666666554321111 111222344668899999998876653 346778887
No 261
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.70 E-value=8.5e-06 Score=61.97 Aligned_cols=144 Identities=6% Similarity=-0.065 Sum_probs=84.5
Q ss_pred CCeEEEecCCCeEEEeeeccCCCcceeeeeeccC---------CCce-EEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529 21 RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH---------DLKV-TGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK 90 (244)
Q Consensus 21 ~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~---------~~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 90 (244)
+..+++++.++.|..+|..+ + +.+...... ...+ ..+.. ++..++.++.++.+..+| ..+++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~t--G--~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d--~~tG~ 124 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADD--G--KEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALN--TSDGT 124 (376)
T ss_dssp TTEEEEECTTSEEEEEETTT--C--CEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEE--TTTCC
T ss_pred CCEEEEEcCCCeEEEEEccC--C--ceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEE--CCCCC
Confidence 45677777789999999876 4 333333321 1222 22222 356777788899999999 88888
Q ss_pred ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC-CceeEEEecCCCCEEEEeeCCC
Q psy11529 91 WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK-STITCLDWHPNNHLLGCGSTDF 169 (244)
Q Consensus 91 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~dg 169 (244)
.......... ....... .+..+++++.++.+..+|.++++..|.......... ......... +..++.++.++
T Consensus 125 ~~W~~~~~~~--~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g 198 (376)
T 3q7m_A 125 VAWQTKVAGE--ALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNG 198 (376)
T ss_dssp EEEEEECSSC--CCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTT
T ss_pred EEEEEeCCCc--eEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCC
Confidence 6544432211 1111112 145788888899999999988876443322111100 000112222 34677788899
Q ss_pred eEEEEEeee
Q psy11529 170 KVRVFSAYI 178 (244)
Q Consensus 170 ~i~i~d~~~ 178 (244)
.+..+|..+
T Consensus 199 ~l~~~d~~t 207 (376)
T 3q7m_A 199 RVSAVLMEQ 207 (376)
T ss_dssp EEEEEETTT
T ss_pred EEEEEECCC
Confidence 999999843
No 262
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.70 E-value=8.1e-06 Score=62.08 Aligned_cols=187 Identities=9% Similarity=0.049 Sum_probs=108.2
Q ss_pred CCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec
Q psy11529 20 TRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR 99 (244)
Q Consensus 20 ~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 99 (244)
++..+++++.++.|..+|..+ + +.................. +..++.++.++.+..+| ..+++.........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~t--G--~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d--~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSD--G--TVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALN--EADGAVKWTVNLDM 173 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTT--C--CEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEE--TTTCCEEEEEECCC
T ss_pred eCCEEEEEcCCCEEEEEECCC--C--CEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEE--CCCCcEEEEEeCCC
Confidence 345677777889999999876 4 4443433222211111222 44677788899999999 78887554443211
Q ss_pred cCc---ceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCC---CceeEEEecC--CCCEEEEeeCCCeE
Q psy11529 100 INR---AATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK---STITCLDWHP--NNHLLGCGSTDFKV 171 (244)
Q Consensus 100 ~~~---~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~v~~~~~~p--~~~~l~~~~~dg~i 171 (244)
... ........ +..+++++.++.+..+|..+++..|.......... ..+..+.-.| .+..++.++.++.+
T Consensus 174 ~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l 251 (376)
T 3q7m_A 174 PSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNL 251 (376)
T ss_dssp -----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCE
T ss_pred CceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEE
Confidence 110 00111111 45678888899999999988876443322111000 0000111112 24567777889999
Q ss_pred EEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 172 RVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 172 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
..+|. .+++.+..... .....+.. ++..|+.++.++.|..+|.++
T Consensus 252 ~~~d~------------------~tG~~~w~~~~-----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t 296 (376)
T 3q7m_A 252 TALDL------------------RSGQIMWKREL-----GSVNDFIV--DGNRIYLVDQNDRVMALTIDG 296 (376)
T ss_dssp EEEET------------------TTCCEEEEECC-----CCEEEEEE--ETTEEEEEETTCCEEEEETTT
T ss_pred EEEEC------------------CCCcEEeeccC-----CCCCCceE--ECCEEEEEcCCCeEEEEECCC
Confidence 99998 56766655543 22344443 455677777888999988765
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.69 E-value=4.4e-05 Score=58.41 Aligned_cols=196 Identities=9% Similarity=-0.016 Sum_probs=113.6
Q ss_pred CCceEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeC
Q psy11529 9 INPVTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNN 86 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~ 86 (244)
......++|++.+..|. +-...+.|+.+++.+ . .....+.........+++++.+..| ++-...+.|.+.+ +
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g--~--~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~--~ 188 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNG--S--NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN--L 188 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--C--CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECB--T
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCC--C--CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEe--C
Confidence 34567899997655554 445578888888876 3 1222222223345678888755554 4444567888888 5
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-C-CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-A-RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC 164 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 164 (244)
.... ...+ ....-.....+++.|.+..|+.+.. . +.|..++++.... .......-.....++++|++..|+.
T Consensus 189 dg~~-~~~l-~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----~~~~~~~~~~PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 189 DGAH-RKVL-LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----RIIADTHLFWPNGLTIDYAGRRMYW 262 (386)
T ss_dssp TSCS-CEEE-ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEECSSCSCEEEEEEEGGGTEEEE
T ss_pred CCCc-eEEe-ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc----EEEEECCCCCeeeEEEeCCCCEEEE
Confidence 4433 2222 2233456789999997776666554 3 5677777665433 2222222346789999987666555
Q ss_pred ee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529 165 GS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM 238 (244)
Q Consensus 165 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 238 (244)
+. ..+.|..+|+. .......+... ......+++ ..+.++.+-...+.|..++
T Consensus 263 aD~~~~~I~~~d~d------------------G~~~~~~~~~~---~~~P~giav-~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 263 VDAKHHVIERANLD------------------GSHRKAVISQG---LPHPFAITV-FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EETTTTEEEEECTT------------------SCSCEEEECSS---CSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred EECCCCEEEEEeCC------------------CCeeEEEEECC---CCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence 54 45788888862 11111112222 334567777 3444444545566777776
No 264
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.68 E-value=4e-06 Score=61.80 Aligned_cols=169 Identities=9% Similarity=0.019 Sum_probs=107.4
Q ss_pred eccCCCceEEEEeCCCCCeEEEEe-CCccEEEEeeeCCCCCceeeEEEec----c--CcceEEEEE---CCCCCeEEEee
Q psy11529 51 LDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWTQNNDDKKWKPTLVLLR----I--NRAATCVKW---SPLENKFAAGS 120 (244)
Q Consensus 51 ~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~----~--~~~v~~~~~---~~~~~~l~~~~ 120 (244)
+......-.+++|++....|..++ ..++|..|| ...+..... .+.. . ...+..+.| .|+++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~--~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~ 84 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYN--PKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK 84 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEEC--TTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEc--CCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence 333344456789988555555554 689999999 654543222 2221 1 124689999 68877777544
Q ss_pred -------------CCCeEEEEEee---cCCCceEEEeeec--C-------CCCceeEEEecCCCCEEEEeeCC-CeEEEE
Q psy11529 121 -------------GARLISVCYFE---SENDWWVAKHIKK--P-------IKSTITCLDWHPNNHLLGCGSTD-FKVRVF 174 (244)
Q Consensus 121 -------------~d~~i~i~d~~---~~~~~~~~~~~~~--~-------~~~~v~~~~~~p~~~~l~~~~~d-g~i~i~ 174 (244)
.+..+..||+. +++..+....... . .......++..++|+..++++.. +.|...
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV 164 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence 26779999998 6665333321110 0 11358899999999999988877 777666
Q ss_pred EeeecccccCCCCCCCCccccccceeEEecCC---CCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 175 SAYIKDIESAPQSTNWGSKSTLGNCLVELNNS---SSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 175 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
+. .++.+..+... .......+.++++|+|+.|++....|.|..+|+++
T Consensus 165 ~p-------------------dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 165 SA-------------------DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CT-------------------TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eC-------------------CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 64 23322222111 00033467999999999888776799999999763
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.67 E-value=4.8e-05 Score=57.35 Aligned_cols=155 Identities=8% Similarity=0.010 Sum_probs=95.2
Q ss_pred CceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeCC
Q psy11529 10 NPVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNND 87 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~ 87 (244)
.....++|++.+..|..+ ...+.|+.+++.+ .. ....+.........+++.+.+..| ++-...+.|.+.+ ..
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g--~~--~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~--~d 146 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNG--SN--VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN--LD 146 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CS--CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE--TT
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCC--CC--ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEc--CC
Confidence 446789999765555544 4568888888876 31 112222223345788998855544 4445567899988 54
Q ss_pred CCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-C-CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-A-RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
... ... .....-.....++++|.+..|+.... . +.|..++++.... .......-.....++++|++..|+.+
T Consensus 147 G~~-~~~-l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~----~~~~~~~~~~PnGla~d~~~~~lY~a 220 (349)
T 3v64_C 147 GAH-RKV-LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----RIIADTHLFWPNGLTIDYAGRRMYWV 220 (349)
T ss_dssp SCS-CEE-EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EESCCSSCSCEEEEEEETTTTEEEEE
T ss_pred CCc-eEE-EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc----EEEEECCCCCcceEEEeCCCCEEEEE
Confidence 433 222 22233456789999997666655544 3 6777777665433 12222223467899999877666555
Q ss_pred e-CCCeEEEEEe
Q psy11529 166 S-TDFKVRVFSA 176 (244)
Q Consensus 166 ~-~dg~i~i~d~ 176 (244)
. ..+.|..+|+
T Consensus 221 D~~~~~I~~~~~ 232 (349)
T 3v64_C 221 DAKHHVIERANL 232 (349)
T ss_dssp ETTTTEEEEEET
T ss_pred ECCCCEEEEEeC
Confidence 4 4678888886
No 266
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.63 E-value=8e-07 Score=72.81 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=76.9
Q ss_pred EEEEcC-CCCeEEEecCCC-----------eEEEeeeccCCCcceeeeeecc-CCCceEEEEeCCCCCeEEEEeC-CccE
Q psy11529 14 THAWNN-TRQQLAFTPNNQ-----------EVHLYQYEKAANDWSQLDVLDG-HDLKVTGIDWAPNTNRIVTCSA-DRNA 79 (244)
Q Consensus 14 ~~~~~~-~~~~l~~~~~d~-----------~v~v~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d~~i 79 (244)
++++.+ +++.++.|+.+. .+.+||... +.+..+..+.. +.....++++..+++.++.|+. +..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t--~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST--GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT--CCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC--CcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence 556677 888888886532 688899877 65665554432 2333445778889999998884 5689
Q ss_pred EEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee-CC-----CeEEEEEeecCC
Q psy11529 80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS-GA-----RLISVCYFESEN 134 (244)
Q Consensus 80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----~~i~i~d~~~~~ 134 (244)
.+|| ..++++.....+. ....-.+++..++++.++.|+ .+ ..+.+||..+.+
T Consensus 268 ~~yd--~~t~~W~~~~~~~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 268 SLYD--SSSDSWIPGPDMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEE--GGGTEEEECCCCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EEec--CcCCceeECCCCC-ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 9999 6666654432221 122234566777899999888 34 468888877653
No 267
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.62 E-value=5.2e-06 Score=64.41 Aligned_cols=154 Identities=10% Similarity=0.070 Sum_probs=92.7
Q ss_pred eEEEEeCC-CCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC----C-eEEEEEee
Q psy11529 58 VTGIDWAP-NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA----R-LISVCYFE 131 (244)
Q Consensus 58 v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~-~i~i~d~~ 131 (244)
...++++| ++..|+.+...+.|+.+| ...+... .+.........++|+++++.|+++... . .+.+++ .
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id--~~~~~v~---~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~ 212 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLID--FEKEYVS---TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-R 212 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEE--TTTTEEE---EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-G
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEE--CCCCEEE---EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-C
Confidence 46888998 455566665557888888 6655422 222345668899999999976666542 1 233333 2
Q ss_pred cCCCceEEEeeecCCCCceeEEEecC-CCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCC
Q psy11529 132 SENDWWVAKHIKKPIKSTITCLDWHP-NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGG 210 (244)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (244)
.+.... .... . .......++++| +|.++++-..++.|..++.. ............ .
T Consensus 213 ~g~~~~-~~~l-~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~------------------~~~~~~~~~~~~--~ 269 (430)
T 3tc9_A 213 ESGFKV-ITEL-T-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFT------------------TQETTPLFTIQD--S 269 (430)
T ss_dssp GGTSCS-EEEE-E-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETT------------------TTEEEEEEECSS--S
T ss_pred CCceee-eeee-c-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECC------------------CCcEEEEEEcCC--C
Confidence 222210 0111 1 123567888999 67666666677899999972 222211122110 3
Q ss_pred CCeEEEEEecCCCEEEEe-eCCCcEEEEeCC
Q psy11529 211 GWIHSVAFSKDGNKLCWT-SHDGSINVRMSQ 240 (244)
Q Consensus 211 ~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~ 240 (244)
.....++|+|+|++|+.. ...+.|..++.+
T Consensus 270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 457899999999955544 456788887754
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.61 E-value=7.9e-05 Score=57.27 Aligned_cols=184 Identities=16% Similarity=0.106 Sum_probs=110.0
Q ss_pred eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCCCCC--ceeeEEEec
Q psy11529 23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNNDDKK--WKPTLVLLR 99 (244)
Q Consensus 23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~--~~~~~~~~~ 99 (244)
+|+.+. ...|+..++.. .. ...+......+..++|++.+..|+.+ ...+.|+.++ +.... .........
T Consensus 85 ~ll~~~-~~~I~~i~l~~--~~---~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~--~~g~~~~~~~~~~~~~ 156 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDR--SE---YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ--LDRAHGVSSYDTVISR 156 (400)
T ss_dssp EEEEEE-TTEEEEECTTS--CS---CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEE--C------CCCEEEECS
T ss_pred eeEEec-cceeEEEccCC--cc---eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEE--cccCCCCCcceEEEeC
Confidence 444443 46888888876 32 22223345677899999866666555 4467888888 44321 111222222
Q ss_pred cCcceEEEEECCCCCeEE-EeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC--CCeEEEEEe
Q psy11529 100 INRAATCVKWSPLENKFA-AGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST--DFKVRVFSA 176 (244)
Q Consensus 100 ~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--dg~i~i~d~ 176 (244)
.......+++.+.+..|+ +-...+.|.+.+++.... .............++++|.+..|+.... .+.|...++
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~----~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE----EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce----EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 445678899988544444 444577888887765543 2222223346789999997666655442 367887776
Q ss_pred eecccccCCCCCCCCccccccceeEEe-cCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529 177 YIKDIESAPQSTNWGSKSTLGNCLVEL-NNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ 240 (244)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~ 240 (244)
. +.....+ ... -.....+++++++..|+.+. ..+.|..+|++
T Consensus 233 d-------------------G~~~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 233 N-------------------GVDIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp T-------------------SCSCEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C-------------------CCccEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 2 3222222 222 45678999998877776664 45678888775
No 269
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.59 E-value=2.5e-05 Score=55.77 Aligned_cols=163 Identities=7% Similarity=-0.126 Sum_probs=100.9
Q ss_pred eeeeeccCC--CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCe
Q psy11529 47 QLDVLDGHD--LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL 124 (244)
Q Consensus 47 ~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 124 (244)
.+.++. |. .....+.|+. +.++.+.+.+|.|+++| +++++..... +.. ......+++..+ +.....-.++.
T Consensus 45 Vv~~~p-hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD--~~Tgkv~~~~-l~~-~~FgeGit~~g~-~Ly~ltw~~~~ 117 (268)
T 3nok_A 45 IIREYP-HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLS--LESAQPVWME-RLG-NIFAEGLASDGE-RLYQLTWTEGL 117 (268)
T ss_dssp EEEEEE-CCTTCCEEEEEEET-TEEEEEETTTTEEEECC--SSCSSCSEEE-ECT-TCCEEEEEECSS-CEEEEESSSCE
T ss_pred EEEEEc-CCCccccceEEEEC-CEEEEEcCCCCEEEEEE--CCCCcEEeEE-CCC-CcceeEEEEeCC-EEEEEEccCCE
Confidence 344453 44 3347888984 56667777888999999 8888876665 332 212233555432 33444446889
Q ss_pred EEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec
Q psy11529 125 ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN 204 (244)
Q Consensus 125 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (244)
+.+||.++.+. ......+ ..-..++ +|++.|+.+..+++|.++|. .+.+.+..+.
T Consensus 118 v~V~D~~Tl~~---~~ti~~~--~eGwGLt--~Dg~~L~vSdGs~~l~~iDp------------------~T~~v~~~I~ 172 (268)
T 3nok_A 118 LFTWSGMPPQR---ERTTRYS--GEGWGLC--YWNGKLVRSDGGTMLTFHEP------------------DGFALVGAVQ 172 (268)
T ss_dssp EEEEETTTTEE---EEEEECS--SCCCCEE--EETTEEEEECSSSEEEEECT------------------TTCCEEEEEE
T ss_pred EEEEECCcCcE---EEEEeCC--CceeEEe--cCCCEEEEECCCCEEEEEcC------------------CCCeEEEEEE
Confidence 99999988765 2222222 1223333 56777777777889999998 5556665554
Q ss_pred CCCC--CCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 205 NSSS--GGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 205 ~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
.... .-..++.+.|. +|++.+..-.+..|.+.|.++.
T Consensus 173 V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG 211 (268)
T 3nok_A 173 VKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATG 211 (268)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTC
T ss_pred eCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence 3200 01245677877 7765555556778988888753
No 270
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.57 E-value=1.1e-05 Score=66.20 Aligned_cols=159 Identities=8% Similarity=0.027 Sum_probs=97.4
Q ss_pred EEEeCCCCCeEEEEeCCc-------------------cEEEEeeeCCCCCceeeEEEeccC-------cceEEEEECCCC
Q psy11529 60 GIDWAPNTNRIVTCSADR-------------------NAYVWTQNNDDKKWKPTLVLLRIN-------RAATCVKWSPLE 113 (244)
Q Consensus 60 ~~~~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~ 113 (244)
.++++|+...++.++.++ .|..+| ..+++.+.......+. .......+..+|
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD--~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR--PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC--TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc--CCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence 467888778888777665 388888 8899876666543232 222222222355
Q ss_pred C---eEEEeeCCCeEEEEEeecCCCceEEEeee-------c-CCCC------------------------ceeEEEecCC
Q psy11529 114 N---KFAAGSGARLISVCYFESENDWWVAKHIK-------K-PIKS------------------------TITCLDWHPN 158 (244)
Q Consensus 114 ~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~-~~~~------------------------~v~~~~~~p~ 158 (244)
+ .++.++.+|.+.++|.++++..+...... . .... .-..++++|+
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~ 391 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG 391 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence 4 68889999999999988887632111100 0 0000 0112677887
Q ss_pred CCEEEEee------------------------------------CCCeEEEEEeeecccccCCCCCCCCccccccceeEE
Q psy11529 159 NHLLGCGS------------------------------------TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVE 202 (244)
Q Consensus 159 ~~~l~~~~------------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (244)
..+++... .+|.|..||+ .+++.+-.
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~------------------~tG~~~W~ 453 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDP------------------VKQKAAWK 453 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEET------------------TTTEEEEE
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeC------------------CCCcEEEE
Confidence 66655422 2256666776 56666655
Q ss_pred ecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 203 LNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 203 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
.... .+.....+...+.+++.++.|+.++.||.++-
T Consensus 454 ~~~~----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 454 VPYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp EEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ccCC----CCCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence 5442 23333444557778888999999999998753
No 271
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.53 E-value=8.9e-05 Score=62.20 Aligned_cols=199 Identities=9% Similarity=0.004 Sum_probs=122.6
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec----cCCCceEEEEeCCCCCeEEEEeCCccEEEEee
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD----GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 84 (244)
...|.++...++|.+. .|+.++-|..|+... +.+....... -....|.++...++|... .|+.++-+..|+
T Consensus 309 ~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~--~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~- 383 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIR--NRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYN- 383 (795)
T ss_dssp SSCEEEEEECTTSCEE-EEESSSCEEEECGGG--GSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEEC-
T ss_pred CCcEEEEEEeCCcCEE-EEECCCCeEEeCCCc--ccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEc-
Confidence 4679999999888755 455667788888765 3222221111 024569999998888754 466677799999
Q ss_pred eCCCCCceeeEEEe------ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeec----CCCCceeEEE
Q psy11529 85 NNDDKKWKPTLVLL------RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKK----PIKSTITCLD 154 (244)
Q Consensus 85 ~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~v~~~~ 154 (244)
..++......... -....|.++...++++.|.+|+.++-+..+|.++++. ..... .....|.++.
T Consensus 384 -~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~----~~~~~~~~~l~~~~v~~i~ 458 (795)
T 4a2l_A 384 -PITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV----ENFNQRNSQLVNENVYAIL 458 (795)
T ss_dssp -TTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE----EEECTTTSCCSCSCEEEEE
T ss_pred -CCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE----EEeecCCCCcCCCeeEEEE
Confidence 6665532221100 1235688999888887577778777788888776542 12111 1235788999
Q ss_pred ecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC----CCCCCCeEEEEEecCCCEEEEeeC
Q psy11529 155 WHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS----SSGGGWIHSVAFSKDGNKLCWTSH 230 (244)
Q Consensus 155 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~ 230 (244)
..++|++.+. +.+ -+.+||... ++. ..+... .-....|.++...++|++.+...
T Consensus 459 ~d~~g~lwig-t~~-Gl~~~~~~~------------------~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~- 516 (795)
T 4a2l_A 459 PDGEGNLWLG-TLS-ALVRFNPEQ------------------RSF-TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE- 516 (795)
T ss_dssp ECSSSCEEEE-ESS-CEEEEETTT------------------TEE-EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-
T ss_pred ECCCCCEEEE-ecC-ceeEEeCCC------------------CeE-EEccccccccccCCceEEEEEECCCCCEEEEeC-
Confidence 8888875554 344 488888632 211 111100 00045788999988888665443
Q ss_pred CCcEEEEeCC
Q psy11529 231 DGSINVRMSQ 240 (244)
Q Consensus 231 dg~i~vwd~~ 240 (244)
+-|..||.+
T Consensus 517 -~Gl~~~~~~ 525 (795)
T 4a2l_A 517 -EGLSVFKQE 525 (795)
T ss_dssp -SCEEEEEEE
T ss_pred -CceEEEeCC
Confidence 447777654
No 272
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.53 E-value=3.4e-05 Score=54.47 Aligned_cols=164 Identities=7% Similarity=-0.054 Sum_probs=97.6
Q ss_pred eeeeeeccCC--CceEEEEeCCCCCeEEEEeCC--ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEE-ee
Q psy11529 46 SQLDVLDGHD--LKVTGIDWAPNTNRIVTCSAD--RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAA-GS 120 (244)
Q Consensus 46 ~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~ 120 (244)
+.+.++. |. .-...+.|++ +.++.+.+.+ ..|+.+| +.+++......+.... .-..+++. ++.|+. .-
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD--~~tgkv~~~~~l~~~~-fgeGi~~~--~~~ly~ltw 82 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVD--LETGRILQRAEVPPPY-FGAGIVAW--RDRLIQLTW 82 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEE--TTTCCEEEEEECCTTC-CEEEEEEE--TTEEEEEES
T ss_pred EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEE--CCCCCEEEEEeCCCCc-ceeEEEEe--CCEEEEEEe
Confidence 4455553 54 4567899986 5555666654 4899999 8899866555432211 11233443 344444 44
Q ss_pred CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCcccccccee
Q psy11529 121 GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL 200 (244)
Q Consensus 121 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (244)
.++.+.+||.++.+. ......+. .-..++ ++++.|+.+..++.|.++|. .+.+.+
T Consensus 83 ~~~~v~v~D~~tl~~---~~ti~~~~--~Gwglt--~dg~~L~vSdgs~~l~~iDp------------------~t~~~~ 137 (243)
T 3mbr_X 83 RNHEGFVYDLATLTP---RARFRYPG--EGWALT--SDDSHLYMSDGTAVIRKLDP------------------DTLQQV 137 (243)
T ss_dssp SSSEEEEEETTTTEE---EEEEECSS--CCCEEE--ECSSCEEEECSSSEEEEECT------------------TTCCEE
T ss_pred eCCEEEEEECCcCcE---EEEEeCCC--CceEEe--eCCCEEEEECCCCeEEEEeC------------------CCCeEE
Confidence 588999999988765 22222222 223443 56776776667889999998 455555
Q ss_pred EEecCCC--CCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 201 VELNNSS--SGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 201 ~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
..+.... ..-..++.+.|. +|+..+..-.+..|.+.|.++.
T Consensus 138 ~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG 180 (243)
T 3mbr_X 138 GSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASG 180 (243)
T ss_dssp EEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTC
T ss_pred EEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCC
Confidence 5554310 001345667765 6765555545668888877653
No 273
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.52 E-value=0.00025 Score=59.47 Aligned_cols=199 Identities=8% Similarity=-0.004 Sum_probs=117.1
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec--cCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeC
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD--GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 86 (244)
...|.++...++|+.|.+|+.++-|.+++..+ +.+....... .....|.++...++|...+.. . +-+.+|| .
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~--~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~--~ 478 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS--GQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFN--P 478 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTT--CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEE--T
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCC--CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEe--C
Confidence 46788999888888455666767799999876 3222221100 134678999998888765544 4 4588888 6
Q ss_pred CCCCceeeEEE----eccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEe--e-ecCCCCceeEEEecCCC
Q psy11529 87 DDKKWKPTLVL----LRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKH--I-KKPIKSTITCLDWHPNN 159 (244)
Q Consensus 87 ~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~-~~~~~~~v~~~~~~p~~ 159 (244)
.+++....... .-....|.++...++|+..+. +. +-+..|+.++... .... . .......|.++...++|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g 554 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG-GE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNG 554 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE-ES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTS
T ss_pred CCCeEEEccccccccccCCceEEEEEECCCCCEEEE-eC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCC
Confidence 66543221110 012356889999988875554 44 4477888776531 1000 0 01123578899999998
Q ss_pred CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC-CCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529 160 HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS-SGGGWIHSVAFSKDGNKLCWTSHDGSINVRM 238 (244)
Q Consensus 160 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 238 (244)
++.+. +.. -|..||.. .. ....+.... -....|.++...++|++.+++ . +-|..||
T Consensus 555 ~lWig-T~~-Gl~~~d~~------------------~~-~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~ 611 (795)
T 4a2l_A 555 IIWVG-TRE-GFYCFNEK------------------DK-QIKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFN 611 (795)
T ss_dssp CEEEE-ESS-CEEEEETT------------------TT-EEEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEE
T ss_pred CEEEE-eCC-CceeECCC------------------CC-cEEEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEc
Confidence 75554 334 47788862 22 222221110 004468888888888866554 3 3455666
Q ss_pred CC
Q psy11529 239 SQ 240 (244)
Q Consensus 239 ~~ 240 (244)
.+
T Consensus 612 ~~ 613 (795)
T 4a2l_A 612 PE 613 (795)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.52 E-value=0.00012 Score=54.34 Aligned_cols=183 Identities=16% Similarity=0.108 Sum_probs=109.0
Q ss_pred eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCCCC---CceeeEEEe
Q psy11529 23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNNDDK---KWKPTLVLL 98 (244)
Q Consensus 23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~---~~~~~~~~~ 98 (244)
+|+.+. ...|+..++.. .. ....+. ......+++|++.+..|+.+ ...+.|..++ .... ... .....
T Consensus 3 ~ll~~~-~~~I~~i~~~~--~~--~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~--~~g~~~~~~~-~~~~~ 73 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDR--SE--YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQ--LDRAHGVSSY-DTVIS 73 (316)
T ss_dssp EEEEEC-BSSEEEEETTS--CC--CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEE--C--------C-EEEEC
T ss_pred EEEEEC-CCeEEEEECCC--cc--eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEE--CCCCCCCccc-EEEEe
Confidence 344544 35689899877 32 222233 34567899999866655544 4468899988 5441 111 11122
Q ss_pred ccCcceEEEEECCCCCeEE-EeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-C-CeEEEEE
Q psy11529 99 RINRAATCVKWSPLENKFA-AGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-D-FKVRVFS 175 (244)
Q Consensus 99 ~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d-g~i~i~d 175 (244)
..-.....+++.+.+..|+ +-...+.|.+++++.... .............++++|.+..|+.+.. . +.|..++
T Consensus 74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~----~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce----EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 2234567899987555554 445678899988765432 1222222356789999997665555443 2 6788777
Q ss_pred eeecccccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529 176 AYIKDIESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ 240 (244)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~ 240 (244)
+ .+.....+. .. -.....++++|++..|+.+. ..+.|..+|++
T Consensus 150 ~-------------------dG~~~~~~~~~~---~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 150 L-------------------NGVDIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp T-------------------TSCCEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C-------------------CCCCeEEEEECC---CCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 5 233333332 22 45678999999877666554 45688888875
No 275
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.47 E-value=2.2e-05 Score=63.23 Aligned_cols=76 Identities=9% Similarity=-0.091 Sum_probs=46.2
Q ss_pred EEeCCCCCeEEEEeCC----------------ccEEEEeeeCCCCCceeeEEEeccCc-------ceEEEEECCCCC---
Q psy11529 61 IDWAPNTNRIVTCSAD----------------RNAYVWTQNNDDKKWKPTLVLLRINR-------AATCVKWSPLEN--- 114 (244)
Q Consensus 61 ~~~~~~~~~l~~~~~d----------------~~i~iwd~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~--- 114 (244)
+++.++...++.+..+ +.|..+| ..+++.+.......+.. ...-+...++|+
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald--~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~ 317 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRD--LDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTP 317 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEE--TTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEE
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEe--cCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEE
Confidence 4566655566555432 2588888 88888666555432211 111122224663
Q ss_pred eEEEeeCCCeEEEEEeecCCCceE
Q psy11529 115 KFAAGSGARLISVCYFESENDWWV 138 (244)
Q Consensus 115 ~l~~~~~d~~i~i~d~~~~~~~~~ 138 (244)
.++.++.+|.+.++|.++++..+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~ 341 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEeCCCcEEEEEECCCCCEEee
Confidence 577788899999999888876443
No 276
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.46 E-value=0.00021 Score=57.67 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=51.3
Q ss_pred CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE
Q psy11529 122 ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV 201 (244)
Q Consensus 122 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (244)
++.|..||+.+++..|...... ....-.....+.+++.++.||.++.||. .+++.+.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-----~~~~g~~~tagglvf~g~~dg~l~A~D~------------------~tG~~lW 521 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-----PLWAGVLATAGNLVFTGTGDGYFKAFDA------------------KSGKELW 521 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-----CCCSCCEEETTTEEEEECTTSEEEEEET------------------TTCCEEE
T ss_pred cceEEEEECCCCCEEEEecCCC-----CCcccceEeCCCEEEEECCCCcEEEEEC------------------CCCCEEE
Confidence 5778889988887655443321 1111112224667888999999999999 7888888
Q ss_pred EecCCCCCCCCeEEEEEecCCCEEE
Q psy11529 202 ELNNSSSGGGWIHSVAFSKDGNKLC 226 (244)
Q Consensus 202 ~~~~~~~~~~~v~~~~~s~~~~~l~ 226 (244)
+++... .....-+.|..+|+..+
T Consensus 522 ~~~~~~--g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 522 KFQTGS--GIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EEECSS--CCCSCCEEEEETTEEEE
T ss_pred EecCCC--CcccCceEEEECCEEEE
Confidence 887641 11122367778888433
No 277
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.44 E-value=0.0002 Score=53.41 Aligned_cols=197 Identities=11% Similarity=0.118 Sum_probs=107.3
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEE-EeeeCCC
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYV-WTQNNDD 88 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i-wd~~~~~ 88 (244)
+.+..+.+.++++.++++. ++.| |...+.+..++.+. ......+..+++.+++.+++.+. ++.+.. .| ...
T Consensus 122 ~~~~~i~~~~~~~~~~~~~-~g~v--~~S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d--~gG 193 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITN-VGAI--YRTKDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWE--PGQ 193 (327)
T ss_dssp SCEEEEEEEETTEEEEEET-TCCE--EEESSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEEET-TSSEEEEEC--TTC
T ss_pred CCeEEEEEECCCCEEEEeC-CccE--EEEcCCCCCCEEee--cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeC--CCC
Confidence 4567788877777776664 4543 33332223444433 23456788999999888777664 444433 34 112
Q ss_pred CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeee-cCCCCceeEEEecCCCCEEEEeeC
Q psy11529 89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK-KPIKSTITCLDWHPNNHLLGCGST 167 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~ 167 (244)
..+... .......+..+.+.+++..+ .++.+|.+.+.+.+.+.. +...... ......+.++.+.|++.+++++.
T Consensus 194 ~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t-W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~- 268 (327)
T 2xbg_A 194 TAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN-WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG- 268 (327)
T ss_dssp SSCEEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE-ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-
T ss_pred CceeEC--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe-eEeccCCcccCCcceEEEEecCCCEEEEEeC-
Confidence 233222 12345678899999988655 445677776643121211 1111110 11223588899998887766654
Q ss_pred CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529 168 DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS 239 (244)
Q Consensus 168 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 239 (244)
+|.|. +.. ..++.-..+.........+.++.|.++++ ++.++.+|.|.-++-
T Consensus 269 ~g~i~-~S~------------------DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 269 AGALL-CSQ------------------DGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp TTCEE-EES------------------STTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CCeEE-EeC------------------CCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 66653 222 11222222221000034578888876665 555667898877764
No 278
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.44 E-value=1.8e-05 Score=65.00 Aligned_cols=184 Identities=11% Similarity=0.073 Sum_probs=110.7
Q ss_pred EEEEcCCCCeEEEecCCC-------------------eEEEeeeccCCCcceeeeeecc--CC-------CceEEEEeCC
Q psy11529 14 THAWNNTRQQLAFTPNNQ-------------------EVHLYQYEKAANDWSQLDVLDG--HD-------LKVTGIDWAP 65 (244)
Q Consensus 14 ~~~~~~~~~~l~~~~~d~-------------------~v~v~~~~~~~~~~~~~~~~~~--~~-------~~v~~~~~~~ 65 (244)
.+++.|++.++++++.++ .|..+|..+ + +....++. |. .+.....+..
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t--G--~~~W~~~~~~~~~wd~~~~~~~~~~d~~~ 309 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT--G--KLAWHYQVTPGDSWDFTATQQITLAELNI 309 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT--C--CEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC--C--ceeeEeecCCCccccccCCCCcEEEEecc
Confidence 467888888888887665 388888877 5 44444432 22 2222223333
Q ss_pred CCC---eEEEEeCCccEEEEeeeCCCCCceeeEEEec---------cC-cc------------------------eEEEE
Q psy11529 66 NTN---RIVTCSADRNAYVWTQNNDDKKWKPTLVLLR---------IN-RA------------------------ATCVK 108 (244)
Q Consensus 66 ~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~~-~~------------------------v~~~~ 108 (244)
+|+ .++.++.+|.++++| ..+++.+....... .. .. -..++
T Consensus 310 ~G~~~~~v~~~~~~G~l~~lD--~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a 387 (668)
T 1kv9_A 310 DGKPRKVLMQAPKNGFFYVLD--RTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMS 387 (668)
T ss_dssp TTEEEEEEEECCTTSEEEEEE--TTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCE
T ss_pred CCcEEEEEEEECCCCEEEEEE--CCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcce
Confidence 564 688889999999999 88888653221110 00 00 01256
Q ss_pred ECCCCCeEEEe------------------------------------eCCCeEEEEEeecCCCceEEEeeecCCCCceeE
Q psy11529 109 WSPLENKFAAG------------------------------------SGARLISVCYFESENDWWVAKHIKKPIKSTITC 152 (244)
Q Consensus 109 ~~~~~~~l~~~------------------------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 152 (244)
++|+...+++. ..++.|..||..+++..|..... .....
T Consensus 388 ~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-----~~~~~ 462 (668)
T 1kv9_A 388 FNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-----THWNG 462 (668)
T ss_dssp EETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-----SSCCC
T ss_pred ECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-----CCCcC
Confidence 77775555431 12378999999988764444321 22233
Q ss_pred EEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEe
Q psy11529 153 LDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWT 228 (244)
Q Consensus 153 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~ 228 (244)
..+...+.++++++.||.++.||. .+++.+..+.... .....-+.+..+|+ +++.+
T Consensus 463 ~~~~t~gg~vf~g~~dg~l~a~d~------------------~tG~~l~~~~~~~--~~~~~p~~~~~~G~~yva~~ 519 (668)
T 1kv9_A 463 GTLSTAGNLVFQGTAAGQMHAYSA------------------DKGEALWQFEAQS--GIVAAPMTFELAGRQYVAIM 519 (668)
T ss_dssp CEEEETTTEEEEECTTSEEEEEET------------------TTCCEEEEEECSS--CCCSCCEEEEETTEEEEEEE
T ss_pred ceeEeCCCEEEEECCcccchhhhh------------------hcChhheEecCCC--CcccCceEEEECCEEEEEEE
Confidence 344456778889999999999998 6788887776541 11112344556777 44443
No 279
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.44 E-value=0.00045 Score=57.67 Aligned_cols=185 Identities=16% Similarity=0.088 Sum_probs=107.7
Q ss_pred eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEE-EEeCCccEEEEeeeCCCCCc--eeeEEEec
Q psy11529 23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV-TCSADRNAYVWTQNNDDKKW--KPTLVLLR 99 (244)
Q Consensus 23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~--~~~~~~~~ 99 (244)
+|+.+. ...|+..++.. . ....+......+.+++|++....|+ +-...+.|+.++ +..... .....+..
T Consensus 397 ~Ll~an-~~~Ir~i~l~~--~---~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~--l~g~~~~~~~~~vi~~ 468 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDR--S---EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ--LDRAHGVSSYDTVISR 468 (791)
T ss_dssp EEEEEC-BSSEEEECTTS--C---CCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEE--C--------CEEEECS
T ss_pred cccccc-ccceeEeeccC--C---cceeeecCCCceEEEeecccCCeeEEeeccceeEEEEe--ccCCCCCcceeEEEec
Confidence 444443 45688888766 3 2222222345678999998555554 444467788888 443211 11222222
Q ss_pred cCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC--CCeEEEEEe
Q psy11529 100 INRAATCVKWSPLENKFAAG-SGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST--DFKVRVFSA 176 (244)
Q Consensus 100 ~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--dg~i~i~d~ 176 (244)
.......|++.+.+..|+.+ ...+.|.+.+++.... .............|+++|.+.+|+.... .+.|...++
T Consensus 469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~----~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE----EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 44567789998877555554 4577898888875543 2222223356889999997666655542 267887776
Q ss_pred eecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529 177 YIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ 240 (244)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~ 240 (244)
.+.....+.... -.....|++++.+..|+.+. ....|...++.
T Consensus 545 -------------------dG~~~~~lv~~~--l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 545 -------------------NGVDIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp -------------------TSCCEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -------------------CCCceEEEEeCC--CCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 233333332210 45678899998766666654 34567777764
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.40 E-value=0.00026 Score=52.55 Aligned_cols=202 Identities=10% Similarity=-0.078 Sum_probs=113.5
Q ss_pred CceEEEEEcCCCCeEE-EecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeCC
Q psy11529 10 NPVTTHAWNNTRQQLA-FTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNND 87 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~-~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~ 87 (244)
....+++|++++..|. +-...+.|..+++.+..........+...-.....+++++.+..| ++-...+.|.+.+ ..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~--~~ 107 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD--TK 107 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE--TT
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEe--CC
Confidence 4567899998665554 445568899998864100001111222222345788998755544 4445678899999 55
Q ss_pred CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC--CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA--RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
... ...+ ....-.....++++|.+..|+.+... +.|...+++.... .......-.....++++|++..|+.+
T Consensus 108 g~~-~~~~-~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~----~~~~~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 108 GVK-RKTL-FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVTENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp SSS-EEEE-EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE----EEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CCc-eEEE-EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe----EEEEECCCCCceEEEEeccCCEEEEE
Confidence 433 2222 22234567899999976666655543 5777777654332 12222223567899999987766655
Q ss_pred e-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529 166 S-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS 239 (244)
Q Consensus 166 ~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 239 (244)
. ..+.|..+|+... ..+.+...... ......+++. .+.++++-...+.|..++.
T Consensus 182 D~~~~~I~~~d~dg~----------------~~~~~~~~~~~---~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 182 DSKLHSISSIDVNGG----------------NRKTILEDEKR---LAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp ETTTTEEEEEETTSC----------------SCEEEEECTTT---TSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred ECCCCeEEEEecCCC----------------ceEEEeecCCc---cCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 4 4578999997310 01111111111 2345677774 3444445555677777775
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.39 E-value=0.00027 Score=52.53 Aligned_cols=155 Identities=10% Similarity=-0.036 Sum_probs=94.1
Q ss_pred ceEEEEEcCCCCe-EEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeCCC
Q psy11529 11 PVTTHAWNNTRQQ-LAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNNDD 88 (244)
Q Consensus 11 ~v~~~~~~~~~~~-l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~ 88 (244)
...+++|.+.+.. +.+-...+.|..+++.+ .. .....+...-.....+++.+.+..| ++-...+.|.+++ ...
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g--~~-~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~--~dG 110 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK--TE-SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN--LDG 110 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTS--SS-CCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEE--TTS
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccC--CC-ceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEE--CCC
Confidence 4567889885444 44445678888888876 21 1111222222345678888755444 4445567899999 544
Q ss_pred CCceeeEEEeccCcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529 89 KKWKPTLVLLRINRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS 166 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 166 (244)
.. ...+ ..........+++.|.+..|+.+.. .+.|...+++.... .......-...+.++++|++..|+.+.
T Consensus 111 ~~-~~~l-~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----~~~~~~~l~~Pnglavd~~~~~lY~aD 184 (318)
T 3sov_A 111 SL-RKVL-FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----FIIINSEIYWPNGLTLDYEEQKLYWAD 184 (318)
T ss_dssp CS-CEEE-ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC----EEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred Cc-EEEE-EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe----EEEEECCCCCccEEEEeccCCEEEEEE
Confidence 32 2222 2234456789999997666666653 46777777654432 122222234678999999776665554
Q ss_pred -CCCeEEEEEe
Q psy11529 167 -TDFKVRVFSA 176 (244)
Q Consensus 167 -~dg~i~i~d~ 176 (244)
..+.|..+|+
T Consensus 185 ~~~~~I~~~d~ 195 (318)
T 3sov_A 185 AKLNFIHKSNL 195 (318)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCEEEEEcC
Confidence 4678988887
No 282
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=0.00033 Score=58.68 Aligned_cols=202 Identities=8% Similarity=-0.044 Sum_probs=116.9
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeee-eccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCC
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDV-LDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNND 87 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 87 (244)
...|.++...++|++. .|+.++-|..|+..+ +.+..... -......|.++...+++.+.+ |+.++-+..+| ..
T Consensus 362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~--~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~--~~ 435 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGK--RVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYN--TR 435 (781)
T ss_dssp SSCEEEEEECTTSCEE-EEEBSSCEEEEETTE--EEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEEC--SS
T ss_pred CcceEEEEEcCCCCEE-EEeCCCcEEEEECCC--CeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEc--CC
Confidence 4568999888888755 455455688888765 21111110 012346789998888777555 66666788888 65
Q ss_pred CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeec---CCCCceeEEEecCCCCEEEE
Q psy11529 88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKK---PIKSTITCLDWHPNNHLLGC 164 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~ 164 (244)
+++.............|.++...+++. |..++. +-+..+|..+.+... ..... .....|.++...++|++.+.
T Consensus 436 ~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~--~~~~~~~~~~~~~i~~i~~d~~g~lWig 511 (781)
T 3v9f_A 436 LKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIH--HYDTSNSQLLENFVRSIAQDSEGRFWIG 511 (781)
T ss_dssp SCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCE--EECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred CCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEe--cccCcccccccceeEEEEEcCCCCEEEE
Confidence 554221110001245788998888776 444555 457788876654311 11111 11357889999998876554
Q ss_pred eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC-CCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS-SGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
+..+-+..||... . ....+.... -....|.++...++|.+.++. .+|.+..||.++
T Consensus 512 -t~~~Gl~~~~~~~------------------~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~ 568 (781)
T 3v9f_A 512 -TFGGGVGIYTPDM------------------Q-LVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARN 568 (781)
T ss_dssp -ESSSCEEEECTTC------------------C-EEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTT
T ss_pred -EcCCCEEEEeCCC------------------C-eEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCC
Confidence 4433477787521 1 222222110 004568899988888865544 366547777653
No 283
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.0005 Score=53.97 Aligned_cols=159 Identities=8% Similarity=0.067 Sum_probs=93.9
Q ss_pred ceEEEEEcCC-CC-eEEEecCCCeEEEeeeccCCCcceeeeeec-c---CCCceEEEEe-------CCCCCeEEEEeCCc
Q psy11529 11 PVTTHAWNNT-RQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVLD-G---HDLKVTGIDW-------APNTNRIVTCSADR 77 (244)
Q Consensus 11 ~v~~~~~~~~-~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-~---~~~~v~~~~~-------~~~~~~l~~~~~d~ 77 (244)
....|+|+|. .. ++++-...+.|++.|+++ + .+..+. . .......++| ++++..|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~--~---~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN--R---MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT--T---EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC--C---EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 4568999983 44 444444446788888877 3 333332 1 1235789999 99999777665543
Q ss_pred -------cEEEEeeeCCC-CCcee---eEEEeccCcceEEEEECCCCCe-EEEeeCCCeEEEEEee-------cCCCc--
Q psy11529 78 -------NAYVWTQNNDD-KKWKP---TLVLLRINRAATCVKWSPLENK-FAAGSGARLISVCYFE-------SENDW-- 136 (244)
Q Consensus 78 -------~i~iwd~~~~~-~~~~~---~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~-------~~~~~-- 136 (244)
.|.+.+ ... +.+.. ...+.. -.....++++|++.. +++-..++.|..+|++ ++...
T Consensus 215 ~~~~~~~~V~~i~--r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 215 GKGDESPSVYIIK--RNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp TTGGGEEEEEEEE--CCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CCcccCceEEEEe--cCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 255665 333 33321 011112 235568899995444 5555567889999987 34320
Q ss_pred ---e----EEEeeecCCCCceeEEEecCCCCEEEEe-eCCCeEEEEEee
Q psy11529 137 ---W----VAKHIKKPIKSTITCLDWHPNNHLLGCG-STDFKVRVFSAY 177 (244)
Q Consensus 137 ---~----~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~dg~i~i~d~~ 177 (244)
. .......+.......++|+|+|++|+.+ +....|+.++..
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 0 0011122333556899999999955544 456788887763
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.35 E-value=0.00043 Score=53.19 Aligned_cols=160 Identities=10% Similarity=-0.049 Sum_probs=97.2
Q ss_pred CCceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeE-EEEeCCccEEEEeeeC
Q psy11529 9 INPVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRI-VTCSADRNAYVWTQNN 86 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~ 86 (244)
...+.+++|++.+..|..+ ...+.|+.+++.+..........+.........+++.+.+..| ++-...+.|.+.+ +
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~--~ 188 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD--T 188 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEC--T
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEe--C
Confidence 4567889999866555544 4567888888765110001222233234567789998844444 4445577898888 5
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC 164 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 164 (244)
.... ...+ ....-.....+++.|.+..|+.... .+.|...+++.... .......-.....++++|++..|+.
T Consensus 189 ~g~~-~~~l-~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~----~~~~~~~l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 189 KGVK-RKTL-FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVTENIQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp TTCS-EEEE-EECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC----EEEECSSCSCEEEEEEETTTTEEEE
T ss_pred CCCc-eEEE-EeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc----EEEEECCCCceEEEEEEeCCCEEEE
Confidence 5443 2222 2234456789999997666666553 36777777765543 2222222357789999998776666
Q ss_pred ee-CCCeEEEEEe
Q psy11529 165 GS-TDFKVRVFSA 176 (244)
Q Consensus 165 ~~-~dg~i~i~d~ 176 (244)
+. ..+.|..+|+
T Consensus 263 aD~~~~~I~~~d~ 275 (400)
T 3p5b_L 263 VDSKLHSISSIDV 275 (400)
T ss_dssp EETTTTEEEEEET
T ss_pred EECCCCEEEEEeC
Confidence 54 4568888887
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.35 E-value=0.00035 Score=51.88 Aligned_cols=185 Identities=11% Similarity=0.061 Sum_probs=109.7
Q ss_pred eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCCCCCceeeEEEeccC
Q psy11529 23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNNDDKKWKPTLVLLRIN 101 (244)
Q Consensus 23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 101 (244)
+|+.+. ...|+..++++ ........+. ......+++|++.+..|+.+ ...+.|..++ ...+...... ....-
T Consensus 6 ~ll~~~-~~~I~~i~l~~--~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~--~~g~~~~~~~-~~~~l 78 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATN--GKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE--FNKTESVQNV-VVSGL 78 (318)
T ss_dssp EEEEEC-EEEEEEEETTC--TTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEE--TTSSSCCCEE-EEECC
T ss_pred EEEEEc-cCeEEEEECCC--CceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEE--ccCCCceEEE-EcCCC
Confidence 444443 46899999876 3111112222 22346689999855555544 4567888888 5544321122 22233
Q ss_pred cceEEEEECCCCCeE-EEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC--CCeEEEEEeee
Q psy11529 102 RAATCVKWSPLENKF-AAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST--DFKVRVFSAYI 178 (244)
Q Consensus 102 ~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--dg~i~i~d~~~ 178 (244)
.....+++.+.+..| ++-...+.|.+++++.... .............++++|.+..|+.... .+.|...++
T Consensus 79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~----~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~-- 152 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM-- 152 (318)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEET--
T ss_pred CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE----EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEc--
Confidence 456788998755444 4444577899988776543 2222233356789999997666655542 567877775
Q ss_pred cccccCCCCCCCCccccccceeEEe-cCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529 179 KDIESAPQSTNWGSKSTLGNCLVEL-NNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ 240 (244)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~ 240 (244)
.+.....+ ... -.....++++|++..|+.+. ..+.|..+|+.
T Consensus 153 -----------------dG~~~~~~~~~~---l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 153 -----------------DGSSRFIIINSE---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp -----------------TSCSCEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -----------------CCCCeEEEEECC---CCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 23222222 222 44578999999777666554 46778888875
No 286
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.33 E-value=8.4e-05 Score=60.05 Aligned_cols=76 Identities=8% Similarity=-0.074 Sum_probs=48.8
Q ss_pred EEeCCCCCeEEEEeCC----------------ccEEEEeeeCCCCCceeeEEEeccCc-------ceEEEEEC-CCC---
Q psy11529 61 IDWAPNTNRIVTCSAD----------------RNAYVWTQNNDDKKWKPTLVLLRINR-------AATCVKWS-PLE--- 113 (244)
Q Consensus 61 ~~~~~~~~~l~~~~~d----------------~~i~iwd~~~~~~~~~~~~~~~~~~~-------~v~~~~~~-~~~--- 113 (244)
+++.++...++.+..+ +.|..+| ..+++.+-......|.. ...-+... .+|
T Consensus 246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald--~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~ 323 (599)
T 1w6s_A 246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRD--ADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKAR 323 (599)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEE--TTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEE
T ss_pred eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEe--CCCCceeeEeecCCCccccccCCCccEEEeccccCCcEE
Confidence 4555666666666544 3788888 88998766665443321 11112222 456
Q ss_pred CeEEEeeCCCeEEEEEeecCCCceE
Q psy11529 114 NKFAAGSGARLISVCYFESENDWWV 138 (244)
Q Consensus 114 ~~l~~~~~d~~i~i~d~~~~~~~~~ 138 (244)
..++.++.+|.+.++|.++++..+.
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEEECCCcEEEEEECCCCCEeec
Confidence 4677788999999999988876443
No 287
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.30 E-value=0.00021 Score=57.72 Aligned_cols=59 Identities=5% Similarity=-0.198 Sum_probs=38.9
Q ss_pred ccEEEEeeeCCCCCceeeEEEeccCc-------ceEEEEEC-CCCC---eEEEeeCCCeEEEEEeecCCCce
Q psy11529 77 RNAYVWTQNNDDKKWKPTLVLLRINR-------AATCVKWS-PLEN---KFAAGSGARLISVCYFESENDWW 137 (244)
Q Consensus 77 ~~i~iwd~~~~~~~~~~~~~~~~~~~-------~v~~~~~~-~~~~---~l~~~~~d~~i~i~d~~~~~~~~ 137 (244)
+.|..+| ..+++.+-......+.. ...-+... .+|+ .++.++.+|.++++|.++++.++
T Consensus 291 ~~v~AlD--~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 360 (582)
T 1flg_A 291 SGQVGVD--PSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQN 360 (582)
T ss_dssp SEEEEEC--TTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred ceEEEEe--CCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEec
Confidence 5788899 88998766665433321 11112221 4564 67888999999999988887644
No 288
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.22 E-value=0.00019 Score=57.76 Aligned_cols=181 Identities=12% Similarity=0.062 Sum_probs=105.3
Q ss_pred EEEcCCCCeEEEecCC----------------CeEEEeeeccCCCcceeeeeec--cC--------CCceEEEEeCCCCC
Q psy11529 15 HAWNNTRQQLAFTPNN----------------QEVHLYQYEKAANDWSQLDVLD--GH--------DLKVTGIDWAPNTN 68 (244)
Q Consensus 15 ~~~~~~~~~l~~~~~d----------------~~v~v~~~~~~~~~~~~~~~~~--~~--------~~~v~~~~~~~~~~ 68 (244)
+++.++...+..+..+ +.|..+|..+ + +.+..++ .| ..++. +....+|+
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t--G--~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~ 314 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT--G--MAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGK 314 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT--C--CEEEEEESSTTCSSCCCCCCCCEE-EEEEETTE
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC--C--cEEEEecCCCCcccccccCCCCEE-EecccCCc
Confidence 4566666666655432 3588888876 4 3433333 12 12221 22224674
Q ss_pred ---eEEEEeCCccEEEEeeeCCCCCceeeEEEeccC-----------cce--------------------------EEEE
Q psy11529 69 ---RIVTCSADRNAYVWTQNNDDKKWKPTLVLLRIN-----------RAA--------------------------TCVK 108 (244)
Q Consensus 69 ---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----------~~v--------------------------~~~~ 108 (244)
.++.++.+|.+.++| ..+++.+....+.... .++ ..++
T Consensus 315 ~~~~v~~~~~~G~l~~lD--~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a 392 (571)
T 2ad6_A 315 MTPLLSHIDRNGILYTLN--RENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDS 392 (571)
T ss_dssp EEEEEEEECTTSEEEEEE--TTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCE
T ss_pred EEEEEEEeCCCcEEEEEE--CCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCce
Confidence 567788899999999 7888765444321100 011 2357
Q ss_pred ECCCCCeEEEee-------------------------------------CCCeEEEEEeecCCCceEEEeeecCCCCcee
Q psy11529 109 WSPLENKFAAGS-------------------------------------GARLISVCYFESENDWWVAKHIKKPIKSTIT 151 (244)
Q Consensus 109 ~~~~~~~l~~~~-------------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 151 (244)
++|+...+++.. .++.+..||..+++..|..... ..+.
T Consensus 393 ~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-----~~~~ 467 (571)
T 2ad6_A 393 YDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-----FAAW 467 (571)
T ss_dssp EETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-----SCCC
T ss_pred ECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-----CCcc
Confidence 778766766643 3478888888888764443321 1222
Q ss_pred EEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEE
Q psy11529 152 CLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCW 227 (244)
Q Consensus 152 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 227 (244)
...+...+..+++++.||.|+.+|. .+++.+..+.... ...-.-+.+..+|+.++.
T Consensus 468 ~~~~~t~gg~v~~g~~dg~l~a~D~------------------~tG~~lw~~~~~~--~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 468 GGTLYTKGGLVWYATLDGYLKALDN------------------KDGKELWNFKMPS--GGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp SBCEEETTTEEEEECTTSEEEEEET------------------TTCCEEEEEECSS--CCCSCCEEEEETTEEEEE
T ss_pred ceeEEECCCEEEEEcCCCeEEEEEC------------------CCCCEEEEEeCCC--CcEeeeEEEEECCEEEEE
Confidence 2222334567778899999999998 6788887776531 111223446678875543
No 289
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.21 E-value=0.0007 Score=49.70 Aligned_cols=189 Identities=11% Similarity=0.106 Sum_probs=98.2
Q ss_pred CCCeEEEecCC-----CeEEEeeeccCCCc---ceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----ccEEEEeeeC
Q psy11529 20 TRQQLAFTPNN-----QEVHLYQYEKAAND---WSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----RNAYVWTQNN 86 (244)
Q Consensus 20 ~~~~l~~~~~d-----~~v~v~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~ 86 (244)
+++.++.|+.+ ..+.+||..+ +. +..+..+.........+.+ +++.++.|+.+ ..+.+|| .
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~--~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d--~ 135 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTA--DEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYD--P 135 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTC--CTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEE--T
T ss_pred CCEEEEEcCCCCCccCceEEEEECCC--CCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEc--C
Confidence 56677777654 4688899877 55 5655444322222222333 46666666643 3578888 7
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC-----CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCE
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-----RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL 161 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 161 (244)
.+.++.....+.........+.+ +++.++.|+.+ ..+.+||..+.+ |...............+.+ ++++
T Consensus 136 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~i 209 (301)
T 2vpj_A 136 NIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH--WTNVTPMATKRSGAGVALL--NDHI 209 (301)
T ss_dssp TTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEE
T ss_pred CCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc--EEeCCCCCcccccceEEEE--CCEE
Confidence 77776554332222222223333 56677776654 347777766553 3332221111112222222 5667
Q ss_pred EEEeeCC-----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC-----
Q psy11529 162 LGCGSTD-----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD----- 231 (244)
Q Consensus 162 l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----- 231 (244)
++.|+.+ ..+.+||+.... ...+..+... ......+.+ ++++++.|+.+
T Consensus 210 ~v~GG~~~~~~~~~v~~yd~~~~~----------------W~~~~~~p~~---r~~~~~~~~--~~~i~v~GG~~~~~~~ 268 (301)
T 2vpj_A 210 YVVGGFDGTAHLSSVEAYNIRTDS----------------WTTVTSMTTP---RCYVGATVL--RGRLYAIAGYDGNSLL 268 (301)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTE----------------EEEECCCSSC---CBSCEEEEE--TTEEEEECCBCSSSBE
T ss_pred EEEeCCCCCcccceEEEEeCCCCc----------------EEECCCCCCc---ccceeEEEE--CCEEEEEcCcCCCccc
Confidence 7777654 468888873221 1222222211 222222222 77777777765
Q ss_pred CcEEEEeCCC
Q psy11529 232 GSINVRMSQQ 241 (244)
Q Consensus 232 g~i~vwd~~~ 241 (244)
..+.+||+++
T Consensus 269 ~~v~~yd~~~ 278 (301)
T 2vpj_A 269 SSIECYDPII 278 (301)
T ss_dssp EEEEEEETTT
T ss_pred ccEEEEcCCC
Confidence 3578888765
No 290
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.19 E-value=0.0011 Score=53.57 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=48.9
Q ss_pred CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE
Q psy11529 122 ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV 201 (244)
Q Consensus 122 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (244)
.+.+..||+.+++..|...... ....-.....+.+++.++.||.++.||. .+++.+.
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~-----~~~~g~~~tagg~vf~gt~dg~l~A~D~------------------~tG~~lW 508 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERF-----AVWGGTMATAGDLVFYGTLDGYLKARDS------------------DTGDLLW 508 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESS-----CCCSBCEEETTTEEEEECTTSEEEEEET------------------TTCCEEE
T ss_pred cCeEEEEECCCCCEEeEecCCC-----CccCcceEecCCEEEEECCCCeEEEEEC------------------CCCCEEE
Confidence 4678888888887655443221 1111112235667888999999999999 7788888
Q ss_pred EecCCCCCCCCeEEEEEecCCCE
Q psy11529 202 ELNNSSSGGGWIHSVAFSKDGNK 224 (244)
Q Consensus 202 ~~~~~~~~~~~v~~~~~s~~~~~ 224 (244)
+++... .....-+.+..+|+.
T Consensus 509 ~~~l~~--g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 509 KFKIPS--GAIGYPMTYTHKGTQ 529 (599)
T ss_dssp EEECSS--CCCSCCEEEEETTEE
T ss_pred EeeCCC--CcEeccEEEEeCCEE
Confidence 776541 222233566678873
No 291
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.18 E-value=0.00096 Score=50.16 Aligned_cols=196 Identities=9% Similarity=0.068 Sum_probs=111.4
Q ss_pred ceEEEEEcCCCCeEEEec------------CCCeEEEeeeccCCCcceeeeeecc-----CCCceEEEEeCC--CCC-eE
Q psy11529 11 PVTTHAWNNTRQQLAFTP------------NNQEVHLYQYEKAANDWSQLDVLDG-----HDLKVTGIDWAP--NTN-RI 70 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~------------~d~~v~v~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~--~~~-~l 70 (244)
...+++..|+|..+++++ .+|.|.++|..++..+.+.+ .+.+ .......+.+.+ ++. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 456778888886665552 68999999987422222222 2332 234566777755 454 44
Q ss_pred EEEe-C--CccEEEEeeeCCCCCceeeEEEecc-CcceEEEEECCCCCeEEEeeC---C------------CeEEEEEee
Q psy11529 71 VTCS-A--DRNAYVWTQNNDDKKWKPTLVLLRI-NRAATCVKWSPLENKFAAGSG---A------------RLISVCYFE 131 (244)
Q Consensus 71 ~~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~---d------------~~i~i~d~~ 131 (244)
+.+. . +.++.+|+++...+.........+. -...+.+.+.++|..+++... | ..-.+|.++
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 4442 2 5678888864443333222222221 245789999999987666431 1 223455554
Q ss_pred cCCCceEEEeeecCCCCceeEEEecCCCCEEEEee-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCC
Q psy11529 132 SENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGG 210 (244)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (244)
.++. ..... .-...+.++|+||++.|+.+. ..++|..|++.... .......+.. .
T Consensus 210 ~~~~----~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g---------------~l~~~~~~~~----~ 265 (355)
T 3sre_A 210 PNDV----RVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW---------------TLTPLRVLSF----D 265 (355)
T ss_dssp TTCC----EEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS---------------CEEEEEEEEC----S
T ss_pred CCeE----EEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC---------------cEecCEEEeC----C
Confidence 4432 11111 124578999999998776655 56789999984110 0011122321 4
Q ss_pred CCeEEEEEec-CCCEEEEeeCC
Q psy11529 211 GWIHSVAFSK-DGNKLCWTSHD 231 (244)
Q Consensus 211 ~~v~~~~~s~-~~~~l~~~~~d 231 (244)
...-.+++.+ +|++.+++..+
T Consensus 266 g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 266 TLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp SEEEEEEECTTTCCEEEEEESC
T ss_pred CCCceEEEeCCCCcEEEEecCC
Confidence 5577889998 58877766433
No 292
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.16 E-value=0.0011 Score=49.95 Aligned_cols=158 Identities=9% Similarity=0.065 Sum_probs=93.1
Q ss_pred CceEEEEeCCCCCeEEEEe------------CCccEEEEeeeCCC--CCceeeEEEec-----cCcceEEEEECC--CCC
Q psy11529 56 LKVTGIDWAPNTNRIVTCS------------ADRNAYVWTQNNDD--KKWKPTLVLLR-----INRAATCVKWSP--LEN 114 (244)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~--~~~~~~~~~~~-----~~~~v~~~~~~~--~~~ 114 (244)
.....++..|+|..+++++ .+|.|.++| ..+ .+.. .+.+.+ ..-....+.+.+ ++.
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d--~~~~~~~~~-~l~~~g~~~~~~~f~PhGi~~~~d~dg~ 126 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMD--LNEKEPAVS-ELEIIGNTLDISSFNPHGISTFIDDDNT 126 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEE--TTSSSCCEE-ECEEECSSCCGGGCCEEEEEEEECTTCC
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEe--cCCCCCceE-EEEccCCCCCcCceeeeeeEEEECCCCc
Confidence 3456777888876655542 689999999 553 3322 223332 123566777755 343
Q ss_pred -eEEEeeC---CCeEEEEEeecCCCceEEEeeec-CCCCceeEEEecCCCCEEEEeeC-----------------CCeEE
Q psy11529 115 -KFAAGSG---ARLISVCYFESENDWWVAKHIKK-PIKSTITCLDWHPNNHLLGCGST-----------------DFKVR 172 (244)
Q Consensus 115 -~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~-----------------dg~i~ 172 (244)
+|+++.. +.++.+|+++............. ..-...+++.+.++|++.++... .|.|.
T Consensus 127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 3544432 56889999987654222222222 22356889999999987776531 13333
Q ss_pred EEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCC
Q psy11529 173 VFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQ 240 (244)
Q Consensus 173 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~ 240 (244)
-+|. ++......+ -...+.++|+||++.|+.+. ..+.|..|+++
T Consensus 207 r~d~--------------------~~~~~~~~~----l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 207 YYSP--------------------NDVRVVAEG----FDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EECT--------------------TCCEEEEEE----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred EEEC--------------------CeEEEeecC----CcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 3332 221111111 34568999999998776664 56789999875
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.14 E-value=0.0016 Score=51.19 Aligned_cols=219 Identities=7% Similarity=0.006 Sum_probs=112.9
Q ss_pred ceEEEEE-------cCCCCeEEEecCCC-------eEEEeeeccCCCccee---eeeeccCCCceEEEEeCCC-CCeEEE
Q psy11529 11 PVTTHAW-------NNTRQQLAFTPNNQ-------EVHLYQYEKAANDWSQ---LDVLDGHDLKVTGIDWAPN-TNRIVT 72 (244)
Q Consensus 11 ~v~~~~~-------~~~~~~l~~~~~d~-------~v~v~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~-~~~l~~ 72 (244)
....++| +++|+.|+++...+ .|.+++.... +.+.. ...+... .....++++|+ +.++++
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~-G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvt 264 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD-GTFDDRSDIQLIAAY-KQCNGATIHPINGELYFN 264 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT-SCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEE
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC-CceeecccceeeccC-CCceEEEEcCCCCeEEEE
Confidence 4788999 99999666665433 2555543221 12210 0122211 23357788995 444555
Q ss_pred EeCCccEEEEeeeCC-------CCCc-----------eeeEEEeccCcceEEEEECCCCCeEEEe-eCCCeEEEEEeecC
Q psy11529 73 CSADRNAYVWTQNND-------DKKW-----------KPTLVLLRINRAATCVKWSPLENKFAAG-SGARLISVCYFESE 133 (244)
Q Consensus 73 ~~~d~~i~iwd~~~~-------~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~ 133 (244)
-..++.|..+| +. ++.. ...+.........+.++|+|+++.|+.+ .....|+.++.+..
T Consensus 265 d~~~g~V~r~d--~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~ 342 (496)
T 3kya_A 265 SYEKGQVFRLD--LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI 342 (496)
T ss_dssp ETTTTEEEEEC--HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred ECCCCEEEEEe--cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence 55678899999 54 4432 0111112233456899999999965555 45678888777654
Q ss_pred CCce----EEEee--ecCC---------CCcee-EEEec-------CCCCEEEEeeCCCeEEEEEeeecccccCCCCC--
Q psy11529 134 NDWW----VAKHI--KKPI---------KSTIT-CLDWH-------PNNHLLGCGSTDFKVRVFSAYIKDIESAPQST-- 188 (244)
Q Consensus 134 ~~~~----~~~~~--~~~~---------~~~v~-~~~~~-------p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-- 188 (244)
.... ...-. ..+. -.... .+... +++.++++=....+|+.++.. ..+.......
T Consensus 343 ~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-G~v~TiaG~g~~ 421 (496)
T 3kya_A 343 KKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-GIVSTYAGRGAS 421 (496)
T ss_dssp TTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-CBEEEEEESCTT
T ss_pred cceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC-CCEEEEeccccc
Confidence 3210 00000 0000 01233 34443 455555555566778887731 1111000000
Q ss_pred -------CCCccccccceeEEecCCCCCCCCeEEEEEecC-CCEEEEeeCCCcEEEEeCCC
Q psy11529 189 -------NWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD-GNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 189 -------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~ 241 (244)
.++. ..+... .... -.....++++++ |.++++=.....|+.++++.
T Consensus 422 ~~~~~~~~~G~--~dG~~~--~~a~---f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 422 TSLADGNQWGT--DDGDLR--EVAR---FRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp HHHHHSCSCCC--CCEETT--TTCC---CSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred ccccCcccccc--CCCCch--hhhh---cCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 0000 000000 0001 245688999997 76666666677899988764
No 294
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=0.0014 Score=54.93 Aligned_cols=195 Identities=11% Similarity=0.047 Sum_probs=113.2
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec---cCCCceEEEEeCCCCCeEEEEeCCccEEEEeee
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD---GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN 85 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 85 (244)
...|.++...++|++.+ |+.++-|..++..+ + ....+. .....|.++...+++...+ |+. +-+..+|
T Consensus 406 ~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~--~---~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~-- 475 (781)
T 3v9f_A 406 SNSVLCSLKDSEGNLWF-GTYLGNISYYNTRL--K---KFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVID-- 475 (781)
T ss_dssp CSBEEEEEECTTSCEEE-EETTEEEEEECSSS--C---EEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEE--
T ss_pred CcceEEEEECCCCCEEE-EeccCCEEEEcCCC--C---cEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEe--
Confidence 46788898888887655 55566788888766 3 222222 1346789999888776554 444 4588888
Q ss_pred CCCCCceeeEEEe---ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC---CCCceeEEEecCCC
Q psy11529 86 NDDKKWKPTLVLL---RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP---IKSTITCLDWHPNN 159 (244)
Q Consensus 86 ~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~v~~~~~~p~~ 159 (244)
..+++........ .....+.++...++|+..+ |+.++-+..||.+..+. ...... ....|.++...++|
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~----~~~~~~~~l~~~~i~~i~~d~~g 550 (781)
T 3v9f_A 476 LASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLV----RKFNQYEGFCSNTINQIYRSSKG 550 (781)
T ss_dssp SSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEE----EEECTTTTCSCSCEEEEEECTTS
T ss_pred CCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeE----EEccCCCCCCCCeeEEEEECCCC
Confidence 6666543222111 0135688999988887544 45433366666544421 122111 23568899998888
Q ss_pred CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCC-CCCCCeEEEEEecCCCEEEEeeCCCcEEEEe
Q psy11529 160 HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSS-SGGGWIHSVAFSKDGNKLCWTSHDGSINVRM 238 (244)
Q Consensus 160 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 238 (244)
++.+. +.+|.+..||... .+ ...+.... -....|.++...++|++.+++ ..| |..++
T Consensus 551 ~lWi~-T~~Glv~~~d~~~------------------~~-~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~ 608 (781)
T 3v9f_A 551 QMWLA-TGEGLVCFPSARN------------------FD-YQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYI 608 (781)
T ss_dssp CEEEE-ETTEEEEESCTTT------------------CC-CEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEE
T ss_pred CEEEE-ECCCceEEECCCC------------------Cc-EEEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEE
Confidence 75554 4467558887622 21 22221110 003457788888888765543 444 55555
Q ss_pred CC
Q psy11529 239 SQ 240 (244)
Q Consensus 239 ~~ 240 (244)
.+
T Consensus 609 ~~ 610 (781)
T 3v9f_A 609 TS 610 (781)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.13 E-value=0.0026 Score=53.15 Aligned_cols=160 Identities=9% Similarity=-0.071 Sum_probs=95.7
Q ss_pred CCceEEEEEcCCCCeE-EEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeC
Q psy11529 9 INPVTTHAWNNTRQQL-AFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNN 86 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l-~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 86 (244)
...+.+++|.+....| ++-...+.|+.+++.+..........+.........|++.+.+..|+.+ ...+.|.+.+ +
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~--l 500 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD--T 500 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE--T
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEe--C
Confidence 3556788998855544 4445567888888865100001122233234456789998866555544 4578899988 5
Q ss_pred CCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-C-CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529 87 DDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-A-RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGC 164 (244)
Q Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 164 (244)
.... ...+ ....-.....|++.|.+..|+.+.. . +.|...+++.... .......-.....|++++.+..|+.
T Consensus 501 dG~~-~~~l-~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~----~~lv~~~l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 501 KGVK-RKTL-FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVTENIQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp TSSS-EEEE-EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE----EEEECSSCSCEEEEEEETTTTEEEE
T ss_pred CCCe-EEEE-EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce----EEEEeCCCCCceEEEEecCCCeEEE
Confidence 5433 2222 2234456889999998666666553 2 6777777665432 2222223357889999987766666
Q ss_pred ee-CCCeEEEEEe
Q psy11529 165 GS-TDFKVRVFSA 176 (244)
Q Consensus 165 ~~-~dg~i~i~d~ 176 (244)
+. ..+.|..+++
T Consensus 575 aD~~~~~I~~~d~ 587 (791)
T 3m0c_C 575 VDSKLHSISSIDV 587 (791)
T ss_dssp EETTTTEEEEEET
T ss_pred EeCCCCcEEEEec
Confidence 54 4567888886
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.12 E-value=5.3e-05 Score=62.48 Aligned_cols=159 Identities=11% Similarity=-0.067 Sum_probs=89.5
Q ss_pred CceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCC-CeEEEEeCCccEEEEeeeCC
Q psy11529 10 NPVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT-NRIVTCSADRNAYVWTQNND 87 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~ 87 (244)
..+.+++|++.+..|+.+ ...+.|+.+++.+..........+.........+++.+.+ +++++-...+.|.+++ +.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d--~d 483 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD--TK 483 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEB--SS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEe--cC
Confidence 345678898876666555 3457888888764100001111221112234568888644 4444445578899998 55
Q ss_pred CCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-C-CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-A-RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
.... ..+ ..........++++|.+.+|+.+.. . +.|..++++.... .......-...+.|+|+|++..|+.+
T Consensus 484 g~~~-~~l-~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~----~~l~~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 484 GVKR-KTL-FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVTENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp SCCE-EEE-CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC----CEESCSSCSSCCCEEECTTTCCEEEE
T ss_pred CCce-EEE-EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe----eEEEeCCCCCccEEEEeccCCEEEEE
Confidence 4331 111 1222345678999997666555543 2 6777766654432 11111222456789999976655544
Q ss_pred -eCCCeEEEEEe
Q psy11529 166 -STDFKVRVFSA 176 (244)
Q Consensus 166 -~~dg~i~i~d~ 176 (244)
...+.|..+++
T Consensus 558 D~~~~~I~~~d~ 569 (699)
T 1n7d_A 558 DSKLHSISSIDV 569 (699)
T ss_dssp ETTTTEEEEECS
T ss_pred ecCCCeEEEEcc
Confidence 45678988887
No 297
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.12 E-value=0.00041 Score=51.11 Aligned_cols=189 Identities=9% Similarity=0.090 Sum_probs=97.0
Q ss_pred CCCeEEEecCC----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC------ccEEEEeeeCCCC
Q psy11529 20 TRQQLAFTPNN----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD------RNAYVWTQNNDDK 89 (244)
Q Consensus 20 ~~~~l~~~~~d----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~ 89 (244)
+++.++.|+.+ ..+.+||... +.+..+..+.........+.+ +++.++.|+.+ ..+.+|| ..+.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d--~~~~ 128 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVK--DSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYD--TRTE 128 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTT--TEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEE--TTTT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCC--CeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEe--CCCC
Confidence 56677777754 6788889877 656655444322222222333 56667777654 4588888 7776
Q ss_pred CceeeEEEeccCcceEEEEECCCCCeEEEeeC---------CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529 90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSG---------ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH 160 (244)
Q Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 160 (244)
++.....+.........+.+ +++.++.|+. -..+.+||..+.+ |............. ++... +++
T Consensus 129 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~-~~~~~-~~~ 202 (306)
T 3ii7_A 129 SWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNH-GLVFV-KDK 202 (306)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSC-EEEEE-TTE
T ss_pred ceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcc-eEEEE-CCE
Confidence 65433222111122222233 5566666653 2346777766653 33332211111122 22222 566
Q ss_pred EEEEeeCC-----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC----
Q psy11529 161 LLGCGSTD-----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD---- 231 (244)
Q Consensus 161 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---- 231 (244)
+++.|+.+ ..+.+||+.... .+.+..+... ......+.+ ++++++.|+.+
T Consensus 203 i~v~GG~~~~~~~~~~~~yd~~~~~----------------W~~~~~~p~~---r~~~~~~~~--~~~i~v~GG~~~~~~ 261 (306)
T 3ii7_A 203 IFAVGGQNGLGGLDNVEYYDIKLNE----------------WKMVSPMPWK---GVTVKCAAV--GSIVYVLAGFQGVGR 261 (306)
T ss_dssp EEEECCEETTEEBCCEEEEETTTTE----------------EEECCCCSCC---BSCCEEEEE--TTEEEEEECBCSSSB
T ss_pred EEEEeCCCCCCCCceEEEeeCCCCc----------------EEECCCCCCC---ccceeEEEE--CCEEEEEeCcCCCee
Confidence 77777643 357788873221 1222222211 222233333 77778888754
Q ss_pred -CcEEEEeCCC
Q psy11529 232 -GSINVRMSQQ 241 (244)
Q Consensus 232 -g~i~vwd~~~ 241 (244)
..+.+||+++
T Consensus 262 ~~~~~~yd~~~ 272 (306)
T 3ii7_A 262 LGHILEYNTET 272 (306)
T ss_dssp CCEEEEEETTT
T ss_pred eeeEEEEcCCC
Confidence 4688888875
No 298
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.11 E-value=0.00069 Score=49.75 Aligned_cols=189 Identities=14% Similarity=0.101 Sum_probs=95.0
Q ss_pred CCCeEEEecCC-----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----ccEEEEeeeCCCC
Q psy11529 20 TRQQLAFTPNN-----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----RNAYVWTQNNDDK 89 (244)
Q Consensus 20 ~~~~l~~~~~d-----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~ 89 (244)
+++.++.|+.+ ..+.+||..+ ..+..+..+.........+.+ +++.++.|+.+ ..+.+|| ..+.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d--~~~~ 134 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVK--DQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYN--IKSN 134 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEE--TTTT
T ss_pred CCEEEEEeCcCCCccccceEEECCCC--CceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEe--CCCC
Confidence 56677777643 3588888877 556655544322222222333 46666667654 3577788 6776
Q ss_pred CceeeEEEeccCcceEEEEECCCCCeEEEeeCC-------CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEE
Q psy11529 90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-------RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLL 162 (244)
Q Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 162 (244)
++.....+.........+.+ +++.++.|+.+ ..+.+||..+.+ |...............+.+ +++++
T Consensus 135 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iy 208 (302)
T 2xn4_A 135 EWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVL--NNLLY 208 (302)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred eEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEE--CCEEE
Confidence 65443222211222222233 45666666542 346677765543 3332222111122222222 56777
Q ss_pred EEeeCCC-----eEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC-----
Q psy11529 163 GCGSTDF-----KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG----- 232 (244)
Q Consensus 163 ~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----- 232 (244)
+.|+.++ .+.+||+.... ...+..+... ......+. .++++++.|+.++
T Consensus 209 v~GG~~~~~~~~~~~~yd~~~~~----------------W~~~~~~~~~---r~~~~~~~--~~~~i~v~GG~~~~~~~~ 267 (302)
T 2xn4_A 209 AVGGHDGPLVRKSVEVYDPTTNA----------------WRQVADMNMC---RRNAGVCA--VNGLLYVVGGDDGSCNLA 267 (302)
T ss_dssp EECCBSSSSBCCCEEEEETTTTE----------------EEEECCCSSC---CBSCEEEE--ETTEEEEECCBCSSSBCC
T ss_pred EECCCCCCcccceEEEEeCCCCC----------------EeeCCCCCCc---cccCeEEE--ECCEEEEECCcCCCcccc
Confidence 7776543 68888873221 1222222111 11122222 3777777877653
Q ss_pred cEEEEeCCC
Q psy11529 233 SINVRMSQQ 241 (244)
Q Consensus 233 ~i~vwd~~~ 241 (244)
.+.+||+++
T Consensus 268 ~v~~yd~~~ 276 (302)
T 2xn4_A 268 SVEYYNPTT 276 (302)
T ss_dssp CEEEEETTT
T ss_pred cEEEEcCCC
Confidence 488888875
No 299
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.10 E-value=0.0014 Score=48.85 Aligned_cols=193 Identities=11% Similarity=0.092 Sum_probs=102.3
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK 89 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 89 (244)
..+.++.+.+ ++.+++ +..+.|. ...+.+..++.+.....+...+..+.+.+++..++.+ .++.|..-+ -...
T Consensus 80 ~~~~~i~~~~-~~~~~~-g~~g~i~--~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~--DgG~ 152 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWIV-GEPPIML--HTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTK--DSGK 152 (327)
T ss_dssp CEEEEEEEET-TEEEEE-EETTEEE--EESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEES--STTS
T ss_pred ccEEEEEecC-CeEEEE-ECCCeEE--EECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEc--CCCC
Confidence 3678899976 445554 4456443 3333224455543332344557788877666665554 455543221 1122
Q ss_pred CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC
Q psy11529 90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF 169 (244)
Q Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 169 (244)
.+... .......+..+.+.|++.+++++.. +.+..- .+.+...+... ..+....+..+.+.|++++++. +.+|
T Consensus 153 tW~~~--~~~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S-~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~~~-~~~G 225 (327)
T 2xbg_A 153 NWQAL--VQEAIGVMRNLNRSPSGEYVAVSSR-GSFYST-WEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLWMI-VNGG 225 (327)
T ss_dssp SEEEE--ECSCCCCEEEEEECTTSCEEEEETT-SSEEEE-ECTTCSSCEEE--ECCSSSCEEEEEECTTSCEEEE-ETTT
T ss_pred CCEEe--ecCCCcceEEEEEcCCCcEEEEECC-CcEEEE-eCCCCCceeEC--CCCCCCccceeEECCCCCEEEE-eCCc
Confidence 33222 2334567889999998887776654 433321 12212222222 2334567889999998876644 5678
Q ss_pred eEEEEEeeecccccCCCCCCCCccccccceeEEecCC-CCCCCCeEEEEEecCCCEEEEeeCCCcEE
Q psy11529 170 KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS-SSGGGWIHSVAFSKDGNKLCWTSHDGSIN 235 (244)
Q Consensus 170 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 235 (244)
.+++.+.. .++.-..+... -.....+..+++.+++.+++++. +|.|.
T Consensus 226 ~~~~s~~D------------------~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~ 273 (327)
T 2xbg_A 226 KIAFSDPD------------------NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL 273 (327)
T ss_dssp EEEEEETT------------------EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE
T ss_pred eEEEecCC------------------CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE
Confidence 77766310 01111111100 00034578888988877666554 66553
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.09 E-value=0.0026 Score=51.78 Aligned_cols=156 Identities=9% Similarity=-0.012 Sum_probs=94.1
Q ss_pred CceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCC
Q psy11529 10 NPVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNND 87 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~ 87 (244)
....+++|++.+..|..+ ...+.|..+++++ .. .....+...-.....+++.+.+..|+.+ ...+.|.+.+ ..
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g--~~-~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~--~d 114 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK--TE-SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN--LD 114 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE--TT
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccC--CC-ceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEE--CC
Confidence 456789999866665554 3467888888876 21 1122333223567899999865555544 4578899999 54
Q ss_pred CCCceeeEEEeccCcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
... ...+ ....-.....+++.|.+..|+.+.. .+.|...+++.... .......-.....++++++++.|+.+
T Consensus 115 G~~-~~~l-~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~----~~l~~~~~~~P~Glald~~~~~LY~a 188 (619)
T 3s94_A 115 GSL-RKVL-FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----FIIINSEIYWPNGLTLDYEEQKLYWA 188 (619)
T ss_dssp SCS-CEEE-ECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred CCC-EEEE-EeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce----EEEEeCCCCCCcEEEEEccCCEEEEE
Confidence 433 2222 2234456789999998666666553 35566655554433 12222223567899999976666655
Q ss_pred e-CCCeEEEEEe
Q psy11529 166 S-TDFKVRVFSA 176 (244)
Q Consensus 166 ~-~dg~i~i~d~ 176 (244)
. ..+.|..+|+
T Consensus 189 D~~~~~I~~~~~ 200 (619)
T 3s94_A 189 DAKLNFIHKSNL 200 (619)
T ss_dssp ETTTCCEEEESS
T ss_pred eCCCCeEEEecC
Confidence 4 4567887776
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.08 E-value=0.0016 Score=49.04 Aligned_cols=103 Identities=10% Similarity=0.060 Sum_probs=60.9
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec---cCCCceEEEEeCCC---CCeEEEEeC-C-----c
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD---GHDLKVTGIDWAPN---TNRIVTCSA-D-----R 77 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----~ 77 (244)
..-..++|.|+|+++++ ...+.|++++ .. ....+..+. ........++|+|+ +..|+.+.. . +
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g---~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR-EG---RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE-TT---EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE-CC---CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 45678999999986655 4569999998 33 222222221 22456789999998 555554433 2 6
Q ss_pred cEEEEeeeCCCCCce---eeEE-Ee---ccCcceEEEEECCCCCeEEEe
Q psy11529 78 NAYVWTQNNDDKKWK---PTLV-LL---RINRAATCVKWSPLENKFAAG 119 (244)
Q Consensus 78 ~i~iwd~~~~~~~~~---~~~~-~~---~~~~~v~~~~~~~~~~~l~~~ 119 (244)
.|..++ ...+... ..+. +. ........++|.|+|.++++.
T Consensus 106 ~v~r~~--~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 106 QVVRLR--HLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEE--ECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEEE--eCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 677777 4443211 1111 22 111234689999999765554
No 302
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=98.08 E-value=0.0018 Score=49.48 Aligned_cols=151 Identities=9% Similarity=0.068 Sum_probs=93.5
Q ss_pred cCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc--CCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC-----
Q psy11529 18 NNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG--HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK----- 90 (244)
Q Consensus 18 ~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----- 90 (244)
..+|..++++- ++.||.-++... ..++.+ .+.. .-..|..+..+|+|++||..+ +..|.|-. +..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~-~~Yk~L-~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~--LP~~~~~~~~ 102 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTD-SLYHSL-NFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVME--VPWGYSNVED 102 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTC-SSCEEE-ECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEE--CCTTCSCCCC
T ss_pred EcCCCEEEEEE-CCEEEEEECCCC-CcceEE-ecCcccccCceeEEEECCCCCEEEEec-CCeEEEEE--ecCccccCcc
Confidence 34566666653 578888887641 222222 2221 122578899999999999886 55888888 44221
Q ss_pred ------cee-eEEEec----cCcceEEEEECCC---CCeEEEeeCCCeEEEEEeecCCCceE-EEe-----eecCCCCce
Q psy11529 91 ------WKP-TLVLLR----INRAATCVKWSPL---ENKFAAGSGARLISVCYFESENDWWV-AKH-----IKKPIKSTI 150 (244)
Q Consensus 91 ------~~~-~~~~~~----~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~-----~~~~~~~~v 150 (244)
... ...+.. ....|..+.|||- +..|++-..|+.|++||+........ ... ........+
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCE
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceE
Confidence 010 111111 2467999999996 56799999999999999987432111 110 001122578
Q ss_pred eEEEecCCCCEEEE--eeCCCeEEEE
Q psy11529 151 TCLDWHPNNHLLGC--GSTDFKVRVF 174 (244)
Q Consensus 151 ~~~~~~p~~~~l~~--~~~dg~i~i~ 174 (244)
.+++|.+++-.|.. .+..|.|+-.
T Consensus 183 ~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 89999998865655 4477877543
No 303
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=98.07 E-value=0.0018 Score=50.54 Aligned_cols=110 Identities=10% Similarity=0.052 Sum_probs=62.9
Q ss_pred CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec------cCcceEEEEECCC---CCeEEEeeC-----
Q psy11529 56 LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR------INRAATCVKWSPL---ENKFAAGSG----- 121 (244)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~----- 121 (244)
....+++|.|+|+.+++-...+.|.+++ ..++.......+.. .......|+|+|+ +..|+++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~--~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVN--PESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEEC--TTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEE--CCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3557999999998777654335788887 55555332222211 2455679999996 555555432
Q ss_pred --------CCeEEEEEeecCCC-c---eEEEe-eecCCCCceeEEEecCCCCEEEEeeC
Q psy11529 122 --------ARLISVCYFESEND-W---WVAKH-IKKPIKSTITCLDWHPNNHLLGCGST 167 (244)
Q Consensus 122 --------d~~i~i~d~~~~~~-~---~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~ 167 (244)
...|.-+++..... . ..... ...........++|.|||.++++.++
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 23555566544321 0 01111 11112245789999999987666443
No 304
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.03 E-value=0.00062 Score=50.21 Aligned_cols=189 Identities=11% Similarity=0.111 Sum_probs=95.7
Q ss_pred CCCeEEEecC----C-----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----ccEEEEeee
Q psy11529 20 TRQQLAFTPN----N-----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----RNAYVWTQN 85 (244)
Q Consensus 20 ~~~~l~~~~~----d-----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~ 85 (244)
++++++.|+. + ..+.+||..+ ..+..+..+.........+.+ +++.++.|+.+ ..+.+||
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd-- 143 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMT--NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYE-- 143 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTT--TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEE--
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCC--CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEEC--
Confidence 5667777765 2 3578888877 555555444322222223333 46666666543 3577888
Q ss_pred CCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC-----CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529 86 NDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-----RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH 160 (244)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 160 (244)
..+.++.....+.........+.+ +++.++.|+.+ ..+.+||..+.+ |...............+.+ +++
T Consensus 144 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~ 217 (308)
T 1zgk_A 144 PERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL--HNC 217 (308)
T ss_dssp TTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTE
T ss_pred CCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEE--CCE
Confidence 677665433222222222223333 55666776654 347777765542 3322221111122222222 567
Q ss_pred EEEEeeCC-----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC----
Q psy11529 161 LLGCGSTD-----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD---- 231 (244)
Q Consensus 161 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---- 231 (244)
+++.|+.+ ..+.+||+.... ...+..+... ......+. -++++++.|+.+
T Consensus 218 iyv~GG~~~~~~~~~v~~yd~~~~~----------------W~~~~~~p~~---r~~~~~~~--~~~~i~v~GG~~~~~~ 276 (308)
T 1zgk_A 218 IYAAGGYDGQDQLNSVERYDVETET----------------WTFVAPMKHR---RSALGITV--HQGRIYVLGGYDGHTF 276 (308)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTE----------------EEECCCCSSC---CBSCEEEE--ETTEEEEECCBCSSCB
T ss_pred EEEEeCCCCCCccceEEEEeCCCCc----------------EEECCCCCCC---ccceEEEE--ECCEEEEEcCcCCCcc
Confidence 77777654 458888874321 1122222211 22222222 267777777754
Q ss_pred -CcEEEEeCCC
Q psy11529 232 -GSINVRMSQQ 241 (244)
Q Consensus 232 -g~i~vwd~~~ 241 (244)
..+.+||+++
T Consensus 277 ~~~v~~yd~~~ 287 (308)
T 1zgk_A 277 LDSVECYDPDT 287 (308)
T ss_dssp CCEEEEEETTT
T ss_pred cceEEEEcCCC
Confidence 3578888865
No 305
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.99 E-value=0.001 Score=50.21 Aligned_cols=106 Identities=8% Similarity=-0.098 Sum_probs=61.4
Q ss_pred CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEE---eccCcceEEEEECCC---CCeEEEeeC----C---
Q psy11529 56 LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVL---LRINRAATCVKWSPL---ENKFAAGSG----A--- 122 (244)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~----d--- 122 (244)
.....++|.|+|++++ +..++.|.+++ . +++ .....+ .........++++|+ +..|+++.. +
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d--~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS--P-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC--S-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe--C-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 4567899999998555 45669998887 3 343 222211 112356889999998 555555443 2
Q ss_pred -CeEEEEEeecCCC-ce---EE-EeeecCCCCceeEEEecCCCCEEEEee
Q psy11529 123 -RLISVCYFESEND-WW---VA-KHIKKPIKSTITCLDWHPNNHLLGCGS 166 (244)
Q Consensus 123 -~~i~i~d~~~~~~-~~---~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~ 166 (244)
..|..|+...... .. .. .............++|.|||.++++.+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 5677777655411 00 11 111111122456799999998766643
No 306
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.94 E-value=0.0031 Score=47.54 Aligned_cols=105 Identities=9% Similarity=0.040 Sum_probs=61.0
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee---ccCCCceEEEEeCCC---CCeEEEEeC----C--
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL---DGHDLKVTGIDWAPN---TNRIVTCSA----D-- 76 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~----d-- 76 (244)
-..-..++|.|+|+++++ ..++.|++++... . ..+..+ .........++++|+ +..|+.+.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G---~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISPSG---K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECSSC---E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeCCC---c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 355678999999986655 4569999887433 2 233222 122456889999997 444544332 3
Q ss_pred --ccEEEEeeeCCCC--Cce---eeEE-Eec-cCcceEEEEECCCCCeEEEee
Q psy11529 77 --RNAYVWTQNNDDK--KWK---PTLV-LLR-INRAATCVKWSPLENKFAAGS 120 (244)
Q Consensus 77 --~~i~iwd~~~~~~--~~~---~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~ 120 (244)
..|..|+ .... ... ..+. +.. .......++|.|+|.++++.+
T Consensus 103 ~~~~v~r~~--~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 103 IRNRVIRGR--LDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEEE--ECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred cceEEEEEE--ECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 5677777 4433 111 1111 111 122356799999998666543
No 307
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.93 E-value=0.0001 Score=60.84 Aligned_cols=176 Identities=15% Similarity=0.133 Sum_probs=97.5
Q ss_pred CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe-CCccEEEEeeeCCC----CCceeeEEEeccCcce
Q psy11529 30 NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS-ADRNAYVWTQNNDD----KKWKPTLVLLRINRAA 104 (244)
Q Consensus 30 d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~v 104 (244)
.+.|+..++.+ . .....+. ....+..++|++.+..|+.+. ..+.|+.++ +.. .... .. +.......
T Consensus 385 ~~~I~~id~~~--~--~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~--~~g~~~~~~~~-~~-i~~~~~~P 455 (699)
T 1n7d_A 385 RHEVRKMTLDR--S--EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQ--LDRAHGVSSYD-TV-ISRDIQAP 455 (699)
T ss_dssp TTC-CEECTTS--C--CEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEE--SCCCCC-CCCC-CB-CCSCC--C
T ss_pred ccceEEEeCCC--C--cceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEe--cCCCCCCcceE-EE-EeCCCCCc
Confidence 45778788766 3 2222222 234566899998766666553 467888888 443 1111 11 11112345
Q ss_pred EEEEECCCCCe-EEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-C-CeEEEEEeeeccc
Q psy11529 105 TCVKWSPLENK-FAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST-D-FKVRVFSAYIKDI 181 (244)
Q Consensus 105 ~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d-g~i~i~d~~~~~~ 181 (244)
..+++.+.+.. +++-...+.|.+++++.... .............++++|.+.+|+.+.. . +.|..+++.
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~----~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d---- 527 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---- 527 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCE----EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS----
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCce----EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC----
Confidence 67888865444 44444567888888765432 2222222345678999997655554432 2 677777652
Q ss_pred ccCCCCCCCCccccccceeEEec-CCCCCCCCeEEEEEecCCCEEEEe-eCCCcEEEEeCC
Q psy11529 182 ESAPQSTNWGSKSTLGNCLVELN-NSSSGGGWIHSVAFSKDGNKLCWT-SHDGSINVRMSQ 240 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~ 240 (244)
+.....+. .. -.....|+|+|++..|+.+ +..+.|.++++.
T Consensus 528 ---------------G~~~~~l~~~~---l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 528 ---------------GVDIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp ---------------SCCCCEESCSS---CSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred ---------------CCCeeEEEeCC---CCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 22221221 11 3445789999876655544 456678888875
No 308
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.92 E-value=0.0058 Score=49.85 Aligned_cols=195 Identities=7% Similarity=-0.072 Sum_probs=114.7
Q ss_pred CceEEEEEcCCCCeEEE-ecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCC
Q psy11529 10 NPVTTHAWNNTRQQLAF-TPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNND 87 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~-~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~ 87 (244)
..+.+++|++.+..|.. -..++.|+.+++++ ...+ ..+.........+++.+.+..|+.+ ...+.|.+.+ +.
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g--~~~~--~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~--~d 110 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNG--SALE--HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSK--LD 110 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCE--EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE--TT
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCC--CCcE--EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEe--cC
Confidence 35678999986665554 45578898888876 3112 2222222456788888765555544 4467888888 54
Q ss_pred CCCceeeEEEeccCcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
... ...+ ....-.....+++.|....|+.... .+.|...+++.... ..... .-.....++++++++.|+.+
T Consensus 111 G~~-~~~l-~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~----~~l~~-~~~~P~GlalD~~~~~LY~a 183 (628)
T 4a0p_A 111 GQH-RQVL-VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER----TTLVP-NVGRANGLTIDYAKRRLYWT 183 (628)
T ss_dssp STT-CEEE-ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEEC-SCSSEEEEEEETTTTEEEEE
T ss_pred CCc-EEEE-EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce----EEEEC-CCCCcceEEEccccCEEEEE
Confidence 433 2222 2234456789999997666666553 45677666665543 11122 33577899999987766665
Q ss_pred e-CCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529 166 S-TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 166 ~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 240 (244)
. ..+.|..+|+.. .....+... ......+++.. +.++.+-...+.|...|..
T Consensus 184 D~~~~~I~~~d~dG-------------------~~~~v~~~~---l~~P~glav~~-~~ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 184 DLDTNLIESSNMLG-------------------LNREVIADD---LPHPFGLTQYQ-DYIYWTDWSRRSIERANKT 236 (628)
T ss_dssp ETTTTEEEEEETTS-------------------CSCEEEEEC---CSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred ECCCCEEEEEcCCC-------------------CceEEeecc---CCCceEEEEEC-CEEEEecCCCCEEEEEECC
Confidence 4 457888888731 111112222 33455777754 3344444446777777643
No 309
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.90 E-value=0.0021 Score=48.43 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=69.0
Q ss_pred CCCeEEEecC-C---------CeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEEEEeCC------------
Q psy11529 20 TRQQLAFTPN-N---------QEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSAD------------ 76 (244)
Q Consensus 20 ~~~~l~~~~~-d---------~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------------ 76 (244)
++++++.|+. + ..+.+||..+ ..|..+.... .......++. .+++.++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~ 140 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT--NSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLN 140 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTT--TEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCC--CcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchh
Confidence 5667777765 2 4688888877 6566554443 1112222232 456777777654
Q ss_pred ---------------------------ccEEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC------CC
Q psy11529 77 ---------------------------RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG------AR 123 (244)
Q Consensus 77 ---------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~ 123 (244)
..+.+|| ..+.++.....+......-.+++.. +++.++.|+. ..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd--~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~ 217 (357)
T 2uvk_A 141 EAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD--PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTD 217 (357)
T ss_dssp HHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE--TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECC
T ss_pred hcCCcccchhhhhhhhccccccccCCcccEEEEe--CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccC
Confidence 4688888 7777765543322111111223322 4556666653 23
Q ss_pred eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529 124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS 166 (244)
Q Consensus 124 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 166 (244)
.+.+||++.....|................+...++++++.|+
T Consensus 218 ~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG 260 (357)
T 2uvk_A 218 AVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGG 260 (357)
T ss_dssp CEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECC
T ss_pred ceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcC
Confidence 4667776444443433322211111111112223566777776
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.90 E-value=0.0032 Score=46.13 Aligned_cols=189 Identities=10% Similarity=0.069 Sum_probs=95.6
Q ss_pred CCCeEEEec-CC-----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----ccEEEEeeeCCC
Q psy11529 20 TRQQLAFTP-NN-----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----RNAYVWTQNNDD 88 (244)
Q Consensus 20 ~~~~l~~~~-~d-----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 88 (244)
++..++.|+ .+ ..+.+||..+ +.+..+..+.........+.. ++..++.|+.+ ..+.+|| ..+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d--~~~ 87 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKT--QEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLD--YTA 87 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTT--TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEE--TTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCC--CeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEE--CCC
Confidence 456777777 32 4688899877 555555443322222222222 46666777654 4688888 677
Q ss_pred CC---ceeeEEEeccCcceEEEEECCCCCeEEEeeCC-----CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCC
Q psy11529 89 KK---WKPTLVLLRINRAATCVKWSPLENKFAAGSGA-----RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH 160 (244)
Q Consensus 89 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 160 (244)
.+ +.....+.........+.+ +++.++.|+.+ ..+.+||..+.+ |...............+.+ +++
T Consensus 88 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~ 161 (301)
T 2vpj_A 88 DEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ--WSMLGDMQTAREGAGLVVA--SGV 161 (301)
T ss_dssp CTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEECSSCCBSCEEEEE--TTE
T ss_pred CCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe--EEECCCCCCCcccceEEEE--CCE
Confidence 66 5443222222222223333 56667776643 346677765543 3333222211122222222 567
Q ss_pred EEEEeeCC-----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC----
Q psy11529 161 LLGCGSTD-----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD---- 231 (244)
Q Consensus 161 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---- 231 (244)
+++.|+.+ ..+.+||+.+.. .+.+..+... ......+.+ ++++++.|+.+
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~~----------------W~~~~~~p~~---r~~~~~~~~--~~~i~v~GG~~~~~~ 220 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTGH----------------WTNVTPMATK---RSGAGVALL--NDHIYVVGGFDGTAH 220 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTE----------------EEEECCCSSC---CBSCEEEEE--TTEEEEECCBCSSSB
T ss_pred EEEECCCCCCcccceEEEEeCCCCc----------------EEeCCCCCcc---cccceEEEE--CCEEEEEeCCCCCcc
Confidence 77777654 357788873221 1222112211 222222222 67777777764
Q ss_pred -CcEEEEeCCC
Q psy11529 232 -GSINVRMSQQ 241 (244)
Q Consensus 232 -g~i~vwd~~~ 241 (244)
..+.+||+++
T Consensus 221 ~~~v~~yd~~~ 231 (301)
T 2vpj_A 221 LSSVEAYNIRT 231 (301)
T ss_dssp CCCEEEEETTT
T ss_pred cceEEEEeCCC
Confidence 4588888865
No 311
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.88 E-value=0.0029 Score=46.78 Aligned_cols=148 Identities=10% Similarity=0.078 Sum_probs=73.5
Q ss_pred cCCCCeEEEecC-----C------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC--------cc
Q psy11529 18 NNTRQQLAFTPN-----N------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD--------RN 78 (244)
Q Consensus 18 ~~~~~~l~~~~~-----d------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~ 78 (244)
..+++.++.|+. . ..+.+||..+ +.+..+..+.........+.+ +++.++.|+.+ ..
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD--SEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT--TEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCC--CeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence 346777888873 1 1377778776 555554433321111122222 45666666632 45
Q ss_pred EEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-C-----CeEEEEEeecCCCceEEEeeecCCCCceeE
Q psy11529 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-A-----RLISVCYFESENDWWVAKHIKKPIKSTITC 152 (244)
Q Consensus 79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 152 (244)
+.+|| ..+.++.....++........+. -+++.++.|+. + ..+.+||..+.+ |...............
T Consensus 119 ~~~~d--~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~ 192 (315)
T 4asc_A 119 VMCYD--RLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE--WKELAPMQTARSLFGA 192 (315)
T ss_dssp EEEEE--TTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEE
T ss_pred EEEEC--CCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCe--EEECCCCCCchhceEE
Confidence 88888 77766543332222222222222 24566677665 2 357777766542 3322221111112222
Q ss_pred EEecCCCCEEEEeeCCC-----eEEEEEee
Q psy11529 153 LDWHPNNHLLGCGSTDF-----KVRVFSAY 177 (244)
Q Consensus 153 ~~~~p~~~~l~~~~~dg-----~i~i~d~~ 177 (244)
+.+ ++++++.|+.++ .+.+||+.
T Consensus 193 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 193 TVH--DGRIIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp EEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred EEE--CCEEEEEeccCCCCccceEEEEECC
Confidence 222 567777776544 47777763
No 312
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.88 E-value=0.002 Score=44.65 Aligned_cols=150 Identities=13% Similarity=0.065 Sum_probs=83.6
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCc--------eEEEEeCCCCCeEEEEeCCccEEE
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLK--------VTGIDWAPNTNRIVTCSADRNAYV 81 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~d~~i~i 81 (244)
..+.+++|+|+|.+.++ .+|.++-.+..+ . .-..+.+.... -.++.|.|+|.+.++ .||.|.-
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t--~---~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr 111 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPT--H---DNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYK 111 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCC--S---TTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCC--C---CcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEE
Confidence 46779999999998777 567665555422 1 11111111222 368899999988777 5688877
Q ss_pred EeeeCCCCC---cee--eEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC-ce--EEEeeecCCCCceeEE
Q psy11529 82 WTQNNDDKK---WKP--TLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND-WW--VAKHIKKPIKSTITCL 153 (244)
Q Consensus 82 wd~~~~~~~---~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~--~~~~~~~~~~~~v~~~ 153 (244)
++ ..+.. +.. ...-...-..+..+.|.|+|.+.++. |+.+.-........ .+ .........-....-+
T Consensus 112 ~~--pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l 187 (236)
T 1tl2_A 112 AS--PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFL 187 (236)
T ss_dssp ES--CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEE
T ss_pred eC--CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEE
Confidence 77 42221 111 11111122567999999999887776 67643222111110 00 0111111222345557
Q ss_pred EecCCCCEEEEeeCCCeEEEEEe
Q psy11529 154 DWHPNNHLLGCGSTDFKVRVFSA 176 (244)
Q Consensus 154 ~~~p~~~~l~~~~~dg~i~i~d~ 176 (244)
.|.|++.+.++. +| ++|..
T Consensus 188 ~f~~~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 188 FFSSVGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp EECTTSCEEEEE--TT--EEEEE
T ss_pred EECCCCcEEEEe--CC--eEEec
Confidence 799999877765 77 44544
No 313
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.87 E-value=0.0048 Score=47.22 Aligned_cols=158 Identities=18% Similarity=0.096 Sum_probs=93.4
Q ss_pred CCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEec--cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC-c----
Q psy11529 64 APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR--INRAATCVKWSPLENKFAAGSGARLISVCYFESEND-W---- 136 (244)
Q Consensus 64 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~---- 136 (244)
+.+|..++.+- ++.||.-+ +..+..-..+.... .-..+..+..+|+|++||..+. ..|.|..+..+.. .
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~--i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYN--VLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEE--TTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred EcCCCEEEEEE-CCEEEEEE--CCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 34566666553 57788878 44333222333221 1236788999999999999864 5688888773321 0
Q ss_pred ----eEEEeeecC-----CCCceeEEEecCC---CCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec
Q psy11529 137 ----WVAKHIKKP-----IKSTITCLDWHPN---NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN 204 (244)
Q Consensus 137 ----~~~~~~~~~-----~~~~v~~~~~~p~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (244)
........+ ...+|..+.|+|- +..|++-..|+.|++||+....-+ +. ... ... ....+.
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~-P~---~L~---k~~-~~fg~d 176 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEK-PI---VLN---KPN-NSFGLD 176 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSC-CE---EES---CCC-SEEESC
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCC-Cc---chh---ccc-cccCCC
Confidence 001111111 2467999999995 458999999999999999541110 00 000 000 111222
Q ss_pred CCCCCCCCeEEEEEecCCCEEEEee--CCCcEEE
Q psy11529 205 NSSSGGGWIHSVAFSKDGNKLCWTS--HDGSINV 236 (244)
Q Consensus 205 ~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~v 236 (244)
.. ...|.+++|.+++-.|...+ ..|.|+-
T Consensus 177 ~~---~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 177 AR---VNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp SS---CCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred cc---cceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 22 46789999999887666644 6676543
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.86 E-value=0.0044 Score=46.42 Aligned_cols=115 Identities=10% Similarity=-0.007 Sum_probs=66.4
Q ss_pred eeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEE----eccCcceEEEEECCC---CCeEEEe---
Q psy11529 50 VLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVL----LRINRAATCVKWSPL---ENKFAAG--- 119 (244)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~--- 119 (244)
.+...-..-..++|.|+|..+++--..|.|++++ ..+++......+ .........|+++|+ +..|++.
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~--~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVD--AKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEEC--TTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEE--CCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 3333345568999999998777655489999988 555553222211 123456789999996 3444443
Q ss_pred eCCCeEEEEEeecCC----C---ceEEE-eeecCCCCceeEEEecCCCCEEEEee
Q psy11529 120 SGARLISVCYFESEN----D---WWVAK-HIKKPIKSTITCLDWHPNNHLLGCGS 166 (244)
Q Consensus 120 ~~d~~i~i~d~~~~~----~---~~~~~-~~~~~~~~~v~~~~~~p~~~~l~~~~ 166 (244)
..++.|.-|.+.... . ..... .........-..+.|.|||.++++.+
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 234556556555421 1 11111 11112223456799999998777654
No 315
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.85 E-value=0.0059 Score=47.70 Aligned_cols=110 Identities=11% Similarity=0.086 Sum_probs=62.2
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeecc------CCCceEEEEeCCC---CCeEEEEeC----
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG------HDLKVTGIDWAPN---TNRIVTCSA---- 75 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~---- 75 (244)
-.....++|.|+|+++++-...+.|++++..+ +....+..+.. .......|+|+|+ +..|+.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~--g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPES--GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTT--CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCC--CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 34567999999999887765445788887643 32233333321 2466789999995 444443332
Q ss_pred ---------CccEEEEeeeCCCCCc---eeeEE-Ee-ccCcceEEEEECCCCCeEEEee
Q psy11529 76 ---------DRNAYVWTQNNDDKKW---KPTLV-LL-RINRAATCVKWSPLENKFAAGS 120 (244)
Q Consensus 76 ---------d~~i~iwd~~~~~~~~---~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~ 120 (244)
...|.-++++...... ...+. +. ........++|.|+|.++++.+
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2345555521111111 11111 11 1123478999999998766644
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.84 E-value=0.0042 Score=45.63 Aligned_cols=145 Identities=10% Similarity=0.183 Sum_probs=75.4
Q ss_pred CCeEEEecC--CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC----ccEEEEeeeCCCCCceee
Q psy11529 21 RQQLAFTPN--NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD----RNAYVWTQNNDDKKWKPT 94 (244)
Q Consensus 21 ~~~l~~~~~--d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~ 94 (244)
+.+++.|+. ...+.+||... +.+..+..+.........+.+ ++..++.|+.+ ..+.+|| ..++++...
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d--~~~~~W~~~ 85 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKD--YSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYN--VVKDSWYSK 85 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTT--TEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEE--TTTTEEEEE
T ss_pred ceEEEEeCCCCCceEEEecCCC--CCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEe--CCCCeEEEC
Confidence 345666654 35788999877 656655444322222222332 46666777654 5678888 777766544
Q ss_pred EEEeccCcceEEEEECCCCCeEEEeeCC------CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC-
Q psy11529 95 LVLLRINRAATCVKWSPLENKFAAGSGA------RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST- 167 (244)
Q Consensus 95 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~- 167 (244)
..+.........+.+ +++.++.|+.+ ..+.+||..+.+ |...............+.+ ++++++.|+.
T Consensus 86 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 159 (306)
T 3ii7_A 86 LGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES--WHTKPSMLTQRCSHGMVEA--NGLIYVCGGSL 159 (306)
T ss_dssp ECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred CCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc--eEeCCCCcCCcceeEEEEE--CCEEEEECCCC
Confidence 332222222223333 56677777654 347777766553 3332221111112222222 5666666653
Q ss_pred --------CCeEEEEEee
Q psy11529 168 --------DFKVRVFSAY 177 (244)
Q Consensus 168 --------dg~i~i~d~~ 177 (244)
-..+.+||+.
T Consensus 160 ~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp SCTTTCEECCCEEEEETT
T ss_pred CCCCcccccceEEEeCCC
Confidence 2347788873
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.78 E-value=0.0034 Score=46.20 Aligned_cols=191 Identities=10% Similarity=0.044 Sum_probs=95.4
Q ss_pred cCCCCeEEEecC----CCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC----C-----ccEEEEee
Q psy11529 18 NNTRQQLAFTPN----NQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA----D-----RNAYVWTQ 84 (244)
Q Consensus 18 ~~~~~~l~~~~~----d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-----~~i~iwd~ 84 (244)
.-++..++.|+. -..+.+||... ..+..+..+.........+.. ++..++.|+. + ..+.+||
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d- 96 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSN--GTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYN- 96 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTT--TEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEE-
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCC--CeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEEC-
Confidence 346677888873 24688899877 555555433321111122222 4666666665 2 3577888
Q ss_pred eCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC-----CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529 85 NNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA-----RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN 159 (244)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 159 (244)
..+.++.....+.........+.+ +++.++.|+.+ ..+.+||..+.+ |...............+.+ ++
T Consensus 97 -~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~ 169 (308)
T 1zgk_A 97 -PMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVAVL--NR 169 (308)
T ss_dssp -TTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TT
T ss_pred -CCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEEEEE--CC
Confidence 677665443322222222223333 55666666543 346677765543 2222211111122222222 56
Q ss_pred CEEEEeeCC-----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC---
Q psy11529 160 HLLGCGSTD-----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD--- 231 (244)
Q Consensus 160 ~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--- 231 (244)
++++.|+.+ ..+.+||+.... ...+..+... ......+.+ ++++++.|+.+
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~----------------W~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~ 228 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNE----------------WRMITAMNTI---RSGAGVCVL--HNCIYAAGGYDGQD 228 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTE----------------EEECCCCSSC---CBSCEEEEE--TTEEEEECCBCSSS
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCe----------------EeeCCCCCCc---cccceEEEE--CCEEEEEeCCCCCC
Confidence 677777654 357788873322 1111111111 222222333 67777777654
Q ss_pred --CcEEEEeCCC
Q psy11529 232 --GSINVRMSQQ 241 (244)
Q Consensus 232 --g~i~vwd~~~ 241 (244)
..+.+||+++
T Consensus 229 ~~~~v~~yd~~~ 240 (308)
T 1zgk_A 229 QLNSVERYDVET 240 (308)
T ss_dssp BCCCEEEEETTT
T ss_pred ccceEEEEeCCC
Confidence 4588888765
No 318
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.77 E-value=0.0036 Score=47.15 Aligned_cols=106 Identities=10% Similarity=-0.003 Sum_probs=61.0
Q ss_pred CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceeeEEEe---ccCcceEEEEECCC---CCeEEEeeC-C-----C
Q psy11529 56 LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLL---RINRAATCVKWSPL---ENKFAAGSG-A-----R 123 (244)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----~ 123 (244)
..-..++|.|+|+++++ ..++.|.+++ +++........ ........++|+|+ +..|+++.. . +
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~----~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR----EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE----TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE----CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 34578999999985554 5668888887 23322111111 12456889999998 555555443 2 5
Q ss_pred eEEEEEeecCCCc--eEEEeeec---CCCCceeEEEecCCCCEEEEee
Q psy11529 124 LISVCYFESENDW--WVAKHIKK---PIKSTITCLDWHPNNHLLGCGS 166 (244)
Q Consensus 124 ~i~i~d~~~~~~~--~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~~ 166 (244)
.|..++....... ........ ........++|.|||.++++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 6777777643210 01111111 1112346899999997666643
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.77 E-value=0.0055 Score=44.89 Aligned_cols=189 Identities=12% Similarity=0.133 Sum_probs=92.2
Q ss_pred CCCeEEEecCC----CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-----ccEEEEeeeCCCCC
Q psy11529 20 TRQQLAFTPNN----QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-----RNAYVWTQNNDDKK 90 (244)
Q Consensus 20 ~~~~l~~~~~d----~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~ 90 (244)
++..++.|+.+ ..+.+||... ..+..+..+......-..+.. ++..++.|+.+ ..+.+|| ..+.+
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d--~~~~~ 88 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKE--ERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYD--PVKDQ 88 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEE--TTTTE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcC--CcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEEC--CCCCc
Confidence 34567777643 4688888877 555554433322111122222 56666677644 3578888 77766
Q ss_pred ceeeEEEeccCcceEEEEECCCCCeEEEeeCCC-----eEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 91 WKPTLVLLRINRAATCVKWSPLENKFAAGSGAR-----LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 91 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
+.....+.........+.+ +++.++.|+.++ .+.+||..+. .|...............+.+ ++++++.|
T Consensus 89 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~G 162 (302)
T 2xn4_A 89 WTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN--EWFHVAPMNTRRSSVGVGVV--GGLLYAVG 162 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred eeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC--eEeecCCCCCcccCceEEEE--CCEEEEEe
Confidence 5443322222222223333 556677776543 3556665544 23333222111112222222 56666666
Q ss_pred eCC-------CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCC-----Cc
Q psy11529 166 STD-------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD-----GS 233 (244)
Q Consensus 166 ~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~ 233 (244)
+.+ ..+.+||+.... ...+..+... ......+.+ ++++++.|+.+ ..
T Consensus 163 G~~~~~~~~~~~~~~yd~~~~~----------------W~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 221 (302)
T 2xn4_A 163 GYDVASRQCLSTVECYNATTNE----------------WTYIAEMSTR---RSGAGVGVL--NNLLYAVGGHDGPLVRKS 221 (302)
T ss_dssp CEETTTTEECCCEEEEETTTTE----------------EEEECCCSSC---CBSCEEEEE--TTEEEEECCBSSSSBCCC
T ss_pred CCCCCCCccccEEEEEeCCCCc----------------EEECCCCccc---cccccEEEE--CCEEEEECCCCCCcccce
Confidence 542 347788873221 1222222211 222222222 67777777764 35
Q ss_pred EEEEeCCC
Q psy11529 234 INVRMSQQ 241 (244)
Q Consensus 234 i~vwd~~~ 241 (244)
+.+||+++
T Consensus 222 ~~~yd~~~ 229 (302)
T 2xn4_A 222 VEVYDPTT 229 (302)
T ss_dssp EEEEETTT
T ss_pred EEEEeCCC
Confidence 88888765
No 320
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.72 E-value=0.0069 Score=44.77 Aligned_cols=148 Identities=11% Similarity=0.065 Sum_probs=71.8
Q ss_pred cCCCCeEEEecC----CC-------eEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC-------ccE
Q psy11529 18 NNTRQQLAFTPN----NQ-------EVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD-------RNA 79 (244)
Q Consensus 18 ~~~~~~l~~~~~----d~-------~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i 79 (244)
..++..++.|+. ++ .+.+||..+ ..+..+..+.........+.+ +++.++.|+.+ ..+
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVS--SEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTT--TEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCC--CcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 456777888873 11 267778766 555555443322222222223 46666666653 347
Q ss_pred EEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC------CCeEEEEEeecCCCceEEEeeecCCCCceeEE
Q psy11529 80 YVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG------ARLISVCYFESENDWWVAKHIKKPIKSTITCL 153 (244)
Q Consensus 80 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 153 (244)
.+|| ..+.++.....++...... +++. .+++.++.|+. -..+.+||..+.+ |...............+
T Consensus 130 ~~yd--~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~ 203 (318)
T 2woz_A 130 LCYD--PVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAPMKTPRSMFGVA 203 (318)
T ss_dssp EEEE--TTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEE
T ss_pred EEEe--CCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE--EEECCCCCCCcccceEE
Confidence 7788 6776654332211111111 2222 35666666653 2347777766553 33332221111122222
Q ss_pred EecCCCCEEEEeeCCC-----eEEEEEee
Q psy11529 154 DWHPNNHLLGCGSTDF-----KVRVFSAY 177 (244)
Q Consensus 154 ~~~p~~~~l~~~~~dg-----~i~i~d~~ 177 (244)
.+ ++++++.|+.++ .+.+||+.
T Consensus 204 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 230 (318)
T 2woz_A 204 IH--KGKIVIAGGVTEDGLSASVEAFDLK 230 (318)
T ss_dssp EE--TTEEEEEEEEETTEEEEEEEEEETT
T ss_pred EE--CCEEEEEcCcCCCCccceEEEEECC
Confidence 22 566777776432 46677763
No 321
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.72 E-value=0.0043 Score=45.65 Aligned_cols=138 Identities=9% Similarity=-0.046 Sum_probs=74.8
Q ss_pred EEEcCCCCeEEEecCC--------------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEe--CCcc
Q psy11529 15 HAWNNTRQQLAFTPNN--------------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCS--ADRN 78 (244)
Q Consensus 15 ~~~~~~~~~l~~~~~d--------------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~ 78 (244)
--++++|.+|+.+... ..|+..++++ .+ ...+.. .. +..|++++++|+-.. .++.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg--~~---~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~ 128 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG--HG---STVLDP--DP--CIYASLIGNYIYYLHYDTQTA 128 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS--CC---CEEEEC--SC--EEEEEEETTEEEEEEESSSSC
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC--Cc---ceEeec--CC--ccEEEEeCCEEEEEeecCCCC
Confidence 3467889988877543 3566666665 32 222221 11 236778888888765 3455
Q ss_pred EEEEeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecC
Q psy11529 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP 157 (244)
Q Consensus 79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 157 (244)
-.||.+++..... ..+..+.. .+++|+++.|+..+. ...|.+.+++.... ..... +... ..++|
T Consensus 129 ~~Iy~~~~dGs~~---~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~----~~l~~---~~~~-~~~~P 193 (302)
T 3s25_A 129 TSLYRIRIDGEEK---KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE----ALFYD---CNCY-KPVVL 193 (302)
T ss_dssp EEEEEEETTSCCC---EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE----EEEEC---SCEE-EEEEE
T ss_pred ceEEEEECCCCCe---EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE----EEEeC---CCcc-ceeee
Confidence 5566543554332 22222222 456778888887665 45666655554432 22222 1222 23569
Q ss_pred CCCEEEEeeCCC--eEEEEEe
Q psy11529 158 NNHLLGCGSTDF--KVRVFSA 176 (244)
Q Consensus 158 ~~~~l~~~~~dg--~i~i~d~ 176 (244)
++.+|+-....+ .|..-++
T Consensus 194 ~g~~iy~t~~~~~~~I~~~~l 214 (302)
T 3s25_A 194 DDTNVYYMDVNRDNAIVHVNI 214 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEECS
T ss_pred cCCEEEEEEcCCCcEEEEEEC
Confidence 888887765443 4444444
No 322
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.70 E-value=0.0082 Score=44.83 Aligned_cols=171 Identities=8% Similarity=0.099 Sum_probs=98.1
Q ss_pred eEEeCCCceEEEEEcCC----CCe--EEEe--cC--CCeEEEeeeccCCCcceeeeeecc------CC-CceEEEEe--C
Q psy11529 4 VYSFGINPVTTHAWNNT----RQQ--LAFT--PN--NQEVHLYQYEKAANDWSQLDVLDG------HD-LKVTGIDW--A 64 (244)
Q Consensus 4 ~~~~~~~~v~~~~~~~~----~~~--l~~~--~~--d~~v~v~~~~~~~~~~~~~~~~~~------~~-~~v~~~~~--~ 64 (244)
+..+..+.++.+..-|+ |+. ++.+ .. +++|.+|++....+ .+..+.. .. ..+..+++ +
T Consensus 62 l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~---~l~~i~~~~~pv~t~~~~pyGlcly~~ 138 (355)
T 3amr_A 62 LHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---TLQSMTDPDHPIATAINEVYGFTLYHS 138 (355)
T ss_dssp EEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC---CEEECSCTTSCEECCCSSCCCEEEEEC
T ss_pred EEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC---ceeeccccccCcCCCCCCeeEEEEEec
Confidence 33444467777777663 221 3333 33 57999998853212 2333311 11 45566777 7
Q ss_pred CC-CC-eEEEEeCCccEEEEeeeC-CCCCceee-EEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCC--CceE
Q psy11529 65 PN-TN-RIVTCSADRNAYVWTQNN-DDKKWKPT-LVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEN--DWWV 138 (244)
Q Consensus 65 ~~-~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~ 138 (244)
|. ++ +++....+|.+..|++.. ..+..... .......+.+..|...+....|+++-++.-|..++.+... ....
T Consensus 139 ~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~ 218 (355)
T 3amr_A 139 QKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTV 218 (355)
T ss_dssp TTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEE
T ss_pred CCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceE
Confidence 74 44 577778899999999521 22221111 1222345688899999988899999988665454433322 1011
Q ss_pred EEee-ecCCCCceeEEEe--cCCCC-EEEEee-CCCeEEEEEee
Q psy11529 139 AKHI-KKPIKSTITCLDW--HPNNH-LLGCGS-TDFKVRVFSAY 177 (244)
Q Consensus 139 ~~~~-~~~~~~~v~~~~~--~p~~~-~l~~~~-~dg~i~i~d~~ 177 (244)
.... .......+..+++ .++++ +|++++ .+.+..+||..
T Consensus 219 v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 219 IDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 1111 1222346888888 45555 666666 56799999984
No 323
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.68 E-value=0.0086 Score=49.51 Aligned_cols=152 Identities=11% Similarity=0.070 Sum_probs=82.9
Q ss_pred CCCCeEEEecCC----CeEEEeeeccCCCcceeee-e-----eccCCCceEEEEeCCCCCeEEEEeCC------ccEEEE
Q psy11529 19 NTRQQLAFTPNN----QEVHLYQYEKAANDWSQLD-V-----LDGHDLKVTGIDWAPNTNRIVTCSAD------RNAYVW 82 (244)
Q Consensus 19 ~~~~~l~~~~~d----~~v~v~~~~~~~~~~~~~~-~-----~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iw 82 (244)
.++..++.|+.+ ..+.+||... +.|..+. . .......-..+.+..+++.++.|+.+ ..+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~--~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHY--DKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECS--SCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCC--CeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence 456777788743 4688899877 6666554 2 11111122333333267777777653 347788
Q ss_pred eeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEeeCCC--eEEEEEeecCCCceEEEee---ecCCCCceeEEEecC
Q psy11529 83 TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR--LISVCYFESENDWWVAKHI---KKPIKSTITCLDWHP 157 (244)
Q Consensus 83 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~~p 157 (244)
| ..+.++.....+.. ...-.+++...+++.++.|+.++ .+.+||..+.. |..... ..........+.+..
T Consensus 474 d--~~t~~W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~ 548 (695)
T 2zwa_A 474 D--MKTREWSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDP 548 (695)
T ss_dssp E--TTTTEEEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEET
T ss_pred e--CCCCcEEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeC
Confidence 8 67766544322221 12222333334777888877654 57777766543 333322 111122334456665
Q ss_pred C-CCEEEEeeC--C-----CeEEEEEee
Q psy11529 158 N-NHLLGCGST--D-----FKVRVFSAY 177 (244)
Q Consensus 158 ~-~~~l~~~~~--d-----g~i~i~d~~ 177 (244)
+ +++++.|+. + ..+.+||+.
T Consensus 549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~ 576 (695)
T 2zwa_A 549 VSKQGIILGGGFMDQTTVSDKAIIFKYD 576 (695)
T ss_dssp TTTEEEEECCBCTTSSCBCCEEEEEEEC
T ss_pred CCCEEEEECCcCCCCCeeeCcEEEEEcc
Confidence 5 667777765 2 358888884
No 324
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.66 E-value=0.016 Score=47.21 Aligned_cols=185 Identities=13% Similarity=0.084 Sum_probs=112.0
Q ss_pred eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEE-eCCccEEEEeeeCCCCCceeeEEEeccC
Q psy11529 23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC-SADRNAYVWTQNNDDKKWKPTLVLLRIN 101 (244)
Q Consensus 23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 101 (244)
+|+.+ ..+.|+..++++ ........+.+ -..+..++|++.+..|+.+ ..++.|..++ +...... .. .....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~--~~~~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~--~~g~~~~-~v-~~~g~ 79 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLET--NNNNVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAF--MNGSALE-HV-VEFGL 79 (628)
T ss_dssp EEEEE-ETTEEEEEESSC--TTCEEECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEE--TTSCSCE-EE-ECSSC
T ss_pred EEEEE-eCCcEEEEECCC--CCcceEEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEE--CCCCCcE-EE-EeCCC
Confidence 55555 457899999976 32222222322 3457899999966666544 4578888888 5543322 22 22223
Q ss_pred cceEEEEECCCCCeEEEe-eCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeC--CCeEEEEEeee
Q psy11529 102 RAATCVKWSPLENKFAAG-SGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST--DFKVRVFSAYI 178 (244)
Q Consensus 102 ~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--dg~i~i~d~~~ 178 (244)
.....+++.+.+..|+.+ ...+.|.+.+++.... .......-.....++++|....|+.... .+.|...++.
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~----~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d- 154 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR----QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD- 154 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC----EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE----EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC-
Confidence 457788998765555544 4467888888776543 1222233356789999996555555442 4567777652
Q ss_pred cccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEee-CCCcEEEEeCCC
Q psy11529 179 KDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS-HDGSINVRMSQQ 241 (244)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~ 241 (244)
+.....+... ......++++++++.|+.+. ..+.|...|+..
T Consensus 155 ------------------G~~~~~l~~~---~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 155 ------------------GSERTTLVPN---VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp ------------------SCSCEEEECS---CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ------------------CCceEEEECC---CCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 2222222222 56778999999877666664 456788887753
No 325
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.65 E-value=0.009 Score=45.03 Aligned_cols=105 Identities=16% Similarity=0.021 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCCcceeeeee----ccCCCceEEEEeCCC---CCeEEEE-eC-----
Q psy11529 10 NPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVL----DGHDLKVTGIDWAPN---TNRIVTC-SA----- 75 (244)
Q Consensus 10 ~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~-~~----- 75 (244)
.....++|.|+|+ ++++ ...|.|++++..+ .....+..+ .........++|+|+ +..|+.+ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g--~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGK--GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETTT--EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCC--ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 4567899999999 5554 5678999887543 100111111 122456789999995 4444443 22
Q ss_pred --CccEEEEeeeCCCC--CceeeE-EEec------cCcceEEEEECCCCCeEEEe
Q psy11529 76 --DRNAYVWTQNNDDK--KWKPTL-VLLR------INRAATCVKWSPLENKFAAG 119 (244)
Q Consensus 76 --d~~i~iwd~~~~~~--~~~~~~-~~~~------~~~~v~~~~~~~~~~~l~~~ 119 (244)
...|..++ .... ...... .+.. .......++|.|+|.++++.
T Consensus 95 ~~~~~v~r~~--~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 95 KAGTAVGYGR--LSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp CEEEEEEEEE--ECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred CceeEEEEEE--ECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence 23566666 3322 111111 1111 11224679999999655554
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.57 E-value=0.007 Score=45.63 Aligned_cols=107 Identities=7% Similarity=-0.020 Sum_probs=58.3
Q ss_pred ceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCcee-eEE----EeccCcceEEEEECCC---CCeEEEeeC-------
Q psy11529 57 KVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKP-TLV----LLRINRAATCVKWSPL---ENKFAAGSG------- 121 (244)
Q Consensus 57 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~----~~~~~~~v~~~~~~~~---~~~l~~~~~------- 121 (244)
....++|.|+|++|+.+...+.|++++ .. +.... ... ..........++++|+ +..|+++..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~--~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQ--AG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEE--TT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEe--CC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 457899999998444555678999888 43 32110 000 0112345689999996 455554432
Q ss_pred -CCeEEEEEeecCCC-ceEEEeee--cC----CCCceeEEEecCCCCEEEEee
Q psy11529 122 -ARLISVCYFESEND-WWVAKHIK--KP----IKSTITCLDWHPNNHLLGCGS 166 (244)
Q Consensus 122 -d~~i~i~d~~~~~~-~~~~~~~~--~~----~~~~v~~~~~~p~~~~l~~~~ 166 (244)
...|..+++..... ........ .+ .......+.|.|||.++++.+
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 23566666654321 11111111 11 112346799999996555543
No 327
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.55 E-value=0.0097 Score=43.77 Aligned_cols=134 Identities=9% Similarity=0.082 Sum_probs=70.5
Q ss_pred cCCCCeEEEec--CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCC--------------ccEEE
Q psy11529 18 NNTRQQLAFTP--NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD--------------RNAYV 81 (244)
Q Consensus 18 ~~~~~~l~~~~--~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~i 81 (244)
+.++..|.... .++.|...+.++ . ....+.. .. +--+++++.+|+.+... ..|+.
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg--~---~~~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDG--S---NIHKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTS--C---SCEEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCC--C---CCEEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence 45667666653 245566666555 3 2223321 11 23457888888876543 34555
Q ss_pred EeeeCCCCCceeeEEEeccCcceEEEEECCCCCeEEEee--CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCC
Q psy11529 82 WTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS--GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNN 159 (244)
Q Consensus 82 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 159 (244)
.+ +...+... +... . ...|+++++.|+... .++.-.||.++..... ...... + .+ ..++|++
T Consensus 93 i~--~dg~~~~~---l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~-~--~~--~~~~~~g 156 (302)
T 3s25_A 93 IK--RNGHGSTV---LDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKN-H--YL--FTCNTSD 156 (302)
T ss_dssp EE--TTSCCCEE---EECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEES-S--CC--CCSEEET
T ss_pred Ee--CCCCcceE---eecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeC-C--Cc--eEeeEEC
Confidence 55 55554221 2111 1 236777888988876 3444455555443220 112222 1 11 4567888
Q ss_pred CEEEEeeC-CCeEEEEEe
Q psy11529 160 HLLGCGST-DFKVRVFSA 176 (244)
Q Consensus 160 ~~l~~~~~-dg~i~i~d~ 176 (244)
+.|+-.+. ...|.+.++
T Consensus 157 ~~iy~t~~g~~~Iy~~~l 174 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDT 174 (302)
T ss_dssp TEEEEECTTTCCEEEEET
T ss_pred CEEEEEeCCCceEEEEEC
Confidence 88876654 456766665
No 328
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.55 E-value=0.0091 Score=41.43 Aligned_cols=109 Identities=12% Similarity=0.035 Sum_probs=62.2
Q ss_pred CceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCc---ee-eEEE-eccCcceEEEEECCCCCeEEEeeCCCeEEEEEe
Q psy11529 56 LKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW---KP-TLVL-LRINRAATCVKWSPLENKFAAGSGARLISVCYF 130 (244)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~-~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 130 (244)
..+..++|+|+|.+.+. .+|.+.-.+ ..+... .. ...+ ...-....++.|.|+|.+.++ .||.|.-++-
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~--~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGT--PPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEES--CCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEEC--CCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 36779999999886665 677655555 433211 00 1111 111122578999999988877 4587766553
Q ss_pred ecCCC-ceEE--EeeecCCCCceeEEEecCCCCEEEEeeCCCeEE
Q psy11529 131 ESEND-WWVA--KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVR 172 (244)
Q Consensus 131 ~~~~~-~~~~--~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~ 172 (244)
.+... .|.- ...-...=..+..+.+.|+|.+.++. |+.++
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 22211 1100 11111111467999999999877776 77743
No 329
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.44 E-value=0.034 Score=45.32 Aligned_cols=155 Identities=8% Similarity=0.009 Sum_probs=93.2
Q ss_pred CceEEEEEcCCCCeEEEe-cCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEE-EEeCCccEEEEeeeCC
Q psy11529 10 NPVTTHAWNNTRQQLAFT-PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV-TCSADRNAYVWTQNND 87 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~-~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~ 87 (244)
..+.+++|.+.+..|..+ ...+.|+.+++++ .. ....+...-.....+++...+..|+ +-+..+.|.+.+ +.
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g--~~--~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~--~~ 422 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG--SG--SQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR--LN 422 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTS--CS--CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE--TT
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCC--Cc--cEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEe--CC
Confidence 346788898855554444 4567888888876 21 1222222234567888887555444 444578899988 54
Q ss_pred CCCceeeEEEeccCcceEEEEECCCCCeEEEeeC--CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG--ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
... ...+ ....-.....+++.|....|+.+.. ...|...+++.... .......-...+.+++++++..|+.+
T Consensus 423 G~~-~~~l-~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~----~~l~~~~l~~P~GlalD~~~~~LY~a 496 (619)
T 3s94_A 423 GTM-RKIL-ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR----VVLVNTSLGWPNGLALDYDEGKIYWG 496 (619)
T ss_dssp SCS-CEEE-ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CCe-EEEE-EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc----EEEEeCCCCCCeeeEEcccCCEEEEE
Confidence 432 2222 2234467889999997555555543 35566555554433 12222233577899999977666665
Q ss_pred e-CCCeEEEEEe
Q psy11529 166 S-TDFKVRVFSA 176 (244)
Q Consensus 166 ~-~dg~i~i~d~ 176 (244)
. ..+.|..+++
T Consensus 497 D~~~~~I~~~~~ 508 (619)
T 3s94_A 497 DAKTDKIEVMNT 508 (619)
T ss_dssp ETTTTEEEEEES
T ss_pred ECCCCEEEEEec
Confidence 4 4567888887
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.41 E-value=0.02 Score=42.17 Aligned_cols=185 Identities=11% Similarity=0.012 Sum_probs=89.9
Q ss_pred eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC-----C------ccEEEEeeeCCCCCc
Q psy11529 23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA-----D------RNAYVWTQNNDDKKW 91 (244)
Q Consensus 23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d------~~i~iwd~~~~~~~~ 91 (244)
+++.|+ ..+.+||..+ +.+.. ..+..............++..++.|+. . ..+..|| ..++++
T Consensus 7 l~~~GG--~~~~~yd~~~--~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d--~~~~~W 79 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAA--NECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFD--HLDSEW 79 (315)
T ss_dssp EEEEET--TEEEEEETTT--TEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEE--TTTTEE
T ss_pred EEEEcC--CceEEECCCC--CeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEec--CCCCeE
Confidence 455565 5799999987 65654 333322222223333446777777773 1 1266777 777665
Q ss_pred eeeEEEeccCcceEEEEECCCCCeEEEeeCC--------CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 92 KPTLVLLRINRAATCVKWSPLENKFAAGSGA--------RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 92 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
.....++........+.+ +++.++.|+.+ ..+.+||..+.+ |............. +++. -++++++
T Consensus 80 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~-~~~~-~~~~iyv 153 (315)
T 4asc_A 80 LGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGH-TVLS-HMDLVYV 153 (315)
T ss_dssp EECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSC-EEEE-ETTEEEE
T ss_pred EECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccce-eEEE-ECCEEEE
Confidence 433222111111122223 45666666632 346777766542 33222211111122 2222 3566777
Q ss_pred EeeC-C-----CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCC-----
Q psy11529 164 CGST-D-----FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG----- 232 (244)
Q Consensus 164 ~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----- 232 (244)
.|+. + ..+.+||+.+.. .+.+..+... ......+.+ ++++++.|+.++
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~----------------W~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~ 212 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFE----------------WKELAPMQTA---RSLFGATVH--DGRIIVAAGVTDTGLTS 212 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTE----------------EEECCCCSSC---CBSCEEEEE--TTEEEEEEEECSSSEEE
T ss_pred EeCCCCCCcccceEEEEeCCCCe----------------EEECCCCCCc---hhceEEEEE--CCEEEEEeccCCCCccc
Confidence 7765 2 357888874321 1122212111 222222222 677777777654
Q ss_pred cEEEEeCCC
Q psy11529 233 SINVRMSQQ 241 (244)
Q Consensus 233 ~i~vwd~~~ 241 (244)
.+.+||+++
T Consensus 213 ~~~~yd~~~ 221 (315)
T 4asc_A 213 SAEVYSITD 221 (315)
T ss_dssp EEEEEETTT
T ss_pred eEEEEECCC
Confidence 477888765
No 331
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.33 E-value=0.014 Score=48.21 Aligned_cols=154 Identities=12% Similarity=0.239 Sum_probs=83.3
Q ss_pred CCCeEEEecCC------CeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCc--cEEEEeeeCCCCCc
Q psy11529 20 TRQQLAFTPNN------QEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADR--NAYVWTQNNDDKKW 91 (244)
Q Consensus 20 ~~~~l~~~~~d------~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~ 91 (244)
+++.++.|+.+ +.+.+||..+ ..|..+..+......-.++.+ .+++.++.|+.++ .+.+|| ..+..+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t--~~W~~~~~~p~~R~~h~~~~~-~~~~iyv~GG~~~~~~v~~yd--~~t~~W 525 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKT--REWSMIKSLSHTRFRHSACSL-PDGNVLILGGVTEGPAMLLYN--VTEEIF 525 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTT--TEEEECCCCSBCCBSCEEEEC-TTSCEEEECCBCSSCSEEEEE--TTTTEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCC--CcEEECCCCCCCcccceEEEE-cCCEEEEECCCCCCCCEEEEE--CCCCce
Confidence 67777777643 3578888877 666665444322222222322 3677778877644 688888 777765
Q ss_pred eeeEE---EeccCcceEEEEECCC-CCeEEEeeC--C-----CeEEEEEeecCCC----ceEEEeeecCCCCceeEEEec
Q psy11529 92 KPTLV---LLRINRAATCVKWSPL-ENKFAAGSG--A-----RLISVCYFESEND----WWVAKHIKKPIKSTITCLDWH 156 (244)
Q Consensus 92 ~~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----~~i~i~d~~~~~~----~~~~~~~~~~~~~~v~~~~~~ 156 (244)
..... ..........+.+..+ ++.++.|+. + ..+.+||+.+..- .|............-.+++..
T Consensus 526 ~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~ 605 (695)
T 2zwa_A 526 KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI 605 (695)
T ss_dssp EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE
T ss_pred EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe
Confidence 43322 1111222333555555 666777765 2 4588888887751 022222111111111233333
Q ss_pred CCCCEEEEeeCC--------CeEEEEEeee
Q psy11529 157 PNNHLLGCGSTD--------FKVRVFSAYI 178 (244)
Q Consensus 157 p~~~~l~~~~~d--------g~i~i~d~~~ 178 (244)
.++++++.|+.+ ..+.+||+.+
T Consensus 606 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 606 TPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred CCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 346777777743 4588898743
No 332
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.31 E-value=0.075 Score=46.62 Aligned_cols=193 Identities=7% Similarity=0.036 Sum_probs=112.5
Q ss_pred CCeEEEec----------CCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCC
Q psy11529 21 RQQLAFTP----------NNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKK 90 (244)
Q Consensus 21 ~~~l~~~~----------~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 90 (244)
..+|++|+ ..|.|.+|++.+ ++++.+.... .+++|++++-- +| +|++|- ..++++|+ +...+
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~--~kL~lv~~~~-v~g~v~al~~~-~g-~Lla~i-g~~l~vy~--l~~~~ 915 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSD--GKLQTVAEKE-VKGAVYSMVEF-NG-KLLASI-NSTVRLYE--WTTEK 915 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEET--TEEEEEEEEE-ESSCEEEEEEE-TT-EEEEEE-TTEEEEEE--ECTTS
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEEC--CEEEEEEEEE-cCCcCEEEeee-CC-EEEEEc-CCEEEEEE--CCCCc
Confidence 46788775 358899999975 5445554444 57888888633 35 444443 47899999 44443
Q ss_pred ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCe
Q psy11529 91 WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFK 170 (244)
Q Consensus 91 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 170 (244)
... ....... .+..+.....++++++|..-..+.++.++.... .....-......+++++.+-.++ .++.+..+|.
T Consensus 916 ~L~-~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~-~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gN 991 (1158)
T 3ei3_A 916 ELR-TECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG-NFEEIARDFNPNWMSAVEILDDD-NFLGAENAFN 991 (1158)
T ss_dssp CEE-EEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTT-EEEEEEECCSCBCEEEEEEEETT-EEEEEETTSE
T ss_pred eEE-EEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCC-eEEEEEeecccccEEEEEEEccC-cEEEEcCCCc
Confidence 221 1111121 122223323577999999888888887776543 12222234455788898887655 6777889999
Q ss_pred EEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEE---ecC---------CCEEEEeeCCCcEEEE
Q psy11529 171 VRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAF---SKD---------GNKLCWTSHDGSINVR 237 (244)
Q Consensus 171 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~---------~~~l~~~~~dg~i~vw 237 (244)
+.+.......... . ..........+.. +..|+++.- .+. ...++.++.+|.|.+.
T Consensus 992 l~vl~~~~~~~~~------~--~~~~L~~~~~fhl----G~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 992 LFVCQKDSAATTD------E--ERQHLQEVGLFHL----GEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp EEEEEECTTCCST------T--GGGBEEEEEEEEC----SSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred EEEEecCCCCCCc------c--ccceeeeEEEEeC----CCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence 9998874321110 0 0011222333433 455666652 222 2357778889988764
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.23 E-value=0.037 Score=41.47 Aligned_cols=152 Identities=10% Similarity=0.087 Sum_probs=82.6
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeee----ccCCCceEEEEeCCC---CCeEEEE---eCCcc
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVL----DGHDLKVTGIDWAPN---TNRIVTC---SADRN 78 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~---~~d~~ 78 (244)
-..-..++|.|||+++++--..|.|++++..+ +....+..+ .........++++|+ ...|+.. ..++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~--g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKT--GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTT--CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCC--CcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 45678999999999887765589999887654 322223222 223567899999995 3344332 23455
Q ss_pred EEEEeeeCCCC-----C---ceeeEE-Ee-ccCcceEEEEECCCCCeEEEeeCCC-----------eEEEEEeecCCCc-
Q psy11529 79 AYVWTQNNDDK-----K---WKPTLV-LL-RINRAATCVKWSPLENKFAAGSGAR-----------LISVCYFESENDW- 136 (244)
Q Consensus 79 i~iwd~~~~~~-----~---~~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~d~-----------~i~i~d~~~~~~~- 136 (244)
|.-|. ...+ . ....+. +. ........+.|.|+|.++++.+..+ .=+||.++.....
T Consensus 109 v~R~~--~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 109 IVRML--YDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEE--BCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred EEEEE--eCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 65565 4331 1 111111 11 1122456799999998766644211 1123333322210
Q ss_pred -----eEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 137 -----WVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 137 -----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
........++ .....++|+|+|.+.++-
T Consensus 187 ~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 187 PGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp TTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEE
T ss_pred CCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEe
Confidence 0001122233 356789999988766553
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.16 E-value=0.041 Score=40.56 Aligned_cols=143 Identities=8% Similarity=-0.032 Sum_probs=67.7
Q ss_pred CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeC----Cc-------cEEEEeeeCCCCC
Q psy11529 22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA----DR-------NAYVWTQNNDDKK 90 (244)
Q Consensus 22 ~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~-------~i~iwd~~~~~~~ 90 (244)
..++.|+. .+..||... +.+.. .................++..++.|+. ++ .+..|| ..+.+
T Consensus 17 ~i~~~GG~--~~~~yd~~~--~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d--~~~~~ 89 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPME--NECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLD--NVSSE 89 (318)
T ss_dssp EEEEECSS--EEEEEETTT--TEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEE--TTTTE
T ss_pred hhhhcccc--ceEEECCCC--Cceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEe--CCCCc
Confidence 34555653 488899877 55554 222211122222233446777777773 11 166777 67766
Q ss_pred ceeeEEEeccCcceEEEEECCCCCeEEEeeCC-------CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 91 WKPTLVLLRINRAATCVKWSPLENKFAAGSGA-------RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 91 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
+.....+.........+.+ +++.++.|+.+ ..+.+||..+. .|............. +++. .++++++
T Consensus 90 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~-~~~~-~~~~iyv 163 (318)
T 2woz_A 90 WVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA--KWSEVKNLPIKVYGH-NVIS-HNGMIYC 163 (318)
T ss_dssp EEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT--EEEEECCCSSCEESC-EEEE-ETTEEEE
T ss_pred EEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC--CEeECCCCCCccccc-EEEE-ECCEEEE
Confidence 5433222211122222233 45666776653 23555555443 233322111111111 2222 3566777
Q ss_pred EeeC------CCeEEEEEee
Q psy11529 164 CGST------DFKVRVFSAY 177 (244)
Q Consensus 164 ~~~~------dg~i~i~d~~ 177 (244)
.|+. -..+.+||+.
T Consensus 164 ~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 164 LGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp ECCEESSSCBCCCEEEEETT
T ss_pred EcCCCCCCCccceEEEEcCC
Confidence 7653 1358888873
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.14 E-value=0.03 Score=42.03 Aligned_cols=98 Identities=9% Similarity=0.072 Sum_probs=50.8
Q ss_pred CCCeEEEecC-CCeEEEeeeccCCCcceeeeeec-cCCCceEEEEeCCCCCeEEEEeC-C---------ccEEEEeeeCC
Q psy11529 20 TRQQLAFTPN-NQEVHLYQYEKAANDWSQLDVLD-GHDLKVTGIDWAPNTNRIVTCSA-D---------RNAYVWTQNND 87 (244)
Q Consensus 20 ~~~~l~~~~~-d~~v~v~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------~~i~iwd~~~~ 87 (244)
+++.++.|+. ...+.+||.......|..+..+. ........+.+ +++.++.|+. + ..+.+|| ..
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd--~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYN--PK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEE--TT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEe--CC
Confidence 6677777764 35788888863224555554444 11122222233 4666666665 2 4578888 77
Q ss_pred CCCceeeEEEeccCcceEEEEECCCCCeEEEeeCC
Q psy11529 88 DKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA 122 (244)
Q Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 122 (244)
+.++.....+......-.++.. .+++.++.|+.+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred CCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 7765443322211111122222 456777777754
No 336
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.05 E-value=0.055 Score=40.05 Aligned_cols=201 Identities=11% Similarity=0.109 Sum_probs=118.8
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccC----CCceEEEEeCCCCCeEEEEeC-------Cc
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH----DLKVTGIDWAPNTNRIVTCSA-------DR 77 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------d~ 77 (244)
.++|.--.|-.+. .|+..+ +..|+-|++++.. .+.+.+..| ...|..-..+++.++++..+- .|
T Consensus 106 ~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s---~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G 180 (365)
T 2xzh_A 106 TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 180 (365)
T ss_dssp SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTC---CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred CCccEEEEecCCC-eEEEEc-CCcEEEEcccCCC---CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccce
Confidence 3556666665443 444443 4679999997622 455555544 356777778888898765432 47
Q ss_pred cEEEEeeeCCCCCceeeEEEeccCcceEEEEECCC--C-CeEEEeeC---CCeEEEEEeecC---CCce--EEEeeecC-
Q psy11529 78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL--E-NKFAAGSG---ARLISVCYFESE---NDWW--VAKHIKKP- 145 (244)
Q Consensus 78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~l~~~~~---d~~i~i~d~~~~---~~~~--~~~~~~~~- 145 (244)
.+.+|. .+.+. ...+.+|......+....+ . +.++.+.. .+.++|.++... ...+ .......+
T Consensus 181 ~mQLYS--~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fpp 255 (365)
T 2xzh_A 181 AMQLYS--VDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 255 (365)
T ss_dssp EEEEEE--TTTTE---EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCT
T ss_pred eEEEEe--ecccc---cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCc
Confidence 888999 55543 3344556544433333211 1 23343333 257888887543 1101 11111122
Q ss_pred --CCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC
Q psy11529 146 --IKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN 223 (244)
Q Consensus 146 --~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 223 (244)
..+-.-++..++.-..++.-+.-|.|++||+ .++.++..-+-. ...|..-+-+....
T Consensus 256 ea~~DFPVamqvs~kygviyviTK~G~ihlyDl------------------eTgt~i~~nrIS---~d~iF~ta~~~~~~ 314 (365)
T 2xzh_A 256 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDL------------------ETGTCIYMNRIS---GETIFVTAPHEATA 314 (365)
T ss_dssp TCTTCCEEEEEEETTTTEEEEEETTSEEEEEET------------------TTCCEEEEEECC---SSCEEEEEEEGGGT
T ss_pred cccCCceEEEEecccCCEEEEEeCCcEEEEEEc------------------ccCcEEEEeccC---CCceEEecccCCCC
Confidence 1344567888887778888889999999999 778888776665 66666555555444
Q ss_pred EEEEeeCCCcEEEEeCC
Q psy11529 224 KLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 224 ~l~~~~~dg~i~vwd~~ 240 (244)
=++.....|.|.--.++
T Consensus 315 Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 315 GIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp EEEEEETTCEEEEEEEC
T ss_pred cEEEEcCCCEEEEEEEC
Confidence 45555577776655443
No 337
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.88 E-value=0.079 Score=39.25 Aligned_cols=204 Identities=9% Similarity=0.105 Sum_probs=120.2
Q ss_pred EEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCcee
Q psy11529 14 THAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKP 93 (244)
Q Consensus 14 ~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 93 (244)
+.-.+|..+.||.-. ...++|+|++. + ..+.... ....|.--.|-.+ +.|+..+ +..|+-|+ ++.. ..+
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnlet--K--~klks~~-~~e~VvfWkWis~-~~L~lVT-~taVyHWs--~~~~-s~P 139 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEM--K--SKMKAHT-MTDDVTFWKWISL-NTVALVT-DNAVYHWS--MEGE-SQP 139 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTT--T--EEEEEEE-CSSCEEEEEECSS-SEEEEEE-SSEEEEEE--SSTT-CCC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHH--h--hhhccee-cCCccEEEEecCC-CeEEEEc-CCcEEEEc--ccCC-CCC
Confidence 345688888777765 68999999988 4 4555554 3567877788653 3455444 56899999 4432 223
Q ss_pred eEEEecc----CcceEEEEECCCCCeEEEeeC-------CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC---C
Q psy11529 94 TLVLLRI----NRAATCVKWSPLENKFAAGSG-------ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN---N 159 (244)
Q Consensus 94 ~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~ 159 (244)
...+..| ..+|..-..+++.++++..+- .|.+.+|..+... .+..++|.+....+.+.-+ .
T Consensus 140 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-----sQ~ieGhaa~F~~~~~~g~~~~~ 214 (365)
T 2xzh_A 140 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHAASFAQFKMEGNAEES 214 (365)
T ss_dssp EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-----EEEECCSEEEEEEECCTTCSSCE
T ss_pred ceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-----cceeeeeeeeeEEEecCCCCCCc
Confidence 3333333 356777778889888766542 3667788776653 4666666444333333211 1
Q ss_pred CEEEEeeC---CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEE
Q psy11529 160 HLLGCGST---DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236 (244)
Q Consensus 160 ~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 236 (244)
++++.+.. .++++|.++..... .... -..+....+-.......-.-++..|+.-..++.-+.-|.|++
T Consensus 215 ~lf~fa~r~~~g~kLhIiEi~~~~~----~~~~-----f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihl 285 (365)
T 2xzh_A 215 TLFCFAVRGQAGGKLHIIEVGTPPT----GNQP-----FPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHL 285 (365)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCT----TCCC-----CCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCCC----CCCC-----cccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEE
Confidence 24443332 25888888732100 0000 111122212111111344567888887778888889999999
Q ss_pred EeCCCC
Q psy11529 237 RMSQQV 242 (244)
Q Consensus 237 wd~~~~ 242 (244)
||+++.
T Consensus 286 yDleTg 291 (365)
T 2xzh_A 286 YDLETG 291 (365)
T ss_dssp EETTTC
T ss_pred EEcccC
Confidence 999875
No 338
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.81 E-value=0.12 Score=40.02 Aligned_cols=200 Identities=11% Similarity=0.107 Sum_probs=120.5
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccC----CCceEEEEeCCCCCeEEEEe-------CCcc
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH----DLKVTGIDWAPNTNRIVTCS-------ADRN 78 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~d~~ 78 (244)
++|.--.|-.+ +.|+..+ +..|+-|++++.. .+...+..| ...|..-..+++.++++..+ -.|.
T Consensus 106 e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s---~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 180 (494)
T 1bpo_A 106 DDVTFWKWISL-NTVALVT-DNAVYHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (494)
T ss_dssp SCCCEEEEEET-TEEEEEC-SSEEEEEESSSSC---CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE
T ss_pred CCceEEEecCC-CeEEEEc-CCeeEEecccCCC---CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce
Confidence 34444555443 3444443 4689999997522 455555544 35677777889999876443 2478
Q ss_pred EEEEeeeCCCCCceeeEEEeccCcceEEEEECCC---CCeEEEeeC---CCeEEEEEeecC---CCce--EEEeeecC--
Q psy11529 79 AYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL---ENKFAAGSG---ARLISVCYFESE---NDWW--VAKHIKKP-- 145 (244)
Q Consensus 79 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~---d~~i~i~d~~~~---~~~~--~~~~~~~~-- 145 (244)
+.+|. .+.+. ...+.+|......+....+ ...+..+.. .+.++|.++... ...+ .......+
T Consensus 181 mQLYS--~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe 255 (494)
T 1bpo_A 181 MQLYS--VDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 255 (494)
T ss_dssp EEEEE--STTCC---EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred EEEee--ccccc---cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc
Confidence 89999 55554 3444566555544444322 123444443 278888888543 1100 11111111
Q ss_pred -CCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCE
Q psy11529 146 -IKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNK 224 (244)
Q Consensus 146 -~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 224 (244)
..+-..++..++.-..++.-+.-|.|++||+ .++.++..-+-. ..+|..-+-+....-
T Consensus 256 ~~~DFPvamqvs~kygviyviTK~G~i~lyDl------------------eTgt~i~~nrIs---~~~iF~t~~~~~~~G 314 (494)
T 1bpo_A 256 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDL------------------ETGTCIYMNRIS---GETIFVTAPHEATAG 314 (494)
T ss_dssp STTCCEEEEEEETTTTEEEEEETTSEEEEEET------------------TTCCEEEEEECC---SSCEEEEEEETTTTE
T ss_pred cccCceeEEEecccCCEEEEEecCceEEEEec------------------ccceeeeeeccc---CCceEEecccCCCCc
Confidence 1344567888888778888899999999999 778888776655 666666555555455
Q ss_pred EEEeeCCCcEEEEeCC
Q psy11529 225 LCWTSHDGSINVRMSQ 240 (244)
Q Consensus 225 l~~~~~dg~i~vwd~~ 240 (244)
++.....|.|.--.++
T Consensus 315 i~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 315 IIGVNRKGQVLSVCVE 330 (494)
T ss_dssp EEEEETTCEEEEEEEC
T ss_pred EEEEccCceEEEEEEc
Confidence 5555577776555443
No 339
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.64 E-value=0.16 Score=39.32 Aligned_cols=204 Identities=9% Similarity=0.109 Sum_probs=120.6
Q ss_pred EEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCcee
Q psy11529 14 THAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKP 93 (244)
Q Consensus 14 ~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 93 (244)
+.-.+|..+.||.-. ..+++|||++. . ..+.... ....|.--.|-. .+.|+..+ +..|+-|+ +... ..+
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~--K--~klks~~-~~e~VvfWkWis-~~~l~lVT-~taVyHWs--i~~~-s~P 138 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEM--K--SKMKAHT-MTDDVTFWKWIS-LNTVALVT-DNAVYHWS--MEGE-SQP 138 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTT--T--EEEEEEE-CSSCCCEEEEEE-TTEEEEEC-SSEEEEEE--SSSS-CCC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHH--h--hhhccee-cCCCceEEEecC-CCeEEEEc-CCeeEEec--ccCC-CCc
Confidence 345678777777765 68999999987 4 4555544 345666677754 33455554 56899999 4432 223
Q ss_pred eEEEecc----CcceEEEEECCCCCeEEEeeC-------CCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCC---C
Q psy11529 94 TLVLLRI----NRAATCVKWSPLENKFAAGSG-------ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN---N 159 (244)
Q Consensus 94 ~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~ 159 (244)
...+..| ...|..-..+++.++++..+- .|.+.+|..+... ....++|.+....+...-+ .
T Consensus 139 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-----sQ~ieGhaa~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHAASFAQFKMEGNAEES 213 (494)
T ss_dssp EEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-----EEEECCSEEEEEEEECTTCSSEE
T ss_pred hhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-----cchheeeeeeeEEEecCCCCCCc
Confidence 3333333 356777778899998775442 4678888777664 4666676544444433321 1
Q ss_pred CEEEEeeCC---CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEE
Q psy11529 160 HLLGCGSTD---FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236 (244)
Q Consensus 160 ~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 236 (244)
++++.+... ++++|.++...... ... -..+.+..+-.......-.-++..|+.-..++.-+.-|.|++
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~----~~~-----f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~l 284 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTG----NQP-----FPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHL 284 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTT----CCC-----CCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccC----CCC-----ccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEE
Confidence 244444432 68999888321000 000 011111111111111334568888988888888889999999
Q ss_pred EeCCCC
Q psy11529 237 RMSQQV 242 (244)
Q Consensus 237 wd~~~~ 242 (244)
||+++.
T Consensus 285 yDleTg 290 (494)
T 1bpo_A 285 YDLETG 290 (494)
T ss_dssp EETTTC
T ss_pred Eecccc
Confidence 999875
No 340
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.24 E-value=0.54 Score=42.14 Aligned_cols=203 Identities=8% Similarity=0.099 Sum_probs=111.6
Q ss_pred EEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCCCceee
Q psy11529 15 HAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPT 94 (244)
Q Consensus 15 ~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 94 (244)
.-.+|..+.+|.-. ..+++|||++. . ..+.... ....|.--.|-.+. .|+..+ +..|.-|+ +... ..+.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~--k--~klks~~-~~e~VvfWkWis~~-~l~lVT-~~aVyHW~--~~~~-s~P~ 139 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEM--K--SKMKAHT-MTDDVTFWKWISLN-TVALVT-DNAVYHWS--MEGE-SQPV 139 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHH--h--hhhcccc-cCCCceEEEecCCC-eeEEEc-CCeEEEec--cCCC-CccH
Confidence 34667777777654 68999999977 3 3343433 34567777776433 444443 56899999 4432 1222
Q ss_pred EEEecc----CcceEEEEECCCCCeEEEee-------CCCeEEEEEeecCCCceEEEeeecCCCCceeEEEec--C-CCC
Q psy11529 95 LVLLRI----NRAATCVKWSPLENKFAAGS-------GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWH--P-NNH 160 (244)
Q Consensus 95 ~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--p-~~~ 160 (244)
..+..| ...|..-..+++.++++..+ -.|.+.+|..+.... ....+|.+....+... + ..+
T Consensus 140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-----Q~iegha~~F~~~~~~~~~~~~~ 214 (1630)
T 1xi4_A 140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-----QPIEGHAASFAQFKMEGNAEEST 214 (1630)
T ss_pred HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-----hhhhHhHhhhheeccCCCCCCce
Confidence 111222 45677777788888876543 247788888776643 4445554433333322 1 122
Q ss_pred EEEEeeC---CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEE
Q psy11529 161 LLGCGST---DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVR 237 (244)
Q Consensus 161 ~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 237 (244)
+++.+.. .+.++|.++....... .. -..+.+..+-.+.....-..++..|+.-..+..-+.-|.|.++
T Consensus 215 l~~f~~~~~~g~kLhi~Ei~~~~~~~----~~-----f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~ 285 (1630)
T 1xi4_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGN----QP-----FPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY 285 (1630)
T ss_pred EEEEEEecCCCceEEEEecCCCccCC----CC-----CccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEE
Confidence 3333222 2688888873220000 00 0011111111100002334577888877778888889999999
Q ss_pred eCCCC
Q psy11529 238 MSQQV 242 (244)
Q Consensus 238 d~~~~ 242 (244)
|+++.
T Consensus 286 d~~t~ 290 (1630)
T 1xi4_A 286 DLETG 290 (1630)
T ss_pred ecccc
Confidence 99875
No 341
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.14 E-value=0.7 Score=41.45 Aligned_cols=159 Identities=9% Similarity=0.091 Sum_probs=88.8
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccC----CCceEEEEeCCCCCeEEEEe-------CCc
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGH----DLKVTGIDWAPNTNRIVTCS-------ADR 77 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~d~ 77 (244)
..+|.--.|-.+.. |+..+ +..|+-|++.+.. .+...+..| ...|..-..+++.++++..+ -.|
T Consensus 105 ~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s---~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G 179 (1630)
T 1xi4_A 105 TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 179 (1630)
T ss_pred CCCceEEEecCCCe-eEEEc-CCeEEEeccCCCC---ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccc
Confidence 34566666755443 44333 4679999996522 455555544 45677777788888876443 357
Q ss_pred cEEEEeeeCCCCCceeeEEEeccCcceEEEEEC--CC-CCeEEEeeC---CCeEEEEEeecC---CCceE--EEeeecC-
Q psy11529 78 NAYVWTQNNDDKKWKPTLVLLRINRAATCVKWS--PL-ENKFAAGSG---ARLISVCYFESE---NDWWV--AKHIKKP- 145 (244)
Q Consensus 78 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~~~~~---d~~i~i~d~~~~---~~~~~--~~~~~~~- 145 (244)
.+.+|. .+.+. ...+.+|......+... +. ...+..+.. .+.++|.++... .+.+. ......+
T Consensus 180 ~mQLyS--~er~~---sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~ 254 (1630)
T 1xi4_A 180 AMQLYS--VDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 254 (1630)
T ss_pred eeeeee--ccccc---chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCc
Confidence 889998 44443 22234444433333332 11 122222222 267888777543 11000 0111111
Q ss_pred --CCCceeEEEecCCCCEEEEeeCCCeEEEEEee
Q psy11529 146 --IKSTITCLDWHPNNHLLGCGSTDFKVRVFSAY 177 (244)
Q Consensus 146 --~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~ 177 (244)
...-..++..++.-..+..-+.-|.|++||+.
T Consensus 255 ~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 288 (1630)
T ss_pred ccccCcceEEEeccccCEEEEEecCceEEEEecc
Confidence 12344567778777788888899999999994
No 342
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.02 E-value=0.24 Score=39.57 Aligned_cols=77 Identities=9% Similarity=-0.079 Sum_probs=53.2
Q ss_pred CcceEEEEECCCCCeEEEeeC-CCeEEEEEeecCCCc--------eEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeE
Q psy11529 101 NRAATCVKWSPLENKFAAGSG-ARLISVCYFESENDW--------WVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKV 171 (244)
Q Consensus 101 ~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~--------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i 171 (244)
......+..+|||+++++++. +.++.++|++.-... ...........-.....+|.++|+-..+-.-|..|
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence 455677899999999888765 889999998752110 00011111223467789999999655666689999
Q ss_pred EEEEee
Q psy11529 172 RVFSAY 177 (244)
Q Consensus 172 ~i~d~~ 177 (244)
.-|++.
T Consensus 402 vkWni~ 407 (638)
T 3sbq_A 402 VKWNME 407 (638)
T ss_dssp EEEEHH
T ss_pred EEEecc
Confidence 999984
No 343
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.67 E-value=0.4 Score=37.55 Aligned_cols=109 Identities=10% Similarity=0.052 Sum_probs=59.8
Q ss_pred CceEEEEEcCCCC-eEEEecCCCeEEEeeeccCCCcceeeeeec---------cCCCceEEEEeCCC----CCeEEEEeC
Q psy11529 10 NPVTTHAWNNTRQ-QLAFTPNNQEVHLYQYEKAANDWSQLDVLD---------GHDLKVTGIDWAPN----TNRIVTCSA 75 (244)
Q Consensus 10 ~~v~~~~~~~~~~-~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~----~~~l~~~~~ 75 (244)
..-..|+|.|||+ .|+++...|.|++++..+.. ....+..+. ..+.....|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~-~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEI-FKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCB-CSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCe-eeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 4556899999996 45555678999999754310 001122211 12457889999996 443333222
Q ss_pred --C----------ccEEEEeeeCCCC--------CceeeEEEe--ccCcceEEEEECCCCCeEEEeeC
Q psy11529 76 --D----------RNAYVWTQNNDDK--------KWKPTLVLL--RINRAATCVKWSPLENKFAAGSG 121 (244)
Q Consensus 76 --d----------~~i~iwd~~~~~~--------~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~ 121 (244)
+ ..|.-|. +..+ .....+... ........|+|.|||.++++.+.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~--~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYT--VSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEE--BCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEE--EcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1344455 3321 111222222 22344678999999987666554
No 344
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.55 E-value=0.64 Score=36.41 Aligned_cols=110 Identities=11% Similarity=0.044 Sum_probs=59.5
Q ss_pred ceEEEEeCCCCC-eEEEEeCCccEEEEeeeCCCCC-ceeeEEEe---------ccCcceEEEEECCC----CCeEEEeeC
Q psy11529 57 KVTGIDWAPNTN-RIVTCSADRNAYVWTQNNDDKK-WKPTLVLL---------RINRAATCVKWSPL----ENKFAAGSG 121 (244)
Q Consensus 57 ~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~---------~~~~~v~~~~~~~~----~~~l~~~~~ 121 (244)
.-..|+|.|+|. .|+.+...|.|++++ ..... ......+. ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~--~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILT--PEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEEC--TTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEe--CCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 457899999986 566667889999997 43221 11112111 11356788999997 333332221
Q ss_pred --C----------CeEEEEEeecC--C-----CceEEEeee-cCCCCceeEEEecCCCCEEEEeeCC
Q psy11529 122 --A----------RLISVCYFESE--N-----DWWVAKHIK-KPIKSTITCLDWHPNNHLLGCGSTD 168 (244)
Q Consensus 122 --d----------~~i~i~d~~~~--~-----~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~d 168 (244)
+ ..|.-|.+... . ....+.... ......-..|.|.|||.+.++.++.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 13444555421 1 011111111 1223456789999999876665543
No 345
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.25 E-value=1.5 Score=38.76 Aligned_cols=104 Identities=10% Similarity=0.026 Sum_probs=65.3
Q ss_pred CeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCC------CCeEEEEeC-CccEEEEeeeCCCCCceee
Q psy11529 22 QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPN------TNRIVTCSA-DRNAYVWTQNNDDKKWKPT 94 (244)
Q Consensus 22 ~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-d~~i~iwd~~~~~~~~~~~ 94 (244)
.+++.++ ++.+.++.++. +++....... -...|.|+++.|. +.+++.|.. |++++|++ +.+-+....
T Consensus 524 ~~vvva~-g~~l~~fel~~--~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~s--L~~l~~~~~ 597 (1158)
T 3ei3_A 524 SQVVVAV-GRALYYLQIHP--QELRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILK--LPSFELLHK 597 (1158)
T ss_dssp SEEEEEE-TTEEEEEEEET--TEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEE--TTTCCEEEE
T ss_pred CEEEEEE-CCEEEEEEeeC--CceeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEE--CCCCCeEEE
Confidence 3555554 57788888865 3333333333 4668999999863 368888886 99999999 665543332
Q ss_pred EEEeccCcceEEEEEC--CCCCeEEEeeCCCeEEEEEeec
Q psy11529 95 LVLLRINRAATCVKWS--PLENKFAAGSGARLISVCYFES 132 (244)
Q Consensus 95 ~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~~ 132 (244)
..+ .......++.+. ....+|.+|-.||.+.-+.++.
T Consensus 598 ~~L-~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~ 636 (1158)
T 3ei3_A 598 EML-GGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNI 636 (1158)
T ss_dssp EEC-CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECT
T ss_pred EEC-CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcC
Confidence 222 112233333332 2345788899999988777764
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.92 E-value=1.2 Score=35.84 Aligned_cols=85 Identities=8% Similarity=-0.115 Sum_probs=53.8
Q ss_pred CceeEEEecCCCCEEEEeeC-CCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEE
Q psy11529 148 STITCLDWHPNNHLLGCGST-DFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLC 226 (244)
Q Consensus 148 ~~v~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 226 (244)
.....+..+|||++++.++. +.++.++|++.......... . ........+... .......+|.++|....
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~--~---~~~~~~~ae~e~----GlGPlHt~Fd~~G~aYT 393 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL--A---DPRDVIVGEPEL----GLGPLHTTFDGRGNAYT 393 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC--S---CGGGGEEECCBC----CSCEEEEEECSSSEEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc--c---CcccceEeeccC----CCcccEEEECCCCceEe
Confidence 34567899999998887664 77999999853211100000 0 011222333333 56678899999995555
Q ss_pred EeeCCCcEEEEeCCC
Q psy11529 227 WTSHDGSINVRMSQQ 241 (244)
Q Consensus 227 ~~~~dg~i~vwd~~~ 241 (244)
+---|..|.-|++..
T Consensus 394 tlfidSqvvkWni~~ 408 (638)
T 3sbq_A 394 TLFIDSQVVKWNMEE 408 (638)
T ss_dssp EETTTTEEEEEEHHH
T ss_pred eeeecceEEEEeccH
Confidence 555899999999864
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.18 Score=37.67 Aligned_cols=117 Identities=5% Similarity=-0.097 Sum_probs=62.7
Q ss_pred CeEEEEeCCccEEEEeeeCCCCCceeeEEEeccCcceEEEEE--CC-CCCeEEEe-eCCCeEEEEEeecCCCceEEEeee
Q psy11529 68 NRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKW--SP-LENKFAAG-SGARLISVCYFESENDWWVAKHIK 143 (244)
Q Consensus 68 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~ 143 (244)
..++.++.||.|.-.| ..+|+........ ...++....- .+ ++..++.. +.||.+..++.+++...+......
T Consensus 11 ~~V~v~t~dG~l~Ald--~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 11 DILIAADVEGGLHAVD--RRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEETTSCEEEEE--TTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CEEEEEeCCCeEEEEE--CCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 3677888899999999 7888755544321 1112211110 01 22333333 579999888876663321111100
Q ss_pred cCCCCceeE---EEe-c----CCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecC
Q psy11529 144 KPIKSTITC---LDW-H----PNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN 205 (244)
Q Consensus 144 ~~~~~~v~~---~~~-~----p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (244)
.-...++.. ... . ..+..+++|+.+|++.-.|+ .+++.+.++..
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~------------------~tG~~~W~~~~ 139 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINM------------------LNGEIISAFGP 139 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEET------------------TTCCEEEEEST
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEEC------------------CCCcEEEEEec
Confidence 001111111 000 0 03457889999999999998 66777766654
No 348
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.93 Score=33.86 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=22.2
Q ss_pred CCCeEEEEeCCccEEEEeeeCCCCCceeeE
Q psy11529 66 NTNRIVTCSADRNAYVWTQNNDDKKWKPTL 95 (244)
Q Consensus 66 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 95 (244)
.+..+++++.++++...| ..+|+.+..+
T Consensus 110 ~~g~Vy~Gs~~g~l~ald--~~tG~~~W~~ 137 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTIN--MLNGEIISAF 137 (339)
T ss_dssp CCEEEEECEEEEEEEEEE--TTTCCEEEEE
T ss_pred cCCEEEEEecCCEEEEEE--CCCCcEEEEE
Confidence 355788899999999999 8899865544
No 349
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=93.81 E-value=1.7 Score=33.09 Aligned_cols=216 Identities=10% Similarity=-0.002 Sum_probs=116.7
Q ss_pred eEEEEE-cCCCCeEEEecC--C---CeEEEeeeccCC----Ccceeeeeecc-----CCCceEEEEeCCCCCeEEE--Ee
Q psy11529 12 VTTHAW-NNTRQQLAFTPN--N---QEVHLYQYEKAA----NDWSQLDVLDG-----HDLKVTGIDWAPNTNRIVT--CS 74 (244)
Q Consensus 12 v~~~~~-~~~~~~l~~~~~--d---~~v~v~~~~~~~----~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~--~~ 74 (244)
...++. +.+++.|++--. + -++...+..... .....+..+.. +--.|..+...+++++-+. |-
T Consensus 28 P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~~~rLWVLDtG~ 107 (381)
T 3q6k_A 28 STAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCRRLWVVDIGS 107 (381)
T ss_dssp CCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECTTCEEEEEECSS
T ss_pred eeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcCCCcEEEEeCCC
Confidence 456777 678888877633 2 244444432100 00011133322 2235777788877664332 21
Q ss_pred -------------CCccEEEEeeeCCCC--CceeeEEEecc----CcceEEEEEC---CC----CCeEEEee-CCCeEEE
Q psy11529 75 -------------ADRNAYVWTQNNDDK--KWKPTLVLLRI----NRAATCVKWS---PL----ENKFAAGS-GARLISV 127 (244)
Q Consensus 75 -------------~d~~i~iwd~~~~~~--~~~~~~~~~~~----~~~v~~~~~~---~~----~~~l~~~~-~d~~i~i 127 (244)
.-.+|.+|| +.++ +......+... .+.+..+++. |. +.+++.+. ....|.|
T Consensus 108 ~~~~~~~~~~~~~~~pkLv~~D--L~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIV 185 (381)
T 3q6k_A 108 VEYRSRGAKDYPSHRPAIVAYD--LKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFI 185 (381)
T ss_dssp CSSCSTTGGGSCCCCCEEEEEE--SSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEE
T ss_pred cCcCCCccccCCCCCceEEEEE--CCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEE
Confidence 123678899 7887 76666665432 3457778877 32 23333333 3677999
Q ss_pred EEeecCCCceEEEeeecCC--------------CCceeEEEecCC----CCEEEEeeCCCeEEEEEeeecccccCCCCCC
Q psy11529 128 CYFESENDWWVAKHIKKPI--------------KSTITCLDWHPN----NHLLGCGSTDFKVRVFSAYIKDIESAPQSTN 189 (244)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~p~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 189 (244)
+|+.+++..........+. ...+..++++|+ ++.|+.....+. ++|.+.+..+.....
T Consensus 186 ydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~--- 261 (381)
T 3q6k_A 186 YDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGG--- 261 (381)
T ss_dssp EETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTC---
T ss_pred EECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcch---
Confidence 9998886533321111111 247888999998 677777665552 566665444332211
Q ss_pred CCccccccceeEEecCCCCCCCCeEEEEEe-cCCCEEEEeeCCCcEEEEeCCC
Q psy11529 190 WGSKSTLGNCLVELNNSSSGGGWIHSVAFS-KDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
...-+.+..- +. ...-..++.. .+|.++++--....|..|+.++
T Consensus 262 ----~~~v~~~G~k-g~---~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 262 ----KLNPELLGNR-GK---YNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp ----CCCCEEEEEC-CT---TCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred ----hhceEEeeec-CC---CCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 0111112111 11 1233456665 5677677767788899998764
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.41 E-value=2.8 Score=31.82 Aligned_cols=156 Identities=9% Similarity=0.108 Sum_probs=76.0
Q ss_pred CCceEEEEEcC--CCCeEEEecCCC--eEEEeeeccCCCcceeeee---ecc--------CCCceEEEEeCC-C-CCeEE
Q psy11529 9 INPVTTHAWNN--TRQQLAFTPNNQ--EVHLYQYEKAANDWSQLDV---LDG--------HDLKVTGIDWAP-N-TNRIV 71 (244)
Q Consensus 9 ~~~v~~~~~~~--~~~~l~~~~~d~--~v~v~~~~~~~~~~~~~~~---~~~--------~~~~v~~~~~~~-~-~~~l~ 71 (244)
...|.+|++.| ++.+++.+ ..+ .-.||...+.+..++.+.. +.. ....|.++++.| + ...+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 56799999998 45555444 333 1123333332234444322 111 113578899987 3 45566
Q ss_pred EEeCCccEEEEeeeCCCCCceeeEEEe----------------ccCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCC
Q psy11529 72 TCSADRNAYVWTQNNDDKKWKPTLVLL----------------RINRAATCVKWSPL-ENKFAAGSGARLISVCYFESEN 134 (244)
Q Consensus 72 ~~~~d~~i~iwd~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~ 134 (244)
.++..+.|...+ -....+....... .....+.+|.++|. ...++.+..++.+ |....+.
T Consensus 133 ~g~~~ggl~~S~--DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl--~~s~DgG 208 (394)
T 3b7f_A 133 AGTSPQGLFRST--DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGV--FESTDAG 208 (394)
T ss_dssp EEEETTEEEEES--STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEE--EEESSTT
T ss_pred EEecCCcEEEEc--CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCE--EEECCCC
Confidence 665556555444 2222322211000 01235788999884 4555655544443 3333333
Q ss_pred CceEEEeee-c----C-----CCCceeEEEecCC-CCEEEEeeCCC
Q psy11529 135 DWWVAKHIK-K----P-----IKSTITCLDWHPN-NHLLGCGSTDF 169 (244)
Q Consensus 135 ~~~~~~~~~-~----~-----~~~~v~~~~~~p~-~~~l~~~~~dg 169 (244)
..+...... . + ....+.++.++|+ ...|..+...+
T Consensus 209 ~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 209 TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 323222110 0 0 0134788999986 35666666544
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.25 E-value=2.9 Score=31.71 Aligned_cols=144 Identities=10% Similarity=0.104 Sum_probs=68.7
Q ss_pred eEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCc----cEEEEeeeCCCCCceeeEE-
Q psy11529 23 QLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADR----NAYVWTQNNDDKKWKPTLV- 96 (244)
Q Consensus 23 ~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~- 96 (244)
.|.+|+..| +.+++....+..+...... .....|.+|++.| +...+..++..+ .|...+ -....+.....
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~--D~G~tW~~~~~~ 99 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD--DGGGNWTEATRP 99 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES--STTSCCEECSBC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC--CCCCCceECCcc
Confidence 566677666 5555543211234443211 2346799999998 334444454444 344333 12222222111
Q ss_pred --Eec--------cCcceEEEEECCC--CCeEEEeeCCCeEEEEEeecCCCceEEEeee----------------cCCCC
Q psy11529 97 --LLR--------INRAATCVKWSPL--ENKFAAGSGARLISVCYFESENDWWVAKHIK----------------KPIKS 148 (244)
Q Consensus 97 --~~~--------~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------------~~~~~ 148 (244)
+.. ....|.++++.|. ...+.+++..+.| |....+...|...... .....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl--~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGL--FRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEE--EEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcE--EEEcCCCCCeEECcCccCCccccccccccccCCCCCC
Confidence 000 1125778899872 4556666555544 3344433323322111 01124
Q ss_pred ceeEEEecCC-CCEEEEeeCCCeEE
Q psy11529 149 TITCLDWHPN-NHLLGCGSTDFKVR 172 (244)
Q Consensus 149 ~v~~~~~~p~-~~~l~~~~~dg~i~ 172 (244)
.+.++.++|. ...|..+..++.|.
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~ 202 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVF 202 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEE
T ss_pred ceeEEEECCCCCCEEEEEECCCCEE
Confidence 5788999983 34455555445443
No 352
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=91.90 E-value=5.2 Score=33.79 Aligned_cols=113 Identities=16% Similarity=0.196 Sum_probs=58.6
Q ss_pred CCceEEEEeCCC-CCeEEEEeCCccEEEEeeeCCCCCceeeEEEec----cCcceEEEEECCC-CCeEEEeeCCCe----
Q psy11529 55 DLKVTGIDWAPN-TNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR----INRAATCVKWSPL-ENKFAAGSGARL---- 124 (244)
Q Consensus 55 ~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~~~~d~~---- 124 (244)
.+.|.+|+++|. ...++.++..+.|...+ -....+........ ....+.+++++|. ...++++..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 468999999994 45666777777766655 22223332211000 1246899999985 344544443211
Q ss_pred EEEEEeecCCCceEEEeeecC------CCCceeEEEecCCC-CEEEEeeCCC
Q psy11529 125 ISVCYFESENDWWVAKHIKKP------IKSTITCLDWHPNN-HLLGCGSTDF 169 (244)
Q Consensus 125 i~i~d~~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~-~~l~~~~~dg 169 (244)
-.||.-..+...|........ ....+..++++|.. +.++.+...+
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~ 143 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTE 143 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSS
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccC
Confidence 344444444443443322111 11135678888743 4555555344
No 353
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=90.03 E-value=7.6 Score=32.45 Aligned_cols=191 Identities=11% Similarity=0.085 Sum_probs=101.0
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCCC
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDK 89 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 89 (244)
..|.++....+|. |-.|+.+| +..||... ..+.. ........|.++.. .++. |..++.+ -+..+| ..++
T Consensus 63 ~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~--~~f~~--~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~--~~~~ 131 (758)
T 3ott_A 63 TRIYCGVIIDNTY-LYMGTDNG-ILVYNYRA--DRYEQ--PETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQ--LQSR 131 (758)
T ss_dssp SCEEEEEEETTTE-EEEEETTE-EEEEETTT--TEECC--CSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEE--TTTC
T ss_pred ceEEEEEEcCCCc-EEEEeCCC-eEEEeCCC--CEEEC--cccCCCceEEEEEe-cCCc-EEEEcCC-cceeEe--CCCC
Confidence 4688887777764 44555554 78888766 32221 11112335776654 3454 5555555 577888 6555
Q ss_pred CceeeEEEe--ccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecC-----CCCceeEEEecCCCCEE
Q psy11529 90 KWKPTLVLL--RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKP-----IKSTITCLDWHPNNHLL 162 (244)
Q Consensus 90 ~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~l 162 (244)
+........ .....|.++...+++.+.+ ++..| +..++...... .....+ ....|.++...+++..|
T Consensus 132 ~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~----~~~~~~~~~~~~~~~i~~i~~d~~~~~l 205 (758)
T 3ott_A 132 KLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKF----EGIPLPVHSSQSNLFVNSLLEDTTRQCV 205 (758)
T ss_dssp CEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEE----EEECCCCCTTCSSCCEEEEEEETTTTEE
T ss_pred eEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCce----EEecCCCccccccceeEEEEEECCCCEE
Confidence 432110000 1134578888887776544 55554 66666544321 111111 12347888888777655
Q ss_pred EEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCC
Q psy11529 163 GCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241 (244)
Q Consensus 163 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 241 (244)
-.|+. +-+..+|.. ..+........ ...|.++....+|.+.+. +.+ -+.+++.++
T Consensus 206 Wigt~-~Gl~~~~~~------------------~~~~~~~~~l~---~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~ 260 (758)
T 3ott_A 206 WIGTE-GYLFQYFPS------------------TGQIKQTEAFH---NNSIKSLALDGNGDLLAG-TDN-GLYVYHNDT 260 (758)
T ss_dssp EEEEE-EEEEEEETT------------------TTEEEEEEEEE---EEEEEEEEECTTCCEEEE-ETT-EEEEECCTT
T ss_pred EEEEC-CCCeEEcCC------------------CCeEEeccCCC---CCeEEEEEEcCCCCEEEE-eCC-ceeEEecCC
Confidence 55554 457778762 22211111111 345788888778876553 334 466776543
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.90 E-value=4.3 Score=29.35 Aligned_cols=141 Identities=12% Similarity=0.034 Sum_probs=73.1
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC-C
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD-K 89 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~ 89 (244)
.|..++.... ..++. . ||.|+.|-....+ ++.. -......|..++...+.. ++. . ||.+..|- ... +
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~G-qlg~---p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG--~n~~G 92 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNG-QLTM---PAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWG--GNEDG 92 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSS-TTSC---CGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEE--CCTTS
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCC-CCCC---CccCCCCEEEEEeCCCEE-EEE-E-CCEEEEee--CCCCC
Confidence 4666665433 23333 4 8999999765421 1111 111234677777664332 333 4 89999998 332 2
Q ss_pred CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC
Q psy11529 90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF 169 (244)
Q Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 169 (244)
+.- . .......|..++.... ..+.-. ++.+..|-.+...+.. ........|..++...+...+ . . ||
T Consensus 93 qlg-~--P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg----~~~~~~~~i~~i~~G~~~~~~-l-~-~G 159 (282)
T 3qhy_B 93 QTT-V--PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT----VPAEAQSGVTALDGGVYTALA-V-K-NG 159 (282)
T ss_dssp TTC-C--CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS----CCGGGGSSEEEEEECSSEEEE-E-E-TT
T ss_pred CCC-C--CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC----CCccCCCCeEEEEcccCEEEE-E-E-CC
Confidence 211 0 1112345666666543 333345 8999998776644311 111123456666654433222 2 3 68
Q ss_pred eEEEEEe
Q psy11529 170 KVRVFSA 176 (244)
Q Consensus 170 ~i~i~d~ 176 (244)
.++.|-.
T Consensus 160 ~v~~wG~ 166 (282)
T 3qhy_B 160 GVIAWGD 166 (282)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 8888875
No 355
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=86.36 E-value=8.1 Score=28.41 Aligned_cols=209 Identities=11% Similarity=-0.005 Sum_probs=109.0
Q ss_pred CCCCeEEEecCCCeEEEeeeccCCC-----cceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee-CCCC---
Q psy11529 19 NTRQQLAFTPNNQEVHLYQYEKAAN-----DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN-NDDK--- 89 (244)
Q Consensus 19 ~~~~~l~~~~~d~~v~v~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~--- 89 (244)
++...+++.+.+|.|+-..+..-.. .-.....++.. ..+..+........++..+..|.++-.... +...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 5666788888999999877643100 00111223333 334444444445567777788887666521 1111
Q ss_pred ---Cce-eeEEEeccCcceEEEE-ECC--CCCeEEEeeCCCeEEEEEeecCCCce--EEEeeecCCCCceeEEEecCCCC
Q psy11529 90 ---KWK-PTLVLLRINRAATCVK-WSP--LENKFAAGSGARLISVCYFESENDWW--VAKHIKKPIKSTITCLDWHPNNH 160 (244)
Q Consensus 90 ---~~~-~~~~~~~~~~~v~~~~-~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~ 160 (244)
... ..+.+. ....+..+. ... +..+++..+..|.++...+..-.... -.........+.+..+.......
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 163 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence 000 011111 123344333 321 35678888999999887764432100 01111112245566665555556
Q ss_pred EEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCC
Q psy11529 161 LLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ 240 (244)
Q Consensus 161 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 240 (244)
.++..+.+|.+..+.... +..... . ..+.....+.. ...|..+..-.++..|++.+..|..+..++.
T Consensus 164 ~i~l~T~~G~~~r~~~~e--v~~~gR-~------~~Gv~~i~L~~----~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRD--VRLTNR-G------TQGVCGMKLKE----GDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEEEEETTSEEEEEEGGG--SCBCCT-T------BCCEECCCCCT----TCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred EEEEEeCCCcEEEEEHHH--ccccCC-C------CCCeEeEEeCC----CCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 788889999988888632 110000 0 12222333332 4456666555556678888899999988876
Q ss_pred CC
Q psy11529 241 QV 242 (244)
Q Consensus 241 ~~ 242 (244)
.+
T Consensus 231 e~ 232 (312)
T 1suu_A 231 KI 232 (312)
T ss_dssp GS
T ss_pred Hh
Confidence 54
No 356
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=85.99 E-value=4.4 Score=32.87 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=36.6
Q ss_pred eeEEEecCCCCEEEEeeCC------------CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEE
Q psy11529 150 ITCLDWHPNNHLLGCGSTD------------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVA 217 (244)
Q Consensus 150 v~~~~~~p~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (244)
.-.|+|+|.|++++.-..+ ..+.+.+. ..++...-+..+. ...++.++
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~------------------~~g~~~rf~~~P~--gaE~TG~~ 537 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADP------------------ATGEIRRFMVGPI--GCEVTGIS 537 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECT------------------TTCCEEEEEECCT--TCEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeC------------------CCCeEEEEEeCCC--CccCcCee
Confidence 4568999999866553322 12333332 3344444444432 67899999
Q ss_pred EecCCCEEEEe
Q psy11529 218 FSKDGNKLCWT 228 (244)
Q Consensus 218 ~s~~~~~l~~~ 228 (244)
|+||++.|+..
T Consensus 538 fspDg~tlfvn 548 (592)
T 3zwu_A 538 FSPDQKTLFVG 548 (592)
T ss_dssp ECTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 99999987654
No 357
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=85.28 E-value=9.6 Score=28.28 Aligned_cols=208 Identities=10% Similarity=-0.021 Sum_probs=106.7
Q ss_pred CeEEEecCCCeEEEeeeccC-----CCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee-CCCCCc----
Q psy11529 22 QQLAFTPNNQEVHLYQYEKA-----ANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN-NDDKKW---- 91 (244)
Q Consensus 22 ~~l~~~~~d~~v~v~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~---- 91 (244)
..+++-+.+|.|+--.+... ++.-..-..++ ....+..+........|+.-+..|.++-.... +.....
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 35666778888886654220 00001111222 23344444444445556555667765543310 222210
Q ss_pred ee---eEEEeccCcceEEE-EECC--CCCeEEEeeCCCeEEEEEeecCCCce--EEEeeecCCCCceeEEEecCCCCEEE
Q psy11529 92 KP---TLVLLRINRAATCV-KWSP--LENKFAAGSGARLISVCYFESENDWW--VAKHIKKPIKSTITCLDWHPNNHLLG 163 (244)
Q Consensus 92 ~~---~~~~~~~~~~v~~~-~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~ 163 (244)
.+ .+.+. ....|..+ ...+ +..+++..+.+|.++--.+..-.... -...........+..+........|+
T Consensus 83 ~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEE
Confidence 11 01111 23344443 4442 57789999999999987765532200 01111111234555555555566788
Q ss_pred EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 164 CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 164 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
..+..|.+..+.....++...... ..+.....+.. ...|.++...+++.+|+..+..|.++.-.+..+
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~-------a~Gv~~i~L~~----~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~ 229 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRA-------TSGVQGMRFNI----DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEY 229 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTT-------SBCEESSCCCT----TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred EEECCCeEEEEECcccccCcCCcC-------CCCeeeecCCC----CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHc
Confidence 888999888887641122111000 12222222333 556777766666678889999999998877654
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.61 E-value=15 Score=31.89 Aligned_cols=32 Identities=25% Similarity=0.058 Sum_probs=27.8
Q ss_pred CCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 211 GWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 211 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
..+.+++..++..++++-+.|+++|+|++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~ 267 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTN 267 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTT
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCC
Confidence 45677888888899999999999999998864
No 359
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=84.41 E-value=18 Score=30.62 Aligned_cols=155 Identities=12% Similarity=0.100 Sum_probs=75.5
Q ss_pred CCceEEEEEcCC-CCeEEEecCCCeEEEeeeccCCCcceeeeeecc----CCCceEEEEeCCC-CCeEEEEeCCcc----
Q psy11529 9 INPVTTHAWNNT-RQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG----HDLKVTGIDWAPN-TNRIVTCSADRN---- 78 (244)
Q Consensus 9 ~~~v~~~~~~~~-~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~~~~d~~---- 78 (244)
.+.|.+|+++|. ...+.+++..+.|...+=.+ ..++.+..... ....|.+++++|. ...++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG--~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGT--SKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTT--TEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCC--CCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 478999999995 34555566556554333222 44555432111 1346999999984 344444432211
Q ss_pred EEEEeeeCCCCC-ceeeEEEec------cCcceEEEEECCC-CCeEEEeeCCCeEEEEEeecCCCceEEEeeec---CCC
Q psy11529 79 AYVWTQNNDDKK-WKPTLVLLR------INRAATCVKWSPL-ENKFAAGSGARLISVCYFESENDWWVAKHIKK---PIK 147 (244)
Q Consensus 79 i~iwd~~~~~~~-~~~~~~~~~------~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~ 147 (244)
-.||.- ...++ +........ ....+..++++|. ...++.+...+. ||.-..+...|....... ...
T Consensus 92 ~~v~~S-~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 92 AAFYVS-EDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp CEEEEE-SSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTT
T ss_pred cEEEEE-CCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCC
Confidence 344441 12222 221110000 0113456888875 345555553433 343444333343332211 112
Q ss_pred CceeEEEecCC-CCEEEEeeCC
Q psy11529 148 STITCLDWHPN-NHLLGCGSTD 168 (244)
Q Consensus 148 ~~v~~~~~~p~-~~~l~~~~~d 168 (244)
..+..+.++|. +..++.+..+
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESS
T ss_pred CCeEEEEECCCCCCEEEEEEcC
Confidence 45788999884 4455555544
No 360
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=83.42 E-value=11 Score=27.27 Aligned_cols=141 Identities=13% Similarity=-0.008 Sum_probs=73.1
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC-C
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD-K 89 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~ 89 (244)
.|..++...+ ..++. . ||.|+.|-....+ +...... -...|..++...+ +.+.-. +|.|..|- ... +
T Consensus 64 ~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~G-qlg~P~~---~~~~v~~ia~G~~--hs~al~-~G~v~~wG--~n~~g 131 (282)
T 3qhy_B 64 GVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDG-QTTVPAE---ARSGVDAIAAGAW--ASYALK-DGKVIAWG--DDSDG 131 (282)
T ss_dssp CCCEEEECSS-EEEEE-E-TTEEEEEECCTTS-TTCCCGG---GSSSEEEEEEETT--EEEEEE-TTEEEEEE--CCTTS
T ss_pred CEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCC-CCCCCcc---cCCCeEEEECcCC--EEEEEe-CCeEEEec--CCCCC
Confidence 4555554433 23333 4 7888888764321 1111111 1346777776643 334445 89999998 332 2
Q ss_pred CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEeeCCC
Q psy11529 90 KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF 169 (244)
Q Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 169 (244)
+. .. .......+..++.... ..+.-. |+.+..|-.....+.. ........|..++-..+. .++. .||
T Consensus 132 ql-g~--~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg----~p~~~~~~v~~i~~G~~h-s~al--~~G 198 (282)
T 3qhy_B 132 QT-TV--PAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTT----VPAEAQSGVDDVAGGIFH-SLAL--KDG 198 (282)
T ss_dssp TT-SC--CGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTS----CCGGGGSSEEEEEECSSE-EEEE--ETT
T ss_pred cC-CC--CccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCC----CceecCCCeEEEEecCCE-EEEE--ECC
Confidence 21 11 1122345666666443 222233 7888888776544311 111123467777665443 3333 589
Q ss_pred eEEEEEe
Q psy11529 170 KVRVFSA 176 (244)
Q Consensus 170 ~i~i~d~ 176 (244)
.++.|-.
T Consensus 199 ~v~~wG~ 205 (282)
T 3qhy_B 199 KVIAWGD 205 (282)
T ss_dssp EEEEEEC
T ss_pred eEEEEEC
Confidence 9999975
No 361
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=83.38 E-value=5.9 Score=32.16 Aligned_cols=61 Identities=11% Similarity=0.204 Sum_probs=36.5
Q ss_pred eEEEEECCCCCeEEEeeCC----------CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 104 ATCVKWSPLENKFAAGSGA----------RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 104 v~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
.-.|.|+|.|++++.-..+ +.-.+|-...... ........+....++.++|+||++.|.+.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g-~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC-CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC-eEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3568999999865554322 1123333332221 12333344566899999999999877664
No 362
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.74 E-value=23 Score=30.71 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=26.6
Q ss_pred ceeEEEecCCCCEEEEeeCCCeEEEEEeeecc
Q psy11529 149 TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKD 180 (244)
Q Consensus 149 ~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~ 180 (244)
.+.+++..++..++++-+.|+++|+|++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCC
Confidence 46677777888899999999999999986544
No 363
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=82.55 E-value=9.9 Score=30.73 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=36.7
Q ss_pred CceeEEEecCCCCEEEEeeCC------------CeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEE
Q psy11529 148 STITCLDWHPNNHLLGCGSTD------------FKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHS 215 (244)
Q Consensus 148 ~~v~~~~~~p~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (244)
.....+.|+++|.+.+..... ..+..++. .+++...-+.... ...++.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp------------------~tGel~~fl~~P~--~aEpnG 535 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADP------------------ATGEIRRFMVGPI--GCEVTG 535 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECT------------------TTCCEEEEEECCT--TCEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeC------------------CCCeEEEEEeCCC--CccccC
Confidence 345679999999866632211 13444433 3344444343321 456899
Q ss_pred EEEecCCCEEEEe
Q psy11529 216 VAFSKDGNKLCWT 228 (244)
Q Consensus 216 ~~~s~~~~~l~~~ 228 (244)
++|+||++.|+..
T Consensus 536 iafSPD~ktLfV~ 548 (592)
T 4a9v_A 536 ISFSPDQKTLFVG 548 (592)
T ss_dssp EEECTTSSEEEEE
T ss_pred CEECCCCCEEEEE
Confidence 9999999987765
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.36 E-value=21 Score=31.68 Aligned_cols=31 Identities=26% Similarity=0.055 Sum_probs=26.1
Q ss_pred CeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 212 WIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 212 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
.+.+++..++..++++-+.|+++|+|++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~ 269 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN 269 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTT
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCC
Confidence 4556677788899999999999999999864
No 365
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.34 E-value=8.3 Score=34.15 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.4
Q ss_pred ceeEEEecCCCCEEEEeeCCCeEEEEEeeecc
Q psy11529 149 TITCLDWHPNNHLLGCGSTDFKVRVFSAYIKD 180 (244)
Q Consensus 149 ~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~ 180 (244)
.+.+++..++..++++-+.|+++|+|++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~ 270 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 270 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCC
Confidence 34556666788899999999999999996553
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=80.39 E-value=14 Score=26.61 Aligned_cols=210 Identities=12% Similarity=-0.024 Sum_probs=111.2
Q ss_pred CCceEEEEEcCCCCeEEEecCCCeEEE---eeeccCCCcceeeeeeccCCCceEEEEeCC-CCCeEEEEeCCccEEEEee
Q psy11529 9 INPVTTHAWNNTRQQLAFTPNNQEVHL---YQYEKAANDWSQLDVLDGHDLKVTGIDWAP-NTNRIVTCSADRNAYVWTQ 84 (244)
Q Consensus 9 ~~~v~~~~~~~~~~~l~~~~~d~~v~v---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~ 84 (244)
.+.+..+.-......|+.-+..|.++- +++.. .....+ +. ....|..+.... +..+++..+.+|.++-..+
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~--~~~~~l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l 97 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQ--GSKVSL--KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPL 97 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHT--SEECCC--SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEG
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCcc--Cccccc--CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEH
Confidence 345555544444445555556777664 34432 111112 43 355666664421 4678899999999998873
Q ss_pred eCCCCC----ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC-----ceEEEeeecCCCCceeEEEe
Q psy11529 85 NNDDKK----WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND-----WWVAKHIKKPIKSTITCLDW 155 (244)
Q Consensus 85 ~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~v~~~~~ 155 (244)
..-. -...+.+. ....+..+........++..+..|.+..+....-.. ..... ........+..+..
T Consensus 98 --~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~-i~L~~~d~vv~~~~ 173 (276)
T 3no0_A 98 --AEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQG-IKLEKNDETSGLRI 173 (276)
T ss_dssp --GGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC-CCCCTTCCEEEEEE
T ss_pred --HHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEE-EccCCCCEEEEEEE
Confidence 2211 01111222 234555555555566788888899888776533211 00111 11122355666655
Q ss_pred cCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEE
Q psy11529 156 HPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSIN 235 (244)
Q Consensus 156 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 235 (244)
.+++..++..+..|.++...+....... +.++-+..+.. ...+-.+....+...++..+.+|.+.
T Consensus 174 ~~~~~~ll~~T~~G~~kr~~~~e~~~~~-----------R~gkGv~~i~~----~~~lv~~~~~~~~~~i~~~t~~G~~i 238 (276)
T 3no0_A 174 WNGEPYLLVITAKGRVKKISHEEIPKTN-----------RGVKGTEVSGT----KDTLVDLIPIKEEVELLITTKNGKAF 238 (276)
T ss_dssp ESSCSEEEEEETTSCEEEEEGGGSCCCC-----------TTCCCEECCCS----SSCEEEEEEESSEEEEEEEETTSCEE
T ss_pred eCCCCEEEEEeCCCcEEEeEHHHcccCC-----------CCCcceEEEcC----CCcEEEEEEeCCCCEEEEEcCCCeEE
Confidence 5666788888999998888763211110 11222222221 33444444333344566677788877
Q ss_pred E--EeCCCC
Q psy11529 236 V--RMSQQV 242 (244)
Q Consensus 236 v--wd~~~~ 242 (244)
. ++++..
T Consensus 239 r~~~~~~~i 247 (276)
T 3no0_A 239 YDKINQKDI 247 (276)
T ss_dssp EEEEEGGGS
T ss_pred EeeeCHHHC
Confidence 7 776654
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=80.08 E-value=16 Score=27.10 Aligned_cols=174 Identities=10% Similarity=0.019 Sum_probs=90.0
Q ss_pred CCceEEE-EeCC--CCCeEEEEeCCccEEEEeee-CCCCC--ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEE
Q psy11529 55 DLKVTGI-DWAP--NTNRIVTCSADRNAYVWTQN-NDDKK--WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVC 128 (244)
Q Consensus 55 ~~~v~~~-~~~~--~~~~l~~~~~d~~i~iwd~~-~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 128 (244)
...|.++ .... +..+++.++.+|.++--.+. ..... -...+.+.. ...+..+........++..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 3455554 4442 57789999999999987731 11111 111122222 3445444444455678888888988877
Q ss_pred Eee--cCCC-----ceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeE
Q psy11529 129 YFE--SEND-----WWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV 201 (244)
Q Consensus 129 d~~--~~~~-----~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (244)
... .-.. ... ..........|.++...+++..++..+..|.++.-.+...... ... ..+....
T Consensus 173 ~~~~~eip~~gr~a~Gv-~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~--~R~-------~~G~~~~ 242 (327)
T 3uc1_A 173 SATDEALRPMGRATSGV-QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQ--GRG-------GKGVLTV 242 (327)
T ss_dssp ECCTTTSCCCCTTSBCE-ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBC--CTT-------SCCEESS
T ss_pred ECcccccCcCCcCCCCe-eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHcccc--CcC-------CCcEEEE
Confidence 766 2110 001 1111122355666666666678888999998888776311111 000 0111111
Q ss_pred EecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 202 ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 202 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
.+... ...+-.+....+...++..+.+|.+.-+++...
T Consensus 243 ~l~~~---~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 243 MYDRR---RGRLVGALIVDDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp CCCTT---TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGS
T ss_pred EecCC---CCeEEEEEEeCCCccEEEEcCCCeEEEEehhhc
Confidence 22211 223444443334445666677777777766544
No 368
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=79.89 E-value=25 Score=29.32 Aligned_cols=199 Identities=7% Similarity=-0.051 Sum_probs=105.2
Q ss_pred CceEEEEEcCCCCeEEEecCCCeEEEeeeccCCCcceeeeeec-------cCCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLD-------GHDLKVTGIDWAPNTNRIVTCSADRNAYVW 82 (244)
Q Consensus 10 ~~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 82 (244)
..|.++.-..+|.+.+. +.+| +..++... +.......+. -....|.++.-.++|+..+ |+ ++-+..+
T Consensus 324 ~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~ 397 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFG-GANG-LIRFTDPA--GERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRY 397 (758)
T ss_dssp CBEEEEEECTTCCEEEE-ETTE-EEEESCTT--SSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEE
T ss_pred ceEEEEEEcCCCCEEEe-eCCc-ceeecccc--cccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhc
Confidence 46788887777776544 4444 55555433 1111111111 0124588888888777554 44 3468888
Q ss_pred eeeCCCCCceeeEEEec----cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecC-----CCceEE-Ee--eecC-CCCc
Q psy11529 83 TQNNDDKKWKPTLVLLR----INRAATCVKWSPLENKFAAGSGARLISVCYFESE-----NDWWVA-KH--IKKP-IKST 149 (244)
Q Consensus 83 d~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~-~~--~~~~-~~~~ 149 (244)
| ..+++......... ....|.++...++++ |..|+..+-+.++|.+.. .. ... .. .... ....
T Consensus 398 ~--~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 473 (758)
T 3ott_A 398 D--YATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQ-YIAEQNYSVHNGLSGMF 473 (758)
T ss_dssp E--TTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSE-EECSEEECGGGTCSCSC
T ss_pred C--cCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcc-eecccccccccccccce
Confidence 8 66665432221111 124578888777765 555666555777775531 11 000 00 0111 1235
Q ss_pred eeEEEecCCCCEEE-EeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCC-CCCCCCeEEEEEecCCCEEEE
Q psy11529 150 ITCLDWHPNNHLLG-CGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS-SSGGGWIHSVAFSKDGNKLCW 227 (244)
Q Consensus 150 v~~~~~~p~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~ 227 (244)
|.++...++|++.+ .++.. -|..+|... .+ +..+... ......+.++....+|.+.+.
T Consensus 474 i~~i~~d~~g~lWi~~~t~~-Gl~~~d~~~------------------~~-~~~~~~~~~~~~~~~~~i~~d~~g~lWig 533 (758)
T 3ott_A 474 INQIIPDNEGNVWVLLYNNK-GIDKINPRT------------------RE-VTKLFADELTGEKSPNYLLCDEDGLLWVG 533 (758)
T ss_dssp EEEEEECTTSCEEEEETTCS-SEEEEETTT------------------TE-EEEECTTTSCGGGCEEEEEECTTSCEEEE
T ss_pred eeeEEEcCCCCEEEEccCCC-CcEEEeCCC------------------Cc-eEEecCCCcCCCcccceEEECCCCCEEEE
Confidence 88899888888665 34444 477788632 22 2222110 000235677777777876554
Q ss_pred eeCCCcEEEEeCC
Q psy11529 228 TSHDGSINVRMSQ 240 (244)
Q Consensus 228 ~~~dg~i~vwd~~ 240 (244)
+..| +..+|.+
T Consensus 534 -t~~G-l~~~~~~ 544 (758)
T 3ott_A 534 -FHGG-VMRINPK 544 (758)
T ss_dssp -ETTE-EEEECC-
T ss_pred -ecCc-eEEEecC
Confidence 3444 6667654
No 369
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=79.67 E-value=15 Score=26.48 Aligned_cols=171 Identities=10% Similarity=-0.005 Sum_probs=92.5
Q ss_pred CceEEEEeCCCCCeEEEEeCCccEEEEeee-CCCCCceeeEEEeccCcceEEEEECC-CCCeEEEeeCCCeEEEEEeecC
Q psy11529 56 LKVTGIDWAPNTNRIVTCSADRNAYVWTQN-NDDKKWKPTLVLLRINRAATCVKWSP-LENKFAAGSGARLISVCYFESE 133 (244)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~ 133 (244)
..+..+.-.....+|+..+..|.++--.+. +....... + ......+..+.... ++.+++..+.+|.++-..+..-
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l--l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L--KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C--SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c--CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 344444444444556666667776643210 22221111 2 22344555554321 4678999999999998876553
Q ss_pred CC-ceEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCC
Q psy11529 134 ND-WWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGW 212 (244)
Q Consensus 134 ~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (244)
.. ..-...........+..+........++..+..|.+..++... +..... . ..+.....+.. ...
T Consensus 101 ~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~e--ip~~gR-~------a~Gv~~i~L~~----~d~ 167 (276)
T 3no0_A 101 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVRE--VPPSTP-G------ARGVQGIKLEK----NDE 167 (276)
T ss_dssp TTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGG--SCBCCT-T------CCCEECCCCCT----TCC
T ss_pred hhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhh--CCCcCC-C------CCCEEEEccCC----CCE
Confidence 20 0001111112234566665555566788889999888887631 111000 0 11222222333 455
Q ss_pred eEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 213 IHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 213 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
|..+...+++..++..+..|.++...+..+
T Consensus 168 vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 168 TSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp EEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred EEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 666665566778888899999998887665
No 370
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=78.22 E-value=29 Score=29.04 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=54.3
Q ss_pred ceEEEEEcCCC-CeEEEecCCCeEEEeeeccCCCcceeeeeecc----CCCceEEEEeCC-CCCeEEEEeCC-------c
Q psy11529 11 PVTTHAWNNTR-QQLAFTPNNQEVHLYQYEKAANDWSQLDVLDG----HDLKVTGIDWAP-NTNRIVTCSAD-------R 77 (244)
Q Consensus 11 ~v~~~~~~~~~-~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~~d-------~ 77 (244)
.|..++++|.. ..+.++...+.|...+-.+ ..++.+..... ....|.+++++| +...++.+... +
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G--~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPST--ETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTT--TEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCC--CCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 89999999963 4455555455544443333 44554322111 124689999998 44444444321 1
Q ss_pred cEEEEeeeCCCC--CceeeEEEecc-------CcceEEEEECCC-CCeEEEeeC
Q psy11529 78 NAYVWTQNNDDK--KWKPTLVLLRI-------NRAATCVKWSPL-ENKFAAGSG 121 (244)
Q Consensus 78 ~i~iwd~~~~~~--~~~~~~~~~~~-------~~~v~~~~~~~~-~~~l~~~~~ 121 (244)
...||. ..++ .+.... .... ...+..++++|. ...++.+..
T Consensus 102 ~~~l~~--S~DgG~TW~~~~-~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 102 MGAILR--STDRGETWEKTI-LPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CCEEEE--ESSSSSSCEEEE-CSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred CccEEE--eCCCCCCcccCC-CCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 245665 3332 222221 1100 112467899886 456666653
No 371
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=78.03 E-value=17 Score=29.45 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=36.4
Q ss_pred ceEEEEECCCCCeEEEeeCC------------CeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEee
Q psy11529 103 AATCVKWSPLENKFAAGSGA------------RLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGS 166 (244)
Q Consensus 103 ~v~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 166 (244)
....|.|.++|.+.+..... ..+..++..+++. ......+....++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel---~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI---RRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCE---EEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeE---EEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45679999998876633221 1333333333332 2222233456899999999999877653
No 372
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=75.59 E-value=22 Score=26.30 Aligned_cols=209 Identities=8% Similarity=-0.007 Sum_probs=107.3
Q ss_pred CCCCeEEEecCCCeEEEeeeccCCCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee-CCC------CCc
Q psy11529 19 NTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN-NDD------KKW 91 (244)
Q Consensus 19 ~~~~~l~~~~~d~~v~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~------~~~ 91 (244)
|+...+++.+.+|.|+--.+......-.....++.. ..+..+........++..+..|.++-.... +.. |..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 566678888899999877654200000111233433 334444444445566666777876554420 211 110
Q ss_pred e-eeEEEeccCcceEEE-EECC--CCCeEEEeeCCCeEEEEEeecCCCce---EEEeeecCCCCceeEEEecCCCCEEEE
Q psy11529 92 K-PTLVLLRINRAATCV-KWSP--LENKFAAGSGARLISVCYFESENDWW---VAKHIKKPIKSTITCLDWHPNNHLLGC 164 (244)
Q Consensus 92 ~-~~~~~~~~~~~v~~~-~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~~ 164 (244)
. ..+.+ .....|..+ ...+ ++.+++.++..|.++--.+..-.... -.........+.+..+........++.
T Consensus 82 i~~~i~L-~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPI-DRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCC-CTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred hhhccCC-CCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence 0 01111 122344443 3433 25678899999999988765322100 011111112255555555555567778
Q ss_pred eeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCC-EEEEeeCCCcEEEEeCCCC
Q psy11529 165 GSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGN-KLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 165 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~ 242 (244)
.+.+|.+..++... +..... . ..+-....+.. ...|.++..-+++. .|++.+..|..+..++..+
T Consensus 161 ~T~~G~~irf~~~e--v~~~gR-~------a~GV~~i~L~~----~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~ 226 (323)
T 1wp5_A 161 VTHNGYALWFDESE--VSIVGV-R------AAGVKGMNLKE----GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEF 226 (323)
T ss_dssp EETTSEEEEEEGGG--SCBCCS-S------CCCEECCCCCT----TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred EeCCCcEEEEEHHH--CcccCC-C------CcCEEEEEeCC----CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHc
Confidence 88999888887632 111000 0 11222222322 44566665444445 7888888998888777653
No 373
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=75.34 E-value=24 Score=26.68 Aligned_cols=157 Identities=3% Similarity=-0.134 Sum_probs=84.6
Q ss_pred EcCCCCeEEEecCCCeEEEeeeccC-----CCcceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee-CCC--
Q psy11529 17 WNNTRQQLAFTPNNQEVHLYQYEKA-----ANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN-NDD-- 88 (244)
Q Consensus 17 ~~~~~~~l~~~~~d~~v~v~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~-- 88 (244)
+-|+...+++.+.+|.|+--.+... ++.-.....++. ...+..+........++..+..|.++-+... +..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 3467788899999999997654320 000012233442 4455555555555666666777776655421 211
Q ss_pred ----CCce-eeEEEeccCcceEEE-EECC--CCCeEEEeeCCCeEEEEEeecCCC---ceEEEeeecCCCCceeEEEecC
Q psy11529 89 ----KKWK-PTLVLLRINRAATCV-KWSP--LENKFAAGSGARLISVCYFESEND---WWVAKHIKKPIKSTITCLDWHP 157 (244)
Q Consensus 89 ----~~~~-~~~~~~~~~~~v~~~-~~~~--~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~~p 157 (244)
|... ..+.+. ....|.++ .... ++.+|+.++..|.++.-.+..-.. ......... ....+..+....
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~-~~d~lv~v~~~~ 159 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLD-EGDALVGVALTD 159 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCC-TTCCEEEEEEEC
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeC-CCCEEEEEEEeC
Confidence 1100 011112 23344444 3332 356899999999999877644321 001111111 234555555555
Q ss_pred CCCEEEEeeCCCeEEEEEe
Q psy11529 158 NNHLLGCGSTDFKVRVFSA 176 (244)
Q Consensus 158 ~~~~l~~~~~dg~i~i~d~ 176 (244)
....++..+.+|.+..++.
T Consensus 160 ~~~~i~l~T~~G~~irf~~ 178 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGE 178 (370)
T ss_dssp SCCEEEEEETTSEEEEEEG
T ss_pred CCceEEEEeCCCeEEEEEc
Confidence 5567777888998888875
No 374
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=69.18 E-value=31 Score=25.25 Aligned_cols=208 Identities=11% Similarity=0.029 Sum_probs=103.1
Q ss_pred CCCCeEEEecCCCeEEEeeeccCCC-----cceeeeeeccCCCceEEEEeCCCCCeEEEEeCCccEEEEeee-CCCCCc-
Q psy11529 19 NTRQQLAFTPNNQEVHLYQYEKAAN-----DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQN-NDDKKW- 91 (244)
Q Consensus 19 ~~~~~l~~~~~d~~v~v~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~- 91 (244)
|+...+++.+.+|.|+--.+..-.. .-.....++.. ..+..+........++..+..|.++-+... +.....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 3455677888899988766533100 00111123322 333333333345566666677776554420 222111
Q ss_pred ---ee---eEEEeccCcceEEEEE-C--CCCCeEEEeeCCCeEEEEEeecCCCc---eEEEeeecCCCCceeEEEecCCC
Q psy11529 92 ---KP---TLVLLRINRAATCVKW-S--PLENKFAAGSGARLISVCYFESENDW---WVAKHIKKPIKSTITCLDWHPNN 159 (244)
Q Consensus 92 ---~~---~~~~~~~~~~v~~~~~-~--~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~~p~~ 159 (244)
.+ .+.+ .....|..+.. . +++.+++..+..|.++--.+..-... ......... .+.+..+......
T Consensus 80 a~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~-~d~lv~~~~~~~~ 157 (307)
T 1zi0_A 80 ARGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVD-GDELIGVDLTSGE 157 (307)
T ss_dssp SCCEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCT-TCCEEEEEEECTT
T ss_pred CCCeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECC-CCEEEEEEEeCCC
Confidence 00 1111 22334544433 2 34567888999999998776532210 011111122 2455555555555
Q ss_pred CEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeC
Q psy11529 160 HLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMS 239 (244)
Q Consensus 160 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 239 (244)
..++..+.+|.+..++.. ++..... . ..+.....+.. ...|.++....++..|++.+..|.++-.++
T Consensus 158 ~~i~l~T~~G~~irf~~~--~v~~~gr-~------a~Gv~~i~L~~----~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~ 224 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKES--SVRAMGC-N------TTGVRGIRLGE----GDKVVSLIVPRGDGAILTATQNGYGKRTAV 224 (307)
T ss_dssp CEEEEEETTSEEEEEEGG--GSCBCCT-T------CCCEECCCCCT----TCCEEEEECCCSSCEEEEEETTSEEEEECG
T ss_pred CEEEEECCCCcEEEEEHH--HcCccCC-C------CCCeEeEEeCC----CCEEEEEEEecCCCEEEEEEcCCceEEEEH
Confidence 577778889988877763 1211100 0 11222222332 455666655455667888889999988877
Q ss_pred CCC
Q psy11529 240 QQV 242 (244)
Q Consensus 240 ~~~ 242 (244)
..+
T Consensus 225 ~e~ 227 (307)
T 1zi0_A 225 AEY 227 (307)
T ss_dssp GGS
T ss_pred HHh
Confidence 654
No 375
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=67.84 E-value=53 Score=27.47 Aligned_cols=110 Identities=18% Similarity=0.260 Sum_probs=57.2
Q ss_pred CceEEEEeCCC-CCeEEEEeCCccEEEEeeeCCCCCceeeEEEec----cCcceEEEEECCC-CCeEEEeeCC-------
Q psy11529 56 LKVTGIDWAPN-TNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLR----INRAATCVKWSPL-ENKFAAGSGA------- 122 (244)
Q Consensus 56 ~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~~~~d------- 122 (244)
+.|..|+++|. ...++.+...+.|...+ -....+........ ....+.+++++|. .+.++++...
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~--D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD--PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE--TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC--CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccccccc
Confidence 37899999995 35566666666666555 33333332211011 1245889999984 3444444321
Q ss_pred CeEEEEEeecCCCceEEEeeecC------CCCceeEEEecCCC-CEEEEeeC
Q psy11529 123 RLISVCYFESENDWWVAKHIKKP------IKSTITCLDWHPNN-HLLGCGST 167 (244)
Q Consensus 123 ~~i~i~d~~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~-~~l~~~~~ 167 (244)
+...||.-..+...|........ ....+..++++|.. +.++.+..
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred CCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 12445555444443433322111 01124678999853 56666653
No 376
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=65.36 E-value=52 Score=26.44 Aligned_cols=71 Identities=14% Similarity=-0.068 Sum_probs=42.3
Q ss_pred ceEEEEECCCC--CeEEEeeCCCeEEEEEeecCCCc-eEEEe-eecCCCCcee-EEEecCCCCEEEEeeCCCeEEE
Q psy11529 103 AATCVKWSPLE--NKFAAGSGARLISVCYFESENDW-WVAKH-IKKPIKSTIT-CLDWHPNNHLLGCGSTDFKVRV 173 (244)
Q Consensus 103 ~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~-~~~~~-~~~~~~~~v~-~~~~~p~~~~l~~~~~dg~i~i 173 (244)
..++++....+ ..++.|+.+|.|.-..+...... ..... .......+|. .+.+++++.+|++++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 35555554433 34777889998766556543221 01111 1122245775 8999999999999887764444
No 377
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=59.71 E-value=67 Score=25.82 Aligned_cols=73 Identities=8% Similarity=0.013 Sum_probs=43.0
Q ss_pred CCceEEEEEcCCCC--eEEEecCCCeEEEeeeccCCCcceeeee--eccCCCceE-EEEeCCCCCeEEEEeCCccEEE
Q psy11529 9 INPVTTHAWNNTRQ--QLAFTPNNQEVHLYQYEKAANDWSQLDV--LDGHDLKVT-GIDWAPNTNRIVTCSADRNAYV 81 (244)
Q Consensus 9 ~~~v~~~~~~~~~~--~l~~~~~d~~v~v~~~~~~~~~~~~~~~--~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i 81 (244)
....++++....+. .+..|+.+|.|.=..+............ +.....+|. .+.++++..+|+.++.++-++|
T Consensus 399 ~~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 399 RDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SSCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ccceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 44577777665443 4667888887765555431110011112 222346775 8999998889988876654443
No 378
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=59.41 E-value=74 Score=26.38 Aligned_cols=58 Identities=9% Similarity=0.005 Sum_probs=35.8
Q ss_pred eEEEeeCCCeEEEE-EeecCCCceEEEeeecCCCCceeEEEecCCC--CEEEEeeCCCeEEE
Q psy11529 115 KFAAGSGARLISVC-YFESENDWWVAKHIKKPIKSTITCLDWHPNN--HLLGCGSTDFKVRV 173 (244)
Q Consensus 115 ~l~~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~~~dg~i~i 173 (244)
.++.|+.+|.|.-. ....... ............+|..+.++++. .+|++++.++.++|
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~-~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVH-IIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEE-EEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCce-EEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 57778889887533 3332211 11111122334688899999987 88988888775554
No 379
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=53.74 E-value=89 Score=25.48 Aligned_cols=59 Identities=12% Similarity=-0.040 Sum_probs=35.6
Q ss_pred eEEEeeCCCeEEEEEeecCC-C--ceEEEee-ecCCCCceeEEEecCCCCEEEEeeCCCeEEE
Q psy11529 115 KFAAGSGARLISVCYFESEN-D--WWVAKHI-KKPIKSTITCLDWHPNNHLLGCGSTDFKVRV 173 (244)
Q Consensus 115 ~l~~~~~d~~i~i~d~~~~~-~--~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i 173 (244)
.+..|+.+|.|.-.-..... . ....... .......|..+.++++...|++++.++.++|
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 46678888887643332222 0 1111111 1123467899999999889998887765554
No 380
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=51.95 E-value=75 Score=25.21 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=34.7
Q ss_pred eEEEeeCCCeEEEEEeecCCC-----ceEE-EeeecCCCCceeEEEecCCCCEEEEeeCCCeEEE
Q psy11529 115 KFAAGSGARLISVCYFESEND-----WWVA-KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRV 173 (244)
Q Consensus 115 ~l~~~~~d~~i~i~d~~~~~~-----~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i 173 (244)
.+..|+.+|.|.=.-+..... .... .........+|..+.++++..+|++++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 367788888765433322110 0000 1111123468899999999999999988875554
No 381
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=50.58 E-value=33 Score=28.70 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=0.0
Q ss_pred eeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec
Q psy11529 150 ITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN 204 (244)
Q Consensus 150 v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (244)
|.++.+. ..++++-+.|.++|+|++ .+++++.+..
T Consensus 224 Is~~~~~--~~fLftL~~Dh~LRiWsL------------------~t~~lv~t~D 258 (729)
T 3f7f_A 224 ISCKLFH--ERYLIVLTQNCHLKIWDL------------------TSFTLIQDYD 258 (729)
T ss_dssp EEEEEET--TTEEEEEETTCEEEEEET------------------TTTEEEEEEE
T ss_pred EEEeccC--CcEEEEEEcCCeEEEEEc------------------CCCceEEeec
No 382
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=50.24 E-value=61 Score=25.98 Aligned_cols=71 Identities=13% Similarity=0.004 Sum_probs=41.1
Q ss_pred ceEEEEECCC-C-CeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCce-eEEEecCCCCEEEEeeCCCeEEE
Q psy11529 103 AATCVKWSPL-E-NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTI-TCLDWHPNNHLLGCGSTDFKVRV 173 (244)
Q Consensus 103 ~v~~~~~~~~-~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~l~~~~~dg~i~i 173 (244)
..+.|+.... + ..+..|+.+|.|.-.-+..................+| ..+.++++...|++++.++.++|
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 3555555432 2 3466788899876544432211011111112334567 48999999999999888876665
No 383
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=48.72 E-value=69 Score=22.68 Aligned_cols=80 Identities=11% Similarity=0.033 Sum_probs=47.1
Q ss_pred CceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEecCCCCCCCCeEEEEEe-cCCCEEE
Q psy11529 148 STITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFS-KDGNKLC 226 (244)
Q Consensus 148 ~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~ 226 (244)
..|.++....++.+|+..+..|.++...+..-... . ..+.....+.. ...+-.+... .++..|+
T Consensus 84 e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~--~---------r~G~~~i~L~~----~d~lv~~~~~~~~~~~i~ 148 (256)
T 1zvt_A 84 ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVAR--N---------RAGKALITLPE----NAHVMPPVVIEDASDMLL 148 (256)
T ss_dssp CCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCC--S---------TTCEECBCCCT----TCCBCCCEECCCTTCEEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhccc--C---------cCceEEEEECC----CCEEEEEEEecCCCCEEE
Confidence 45666644345667888899999998876321110 0 22333333333 3344444444 3445777
Q ss_pred EeeCCCcEEEEeCCCC
Q psy11529 227 WTSHDGSINVRMSQQV 242 (244)
Q Consensus 227 ~~~~dg~i~vwd~~~~ 242 (244)
..+.+|.+..+.+...
T Consensus 149 l~T~~G~~lrf~~~ei 164 (256)
T 1zvt_A 149 AITQAGRMLMFPVSDL 164 (256)
T ss_dssp EEETTSEEEEEEGGGS
T ss_pred EEcCCCeEEEEEHHHC
Confidence 8888999888887765
No 384
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=48.28 E-value=1.2e+02 Score=25.37 Aligned_cols=28 Identities=7% Similarity=0.059 Sum_probs=20.5
Q ss_pred EEEE-EcCCCCeEEEe-----cCCCeEEEeeecc
Q psy11529 13 TTHA-WNNTRQQLAFT-----PNNQEVHLYQYEK 40 (244)
Q Consensus 13 ~~~~-~~~~~~~l~~~-----~~d~~v~v~~~~~ 40 (244)
..+. ++|++++++.+ +.-..++++|+.+
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t 165 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEK 165 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCc
Confidence 3455 89999988765 2234799999987
No 385
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=47.76 E-value=63 Score=25.62 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=41.1
Q ss_pred ceEEEEeCC----CCC--eEEEEeCCccEEEEeeeCCCCC-------ceeeEEEeccCcceEEEEECCCCCeEEEeeCCC
Q psy11529 57 KVTGIDWAP----NTN--RIVTCSADRNAYVWTQNNDDKK-------WKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123 (244)
Q Consensus 57 ~v~~~~~~~----~~~--~l~~~~~d~~i~iwd~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 123 (244)
..++|+... ++. .++.|+.+|.|.=.-+ ...+. ....+.......+|..+.++++..+|++++.++
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~-~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~ 483 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVS-VPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAG 483 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEEC-C-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSC
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEE-cCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCe
Confidence 345665542 233 4667888887754331 11211 111122222357889999999999999999988
Q ss_pred eEEE
Q psy11529 124 LISV 127 (244)
Q Consensus 124 ~i~i 127 (244)
.++|
T Consensus 484 V~~v 487 (495)
T 1q47_A 484 VAQL 487 (495)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7665
No 386
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=45.50 E-value=99 Score=23.55 Aligned_cols=162 Identities=6% Similarity=0.037 Sum_probs=86.6
Q ss_pred ceEEEEEcCCCCeEEE--ec-------------CCCeEEEeeeccCCC--cceeeeeecc----CCCceEEEEeC---CC
Q psy11529 11 PVTTHAWNNTRQQLAF--TP-------------NNQEVHLYQYEKAAN--DWSQLDVLDG----HDLKVTGIDWA---PN 66 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~--~~-------------~d~~v~v~~~~~~~~--~~~~~~~~~~----~~~~v~~~~~~---~~ 66 (244)
.|..+...+.+++-+. |- .--+|.+||+.+ + +......+.. ....+..+++. |+
T Consensus 88 sV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t--~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~ 165 (381)
T 3q6k_A 88 SIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQ--PNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165 (381)
T ss_dssp CEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSS--TTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred EeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCC--CCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence 5667777776665432 21 112688899987 4 2222222321 23467888887 22
Q ss_pred ----CCeEEEEe-CCccEEEEeeeCCCCCceeeE------------EEec----cCcceEEEEECCC----CCeEEEeeC
Q psy11529 67 ----TNRIVTCS-ADRNAYVWTQNNDDKKWKPTL------------VLLR----INRAATCVKWSPL----ENKFAAGSG 121 (244)
Q Consensus 67 ----~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~------------~~~~----~~~~v~~~~~~~~----~~~l~~~~~ 121 (244)
+.+...+. ..+-|.++| +.+++.-... ...+ -...+..|+.+|+ ++.|+....
T Consensus 166 ~~c~~~~aYItD~~~~gLIVyd--l~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pl 243 (381)
T 3q6k_A 166 GDCSETFVYITNFLRGALFIYD--HKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAG 243 (381)
T ss_dssp TTSCSEEEEEEETTTTEEEEEE--TTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEES
T ss_pred CCCCccEEEEEcCCCCcEEEEE--CCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEEC
Confidence 23333332 367899999 6665422111 1001 1246888999998 677777665
Q ss_pred CCeEEEEEeecC-----CCceEEEee-ecCCCCceeEEEec-CCCCEEEEeeCCCeEEEEEee
Q psy11529 122 ARLISVCYFESE-----NDWWVAKHI-KKPIKSTITCLDWH-PNNHLLGCGSTDFKVRVFSAY 177 (244)
Q Consensus 122 d~~i~i~d~~~~-----~~~~~~~~~-~~~~~~~v~~~~~~-p~~~~l~~~~~dg~i~i~d~~ 177 (244)
.+ -++|.+.+. ......... ..+....-..+++. .+|.++++--+...|..|+..
T Consensus 244 ss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~ 305 (381)
T 3q6k_A 244 SA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQ 305 (381)
T ss_dssp SC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETT
T ss_pred CC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCC
Confidence 44 234444321 110001111 11111334456675 578777777788899999973
No 387
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=45.45 E-value=1.4e+02 Score=25.20 Aligned_cols=114 Identities=13% Similarity=0.175 Sum_probs=55.5
Q ss_pred CCCceEEEEeCCCC-CeEEEEeCCccEEEEeeeCCCCCceeeEEEe-----c----cCcceEEEEECCC-CCeEEEeeCC
Q psy11529 54 HDLKVTGIDWAPNT-NRIVTCSADRNAYVWTQNNDDKKWKPTLVLL-----R----INRAATCVKWSPL-ENKFAAGSGA 122 (244)
Q Consensus 54 ~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~----~~~~v~~~~~~~~-~~~l~~~~~d 122 (244)
-.+.|.+++++|.. ..++.+...+.|...+ -....+....... . ....+.+++++|. ...++.+..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~--DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~ 96 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN--AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGD 96 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC--CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence 45689999999954 5666666666655444 2222222222100 0 1245889999884 3444443321
Q ss_pred -----CeEEEEEeecCCCceEEEeeecCC----CCc--eeEEEecCCC-CEEEEeeCCC
Q psy11529 123 -----RLISVCYFESENDWWVAKHIKKPI----KST--ITCLDWHPNN-HLLGCGSTDF 169 (244)
Q Consensus 123 -----~~i~i~d~~~~~~~~~~~~~~~~~----~~~--v~~~~~~p~~-~~l~~~~~dg 169 (244)
....||.-..+...|......... .+. ...++++|.. ..++.+..++
T Consensus 97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~ 155 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQ 155 (763)
T ss_dssp CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSS
T ss_pred cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCC
Confidence 123444444433334333221110 111 1468888753 4444454443
No 388
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=40.12 E-value=57 Score=19.26 Aligned_cols=46 Identities=15% Similarity=-0.008 Sum_probs=23.4
Q ss_pred EEEECCCCCeEEEeeCCCeEEEEEeecCCCceEEEeeecCCCCceeEEEecCCCCEEEEe
Q psy11529 106 CVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165 (244)
Q Consensus 106 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 165 (244)
.+.+..+|++++.-. ++. .+|...+... .....+.+.++|++++.+
T Consensus 54 ~L~l~~dGnLvL~d~-~~~-~vWss~t~~~------------~~~~~l~L~ddGNlVly~ 99 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDS-SGR-SLWASHSTRG------------SGNYILILQDDGNVIIYG 99 (105)
T ss_dssp EEEECTTSCEEEECT-TCC-EEEECCCCCC------------SSCEEEEECTTSCEEEEE
T ss_pred EEEEeCCccEEEECC-CcE-EEEEecCCCC------------CCCEEEEEeCCCeEEEEC
Confidence 467777877666532 332 3554332211 122345566677766653
No 389
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=39.95 E-value=1.2e+02 Score=25.30 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=35.8
Q ss_pred eEEEEeCCccEE-EEeeeCCCCC-------ceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEE
Q psy11529 69 RIVTCSADRNAY-VWTQNNDDKK-------WKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISV 127 (244)
Q Consensus 69 ~l~~~~~d~~i~-iwd~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 127 (244)
.++.|+.+|.|. +.. ..... .+...........|..+.++++...|++++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~--~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVS--VPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEE--EC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEE--cCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 466788888775 222 11111 0111122245667899999999999999999887765
No 390
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=39.84 E-value=1.2e+02 Score=25.09 Aligned_cols=58 Identities=9% Similarity=-0.019 Sum_probs=36.2
Q ss_pred eEEEEeCCccEEEEeeeCCCCCc-eeeEEEeccCcceEEEEECCCC--CeEEEeeCCCeEEE
Q psy11529 69 RIVTCSADRNAYVWTQNNDDKKW-KPTLVLLRINRAATCVKWSPLE--NKFAAGSGARLISV 127 (244)
Q Consensus 69 ~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i 127 (244)
.++.|+.+|.|.=.-+ ...... ...........+|..+.++++. .+|++++..+.++|
T Consensus 417 V~flGT~~G~l~Kvv~-~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAIS-LEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEE-CSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEe-cCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 5677888887754321 222211 1112222345678899999987 88999988887665
No 391
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=37.18 E-value=1.8e+02 Score=24.19 Aligned_cols=59 Identities=17% Similarity=0.078 Sum_probs=35.6
Q ss_pred eEEEeeCCCeEE-EEEeecCCCc--e-EE--EeeecCCCCceeEEEecCCCCEEEEeeCCCeEEE
Q psy11529 115 KFAAGSGARLIS-VCYFESENDW--W-VA--KHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRV 173 (244)
Q Consensus 115 ~l~~~~~d~~i~-i~d~~~~~~~--~-~~--~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i 173 (244)
.++.|+.+|.|. +......... . .. .........+|..+.++++.+.|++++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 477788899875 3322222110 0 01 1112234568899999999999999988875554
No 392
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=36.57 E-value=1.3e+02 Score=24.64 Aligned_cols=58 Identities=9% Similarity=0.013 Sum_probs=36.0
Q ss_pred eEEEEeCCccEEEEeeeCCCCC---ceeeEEE--eccCcceEEEEECCCCCeEEEeeCCCeEEE
Q psy11529 69 RIVTCSADRNAYVWTQNNDDKK---WKPTLVL--LRINRAATCVKWSPLENKFAAGSGARLISV 127 (244)
Q Consensus 69 ~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 127 (244)
.++.|+.+|.|.-.-+ ...+. ......+ ......+..+.++++...|++++.++.+++
T Consensus 382 VlFLGT~~G~l~Kvv~-~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVE-PGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEEC-CCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEe-cCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 4667888888764331 22221 1111111 124567899999999889999988887665
No 393
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=34.94 E-value=1.4e+02 Score=22.41 Aligned_cols=150 Identities=10% Similarity=0.057 Sum_probs=75.1
Q ss_pred eEEEecCCCeEEEeeeccCC-------Ccceeeeeecc-CCCceEEEEeCCCCCeEEEEeCCccEEEEeeeCCC-C----
Q psy11529 23 QLAFTPNNQEVHLYQYEKAA-------NDWSQLDVLDG-HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD-K---- 89 (244)
Q Consensus 23 ~l~~~~~d~~v~v~~~~~~~-------~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~---- 89 (244)
..+.-..+|.|+.|-....+ ........+.. ....+..++.+.-..+.+....||.|+.|-. .. +
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~--n~~GqLG~ 141 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE--AEDGKLGH 141 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC--CGGGTTCS
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC--CCCCcCCC
Confidence 33333567888888643210 00011111221 2234555667665666677778999999962 11 1
Q ss_pred -CceeeEE---Eec-cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCC--------ceEEEeeecCCCCceeEEEec
Q psy11529 90 -KWKPTLV---LLR-INRAATCVKWSPLENKFAAGSGARLISVCYFESEND--------WWVAKHIKKPIKSTITCLDWH 156 (244)
Q Consensus 90 -~~~~~~~---~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------~~~~~~~~~~~~~~v~~~~~~ 156 (244)
....... +.. ....|..++.. ....+....+|.|..|-.....+ ...+..........+..++..
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 1011111 111 11245555553 34555566788898887644221 011111111122356666654
Q ss_pred CCCCEEEEeeCCCeEEEEEe
Q psy11529 157 PNNHLLGCGSTDFKVRVFSA 176 (244)
Q Consensus 157 p~~~~l~~~~~dg~i~i~d~ 176 (244)
....+.+.-..+|.|+.|-.
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~ 239 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGD 239 (389)
T ss_dssp CSSCEEEEEETTTEEEEEEC
T ss_pred CCCcEEEEEccCCEEEEEeC
Confidence 43345555678999999975
No 394
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=34.84 E-value=1.3e+02 Score=21.94 Aligned_cols=165 Identities=11% Similarity=-0.053 Sum_probs=84.6
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEeeecc---CC----C-cceeeeeeccCCCceEEEEeCC---CCCeEEEEeCCccE
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEK---AA----N-DWSQLDVLDGHDLKVTGIDWAP---NTNRIVTCSADRNA 79 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~---~~----~-~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i 79 (244)
.+..+........++..+..|.++-+.... .+ + .......+.. ...|.++...+ +..+++..+..|.+
T Consensus 48 ~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~ 126 (312)
T 1suu_A 48 EIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKI 126 (312)
T ss_dssp CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEE
T ss_pred EEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeE
Confidence 344444444444555556677766655432 00 0 0000112332 33444443322 45678888899999
Q ss_pred EEEeee-CCC--CCceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCc----eEEEeeecCCCCceeE
Q psy11529 80 YVWTQN-NDD--KKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDW----WVAKHIKKPIKSTITC 152 (244)
Q Consensus 80 ~iwd~~-~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~~v~~ 152 (244)
+.-.+. +.. +.-.....+.. ...+..+.....+..++..+.+|.+..+....-... .-...........+..
T Consensus 127 kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~ 205 (312)
T 1suu_A 127 ARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVK 205 (312)
T ss_dssp EEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEE
T ss_pred EEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEE
Confidence 887731 111 11111222222 445555555444567888889999888876542110 0011111122345666
Q ss_pred EEecCCCCEEEEeeCCCeEEEEEee
Q psy11529 153 LDWHPNNHLLGCGSTDFKVRVFSAY 177 (244)
Q Consensus 153 ~~~~p~~~~l~~~~~dg~i~i~d~~ 177 (244)
+..-+++..+++.+..|..+..++.
T Consensus 206 ~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 206 VLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEECTTCSEEEEEETTSEEEEEEGG
T ss_pred EEEECCCCeEEEEECCCceEEEEHH
Confidence 6555556678888999998888773
No 395
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=31.20 E-value=1.9e+02 Score=23.17 Aligned_cols=68 Identities=7% Similarity=-0.031 Sum_probs=40.8
Q ss_pred eEEEEeCC-CC-CeEEEEeCCccEEEEeeeCCCCC--ceeeEEEeccCcce-EEEEECCCCCeEEEeeCCCeEEE
Q psy11529 58 VTGIDWAP-NT-NRIVTCSADRNAYVWTQNNDDKK--WKPTLVLLRINRAA-TCVKWSPLENKFAAGSGARLISV 127 (244)
Q Consensus 58 v~~~~~~~-~~-~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~i 127 (244)
.++|+... ++ ..++.|+.+|.|.-.-+ ..... ....+.+ ....+| ..+.++++...|++++..+.+++
T Consensus 389 lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~-~~~~~~~~~ee~~v-~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 389 LTAVAVTMEDGHTIAFLGDSQGQLHRVYL-GPGSDGHPYSTQSI-QQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEC-SSSCCSCCSEEEES-STTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred eEEEEEEeecCeEEEEEECCCCeEEEEEE-cCCCCeeEEeeecc-CCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 45555543 22 34556788888774442 11211 1122232 344567 48999999899999998887765
No 396
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=28.45 E-value=1.7e+02 Score=21.28 Aligned_cols=175 Identities=10% Similarity=0.012 Sum_probs=86.8
Q ss_pred CCceEEEEe-C--CCCCeEEEEeCCccEEEEeee-CCCC--CceeeEEEeccCcceEEEEECCCCCeEEEeeCCCeEEEE
Q psy11529 55 DLKVTGIDW-A--PNTNRIVTCSADRNAYVWTQN-NDDK--KWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVC 128 (244)
Q Consensus 55 ~~~v~~~~~-~--~~~~~l~~~~~d~~i~iwd~~-~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 128 (244)
...|.++.. . .++.+++..+..|.++--.+. +... .-...+.+... ..+..+....+...++..+.+|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf 172 (307)
T 1zi0_A 94 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRF 172 (307)
T ss_dssp TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEE
Confidence 345555533 2 345678888999999988731 1111 11111222223 445444444445567778888888777
Q ss_pred EeecCCCc----eEEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEEEEeeecccccCCCCCCCCccccccceeEEec
Q psy11529 129 YFESENDW----WVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELN 204 (244)
Q Consensus 129 d~~~~~~~----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (244)
....-... .-...........|.++...+++..+++.+..|.++-.++.. +....+ . ..+.....+.
T Consensus 173 ~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e--~~~~~R-g------~kG~~~~~~~ 243 (307)
T 1zi0_A 173 KESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE--YPTKSR-A------TKGVISIKVT 243 (307)
T ss_dssp EGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG--SCCCCT-T------SCCEESSCCC
T ss_pred EHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH--hccCCC-C------CCCEEeeEec
Confidence 65432110 001111112234566665555556788888999888776521 110000 0 1111122222
Q ss_pred CCCCCCCCeEEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q psy11529 205 NSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQV 242 (244)
Q Consensus 205 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 242 (244)
.. ...+-.+....+...|+..+.+|.+.-+++...
T Consensus 244 ~~---~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 244 ER---NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp TT---TCSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred CC---CCeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 21 244444443333444556667777666666543
No 397
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=26.46 E-value=2.1e+02 Score=21.54 Aligned_cols=160 Identities=8% Similarity=0.017 Sum_probs=80.1
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEeeeccCC-------Ccceeeeeecc-CCCceEEEEeCCCCCeEEEEeCCccEEEE
Q psy11529 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAA-------NDWSQLDVLDG-HDLKVTGIDWAPNTNRIVTCSADRNAYVW 82 (244)
Q Consensus 11 ~v~~~~~~~~~~~l~~~~~d~~v~v~~~~~~~-------~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 82 (244)
.+..++.+.-..+.+.-..+|.|+.|-....+ ........+.. ....|..++.. ..+.+....+|.|+.|
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTW 183 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEe
Confidence 34445665555555555678999999643210 00011111221 12356666654 3445556678999999
Q ss_pred eeeCCC-CC-----ceeeEEE---ec-cCcceEEEEECCCCCeEEEeeCCCeEEEEEeecCCCc--------eEEEeeec
Q psy11529 83 TQNNDD-KK-----WKPTLVL---LR-INRAATCVKWSPLENKFAAGSGARLISVCYFESENDW--------WVAKHIKK 144 (244)
Q Consensus 83 d~~~~~-~~-----~~~~~~~---~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--------~~~~~~~~ 144 (244)
-. .. ++ ....... .. ....+..++........++...++.|..|-.....+. ..+.....
T Consensus 184 G~--n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 261 (389)
T 3kci_A 184 GK--GRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS 261 (389)
T ss_dssp EC--CGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGG
T ss_pred CC--CCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecc
Confidence 72 21 11 0011111 11 1234666666543356666678899988875442221 11111111
Q ss_pred CCCCceeEEEecCCCCEEEEeeCCCeEEEEEe
Q psy11529 145 PIKSTITCLDWHPNNHLLGCGSTDFKVRVFSA 176 (244)
Q Consensus 145 ~~~~~v~~~~~~p~~~~l~~~~~dg~i~i~d~ 176 (244)
.....|..++.... +.+.-..+|.|+.|-.
T Consensus 262 ~~~~~v~~v~~G~~--hs~alt~~G~v~~wG~ 291 (389)
T 3kci_A 262 LTGLGVVKVECGSQ--FSVALTKSGAVYTWGK 291 (389)
T ss_dssp GTTSCEEEEEEETT--EEEEEETTSCEEEEEC
T ss_pred cCCCcEEEEeCCCC--EEEEEeCCCeEEEEeC
Confidence 11224555555433 3334467899999976
No 398
>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}
Probab=22.53 E-value=2.4e+02 Score=22.48 Aligned_cols=70 Identities=16% Similarity=-0.008 Sum_probs=35.8
Q ss_pred ceEEEEECCCCC--eEEEeeCCCeEEEEEeecCC-Cce-EEEeeecCCCCceeEEEecCCCCEEEEeeCCCeEEE
Q psy11529 103 AATCVKWSPLEN--KFAAGSGARLISVCYFESEN-DWW-VAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRV 173 (244)
Q Consensus 103 ~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~-~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~i~i 173 (244)
.++.|+..+.+. .+..|+.+|.|.-..+.... ... ...........+|. ..+..++++|++++.++.++|
T Consensus 406 ~~T~iav~~~~~~tV~FlGT~~G~l~Kv~~~~~~~~~~~~~~~~~~~~~~pi~-~~l~~~~~~Lyv~s~~~V~~v 479 (527)
T 4fww_A 406 QVTALYVTRLDNVTVAHMGTMDGRILQVELVRSLNYLLYVSNFSLGDSGQPVQ-RDVSRLGDHLLFASGDQVFQV 479 (527)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSCCSSCCCEEEEEEETTSCCCBC-SCCEEETTEEEEEETTEEEEE
T ss_pred EEEEEEEeccCCEEEEEEECCCCeEEEEEEcCCCCcceEEEEEEecCCCceee-hhcccCCCEEEEEECCEEEEE
Confidence 356666665443 47778889987654333222 111 11112222233443 233445568888887765554
No 399
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=21.91 E-value=3.5e+02 Score=22.60 Aligned_cols=60 Identities=13% Similarity=-0.035 Sum_probs=35.8
Q ss_pred CeEEEeeCCCeEEEEEeecCCC-ceEEEee-ecCCCCce-eEEEecCCCCEEEEeeCCCeEEE
Q psy11529 114 NKFAAGSGARLISVCYFESEND-WWVAKHI-KKPIKSTI-TCLDWHPNNHLLGCGSTDFKVRV 173 (244)
Q Consensus 114 ~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~-~~~~~~~v-~~~~~~p~~~~l~~~~~dg~i~i 173 (244)
..+..|+.+|.|.-.-+..... ....... ......+| ..+.++++..+|+.++.++.++|
T Consensus 413 tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 413 SVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp EEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 3467788899887544433211 1111111 22234566 68999998889988887776554
No 400
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=21.56 E-value=2.4e+02 Score=23.52 Aligned_cols=57 Identities=7% Similarity=-0.041 Sum_probs=35.3
Q ss_pred eEEEEeCCccEEEEeeeCCC-CC-cee--eEEEeccCcce-EEEEECCCCCeEEEeeCCCeEEE
Q psy11529 69 RIVTCSADRNAYVWTQNNDD-KK-WKP--TLVLLRINRAA-TCVKWSPLENKFAAGSGARLISV 127 (244)
Q Consensus 69 ~l~~~~~d~~i~iwd~~~~~-~~-~~~--~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~i 127 (244)
.++.|+.+|.|.-.- +.. .. ... .+.......+| ..+.++++...|++++..+.+++
T Consensus 414 VlFLGT~~G~l~Kv~--~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 414 VVFVGTKSGKLKKIR--ADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp EEEEEBTTSEEEEEE--CCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEECCCceEEEEE--ECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 466788889887544 222 11 111 11122234555 68999998889999888877666
Done!