RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11529
(244 letters)
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 86.1 bits (211), Expect = 3e-20
Identities = 129/238 (54%), Positives = 168/238 (70%), Gaps = 7/238 (2%)
Query: 4 VYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDW 63
+SF + P++ HAWN R Q+A PNN EVH+Y+ N W Q+ L H+ +VTG+DW
Sbjct: 2 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS--GNKWVQVHELKEHNGQVTGVDW 59
Query: 64 APNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
AP++NRIVTC DRNAYVW + WKPTLV+LRINRAA CV+W+P E KFA GSG+R
Sbjct: 60 APDSNRIVTCGTDRNAYVW--TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR 117
Query: 124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIES 183
+IS+CYFE ENDWWV KHIKKPI+ST+ LDWHPN+ LL GS DFK R+FSAYIK++E
Sbjct: 118 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 177
Query: 184 APQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241
P T WGSK G + E ++S GW+H V FS +G+++ W SHD ++ + + +
Sbjct: 178 RPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADADK 232
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 59.4 bits (142), Expect = 6e-11
Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 27/183 (14%)
Query: 54 HDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLE 113
H V + AP+T V+ + D +A +W D ++ + + P
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLW----DVREGMCRQTFTGHESDINAICFFPNG 238
Query: 114 NKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRV 173
N FA GS + ++ + + I IT + + + LL G DF V
Sbjct: 239 NAFATGSDDATCRLFDLRADQELM--TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 174 FSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGS 233
+ D + L + + + DG + S D
Sbjct: 297 W-----DALK-------------ADRAGVLAGHD---NRVSCLGVTDDGMAVATGSWDSF 335
Query: 234 INV 236
+ +
Sbjct: 336 LKI 338
Score = 56.7 bits (135), Expect = 4e-10
Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 10/166 (6%)
Query: 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNR 69
V + + + + L+ + GH+ + I + PN N
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWD----VREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 70 IVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCY 129
T S D ++ D + + I T V +S AG +V
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHD--NIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 130 FESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFS 175
+ + ++CL + + GS D +++++
Sbjct: 299 ALK----ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 44.0 bits (102), Expect = 8e-06
Identities = 26/212 (12%), Positives = 59/212 (27%), Gaps = 24/212 (11%)
Query: 50 VLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKW 109
L GH K+ + W ++ +V+ S D +W + + +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT----TNKVHAIPLRSSWVMTCAY 105
Query: 110 SPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF 169
+P N A G + S+ ++ ++C + +N ++
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 170 KVRVFSAYIKDIESAPQSTNWGSK-----------STLGNCLVELNNSSSG--------- 209
+ + T S + +L + G
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 210 GGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241
I+++ F +GN S D + + +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 49.8 bits (117), Expect = 9e-08
Identities = 29/188 (15%), Positives = 53/188 (28%), Gaps = 32/188 (17%)
Query: 63 WAPNTNRIVTCSADRNAYVW---TQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAG 119
+ I S DR VW T ++ + V ++ +G
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272
Query: 120 SGARLISVCYFESEND--------WWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKV 171
S R + + ++ N+ + K + + N+ + GS D V
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332
Query: 172 RVFSAYIKDIESAPQSTNWGSKSTLGNCLVEL---NNSSSGGGWIHSVAFSKDGNKLCWT 228
+ D +S GN L+ L NS + + + N
Sbjct: 333 LFW-----DKKS-------------GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 374
Query: 229 SHDGSINV 236
S D +
Sbjct: 375 SGDCKARI 382
Score = 49.4 bits (116), Expect = 1e-07
Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 13/174 (7%)
Query: 15 HAWNNTRQQLAFTPNNQEVHLYQYEKAANDW---SQLDVLDGHDLKVTGIDWAPNTNRIV 71
+ +A ++ V ++ E S+ + GH V + + + +V
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270
Query: 72 TCSADRNAYVWTQNNDDKK--------WKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
+ S DR+ +W N + K + + V + + +GS R
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
Query: 124 LISVCYFESENDWWVAKHIKKPIKS--TITCLDWHPNNHLLGCGSTDFKVRVFS 175
+ +S N + + + + S P ++ GS D K R++
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
Score = 37.9 bits (86), Expect = 8e-04
Identities = 31/227 (13%), Positives = 62/227 (27%), Gaps = 39/227 (17%)
Query: 53 GHDLKVTGIDWAPNTNRIVTCSADRNAYVW--------------TQNNDDKKWKPTLVLL 98
H V + ++ + + T ++ V+ + N D + T
Sbjct: 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118
Query: 99 RINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPN 158
+ V +SP A G+ RLI + E+ + + ++ I S
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178
Query: 159 NHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLV----------------- 201
G + + T G +
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 202 -------ELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241
E + + ++SV F++DG + S D S+ + Q
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285
Score = 35.5 bits (80), Expect = 0.005
Identities = 28/132 (21%), Positives = 43/132 (32%), Gaps = 18/132 (13%)
Query: 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAN--------DWSQLDVLDGHDLKVTGI 61
+ V + + Q + ++ V L+ + A N + GH V +
Sbjct: 255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314
Query: 62 DWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCV------KWSPLENK 115
N I++ S DR W D K P L+L + V P N
Sbjct: 315 ATTQNDEYILSGSKDRGVLFW----DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370
Query: 116 FAAGSGARLISV 127
FA GSG +
Sbjct: 371 FATGSGDCKARI 382
Score = 34.0 bits (76), Expect = 0.015
Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 4/111 (3%)
Query: 131 ESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNW 190
+ V H S + C+ + + L G + +V+ + + +
Sbjct: 46 ALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA 104
Query: 191 GSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241
+K + ++S S +I SV FS DG L + D I + +
Sbjct: 105 ANKDPEN---LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN 152
Score = 30.2 bits (66), Expect = 0.21
Identities = 25/189 (13%), Positives = 49/189 (25%), Gaps = 13/189 (6%)
Query: 66 NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARL- 124
+ + + ++ + L CVK+S A G
Sbjct: 27 SVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQ 86
Query: 125 ------------ISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVR 172
+S +++ + I + + P+ L G+ D +R
Sbjct: 87 VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 146
Query: 173 VFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG 232
++ + I Q S + S SG + L + DG
Sbjct: 147 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG 206
Query: 233 SINVRMSQQ 241
V +S
Sbjct: 207 VTTVAVSPG 215
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 47.0 bits (110), Expect = 6e-07
Identities = 27/210 (12%), Positives = 56/210 (26%), Gaps = 41/210 (19%)
Query: 43 NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINR 102
+ GH V + + I +CS D+ VW + L
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW----VVATKECKAELREHRH 186
Query: 103 AATCVKWSPLENKFAAGSGARLISVCYFESENDWWVA----------------KHIKKPI 146
C+ W+P + + + +
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246
Query: 147 KSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS 206
+ + + +H + + D +RV+ D ++ C+ LN
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVW-----DYKN-------------KRCMKTLNAH 288
Query: 207 SSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
++ S+ F K + S D ++ V
Sbjct: 289 E---HFVTSLDFHKTAPYVVTGSVDQTVKV 315
Score = 42.0 bits (97), Expect = 3e-05
Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNR 69
N V +++ + + +++ + ++ Y+ + + L+ H+ VT +D+
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYK----NKRCMKTLNAHEHFVTSLDFHKTAPY 303
Query: 70 IVTCSADRNAYVW 82
+VT S D+ VW
Sbjct: 304 VVTGSVDQTVKVW 316
Score = 41.7 bits (96), Expect = 4e-05
Identities = 18/141 (12%), Positives = 42/141 (29%), Gaps = 8/141 (5%)
Query: 34 HLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKP 93
H + E + +++ S D+ +W D
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW----DVSTGMC 239
Query: 94 TLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCL 153
+ L+ + V + + + + + V +++ + +T L
Sbjct: 240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN----KRCMKTLNAHEHFVTSL 295
Query: 154 DWHPNNHLLGCGSTDFKVRVF 174
D+H + GS D V+V+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVW 316
Score = 40.9 bits (94), Expect = 7e-05
Identities = 23/186 (12%), Positives = 48/186 (25%), Gaps = 8/186 (4%)
Query: 50 VLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKW 109
L GH VT + + P + +V+ S D VW D + L + + +
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW----DYETGDFERTLKGHTDSVQDISF 67
Query: 110 SPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF 169
+ + + + ++ + PN + S D
Sbjct: 68 DHSGKLL----ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123
Query: 170 KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS 229
++++ + N L S S + + K
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183
Query: 230 HDGSIN 235
H +
Sbjct: 184 HRHVVE 189
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 44.5 bits (103), Expect = 6e-06
Identities = 29/213 (13%), Positives = 60/213 (28%), Gaps = 26/213 (12%)
Query: 46 SQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVL-------- 97
+ + HD + + + V+CS D VW D +
Sbjct: 5 ATANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 98 -LRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPI------KSTI 150
++ + + A S + + E++ K + K +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 151 TCLDWHP-----NNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNN 205
L W +H L ++ + ES + NW L +
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182
Query: 206 SSSGGGWIHSVAFSKDGNKLCWTSHDGSINVRM 238
S + SV S+ G + ++G++ +
Sbjct: 183 PSQ---FATSVDISERG-LIATGFNNGTVQISE 211
Score = 38.3 bits (87), Expect = 6e-04
Identities = 28/190 (14%), Positives = 58/190 (30%), Gaps = 8/190 (4%)
Query: 49 DVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVK 108
D L H L T + + + + N+ + + + ++ AT V
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191
Query: 109 WSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIK--STITCLDWHPNNHLLGCGS 166
S A G + + + + + I ++I + + P LL
Sbjct: 192 ISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250
Query: 167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLC 226
+ Y + E + + + + S W+ S++F+ G LC
Sbjct: 251 DSNSFGCITLY--ETEFGERIGSLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGETLC 305
Query: 227 WTSHDGSINV 236
DG +
Sbjct: 306 SAGWDGKLRF 315
Score = 31.4 bits (69), Expect = 0.11
Identities = 24/215 (11%), Positives = 53/215 (24%), Gaps = 34/215 (15%)
Query: 27 TPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNN 86
+ + ++ T +D + I T + + +
Sbjct: 156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-GLIATGFNNGTVQISELST 214
Query: 87 DDKKWKPTLVLLRINRAA--TCVKWSPLENKFAAGSGARLISVCYFESENDW-------- 136
+ IN + VK+SP + A +
Sbjct: 215 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV 274
Query: 137 ----WVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGS 192
A + S + L ++ + L D K+R + D+++
Sbjct: 275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW-----DVKT--------- 320
Query: 193 KSTLGNCLVELN-NSSSGGGWIHSVAFSKDGNKLC 226
+ LN + +A + G+ L
Sbjct: 321 ----KERITTLNMHCDDIEIEEDILAVDEHGDSLA 351
Score = 28.7 bits (62), Expect = 0.67
Identities = 18/174 (10%), Positives = 42/174 (24%), Gaps = 19/174 (10%)
Query: 1 MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTG 60
+ +S + + +N+ + + + H V
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294
Query: 61 IDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
+ + + + + D W ++ + I + + A
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
Query: 121 GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVF 174
+ K +KK +S + N L C D +R F
Sbjct: 355 V---------------FDVKFLKKGWRSGM----GADLNESLCCVCLDRSIRWF 389
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 42.1 bits (97), Expect = 3e-05
Identities = 29/199 (14%), Positives = 60/199 (30%), Gaps = 31/199 (15%)
Query: 42 ANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRIN 101
+ L L GH + +V+ S D + VW D + L
Sbjct: 164 PETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDTSIRVW----DVETGNCIHTLTGHQ 217
Query: 102 RAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL 161
+ ++ N +G+ + + + ++ P K N +
Sbjct: 218 SLTSGMELKD--NILVSGNADSTVKIW---DIKTGQCLQTLQGPNKHQSAVTCLQFNKNF 272
Query: 162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGG--GWIHSVAFS 219
+ S D V+++ D+++ G + L SGG G + + S
Sbjct: 273 VITSSDDGTVKLW-----DLKT-------------GEFIRNLVTLESGGSGGVVWRIRAS 314
Query: 220 KDGNKLCWTSHDGSINVRM 238
S +G+ ++
Sbjct: 315 NTKLVCAVGSRNGTEETKL 333
Score = 32.1 bits (71), Expect = 0.049
Identities = 31/204 (15%), Positives = 53/204 (25%), Gaps = 14/204 (6%)
Query: 42 ANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRIN 101
+ VL GHD V NRIV+ S D VW K L+
Sbjct: 3 RGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVW----SAVTGKCLRTLVGHT 57
Query: 102 RAATCVKWSP------LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDW 155
+ ++ A + + V + D
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 156 HPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKST---LGNCLVELNNSSSGGGW 212
+ G + A ++ ++ + G+ + + E + G
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 213 IHSVAFSKDGNKLCWTSHDGSINV 236
+ DG + S D SI V
Sbjct: 178 NRVYSLQFDGIHVVSGSLDTSIRV 201
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 41.4 bits (95), Expect = 5e-05
Identities = 11/113 (9%), Positives = 31/113 (27%), Gaps = 1/113 (0%)
Query: 48 LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCV 107
+ + ++ I P+ + ++ S D + V+ + K L LR C
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLLCC 62
Query: 108 KWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNH 160
+ + + + + + A + + +
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKL 115
Score = 35.2 bits (79), Expect = 0.005
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 18/91 (19%)
Query: 141 HIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCL 200
I++ K I+ + P+ LL S D + V+ +
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKF------------------DIQAKN 46
Query: 201 VELNNSSSGGGWIHSVAFSKDGNKLCWTSHD 231
V+L S + F + + +
Sbjct: 47 VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77
Score = 33.7 bits (75), Expect = 0.017
Identities = 23/227 (10%), Positives = 45/227 (19%), Gaps = 6/227 (2%)
Query: 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNR 69
+P+ + + + Q L + + L + + + +
Sbjct: 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLI 116
Query: 70 IVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCY 129
+ D L ++ G +
Sbjct: 117 AASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR 176
Query: 130 FESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTN 189
D C S D +V V
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF------DDQGDDY 230
Query: 190 WGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
SK C ++ ++S+ FS L DG I+
Sbjct: 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277
Score = 31.7 bits (70), Expect = 0.062
Identities = 15/185 (8%), Positives = 49/185 (26%), Gaps = 33/185 (17%)
Query: 63 WAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGA 122
N++R++ + + + + + +A S
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID 215
Query: 123 RLISVCYFESENDWWVAKHIKKPIK-----------STITCLDWHPNNHLLGCGSTDFKV 171
++V +F+ + D + + + +++ P + L +D +
Sbjct: 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII 275
Query: 172 RVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHD 231
+ ++++ + + V + N LC + D
Sbjct: 276 SCW-----NLQT-------------RKKIKNF----AKFNEDSVVKIACSDNILCLATSD 313
Query: 232 GSINV 236
+
Sbjct: 314 DTFKT 318
Score = 27.9 bits (60), Expect = 1.3
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 212 WIHSVAFSKDGNKLCWTSHDGSINV 236
+I + + L TS DGS+ V
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTV 37
Score = 25.6 bits (54), Expect = 6.2
Identities = 7/80 (8%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 12 VTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIV 71
++ ++ L T + + +Y+++ A + L + + ++ NT+ +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-VDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 72 TCSADRNAYVWTQNNDDKKW 91
+ + +
Sbjct: 73 YVGTVQGEILKVDLIGSPSF 92
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 39.9 bits (91), Expect = 1e-04
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 8/111 (7%)
Query: 57 KVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAA-TCVKWSPLENK 115
T + + P TN I +A+V ++ D K P + + T VK+SP++
Sbjct: 19 FTTHLSYDPTTNAIAYPCGK-SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 116 FAAGSGARLISVCYFESENDWWVA------KHIKKPIKSTITCLDWHPNNH 160
SG V + D K + + I+ + W
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR 128
Score = 34.9 bits (78), Expect = 0.007
Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 15/137 (10%)
Query: 104 ATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHP--NNHL 161
T + + P N A G C + ++ S +T + + P +
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD 221
L G KV V+ ++ + L G I +++ +
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA-------------GPISDISWDFE 126
Query: 222 GNKLCWTSHDGSINVRM 238
G +LC
Sbjct: 127 GRRLCVVGEGRDNFGVF 143
Score = 26.0 bits (55), Expect = 4.6
Identities = 27/228 (11%), Positives = 63/228 (27%), Gaps = 22/228 (9%)
Query: 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNR 69
P++ +W+ ++L ++ + + + GH ++ +
Sbjct: 116 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLG--EVSGHSQRINACHLKQSRPM 173
Query: 70 IVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCY 129
D + V+ Q K + V++SP +F G+ C+
Sbjct: 174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 233
Query: 130 FESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTN 189
++ + ++ D +RV+ D+ +
Sbjct: 234 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW-----DVTT------ 282
Query: 190 WGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT-SHDGSINV 236
C+ + V GN + S DG++N
Sbjct: 283 -------SKCVQKW-TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 37.9 bits (86), Expect = 7e-04
Identities = 22/231 (9%), Positives = 54/231 (23%), Gaps = 17/231 (7%)
Query: 13 TTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLK-------VTGIDWAP 65
A + + LA + + L +E + D K +T + WA
Sbjct: 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR 144
Query: 66 NTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLI 125
+ +++ D + + ++ ++ +
Sbjct: 145 DGSKLYGLGRDLHVMDPEAGTLVEDKP--------IQSWEAETYAQPDVLAVWNQHESSG 196
Query: 126 SVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAP 185
+ + ++ + +D + +A A
Sbjct: 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256
Query: 186 QSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
+ N L +SV S DG+ + G +
Sbjct: 257 GAYNVLESFDLEKN--ASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAA 305
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 37.8 bits (86), Expect = 8e-04
Identities = 28/244 (11%), Positives = 60/244 (24%), Gaps = 14/244 (5%)
Query: 1 MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTG 60
++ V + + A + +++ T N + Y DG + K
Sbjct: 80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR 139
Query: 61 IDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGS 120
P ++ + D + YV + K + ++A
Sbjct: 140 TFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYT------VALPLRNWNRKGYSAPD 193
Query: 121 GARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKD 180
E K K D + + + F+ +
Sbjct: 194 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 253
Query: 181 IESAPQSTNWGSKSTLGNCLVELNNSSSG--------GGWIHSVAFSKDGNKLCWTSHDG 232
+ +S ++ + + + VAF K G+KL
Sbjct: 254 YFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313
Query: 233 SINV 236
+ V
Sbjct: 314 DLAV 317
Score = 26.6 bits (57), Expect = 2.7
Identities = 10/188 (5%), Positives = 39/188 (20%), Gaps = 17/188 (9%)
Query: 60 GIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVL-LRINRAATCVKWSPLENK-FA 117
G ++ + N +V D + +P +
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVV----DVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV 56
Query: 118 AGSGARLISVCYFE--SENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF-KVRVF 174
+ I + + + ++ P+ + ++
Sbjct: 57 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116
Query: 175 SAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSI 234
+ + + ++ + + DG+ +
Sbjct: 117 YVVKPPRLEVFSTADGLEAKPVRTF--------PMPRQVYLMRAADDGSLYVAGPDIYKM 168
Query: 235 NVRMSQQV 242
+V+ +
Sbjct: 169 DVKTGKYT 176
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 37.7 bits (86), Expect = 9e-04
Identities = 11/223 (4%), Positives = 43/223 (19%), Gaps = 20/223 (8%)
Query: 24 LAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGID--------WAPNTNRIVTCSA 75
+ ++ + + + + L + S
Sbjct: 129 IGNCASSACLLFFLFGSS-----AAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSC 183
Query: 76 DRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESEND 135
+ + + + A I +
Sbjct: 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA-AG 242
Query: 136 WWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKST 195
+ I ++ + + + A ++
Sbjct: 243 ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302
Query: 196 LGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS--HDGSINV 236
+G + S G ++ ++DG + + +++
Sbjct: 303 VGQTSGPI----SNGHDSDAIIAAQDGASDNYANSAGTEVLDI 341
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 36.4 bits (82), Expect = 0.002
Identities = 30/192 (15%), Positives = 55/192 (28%), Gaps = 8/192 (4%)
Query: 50 VLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKW 109
L GH V N ++T + D+ V+ D K L L + +K+
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVY----DSINKKFLLQLSGHDGGVWALKY 61
Query: 110 SPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDF 169
+ +GS R + V + V + ++ + + GS D
Sbjct: 62 AH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV--TGSRDN 118
Query: 170 KVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTS 229
+ V+ + + G S GN + S
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178
Query: 230 HDGSINVRMSQQ 241
+D ++ V Q
Sbjct: 179 YDNTLIVWDVAQ 190
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 36.3 bits (82), Expect = 0.002
Identities = 17/163 (10%), Positives = 32/163 (19%), Gaps = 2/163 (1%)
Query: 53 GHDLKVTGIDWAPNTNRIVTCSADRNAYVW-TQNNDDKKWKPTLVLLRINRAATCVKWSP 111
H V + + T + T VW + +K L L + K P
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 112 LENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKV 171
G A +S+ + A+ + C + V
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 172 RVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIH 214
+ + +
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Score = 35.9 bits (81), Expect = 0.003
Identities = 22/220 (10%), Positives = 53/220 (24%), Gaps = 32/220 (14%)
Query: 17 WNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSAD 76
+ + + ++ + + GH + ID + + ++ T D
Sbjct: 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204
Query: 77 RNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDW 136
W + + + + P A G + + V + + +
Sbjct: 205 NTVRSWDLREGRQLQQHD-----FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY 259
Query: 137 WVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTL 196
+ H +S + L + D + +
Sbjct: 260 QLHLH-----ESCVLSLKFAYCGKWFVSTGKDNLLNAWRT------------------PY 296
Query: 197 GNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
G + + + S S D + S D V
Sbjct: 297 GASIFQSK----ESSSVLSCDISVDDKYIVTGSGDKKATV 332
Score = 35.6 bits (80), Expect = 0.004
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 106 CVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCG 165
+K++ F + L++ + +K S++ D ++ + G
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-----SSSVLSCDISVDDKYIVTG 324
Query: 166 STDFKVRVFS 175
S D K V+
Sbjct: 325 SGDKKATVYE 334
Score = 32.5 bits (72), Expect = 0.034
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Query: 16 AWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA 75
+ + T + ++ ++ V D + + IVT S
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTPY-----GASIFQSKESSSVLSCDISVDDKYIVTGSG 326
Query: 76 DRNAYVW 82
D+ A V+
Sbjct: 327 DKKATVY 333
Score = 31.3 bits (69), Expect = 0.100
Identities = 24/241 (9%), Positives = 50/241 (20%), Gaps = 15/241 (6%)
Query: 10 NPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDV-LDGHDLKVTGIDWAPNTN 68
V +N + + T V ++ N + D + P+
Sbjct: 52 EVVCAVTISNPTRHVY-TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC 110
Query: 69 RIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVC 128
++ +W + K L A + G +
Sbjct: 111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170
Query: 129 YFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQST 188
+ ++ + L + D S S
Sbjct: 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL 230
Query: 189 NWGSKSTLGNCLVELNNSSSG-------------GGWIHSVAFSKDGNKLCWTSHDGSIN 235
+ +E +N + S+ F+ G T D +N
Sbjct: 231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290
Query: 236 V 236
Sbjct: 291 A 291
Score = 30.2 bits (66), Expect = 0.20
Identities = 10/95 (10%), Positives = 21/95 (22%), Gaps = 17/95 (17%)
Query: 147 KSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNS 206
+ + + G V+V W V +
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKV----------------WDISHPGNKSPVSQLDC 93
Query: 207 SSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQ 241
+ +I S DG L ++++
Sbjct: 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 34.8 bits (78), Expect = 0.007
Identities = 15/190 (7%), Positives = 36/190 (18%), Gaps = 31/190 (16%)
Query: 53 GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAA---TCVKW 109
+ + ++ + S + + ++ I K
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 235
Query: 110 SPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL---LGCGS 166
P AG N + P++S+I +
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 295
Query: 167 TDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLC 226
+ + + + + + S D +
Sbjct: 296 EKGVLLKYDVKTRKVTEVK-------------------------NNLTDLRLSADRKTVM 330
Query: 227 WTSHDGSINV 236
DG I
Sbjct: 331 VRKDDGKIYT 340
Score = 33.3 bits (74), Expect = 0.022
Identities = 16/173 (9%), Positives = 39/173 (22%), Gaps = 14/173 (8%)
Query: 10 NPVTTHAWNNTRQQLAFTPNNQEVHLY---QYEKAANDWSQLDVLDGHDLKVTGIDWAPN 66
+ A++ + L + + S+ V+ P
Sbjct: 179 SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR 238
Query: 67 TNRIVTCS---ADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGAR 123
+ D N D ++ + L + +
Sbjct: 239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 298
Query: 124 LISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSA 176
++ + V +K+ +T L + + D K+ F
Sbjct: 299 VLLK--------YDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343
Score = 29.4 bits (64), Expect = 0.38
Identities = 6/75 (8%), Positives = 20/75 (26%), Gaps = 8/75 (10%)
Query: 8 GINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNT 67
I + P + Y + ++ + + +T + + +
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-----KVTEVKNN---LTDLRLSADR 326
Query: 68 NRIVTCSADRNAYVW 82
++ D Y +
Sbjct: 327 KTVMVRKDDGKIYTF 341
Score = 27.5 bits (59), Expect = 1.5
Identities = 13/190 (6%), Positives = 39/190 (20%), Gaps = 9/190 (4%)
Query: 53 GHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPL 112
L++ + +T ++ + K + L A +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 113 ENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVR 172
+ + + + IT N+ + G
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREA-------MITDFTISDNSRFIAYGFPLKHGE 152
Query: 173 VFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDG 232
++ I +T N + ++ + S
Sbjct: 153 TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYL--SYRSLDPSPDRVVL 210
Query: 233 SINVRMSQQV 242
+ + + +
Sbjct: 211 NFSFEVVSKP 220
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 34.8 bits (78), Expect = 0.008
Identities = 16/196 (8%), Positives = 39/196 (19%), Gaps = 6/196 (3%)
Query: 44 DWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDD--KKWKPTLVLLRIN 101
D D+ + + D + + + +
Sbjct: 135 DLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 194
Query: 102 RAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHL 161
+S + + I S + ++ +
Sbjct: 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV 254
Query: 162 LGCGSTDFKVRVFSAYIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKD 221
+ D + + + G L + G I S+ S+D
Sbjct: 255 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF----EMGHEIDSINVSQD 310
Query: 222 GNKLCWTSHDGSINVR 237
L + G +
Sbjct: 311 EKPLLYALSTGDKTLY 326
Score = 26.3 bits (56), Expect = 3.7
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 210 GGWIHSVAFSKDGNKLCWTSHDGSINVRMSQ 240
GG++ + + DG+ + S S R +
Sbjct: 46 GGFLPNPVVADDGSFIAHASTVFSRIARGER 76
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 33.8 bits (75), Expect = 0.013
Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 5/119 (4%)
Query: 50 VLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAA-TCVK 108
V GH+ +T + + + + + A+ + W D V ++ T +K
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSW----DISTGISNRVFPDVHATMITGIK 62
Query: 109 WSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGST 167
+ + F L V S D A K + + + + C
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121
Score = 26.5 bits (56), Expect = 3.5
Identities = 4/30 (13%), Positives = 8/30 (26%)
Query: 147 KSTITCLDWHPNNHLLGCGSTDFKVRVFSA 176
IT L + L + + +
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDI 41
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 33.3 bits (74), Expect = 0.022
Identities = 15/224 (6%), Positives = 39/224 (17%), Gaps = 8/224 (3%)
Query: 14 THAWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTC 73
TH + + Q F + ++ + + + +P+ +
Sbjct: 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVP 145
Query: 74 SADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESE 133
+ ++ +DD + + C E
Sbjct: 146 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH-------MVFHPNEQYAYCVNELN 198
Query: 134 NDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDIESAPQSTNWGSK 193
+ V + + S
Sbjct: 199 SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS 258
Query: 194 STLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWT-SHDGSINV 236
+ ++ G L I+V
Sbjct: 259 VSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISV 302
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 30.3 bits (66), Expect = 0.16
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 42 ANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWT 83
+ L+ H V + W + +V+ AD W
Sbjct: 245 KRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285
Score = 25.7 bits (54), Expect = 5.8
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 48 LDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVW 82
L + GH+ +T + P +++ S D W
Sbjct: 6 LKTISGHNKGITALTVNP----LISGSYDGRIMEW 36
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 30.2 bits (66), Expect = 0.19
Identities = 11/87 (12%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 1 MAEVYSFGINPVTTHAWNNTRQQLAFTPNNQEVHLYQYEKAAN-----DWSQLDVLDGHD 55
A + + +++ + ++ ++ A + L L H
Sbjct: 208 GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 267
Query: 56 LKVTGIDWAPNTNRIVTCSADRNAYVW 82
+V + + +IV+ S D +W
Sbjct: 268 GRVFRLQFDEF--QIVSSSHDDTILIW 292
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 29.6 bits (65), Expect = 0.37
Identities = 7/68 (10%), Positives = 18/68 (26%)
Query: 16 AWNNTRQQLAFTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSA 75
N +R + + ++ + + + + W P + A
Sbjct: 168 FVNASRYKGDYLFTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGWRPGGMQQTAVQA 227
Query: 76 DRNAYVWT 83
+N Y
Sbjct: 228 KQNRYYVL 235
Score = 27.6 bits (60), Expect = 1.3
Identities = 19/179 (10%), Positives = 37/179 (20%), Gaps = 3/179 (1%)
Query: 58 VTGIDWAPNTNRI-VTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKF 116
+ P + A T + + K+ K T+ I+ + K
Sbjct: 117 AACVLAYPAGDDRFTALCESGKALTVTLDANGKEAKRTMSDAFIDVDKDPAFVNASRYKG 176
Query: 117 AAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSA 176
+V + D + W P
Sbjct: 177 DYLFTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGWRPGGMQQTAVQAKQNRYYVLM 236
Query: 177 YIKDIESAPQSTNWGSKSTLGNCLVELNNSSSGG--GWIHSVAFSKDGNKLCWTSHDGS 233
+ S L + + + S+ S+D L + S
Sbjct: 237 HKGTDGSHKDPGTQVWVYDLKSKQRVARWDLAQQKVEPLVSIQVSEDDKPLFYGLTATS 295
Score = 26.9 bits (58), Expect = 2.4
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 210 GGWIHSVAFSKDGNKLCWTSHDGSINVRMS 239
GG+ A + D + S +
Sbjct: 16 GGFGPGFAIAPDRKASVVATTYFSRGSHGT 45
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 28.2 bits (62), Expect = 0.96
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 209 GGGWIHSVAFSKDGNKLCWTSHDGSINV 236
G +H S G L DG +N+
Sbjct: 60 TGYAVHISRLSASGRYLFVIGRDGKVNM 87
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 28.4 bits (62), Expect = 0.97
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 209 GGGWIHSVAFSKDGNKLCWTSHDGSINV 236
G +H S G L D I++
Sbjct: 60 TGYAVHISRMSASGRYLLVIGRDARIDM 87
Score = 25.3 bits (54), Expect = 9.0
Identities = 29/221 (13%), Positives = 64/221 (28%), Gaps = 27/221 (12%)
Query: 26 FTPNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGIDWAPNTNRIVT--CSADRNAYVWT 83
F N +E + + G + W + +T ++++ A + +
Sbjct: 177 FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDS 236
Query: 84 QNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIK 143
++ R A V + G IS+ + +N A
Sbjct: 237 KDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV 296
Query: 144 KPIK---STITCLDWHPNNHLLGC-------GSTDFKVRVFSAYIKDIESAPQSTNWGSK 193
++ + HP + L V VF +K++++ Q
Sbjct: 297 AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD--LKNLDAKYQVLPIAEW 354
Query: 194 STLGNCLVELNNSSSGGGWIHSVAFSKDGNKL---CWTSHD 231
+ LG G + ++K G+++ W +
Sbjct: 355 ADLGE----------GAKRVVQPEYNKRGDEVWFSVWNGKN 385
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 27.2 bits (58), Expect = 2.0
Identities = 5/49 (10%), Positives = 13/49 (26%)
Query: 43 NDWSQLDVLDGHDLKVTGIDWAPNTNRIVTCSADRNAYVWTQNNDDKKW 91
+ ++ H + T +P+ + N +W
Sbjct: 46 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94
Score = 26.8 bits (57), Expect = 2.3
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 104 ATCVKWSPLENKFAAGSGARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLG 163
A + +P +K +G + +V + +H T P+ +
Sbjct: 20 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEH-----SHQTTVAKTSPSGYYCA 74
Query: 164 CGSTDFKVRVF 174
G VR++
Sbjct: 75 SGDVHGNVRIW 85
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 281
Score = 26.7 bits (57), Expect = 2.6
Identities = 27/235 (11%), Positives = 52/235 (22%), Gaps = 18/235 (7%)
Query: 6 SFGINPVTTHAWNNTRQQLAFT----PNNQEVHLYQYEKAANDWSQLDVLDGHDLKVTGI 61
+ + + +++A + LY Y + ++ G
Sbjct: 37 VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMF 96
Query: 62 DWAPNTNRIVTCSADRNAYVWTQNNDDKKWKPTLVLLRINRAATCVKWSPLENKFAAGSG 121
D N + T L + + G
Sbjct: 97 TDVA------GFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADG 150
Query: 122 ARLISVCYFESENDWWVAKHIKKPIKSTITCLDWHPNNHLLGCGSTDFKVRVFSAYIKDI 181
R+I FE W K I + + I I
Sbjct: 151 RRVIGRNTFE--LPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTH-VSSPVIVGHRIYFI 207
Query: 182 ESAPQSTNWGSKSTLGNCLVELNNSSSGGGWIHSVAFSKDGNKLCWTSHDGSINV 236
S G L + + + + DG ++ ++ GSI +
Sbjct: 208 TDIDGFGQIYSTDLDGKDLRKH----TSFTDYYPRHLNTDGRRILFSK-GGSIYI 257
Score = 25.5 bits (54), Expect = 7.2
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 207 SSGGGWIHSVAFSKDGNKLCWTSHDGSINVRMSQQVLP 244
S G I++ F DG K+ GS
Sbjct: 37 VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN 74
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 130
Score = 25.9 bits (57), Expect = 3.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 11 PVTTHAWNNTRQQLAFTPNNQEVHLYQY 38
P+T +W N Q+A+ + EV L QY
Sbjct: 1 PLTIVSWLNVYMQVAYLNDLHEVLLPQY 28
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 26.4 bits (56), Expect = 3.5
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 208 SGGGWIHSVAFSKDGNKLCWT-SHDGSINV 236
G +A + DG K+ S +++V
Sbjct: 241 PVGPDPAGIAVTPDGKKVYVALSFCNTVSV 270
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.429
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 969,472
Number of extensions: 43193
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 110
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)