BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1153
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VEH|A Chain A, Solution Structure Of Rsgi Ruh-018, A Nifu-Like Domain Of
Hirip5 Protein From Mouse Cdna
Length = 92
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 60/65 (92%)
Query: 123 VQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQ 182
V MIKELLDTRIRPTVQEDGGD+ + F+ G+V+LK+QGSCTSCPSS++TLK+G+QNMLQ
Sbjct: 15 VAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQ 74
Query: 183 FYIPE 187
FYIPE
Sbjct: 75 FYIPE 79
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 28/32 (87%)
Query: 1 MIKELLDTRIRPTVQEDGGDIQFISFQDGVLE 32
MIKELLDTRIRPTVQEDGGD+ + F+DG++
Sbjct: 17 MIKELLDTRIRPTVQEDGGDVIYRGFEDGIVR 48
>pdb|2LTM|A Chain A, Solution Nmr Structure Of Nfu1 Iron-Sulfur Cluster
Scaffold Homolog From Homo Sapiens, Northeast Structural
Genomics Consortium (Nesg) Target Hr2876b
Length = 107
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 63/71 (88%)
Query: 36 QTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMD 95
+T+DFPT AA+ SPL + LFRIEGVKSVFFG D ITVTK+++++DW LLKP+I+ATIMD
Sbjct: 36 RTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPDIYATIMD 95
Query: 96 FFSSGLPVLTD 106
FF+SGLP++T+
Sbjct: 96 FFASGLPLVTE 106
>pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like
Protein From Oryza Sativa
Length = 91
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 122 TVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNML 181
T ++ +LD ++RP + DGGD+ G VV+LK+QG+C SCPSS++T+K G++ L
Sbjct: 6 TAGNVESVLD-QVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRL 64
Query: 182 QFYIPETT 189
IP+
Sbjct: 65 MEKIPDVA 72
>pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron-
Sulfur Cluster Biosynthesis
Length = 154
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 122 TVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNML 181
T + ++ +LD IRP + DGG++ G VV++K+QG+C SCPSS +T+K G++ L
Sbjct: 5 TEENVESVLD-EIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRL 63
Query: 182 QFYIPE 187
IPE
Sbjct: 64 MEKIPE 69
>pdb|1XHJ|A Chain A, Solution Structure Of The Staphylococcus Epidermidis
Protein Se0630. Northest Structural Genomics Consortium
Target Ser8
Length = 88
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 133 RIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIP 186
R+RP + DGGD + + G+VKL++ G+C +CPSS +TLK G++ L +P
Sbjct: 18 RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVP 71
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 9 RIRPTVQEDGGDIQFISFQDGVLE 32
R+RP + DGGD + +DG+++
Sbjct: 18 RLRPFLLRDGGDCTLVDVEDGIVK 41
>pdb|2K1H|A Chain A, Solution Nmr Structure Of Ser13 From Staphylococcus
Epidermidis. Northeast Structural Genomics Consortium
Target Ser13
Length = 94
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 31 LEEPGQTIDFPTGQAAYCS--PLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPE 88
L EP Q F T AA LF IEGVKS+F+ DFI++ K+ D+ +W L P+
Sbjct: 19 LSEPRQDNSFTTYTAAQEGQPEFINRLFEIEGVKSIFYVLDFISIDKE-DNANWNELLPQ 77
Query: 89 I 89
I
Sbjct: 78 I 78
>pdb|2FFM|A Chain A, X-Ray Crystal Structure Of Protein Sav1430 From
Staphylococcus Aureus. Northeast Structural Genomics
Consortium Target Zr18
Length = 91
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 55 LFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFA 91
+ ++EGVKS+F DFI+V K+ +D +W+ + P++ A
Sbjct: 45 ILKVEGVKSIFHVXDFISVDKE-NDANWETVLPKVEA 80
>pdb|1PQX|A Chain A, Solution Nmr Structure Of Staphylococcus Aureus Protein
Sav1430. Northeast Strucutral Genomics Consortium
Target Zr18
Length = 91
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 55 LFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFA 91
+ ++EGVKS+F DFI+V K+ +D +W+ + P++ A
Sbjct: 45 ILKVEGVKSIFHVMDFISVDKE-NDANWETVLPKVEA 80
>pdb|2LTL|A Chain A, Solution Nmr Structure Of Nifu-Like Protein From
Saccharomyces Cerevisiae, Northeast Structural Genomics
Consortium (Nesg) Target Yr313a
Length = 119
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 60 GVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMDFFSSGLPVLT 105
GV+S+ G DF+T+ K D V W +KPEI + + G V++
Sbjct: 73 GVESLMIGDDFLTINK-DRMVHWNSIKPEIIDLLTKQLAYGEDVIS 117
>pdb|1TH5|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like
Protein From Oryza Sativa
Length = 74
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 117 EDDDETVQMIKELLDTRIRPTVQ-EDGGDIQFISFQGGVVKLKMQGSCTSCPSSVV-TLK 174
E ++E V E + IRP + GG +QF+ +G +VK+++ G P++VV T++
Sbjct: 3 ELNEENV----EKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTG-----PAAVVRTVR 53
Query: 175 NGVQNMLQFYIP 186
V L+ IP
Sbjct: 54 IAVSKKLREKIP 65
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 56 FRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMD 95
R+ K++F GH + +DV W LL +F ++ D
Sbjct: 220 HRVIDAKNIFTGHTAVV-----EDVAWHLLHESLFGSVAD 254
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 56 FRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMD 95
R+ K++F GH + +DV W LL +F ++ D
Sbjct: 218 HRVIDAKNIFTGHTAVV-----EDVAWHLLHESLFGSVAD 252
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 56 FRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMD 95
R+ K++F GH + +DV W LL +F ++ D
Sbjct: 222 HRVIDAKNIFTGHTAVV-----EDVAWHLLHESLFGSVAD 256
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 57 RIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMD 95
+I K++F GH + +DV W LL +F ++ D
Sbjct: 217 KIVDAKAIFTGHSAVV-----EDVAWHLLHESLFGSVAD 250
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 57 RIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMD 95
+I K++F GH + +DV W LL +F ++ D
Sbjct: 217 KIVDAKAIFTGHSAVV-----EDVAWHLLHESLFGSVAD 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,028,223
Number of Sequences: 62578
Number of extensions: 247647
Number of successful extensions: 502
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 23
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)