Query psy1153
Match_columns 195
No_of_seqs 187 out of 1551
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 20:46:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z51_A NIFU-like protein 2, ch 100.0 9.6E-32 3.3E-36 211.8 4.9 142 2-194 9-154 (154)
2 1veh_A NIFU-like protein hirip 100.0 8.6E-30 2.9E-34 184.6 7.9 81 114-194 6-86 (92)
3 1xhj_A Nitrogen fixation prote 100.0 7.4E-29 2.5E-33 178.2 7.0 75 119-194 5-79 (88)
4 1th5_A NIFU1; iron-sulfur clus 99.9 2.9E-24 1E-28 149.6 4.2 69 122-195 5-74 (74)
5 2z51_A NIFU-like protein 2, ch 99.9 7.6E-24 2.6E-28 166.7 5.9 71 123-194 6-76 (154)
6 2ltm_A NFU1 iron-sulfur cluste 99.7 7.6E-23 2.6E-27 151.6 0.0 86 19-105 8-105 (107)
7 2ltl_A NIFU-like protein, mito 99.7 3.1E-22 1E-26 150.9 0.0 88 17-105 12-117 (119)
8 2k1h_A Uncharacterized protein 99.8 9.7E-20 3.3E-24 132.2 5.7 69 28-98 19-87 (94)
9 1pqx_A Conserved hypothetical 99.8 6.2E-19 2.1E-23 127.2 4.9 66 28-95 19-84 (91)
10 1veh_A NIFU-like protein hirip 99.2 1.9E-12 6.6E-17 93.3 -1.3 68 1-68 17-87 (92)
11 1xhj_A Nitrogen fixation prote 99.1 4E-12 1.4E-16 91.0 -0.2 66 2-68 12-80 (88)
12 1th5_A NIFU1; iron-sulfur clus 98.8 8.5E-10 2.9E-14 76.4 0.2 60 2-66 9-72 (74)
13 3cq1_A Putative uncharacterize 98.2 8.9E-06 3E-10 59.0 8.4 70 121-192 6-78 (103)
14 3lno_A Putative uncharacterize 97.8 6.2E-05 2.1E-09 55.0 7.1 73 119-192 6-82 (108)
15 1uwd_A Hypothetical protein TM 97.6 0.00019 6.5E-09 51.8 7.0 68 123-192 8-79 (103)
16 3ux2_A MIP18 family protein FA 90.0 0.18 6E-06 38.0 2.7 69 123-192 10-88 (130)
17 3cq1_A Putative uncharacterize 76.3 4.4 0.00015 28.4 4.9 73 2-83 11-88 (103)
18 1xg8_A Hypothetical protein SA 67.9 3.9 0.00013 29.6 2.9 25 163-188 22-46 (111)
19 4ecd_A Chorismate synthase; 4- 51.1 13 0.00044 32.8 3.9 63 9-76 214-276 (398)
20 1uwd_A Hypothetical protein TM 46.8 33 0.0011 23.6 4.9 81 2-91 11-99 (103)
21 3fry_A Probable copper-exporti 44.5 15 0.0005 23.0 2.5 30 154-192 6-36 (73)
22 3bej_E Nuclear receptor coacti 39.9 12 0.00043 19.8 1.2 11 166-176 1-11 (26)
23 1qxo_A Chorismate synthase; be 39.9 13 0.00043 32.7 2.0 30 45-74 237-266 (388)
24 2zzt_A Putative uncharacterize 39.2 92 0.0031 21.4 7.6 62 122-191 11-78 (107)
25 3hdu_A Putative thioesterase; 38.2 1.1E+02 0.0039 22.1 8.2 60 119-181 9-69 (157)
26 1q1l_A Chorismate synthase; be 37.3 21 0.00072 31.4 3.0 60 10-74 220-279 (401)
27 2o11_A Chorismate synthase; sh 33.7 15 0.00052 32.4 1.5 29 45-73 242-270 (407)
28 1q8l_A Copper-transporting ATP 32.9 43 0.0015 21.1 3.5 30 154-191 10-40 (84)
29 3lno_A Putative uncharacterize 32.5 62 0.0021 22.5 4.4 85 2-93 13-104 (108)
30 1um0_A Chorismate synthase; be 29.0 23 0.00077 30.8 1.8 58 14-73 197-255 (365)
31 1sq1_A Chorismate synthase; st 28.8 23 0.00078 30.9 1.8 30 45-74 224-253 (370)
32 4hde_A SCO1/SENC family lipopr 28.3 19 0.00065 26.8 1.1 48 140-188 20-69 (170)
33 1xn7_A Hypothetical protein YH 27.4 20 0.00067 24.0 0.9 10 160-169 58-67 (78)
34 2k53_A A3DK08 protein; NESG, C 27.3 16 0.00055 24.3 0.5 16 162-177 29-45 (76)
35 1kvi_A Copper-transporting ATP 27.1 1.1E+02 0.0036 18.5 4.6 30 154-191 9-39 (79)
36 1mwy_A ZNTA; open-faced beta-s 23.7 65 0.0022 19.3 2.9 29 155-191 5-34 (73)
37 3e1e_A Thioesterase family pro 23.5 96 0.0033 21.8 4.2 38 119-160 4-41 (141)
38 2k02_A Ferrous iron transport 23.1 24 0.00083 24.2 0.8 11 160-170 58-68 (87)
39 2raq_A Conserved protein MTH88 23.0 1E+02 0.0035 21.6 4.0 40 50-89 23-69 (97)
40 3prb_A FKBP-type peptidyl-prol 22.9 1.1E+02 0.0036 24.7 4.7 65 123-194 153-217 (231)
41 1r53_A Chorismate synthase; tw 22.2 22 0.00076 31.1 0.5 29 45-73 236-264 (382)
42 2x3d_A SSO6206; unknown functi 20.8 1.1E+02 0.0038 21.4 3.8 40 50-89 22-68 (96)
43 3iqt_A Signal transduction his 20.4 28 0.00096 25.1 0.7 30 157-186 66-96 (123)
44 3e8p_A Uncharacterized protein 20.2 1E+02 0.0035 22.7 3.9 40 118-160 15-54 (164)
No 1
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.97 E-value=9.6e-32 Score=211.84 Aligned_cols=142 Identities=20% Similarity=0.365 Sum_probs=123.3
Q ss_pred HHHHHhhccCCccccCCCceEEEEecCCcccCC--CccccCCCcccccCChHHhhhc-ccCCeeEEEeecceEEEEecCC
Q psy1153 2 IKELLDTRIRPTVQEDGGDIQFISFQDGVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVFFGHDFITVTKQDD 78 (195)
Q Consensus 2 ~~~~l~~~irp~~~~d~g~~~fi~~e~~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~~~~dfVtVtk~~~ 78 (195)
|+++|+ +|||+|+.||||++|+.+++|..++. |+|.+|+++..|.+..+.+.|. .+|+|+.|....+
T Consensus 9 v~~~L~-~iRP~l~~dGGdvelv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~v~~--------- 78 (154)
T 2z51_A 9 VESVLD-EIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPD--------- 78 (154)
T ss_dssp HHHHHH-HHHHHHHHTTEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEECCS---------
T ss_pred HHHHHH-HhChHHHhcCCeEEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEEEccC---------
Confidence 678997 89999999999999999998877775 8899999999999999999999 6999988875431
Q ss_pred CCCccchhHHHHHHHHHhhhcCCCcccCCCCCCCCCCCCCchHHHHHHHHHHHhcCchhhhc-cCCcEEEEEEeCCEEEE
Q psy1153 79 DVDWKLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTRIRPTVQE-DGGDIQFISFQGGVVKL 157 (195)
Q Consensus 79 ~~~W~~l~~~i~~~I~d~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~irP~l~~-dGG~ie~v~~~~g~v~v 157 (195)
...+ .+-..++|+++|+ .|||+|++ ||||++|+++++|+|+|
T Consensus 79 ~~e~------------------------------------l~L~~~~v~~~L~-~iRP~L~~~dGGdvelv~v~~~~v~v 121 (154)
T 2z51_A 79 EETG------------------------------------LELNEENIEKVLE-EIRPYLIGTADGSLDLVEIEDPIVKI 121 (154)
T ss_dssp SCCS------------------------------------CCSSHHHHHHHHH-HHGGGCCGGGCCEEEEEEEETTEEEE
T ss_pred chhh------------------------------------hHHHHHHHHHHHH-HHHHHhhhcCCCCeEEEEEECCEEEE
Confidence 1000 0112578999999 69999997 99999999999999999
Q ss_pred EEcccCCCCcchHHHHHHHHHHHHHhhCCCccceeeC
Q psy1153 158 KMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNM 194 (195)
Q Consensus 158 ~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~ 194 (195)
||+|+|+|| +||+.+||++||+++|+|++|..+
T Consensus 122 ~l~Gac~~~----~Tlk~~Ie~~l~e~vP~i~~V~~~ 154 (154)
T 2z51_A 122 RITGPAAGV----MTVRVAVTQKLREKIPSIAAVQLI 154 (154)
T ss_dssp EEESGGGGC----HHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred EEecCCccc----HhHHHHHHHHHHHHCCCccEEEeC
Confidence 999999998 799999999999999999999764
No 2
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=99.96 E-value=8.6e-30 Score=184.60 Aligned_cols=81 Identities=67% Similarity=1.075 Sum_probs=77.3
Q ss_pred CCCCCchHHHHHHHHHHHhcCchhhhccCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccceee
Q psy1153 114 VIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLN 193 (195)
Q Consensus 114 ~~~~~~~~~~~~i~~~l~~~irP~l~~dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~ 193 (195)
..+++++++.++|+++|+++|||+|++|||||+|++|++|+|+|||+|||+|||||++||+++||++|++++|++++|..
T Consensus 6 ~~~~~d~~~~~~I~~~L~~~IRP~L~~dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~ 85 (92)
T 1veh_A 6 SGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQ 85 (92)
T ss_dssp SSCSSCCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEE
T ss_pred ccCCCchHHHHHHHHHHHHHhhHHHHhcCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy1153 194 M 194 (195)
Q Consensus 194 ~ 194 (195)
+
T Consensus 86 v 86 (92)
T 1veh_A 86 V 86 (92)
T ss_dssp C
T ss_pred c
Confidence 5
No 3
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=99.95 E-value=7.4e-29 Score=178.21 Aligned_cols=75 Identities=31% Similarity=0.679 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHHhcCchhhhccCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccceeeC
Q psy1153 119 DDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNM 194 (195)
Q Consensus 119 ~~~~~~~i~~~l~~~irP~l~~dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~ 194 (195)
++++.++|+++|++ |||+|++|||||+|++|++|+|+|||+|||+|||||++||+++||++|++++|+++.|..+
T Consensus 5 ~~~~~~~I~~~L~~-IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v 79 (88)
T 1xhj_A 5 NPTMFDQVAEVIER-LRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV 79 (88)
T ss_dssp CSCHHHHHHHHHHH-HHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred hHHHHHHHHHHHHH-hcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEec
Confidence 45689999999996 9999999999999999999999999999999999999999999999999999999999864
No 4
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=99.89 E-value=2.9e-24 Score=149.64 Aligned_cols=69 Identities=25% Similarity=0.457 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCchhhhccC-CcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccceeeCC
Q psy1153 122 TVQMIKELLDTRIRPTVQEDG-GDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNME 195 (195)
Q Consensus 122 ~~~~i~~~l~~~irP~l~~dG-G~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~~ 195 (195)
+.++|+++|++ |||+|++|| ||++|++|++|+|+|||+|||+|| +||+++||++|++++|++++|..+.
T Consensus 5 ~~~~V~~~L~~-iRP~L~~dGGGdvelv~v~~g~V~v~l~GaC~gc----~Tlk~gIe~~L~~~vpei~~V~~v~ 74 (74)
T 1th5_A 5 NEENVEKVLNE-IRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVV----RTVRIAVSKKLREKIPSIQIVQLLS 74 (74)
T ss_dssp SHHHHHHHHTT-THHHHTTTTCCCCCCCEEETTEEEECCCSSSSSS----SSHHHHHHHHHHHHCTTCSEEEECC
T ss_pred HHHHHHHHHHH-HhHHHHhcCCCcEEEEEEeCCEEEEEEecCCcch----HHHHHHHHHHHHHHCCCCcEEEeCC
Confidence 47899999995 999999999 999999999999999999999999 6999999999999999999998763
No 5
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.89 E-value=7.6e-24 Score=166.73 Aligned_cols=71 Identities=38% Similarity=0.706 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCchhhhccCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccceeeC
Q psy1153 123 VQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNM 194 (195)
Q Consensus 123 ~~~i~~~l~~~irP~l~~dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~ 194 (195)
.++|+++|+ +|||+|++|||||+|++|++|+|+|||+|||+|||||++||+++||++|++++|+++.|..+
T Consensus 6 ~e~v~~~L~-~iRP~l~~dGGdvelv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~v 76 (154)
T 2z51_A 6 EENVESVLD-EIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEAL 76 (154)
T ss_dssp HHHHHHHHH-HHHHHHHHTTEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHHHHHHHH-HhChHHHhcCCeEEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEEEc
Confidence 578999998 79999999999999999999999999999999999999999999999999999999999865
No 6
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=7.6e-23 Score=151.59 Aligned_cols=86 Identities=62% Similarity=0.987 Sum_probs=79.5
Q ss_pred CceEEEEecC-----------CcccCCCccccCCCcccccCChHHhhhcccCCeeEEEeecceEEEEe-cCCCCCccchh
Q psy1153 19 GDIQFISFQD-----------GVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTK-QDDDVDWKLLK 86 (195)
Q Consensus 19 g~~~fi~~e~-----------~~~vl~gg~~~f~~~~~a~~~~La~~Lf~i~gV~~V~~~~dfVtVtk-~~~~~~W~~l~ 86 (195)
-.-||||+|+ |+.++++|+.+|++..+|..||||++||+++||++||++.||||||| .+ +.+|+.|+
T Consensus 8 ~~~~~~qtE~TPNPntLKF~p~~~vl~~gs~eF~~~~~a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~-~~dW~~ik 86 (107)
T 2ltm_A 8 HSHMFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENE-ELDWNLLK 86 (107)
Confidence 3458888877 88888877999999999999999999999999999999999999999 74 89999999
Q ss_pred HHHHHHHHHhhhcCCCccc
Q psy1153 87 PEIFATIMDFFSSGLPVLT 105 (195)
Q Consensus 87 ~~i~~~I~d~l~s~~~~~~ 105 (195)
|+|+++|++||.||.|++.
T Consensus 87 p~V~~~I~~~~~sG~pvv~ 105 (107)
T 2ltm_A 87 PDIYATIMDFFASGLPLVT 105 (107)
Confidence 9999999999999999875
No 7
>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.1e-22 Score=150.86 Aligned_cols=88 Identities=24% Similarity=0.393 Sum_probs=80.1
Q ss_pred CCCceEEEEecC------------CcccCCC--c-cccCCCccccc--CChHHhhhc-ccCCeeEEEeecceEEEEecCC
Q psy1153 17 DGGDIQFISFQD------------GVLEEPG--Q-TIDFPTGQAAY--CSPLGKLLF-RIEGVKSVFFGHDFITVTKQDD 78 (195)
Q Consensus 17 d~g~~~fi~~e~------------~~~vl~g--g-~~~f~~~~~a~--~~~La~~Lf-~i~gV~~V~~~~dfVtVtk~~~ 78 (195)
..+|.||||+|+ |+.++++ | +.+|++..++. .+|||++|| +++||++||++.|||||||.+
T Consensus 12 ~~~R~mfIqtE~TPNPntLKF~sp~~~vl~~~~g~t~~f~~~~~a~~~~SPLA~~LF~~i~GV~~Vf~g~DFITVtK~~- 90 (119)
T 2ltl_A 12 NSQRLIHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINKDR- 90 (119)
Confidence 357899999987 5677775 5 89999998888 899999999 999999999999999999996
Q ss_pred CCCccchhHHHHHHHHHhhhcCCCccc
Q psy1153 79 DVDWKLLKPEIFATIMDFFSSGLPVLT 105 (195)
Q Consensus 79 ~~~W~~l~~~i~~~I~d~l~s~~~~~~ 105 (195)
+++|+.|+|+|+++|++||.||.|++.
T Consensus 91 ~~dW~~ikp~I~~~I~e~~~sg~pvv~ 117 (119)
T 2ltl_A 91 MVHWNSIKPEIIDLLTKQLAYGEDVIS 117 (119)
Confidence 999999999999999999999999875
No 8
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=99.79 E-value=9.7e-20 Score=132.17 Aligned_cols=69 Identities=29% Similarity=0.423 Sum_probs=63.3
Q ss_pred CCcccCCCccccCCCcccccCChHHhhhcccCCeeEEEeecceEEEEecCCCCCccchhHHHHHHHHHhhh
Q psy1153 28 DGVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMDFFS 98 (195)
Q Consensus 28 ~~~~vl~gg~~~f~~~~~a~~~~La~~Lf~i~gV~~V~~~~dfVtVtk~~~~~~W~~l~~~i~~~I~d~l~ 98 (195)
.|+.+.+|++.+|++.+ |..||||++||+++||++||+++|||||||.+ +++|++|+|+|+++|++|+-
T Consensus 19 ~~~~l~~g~s~~f~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~-~~dW~~ikp~I~~~I~~~~~ 87 (94)
T 2k1h_A 19 LSEPRQDNSFTTYTAAQ-EGQPEFINRLFEIEGVKSIFYVLDFISIDKED-NANWNELLPQIENTFAKSNL 87 (94)
T ss_dssp CCCCCTTCCCCEECCCC-TTSCHHHHHHHTSTTEEEEEEETTEEEEEECT-TCCHHHHHHHHHHHHHHHC-
T ss_pred CCCCcCCCCceecCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHH
Confidence 47775567799999998 99999999999999999999999999999996 99999999999999999985
No 9
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=99.75 E-value=6.2e-19 Score=127.23 Aligned_cols=66 Identities=24% Similarity=0.361 Sum_probs=60.5
Q ss_pred CCcccCCCccccCCCcccccCChHHhhhcccCCeeEEEeecceEEEEecCCCCCccchhHHHHHHHHH
Q psy1153 28 DGVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMD 95 (195)
Q Consensus 28 ~~~~vl~gg~~~f~~~~~a~~~~La~~Lf~i~gV~~V~~~~dfVtVtk~~~~~~W~~l~~~i~~~I~d 95 (195)
.|+.+.+|++.+|++.+ +..||||++||+++||++||++.|||||||.+ +++|++|+|+|+++|++
T Consensus 19 ~~~~l~~g~s~~F~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~-~~dW~~ikp~V~~~I~~ 84 (91)
T 1pqx_A 19 LSESREGMTSDTYTKVD-DSQPAFINDILKVEGVKSIFHVMDFISVDKEN-DANWETVLPKVEAVFEL 84 (91)
T ss_dssp CSCCSSCCCCEEESSSC-SSCCHHHHHHHHSTTEEEEEEETTEEEEEECT-TSCSTTTHHHHHHHTCS
T ss_pred CCcCcCCCCceEeCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHH
Confidence 47775557799999998 99999999999999999999999999999996 99999999999998865
No 10
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=99.15 E-value=1.9e-12 Score=93.35 Aligned_cols=68 Identities=44% Similarity=0.633 Sum_probs=61.8
Q ss_pred CHHHHHhhccCCccccCCCceEEEEecCCcccCC--CccccCCCcccccCChHHhhhc-ccCCeeEEEeec
Q psy1153 1 MIKELLDTRIRPTVQEDGGDIQFISFQDGVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVFFGH 68 (195)
Q Consensus 1 ~~~~~l~~~irp~~~~d~g~~~fi~~e~~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~~~~ 68 (195)
+|+++|+++|||+|+.||||++|+.+++|..+|. |+|.+|+++..|.+..+.++|. .+|+|+.|.-..
T Consensus 17 ~I~~~L~~~IRP~L~~dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~v~ 87 (92)
T 1veh_A 17 MIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVS 87 (92)
T ss_dssp HHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEECS
T ss_pred HHHHHHHHHhhHHHHhcCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEEcC
Confidence 4789999999999999999999999998877776 8899999999999999999999 699999987653
No 11
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=99.14 E-value=4e-12 Score=90.98 Aligned_cols=66 Identities=23% Similarity=0.450 Sum_probs=60.3
Q ss_pred HHHHHhhccCCccccCCCceEEEEecCCcccCC--CccccCCCcccccCChHHhhhc-ccCCeeEEEeec
Q psy1153 2 IKELLDTRIRPTVQEDGGDIQFISFQDGVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVFFGH 68 (195)
Q Consensus 2 ~~~~l~~~irp~~~~d~g~~~fi~~e~~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~~~~ 68 (195)
|+++|+. |||+|+.||||++|+.+++|..++. |+|.+|+++..|.+..+.++|. .+|+|+.|....
T Consensus 12 I~~~L~~-IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v~ 80 (88)
T 1xhj_A 12 VAEVIER-LRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVF 80 (88)
T ss_dssp HHHHHHH-HHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred HHHHHHH-hcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEecc
Confidence 7899995 9999999999999999998887776 9999999999999999999999 699999987654
No 12
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=98.77 E-value=8.5e-10 Score=76.41 Aligned_cols=60 Identities=22% Similarity=0.421 Sum_probs=52.3
Q ss_pred HHHHHhhccCCccccCC-CceEEEEecCCcccCC--CccccCCCcccccCChHHhhhc-ccCCeeEEEe
Q psy1153 2 IKELLDTRIRPTVQEDG-GDIQFISFQDGVLEEP--GQTIDFPTGQAAYCSPLGKLLF-RIEGVKSVFF 66 (195)
Q Consensus 2 ~~~~l~~~irp~~~~d~-g~~~fi~~e~~~~vl~--gg~~~f~~~~~a~~~~La~~Lf-~i~gV~~V~~ 66 (195)
|+++|+ +|||+|+.|| ||++|+.+++|..++. |+|.+| .|.+..+.++|. .+|+|+.|..
T Consensus 9 V~~~L~-~iRP~L~~dGGGdvelv~v~~g~V~v~l~GaC~gc----~Tlk~gIe~~L~~~vpei~~V~~ 72 (74)
T 1th5_A 9 VEKVLN-EIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVV----RTVRIAVSKKLREKIPSIQIVQL 72 (74)
T ss_dssp HHHHHT-TTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSS----SSHHHHHHHHHHHHCTTCSEEEE
T ss_pred HHHHHH-HHhHHHHhcCCCcEEEEEEeCCEEEEEEecCCcch----HHHHHHHHHHHHHHCCCCcEEEe
Confidence 789998 5999999999 9999999998877776 878877 578888999999 6999999864
No 13
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=98.16 E-value=8.9e-06 Score=59.01 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCchhhhccC---CcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153 121 ETVQMIKELLDTRIRPTVQEDG---GDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGL 192 (195)
Q Consensus 121 ~~~~~i~~~l~~~irP~l~~dG---G~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~ 192 (195)
...++|.++|.+.+.|.+..+- |-|+-+.+++|.|+|.|...+.+||.. .+++..|+++|++ +|++.+|.
T Consensus 6 ~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~~-~~l~~~i~~al~~-l~gv~~V~ 78 (103)
T 3cq1_A 6 PLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLH-DSLGEAVRQALSR-LPGVEEVE 78 (103)
T ss_dssp HHHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCSS-CHHHHHHHHHHHT-STTCCEEE
T ss_pred hHHHHHHHHHhCCCCCCCCcCchhcCceEEEEEECCEEEEEEEECCCCCcHH-HHHHHHHHHHHHh-CCCceeEE
Confidence 3567899999999999999866 899999999999999999999999985 7888999999974 89988764
No 14
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=97.78 E-value=6.2e-05 Score=55.04 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHhcCchhhhc---cCCcEEEEEEeC-CEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153 119 DDETVQMIKELLDTRIRPTVQE---DGGDIQFISFQG-GVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGL 192 (195)
Q Consensus 119 ~~~~~~~i~~~l~~~irP~l~~---dGG~ie~v~~~~-g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~ 192 (195)
.+...++|.++|.+.+.|.+.. +-|-|+=+.+++ |.|+|.|.-...+||.. ..++..|+++|+..+|++++|.
T Consensus 6 ~~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~-~~i~~~i~~al~~~l~Gv~~V~ 82 (108)
T 3lno_A 6 QEAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMA-GQIVSDVKKVLSTNVPEVNEIE 82 (108)
T ss_dssp HHHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTH-HHHHHHHHHHHHHHCTTCCCEE
T ss_pred hhhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECCCCCcHH-HHHHHHHHHHHHHhCCCCceEE
Confidence 3456788999999999999986 478999999985 99999999999999987 6889999999966699998875
No 15
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=97.59 E-value=0.00019 Score=51.80 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCchhhhccC---CcEEEEEEeC-CEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153 123 VQMIKELLDTRIRPTVQEDG---GDIQFISFQG-GVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGL 192 (195)
Q Consensus 123 ~~~i~~~l~~~irP~l~~dG---G~ie~v~~~~-g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~ 192 (195)
.++|.++|.+.+-|.+..+- |-|+=+.+++ |.|+|.|.-.+.+||.. ..++..|+++|++ +|++.+|.
T Consensus 8 ~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~~-~~l~~~i~~al~~-l~gv~~v~ 79 (103)
T 1uwd_A 8 KEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLA-GMILSDAEEAIKK-IEGVNNVE 79 (103)
T ss_dssp HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSH-HHHHHHHHHHHHT-SSSCCEEE
T ss_pred HHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCCCEEEEEEEECCCCCcHH-HHHHHHHHHHHHh-CCCcceEE
Confidence 56899999988889998754 8888888985 89999999999999985 8889999999975 89888764
No 16
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=89.97 E-value=0.18 Score=38.01 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCchhhhc---cCCcEEEEEE-------eCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153 123 VQMIKELLDTRIRPTVQE---DGGDIQFISF-------QGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGL 192 (195)
Q Consensus 123 ~~~i~~~l~~~irP~l~~---dGG~ie~v~~-------~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~ 192 (195)
.+.|-++|.+-..|.+.. +-|-|.-+.+ +++.|.|.|+-.=+|||++ ..+...|+.+|++.+|...+|.
T Consensus 10 ~~eI~d~L~~I~DPEiPvtl~dLGvV~~v~I~v~~~~~~~~~V~V~~TPT~p~Cp~a-~~I~l~Ir~kL~~~lp~~~kV~ 88 (130)
T 3ux2_A 10 ALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLA-TLIGLCLRVKLQRCLPFKHKLE 88 (130)
T ss_dssp HHHHHHHHTTCBCSSSSSBTTTTTSCCGGGEEEEEEETTEEEEEECCCCCCCSSCHH-HHHHHHHHHHHHHHCSSCCCCC
T ss_pred HHHHHHHHhcCCCCCCCCCHHHCCeeeecceEeecccCCCCeEEEEEEeCCCCCCch-HHHHHHHHHHHHHhCCCceEEE
Confidence 445666676666666653 4444433322 2467999999999999999 4555799999999888765543
No 17
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=76.26 E-value=4.4 Score=28.39 Aligned_cols=73 Identities=22% Similarity=0.198 Sum_probs=47.4
Q ss_pred HHHHHhhccCCccccCC---CceEEEEecCCcccCC--CccccCCCcccccCChHHhhhcccCCeeEEEeecceEEEEec
Q psy1153 2 IKELLDTRIRPTVQEDG---GDIQFISFQDGVLEEP--GQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQ 76 (195)
Q Consensus 2 ~~~~l~~~irp~~~~d~---g~~~fi~~e~~~~vl~--gg~~~f~~~~~a~~~~La~~Lf~i~gV~~V~~~~dfVtVtk~ 76 (195)
|.+.|++-+.|.+..+- |-+.-|.+++|...+. -.+..|+- ......-+.+.|.+++||.+|.+ .++-.
T Consensus 11 V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~-~~~l~~~i~~al~~l~gv~~V~V-----~l~~~ 84 (103)
T 3cq1_A 11 AWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPL-HDSLGEAVRQALSRLPGVEEVEV-----EVTFE 84 (103)
T ss_dssp HHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCS-SCHHHHHHHHHHHTSTTCCEEEE-----EECCS
T ss_pred HHHHHhCCCCCCCCcCchhcCceEEEEEECCEEEEEEEECCCCCcH-HHHHHHHHHHHHHhCCCceeEEE-----EEecC
Confidence 56788877889987655 7888888877643332 22334443 33455566777777899999874 35555
Q ss_pred CCCCCcc
Q psy1153 77 DDDVDWK 83 (195)
Q Consensus 77 ~~~~~W~ 83 (195)
+ .|.
T Consensus 85 p---~W~ 88 (103)
T 3cq1_A 85 P---PWT 88 (103)
T ss_dssp S---CCC
T ss_pred C---CCC
Confidence 4 674
No 18
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=67.94 E-value=3.9 Score=29.58 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=19.6
Q ss_pred CCCCcchHHHHHHHHHHHHHhhCCCc
Q psy1153 163 CTSCPSSVVTLKNGVQNMLQFYIPET 188 (195)
Q Consensus 163 C~gCp~s~~tl~~~Ie~~l~~~~pev 188 (195)
|.+=|||..|. ++++.+|++++|+.
T Consensus 22 CVnaPSSkeTy-EWLqAal~RKyp~~ 46 (111)
T 1xg8_A 22 CVNAPTSKDIY-DWLQPLLKRKYPNI 46 (111)
T ss_dssp GSSSCCHHHHH-HHHHHHHHHHCTTS
T ss_pred ccCCCCchhHH-HHHHHHHhCcCCCC
Confidence 44447776776 69999999999974
No 19
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp}
Probab=51.14 E-value=13 Score=32.76 Aligned_cols=63 Identities=17% Similarity=0.379 Sum_probs=39.0
Q ss_pred ccCCccccCCCceEEEEecCCcccCCCccccCCCcccccCChHHhhhcccCCeeEEEeecceEEEEec
Q psy1153 9 RIRPTVQEDGGDIQFISFQDGVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQ 76 (195)
Q Consensus 9 ~irp~~~~d~g~~~fi~~e~~~~vl~gg~~~f~~~~~a~~~~La~~Lf~i~gV~~V~~~~dfVtVtk~ 76 (195)
..|-.--.-||-++.+-. | +|.|--++---++-+.+.||.+||.||.||+|.|+.+|=.....
T Consensus 214 ~ak~~gDS~GGvve~v~~--g---vP~GLG~pvf~d~kLda~LA~A~mSI~AvKGvEiG~GF~~a~~~ 276 (398)
T 4ecd_A 214 EAKKAADTLGGVIEVLAY--G---VPAGIGTYVESDRRLDAALASAIMGIQAFKGVEIGDGFLAASRP 276 (398)
T ss_dssp TC--CGGGCCEEEEEEEE--S---CCSCCBCSSSSTTSHHHHHHHHHHTSTTEEEEEETTTTTC----
T ss_pred HHHHhCCCCceEEEEEEE--c---CCCCCCCCcccccChhHHHHHHhcCcCceeeEEecchHhhhhcc
Confidence 455555556777777655 2 34332232222345667899999999999999999999666555
No 20
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=46.82 E-value=33 Score=23.63 Aligned_cols=81 Identities=22% Similarity=0.239 Sum_probs=47.0
Q ss_pred HHHHHhhccCCccccC---CCceEEEEecC-CcccC--CCccccCCCcccccCChHHhhhcccCCeeEEEeecceEEEEe
Q psy1153 2 IKELLDTRIRPTVQED---GGDIQFISFQD-GVLEE--PGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTK 75 (195)
Q Consensus 2 ~~~~l~~~irp~~~~d---~g~~~fi~~e~-~~~vl--~gg~~~f~~~~~a~~~~La~~Lf~i~gV~~V~~~~dfVtVtk 75 (195)
|.+.|++-+-|.+..+ -|-+.-|.+++ |...+ .-.+..|+- ......-+.+.|.+++||.+|. |.++-
T Consensus 11 V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~-~~~l~~~i~~al~~l~gv~~v~-----V~l~~ 84 (103)
T 1uwd_A 11 VLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPL-AGMILSDAEEAIKKIEGVNNVE-----VELTF 84 (103)
T ss_dssp HHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSS-HHHHHHHHHHHHHTSSSCCEEE-----EEECC
T ss_pred HHHHHcCCCCCCCCcChhhcCCeeEEEEcCCCEEEEEEEECCCCCcH-HHHHHHHHHHHHHhCCCcceEE-----EEEec
Confidence 4567775666887553 36666667764 53322 222334443 3455556777777889999887 34555
Q ss_pred cCCCCCcc--chhHHHHH
Q psy1153 76 QDDDVDWK--LLKPEIFA 91 (195)
Q Consensus 76 ~~~~~~W~--~l~~~i~~ 91 (195)
++ .|. .+-++-|.
T Consensus 85 ~p---~W~~~~~s~~~r~ 99 (103)
T 1uwd_A 85 DP---PWTPERMSPELRE 99 (103)
T ss_dssp SS---CCCGGGSCHHHHH
T ss_pred CC---CCChHHCCHHHHH
Confidence 54 664 35555544
No 21
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=44.55 E-value=15 Score=23.03 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=20.0
Q ss_pred EEEEEEcc-cCCCCcchHHHHHHHHHHHHHhhCCCcccee
Q psy1153 154 VVKLKMQG-SCTSCPSSVVTLKNGVQNMLQFYIPETTPGL 192 (195)
Q Consensus 154 ~v~v~l~G-aC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~ 192 (195)
...++..| .|.+|.. .|++.|+. |+|..|.
T Consensus 6 ~~~~~v~gm~C~~C~~-------~ie~~l~~--~gv~~~~ 36 (73)
T 3fry_A 6 KIVLELSGLSCHHCVA-------RVKKALEE--AGAKVEK 36 (73)
T ss_dssp EEEEEEESSBCGGGHH-------HHHHHHHH--TTCEEEE
T ss_pred EEEEEECCCCCHHHHH-------HHHHHhcc--CCcEEEE
Confidence 35667777 5777753 56777777 7776553
No 22
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=39.94 E-value=12 Score=19.78 Aligned_cols=11 Identities=45% Similarity=0.788 Sum_probs=8.5
Q ss_pred CcchHHHHHHH
Q psy1153 166 CPSSVVTLKNG 176 (195)
Q Consensus 166 Cp~s~~tl~~~ 176 (195)
||+|..+|++.
T Consensus 1 cpss~~sL~Ek 11 (26)
T 3bej_E 1 CPSSHSSLTER 11 (26)
T ss_pred CCCchhhHHHH
Confidence 89998888643
No 23
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=39.87 E-value=13 Score=32.75 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=25.1
Q ss_pred cccCChHHhhhcccCCeeEEEeecceEEEE
Q psy1153 45 AAYCSPLGKLLFRIEGVKSVFFGHDFITVT 74 (195)
Q Consensus 45 ~a~~~~La~~Lf~i~gV~~V~~~~dfVtVt 74 (195)
+-+.+.||..||.||.||+|.|+.+|=...
T Consensus 237 ~kLda~LA~AlmSI~AvKGvEiG~GF~~a~ 266 (388)
T 1qxo_A 237 RKLDARLAQAVVSINAFKGVEFGLGFEAGY 266 (388)
T ss_dssp GCHHHHHHHHHHTSTTEEEEEETTGGGGGG
T ss_pred ccchHHHHHHhcCcCceeEEEECcchhhhh
Confidence 456678999999999999999999884433
No 24
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=39.23 E-value=92 Score=21.40 Aligned_cols=62 Identities=8% Similarity=-0.056 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCchhhhccCCcEEEEEEe----CCEEEEEEcccCCC-Cc-chHHHHHHHHHHHHHhhCCCccce
Q psy1153 122 TVQMIKELLDTRIRPTVQEDGGDIQFISFQ----GGVVKLKMQGSCTS-CP-SSVVTLKNGVQNMLQFYIPETTPG 191 (195)
Q Consensus 122 ~~~~i~~~l~~~irP~l~~dGG~ie~v~~~----~g~v~v~l~GaC~g-Cp-~s~~tl~~~Ie~~l~~~~pev~~V 191 (195)
..++|+++|. +..|-..+.++. ++.+++.+.-...+ .+ ...-.+...|+..|++.+|.+..|
T Consensus 11 ~~~~I~~~l~--------~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~v 78 (107)
T 2zzt_A 11 MYDDIFAVLE--------RFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDV 78 (107)
T ss_dssp HHHHHHHHHT--------TCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHH--------cCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEE
Confidence 6777777776 233333444442 33333333222222 12 123467789999999999987654
No 25
>3hdu_A Putative thioesterase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 2.50A {Syntrophus aciditrophicus SB}
Probab=38.24 E-value=1.1e+02 Score=22.14 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHHhcCchhhhccCCcEEEEEEeCCEEEEEEcccCCCCcc-hHHHHHHHHHHHH
Q psy1153 119 DDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPS-SVVTLKNGVQNML 181 (195)
Q Consensus 119 ~~~~~~~i~~~l~~~irP~l~~dGG~ie~v~~~~g~v~v~l~GaC~gCp~-s~~tl~~~Ie~~l 181 (195)
++++.+++++.+. .-.|+.+.-| +++..+++|.+.++|.-.=.-|.- ...+++-|+-..|
T Consensus 9 ~~~~~~~l~~~~~-~~~p~~~~lG--~~~~~~~~g~~~~~~~~~~~~~~Np~~G~~HGG~iatl 69 (157)
T 3hdu_A 9 EEVLFSAVNEIFE-EKIPFNKIIG--LKVRFISPEQVKLSFEMRDELIGNAIRRMLYGGVISSA 69 (157)
T ss_dssp HHHHHHHHHHHHH-TSCGGGGTEE--EEEEEECSSEEEEEEEESSCCTTCTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhh-cCCcHHHhcC--CEEEEecCCEEEEEEECCHHHhCCCCCCeEcHHHHHHH
Confidence 5678889999888 5678887775 889999999988888765445421 2345555554444
No 26
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1
Probab=37.32 E-value=21 Score=31.44 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=36.9
Q ss_pred cCCccccCCCceEEEEecCCcccCCCccccCCCcccccCChHHhhhcccCCeeEEEeecceEEEE
Q psy1153 10 IRPTVQEDGGDIQFISFQDGVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVT 74 (195)
Q Consensus 10 irp~~~~d~g~~~fi~~e~~~~vl~gg~~~f~~~~~a~~~~La~~Lf~i~gV~~V~~~~dfVtVt 74 (195)
.|-.--.-||-++.+-. | +|.|--++...+.-+.+.||..||.||.||+|.|+.+|=...
T Consensus 220 ak~~GDS~GGvvevv~~--g---vP~GLG~pv~fdkrLda~LA~AlmSI~AvKGvEiG~GF~~a~ 279 (401)
T 1q1l_A 220 VKEKGESLGGVFEVFAL--N---VPPGLGSHIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAAR 279 (401)
T ss_dssp HHTTTCCBCEEEEEEEE--S---CCTTCSCSSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGG
T ss_pred HHHhCCCCceEEEEEEe--c---CCCCCCCcccccccchHHHHHHhcCcCceeEEEECcchhhhh
Confidence 33334445666666644 2 342322221223235668999999999999999999884443
No 27
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Probab=33.72 E-value=15 Score=32.42 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=24.5
Q ss_pred cccCChHHhhhcccCCeeEEEeecceEEE
Q psy1153 45 AAYCSPLGKLLFRIEGVKSVFFGHDFITV 73 (195)
Q Consensus 45 ~a~~~~La~~Lf~i~gV~~V~~~~dfVtV 73 (195)
+-+.+.||..||.||.||+|.|+.+|=..
T Consensus 242 ~kLda~LA~AlmSI~AvKGvEiG~GF~~a 270 (407)
T 2o11_A 242 HRLDSQLAAAVMGIQAIKGVEIGDGFQTA 270 (407)
T ss_dssp GSHHHHHHHHHHTSTTEEEEEETTHHHHT
T ss_pred cchhHHHHHHhcCcCceeeEEeccchhhh
Confidence 45667899999999999999999988443
No 28
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=32.90 E-value=43 Score=21.11 Aligned_cols=30 Identities=27% Similarity=0.592 Sum_probs=19.1
Q ss_pred EEEEEEcc-cCCCCcchHHHHHHHHHHHHHhhCCCccce
Q psy1153 154 VVKLKMQG-SCTSCPSSVVTLKNGVQNMLQFYIPETTPG 191 (195)
Q Consensus 154 ~v~v~l~G-aC~gCp~s~~tl~~~Ie~~l~~~~pev~~V 191 (195)
.+.+++.| .|.+|... |+..|+. +|+|..|
T Consensus 10 ~~~~~v~gm~C~~C~~~-------ie~~l~~-~~GV~~~ 40 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTST-------IEGKIGK-LQGVQRI 40 (84)
T ss_dssp EEEEEECCTTTCSSCHH-------HHHHHHT-CTTEEEE
T ss_pred EEEEEECCcccHHHHHH-------HHHHHHc-CCCeEEE
Confidence 45567766 68888644 5666665 6666544
No 29
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=32.52 E-value=62 Score=22.54 Aligned_cols=85 Identities=13% Similarity=0.104 Sum_probs=47.6
Q ss_pred HHHHHhhccCCcccc---CCCceEEEEecC-CcccCC--CccccCCCcccccCChHHhhh-cccCCeeEEEeecceEEEE
Q psy1153 2 IKELLDTRIRPTVQE---DGGDIQFISFQD-GVLEEP--GQTIDFPTGQAAYCSPLGKLL-FRIEGVKSVFFGHDFITVT 74 (195)
Q Consensus 2 ~~~~l~~~irp~~~~---d~g~~~fi~~e~-~~~vl~--gg~~~f~~~~~a~~~~La~~L-f~i~gV~~V~~~~dfVtVt 74 (195)
|.+.|.+-+-|.+.. +-|-+.-|.+++ |...+. -.+..|+. ......-+.++| .+++||++|. |.++
T Consensus 13 V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~-~~~i~~~i~~al~~~l~Gv~~V~-----V~l~ 86 (108)
T 3lno_A 13 LYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPM-AGQIVSDVKKVLSTNVPEVNEIE-----VNVV 86 (108)
T ss_dssp HHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTT-HHHHHHHHHHHHHHHCTTCCCEE-----EEEC
T ss_pred HHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECCCCCcH-HHHHHHHHHHHHHHhCCCCceEE-----EEEE
Confidence 456666666777644 356666777764 543332 22333443 234455677777 6889998887 5555
Q ss_pred ecCCCCCccchhHHHHHHH
Q psy1153 75 KQDDDVDWKLLKPEIFATI 93 (195)
Q Consensus 75 k~~~~~~W~~l~~~i~~~I 93 (195)
-+| .=+.+.+-++-|..|
T Consensus 87 ~~p-~W~~~~~s~~~r~~l 104 (108)
T 3lno_A 87 WNP-PWSKERMSRMAKIAL 104 (108)
T ss_dssp CSS-CCCGGGSCHHHHHHH
T ss_pred ecC-CCChHHCCHHHHHHc
Confidence 554 222334555555443
No 30
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A
Probab=28.99 E-value=23 Score=30.84 Aligned_cols=58 Identities=16% Similarity=0.044 Sum_probs=35.8
Q ss_pred cccCCCceEEEEecC-CcccCCCccccCCCcccccCChHHhhhcccCCeeEEEeecceEEE
Q psy1153 14 VQEDGGDIQFISFQD-GVLEEPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITV 73 (195)
Q Consensus 14 ~~~d~g~~~fi~~e~-~~~vl~gg~~~f~~~~~a~~~~La~~Lf~i~gV~~V~~~~dfVtV 73 (195)
--.-||-++.+-.-. ....+|.|--++- -+-+.+.||..||.|+.||+|.|+..|=..
T Consensus 197 gDSiGGvve~v~~g~~~~~~vP~GLG~pv--fdkLda~LA~A~msI~AvKGvEiG~GF~~a 255 (365)
T 1um0_A 197 HDSIGGVALIRARSIKTNQKLPIGLGQGL--YAKLDAKIAEAMMGLNGVKAVEIGKGVESS 255 (365)
T ss_dssp TCCBCEEEEEEEEESSTTCCCCSCCSBTT--TBCHHHHHHHHHHTSTTEEEEEETTGGGGG
T ss_pred CCCCeEEEEEEEEcccccCcCCCCCCCcc--cccchHHHHHHhcCccceeeEEeccchhhh
Confidence 334566666665521 1222452322211 245667899999999999999999988443
No 31
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=28.81 E-value=23 Score=30.88 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=24.9
Q ss_pred cccCChHHhhhcccCCeeEEEeecceEEEE
Q psy1153 45 AAYCSPLGKLLFRIEGVKSVFFGHDFITVT 74 (195)
Q Consensus 45 ~a~~~~La~~Lf~i~gV~~V~~~~dfVtVt 74 (195)
+-+.+.||.+||.||.||+|.|+..|=...
T Consensus 224 dkLda~LA~AlmSI~AvKGvEiG~GF~~a~ 253 (370)
T 1sq1_A 224 DKLDSKLAHALMGINAVKAVEIGEGINASK 253 (370)
T ss_dssp BCHHHHHHHHHHTSTTEEEEEETTGGGGGG
T ss_pred ccchHHHHHHhcCccceeEEEeccchhhhh
Confidence 355678999999999999999999984433
No 32
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=28.32 E-value=19 Score=26.77 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=33.1
Q ss_pred ccCCcEEEEEEeCCEEEEEE-cccCC-CCcchHHHHHHHHHHHHHhhCCCc
Q psy1153 140 EDGGDIQFISFQGGVVKLKM-QGSCT-SCPSSVVTLKNGVQNMLQFYIPET 188 (195)
Q Consensus 140 ~dGG~ie~v~~~~g~v~v~l-~GaC~-gCp~s~~tl~~~Ie~~l~~~~pev 188 (195)
.+|-.+.+-++++..|.|-+ .-.|. -||.....|. .+.+.+++.-.+|
T Consensus 20 ~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~-~l~~~~~~~~~~v 69 (170)
T 4hde_A 20 QDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMA-KLQKMAKEEKLDV 69 (170)
T ss_dssp TTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHH-HHHHHHHHTTCCC
T ss_pred CCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHH-HHHHhhhcccccc
Confidence 46666777777777777777 45786 4998877886 4666777654444
No 33
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=27.39 E-value=20 Score=24.00 Aligned_cols=10 Identities=60% Similarity=1.414 Sum_probs=6.9
Q ss_pred cccCCCCcch
Q psy1153 160 QGSCTSCPSS 169 (195)
Q Consensus 160 ~GaC~gCp~s 169 (195)
+|+|.+||.+
T Consensus 58 ~g~C~~C~~~ 67 (78)
T 1xn7_A 58 SGSCKSCPEG 67 (78)
T ss_dssp CSSCCCCCCC
T ss_pred CCCCCCCCCC
Confidence 4567778875
No 34
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=27.33 E-value=16 Score=24.32 Aligned_cols=16 Identities=31% Similarity=0.769 Sum_probs=11.4
Q ss_pred cCCCCcch-HHHHHHHH
Q psy1153 162 SCTSCPSS-VVTLKNGV 177 (195)
Q Consensus 162 aC~gCp~s-~~tl~~~I 177 (195)
.|.|||+| ..||.++.
T Consensus 29 ~C~gC~~a~~~tLeeA~ 45 (76)
T 2k53_A 29 HCLGCPSSMGESIEDAC 45 (76)
T ss_dssp CCCSSCCCCCSBHHHHH
T ss_pred CCCCCCccccccHHHHH
Confidence 39999976 46776553
No 35
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=27.07 E-value=1.1e+02 Score=18.50 Aligned_cols=30 Identities=17% Similarity=0.388 Sum_probs=18.3
Q ss_pred EEEEEEcc-cCCCCcchHHHHHHHHHHHHHhhCCCccce
Q psy1153 154 VVKLKMQG-SCTSCPSSVVTLKNGVQNMLQFYIPETTPG 191 (195)
Q Consensus 154 ~v~v~l~G-aC~gCp~s~~tl~~~Ie~~l~~~~pev~~V 191 (195)
.+.++..| .|.+|.. .|++.|+. +|.|..+
T Consensus 9 ~~~~~v~gm~C~~C~~-------~i~~~l~~-~~gv~~~ 39 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVW-------TIEQQIGK-VNGVHHI 39 (79)
T ss_dssp EEEEEECCCCSTTTHH-------HHHHHHHH-SSSCCCE
T ss_pred EEEEEECCccCHHHHH-------HHHHHHhc-CCCeEEE
Confidence 45566666 5777753 36666665 6666554
No 36
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=23.67 E-value=65 Score=19.28 Aligned_cols=29 Identities=21% Similarity=0.493 Sum_probs=17.0
Q ss_pred EEEEEcc-cCCCCcchHHHHHHHHHHHHHhhCCCccce
Q psy1153 155 VKLKMQG-SCTSCPSSVVTLKNGVQNMLQFYIPETTPG 191 (195)
Q Consensus 155 v~v~l~G-aC~gCp~s~~tl~~~Ie~~l~~~~pev~~V 191 (195)
+.+++.| .|.+|. ..|++.|+. +|.|..+
T Consensus 5 ~~~~v~gm~C~~C~-------~~ie~~l~~-~~gV~~~ 34 (73)
T 1mwy_A 5 YSWKVSGMDCAACA-------RKVENAVRQ-LAGVNQV 34 (73)
T ss_dssp EEEEEESCCSTTHH-------HHHHHHHHT-SSSEEEE
T ss_pred EEEEECCcCCHHHH-------HHHHHHHhc-CCCeeEE
Confidence 4556665 366664 246666665 6766554
No 37
>3e1e_A Thioesterase family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Silicibacter pomeroyi}
Probab=23.53 E-value=96 Score=21.81 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHHhcCchhhhccCCcEEEEEEeCCEEEEEEc
Q psy1153 119 DDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQ 160 (195)
Q Consensus 119 ~~~~~~~i~~~l~~~irP~l~~dGG~ie~v~~~~g~v~v~l~ 160 (195)
+.++.+++++.++. .|+.+..| +++..+++|.+.+++.
T Consensus 4 ~pe~~~~l~~~~~~--~p~~~~lg--~~~~~~~~g~~~~~~~ 41 (141)
T 3e1e_A 4 FAGYAQKVRDSFAR--QPVMATLG--ARIDTLLPGRVELCMP 41 (141)
T ss_dssp --CHHHHHHHHHHT--CHHHHHHT--CEEEEEETTEEEEEEE
T ss_pred ChHHHHHHHHHhcc--ChHHHhcC--cEEEEEeCCEEEEEEE
Confidence 45678889988883 38877775 7788899998877774
No 38
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=23.12 E-value=24 Score=24.19 Aligned_cols=11 Identities=55% Similarity=1.235 Sum_probs=8.4
Q ss_pred cccCCCCcchH
Q psy1153 160 QGSCTSCPSSV 170 (195)
Q Consensus 160 ~GaC~gCp~s~ 170 (195)
+|+|.+||.+.
T Consensus 58 sgsC~sC~~~~ 68 (87)
T 2k02_A 58 SGSCKSCPEGK 68 (87)
T ss_dssp SSSSSSCSSCC
T ss_pred CCCCCCCCCcc
Confidence 47899998863
No 39
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=23.04 E-value=1e+02 Score=21.64 Aligned_cols=40 Identities=30% Similarity=0.422 Sum_probs=29.2
Q ss_pred hHHhhhcccCCeeEEEee-------cceEEEEecCCCCCccchhHHH
Q psy1153 50 PLGKLLFRIEGVKSVFFG-------HDFITVTKQDDDVDWKLLKPEI 89 (195)
Q Consensus 50 ~La~~Lf~i~gV~~V~~~-------~dfVtVtk~~~~~~W~~l~~~i 89 (195)
-||..|-+++||.+|.+. .--+.||-..++-++++++..|
T Consensus 23 d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~I 69 (97)
T 2raq_A 23 EYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAI 69 (97)
T ss_dssp HHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHH
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHH
Confidence 588899899999999987 3345666665578886655555
No 40
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=22.91 E-value=1.1e+02 Score=24.66 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCchhhhccCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccceeeC
Q psy1153 123 VQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPETTPGLNM 194 (195)
Q Consensus 123 ~~~i~~~l~~~irP~l~~dGG~ie~v~~~~g~v~v~l~GaC~gCp~s~~tl~~~Ie~~l~~~~pev~~V~~~ 194 (195)
.+.|+.++..+.. .+ + ++ -+.+++++++|.+...+..= ..-+..|..|.+.|.++++++++|.-+
T Consensus 153 ~eei~~~~~~~~~-~~--~--~~-~~~~~~~~~~i~~p~~~~~~-~~~~~~k~~~~~~i~~~~~~~~~v~~~ 217 (231)
T 3prb_A 153 KNIVKEIVKMYVP-RL--S--DV-KVTIRNGTVKIELPEFAPFI-PNIQTAKMAIANEILKRLEDAEKVSFV 217 (231)
T ss_dssp HHHHHHHHHHHCT-TC--C--CC-EEEEETTEEEEECCTTGGGS-TTHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHHhcC-Cc--c--ce-EEEEeCCeEEEEcCHHHhhh-hHHHHHHHHHHHHHHHhccccceEEEE
Confidence 5566666663332 11 1 22 36778999999998766542 345778889999999999999988644
No 41
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Probab=22.15 E-value=22 Score=31.09 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=24.4
Q ss_pred cccCChHHhhhcccCCeeEEEeecceEEE
Q psy1153 45 AAYCSPLGKLLFRIEGVKSVFFGHDFITV 73 (195)
Q Consensus 45 ~a~~~~La~~Lf~i~gV~~V~~~~dfVtV 73 (195)
+-+.+.||.+||.||.||+|.|+.+|=..
T Consensus 236 dkLda~LA~A~mSI~AvKGvEiG~GF~~a 264 (382)
T 1r53_A 236 DKLEAMLAHAMLSIPASKGFEIGSGFQGV 264 (382)
T ss_dssp BCHHHHHHHHHHTSTTBCCCEETTTTGGG
T ss_pred ccchHHHHHHhcCccceeEEEeccchhhh
Confidence 45667899999999999999999988433
No 42
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=20.83 E-value=1.1e+02 Score=21.43 Aligned_cols=40 Identities=10% Similarity=0.256 Sum_probs=28.1
Q ss_pred hHHhhhcccCCeeEEEee-------cceEEEEecCCCCCccchhHHH
Q psy1153 50 PLGKLLFRIEGVKSVFFG-------HDFITVTKQDDDVDWKLLKPEI 89 (195)
Q Consensus 50 ~La~~Lf~i~gV~~V~~~-------~dfVtVtk~~~~~~W~~l~~~i 89 (195)
-||+.|-+++||.+|.+. .--+.||-..++-++++++..|
T Consensus 22 d~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~I 68 (96)
T 2x3d_A 22 DLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKML 68 (96)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHH
Confidence 488999899999999987 2334555554468886555554
No 43
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=20.42 E-value=28 Score=25.10 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=23.8
Q ss_pred EEEcccCCCCcchH-HHHHHHHHHHHHhhCC
Q psy1153 157 LKMQGSCTSCPSSV-VTLKNGVQNMLQFYIP 186 (195)
Q Consensus 157 v~l~GaC~gCp~s~-~tl~~~Ie~~l~~~~p 186 (195)
=||+|+|+.|+... ..+-..+|+.+|..-|
T Consensus 66 HkLkGaa~~~Ga~~L~~~c~~LE~~~r~g~~ 96 (123)
T 3iqt_A 66 HKLHGSCGYSGVPRMKNLCQLIEQQLRSGTK 96 (123)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHcCCC
Confidence 37899999999975 4666789999987554
No 44
>3e8p_A Uncharacterized protein; X-RAY Q8E9M7 SOR246 NESG structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=20.19 E-value=1e+02 Score=22.68 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=31.9
Q ss_pred CchHHHHHHHHHHHhcCchhhhccCCcEEEEEEeCCEEEEEEc
Q psy1153 118 DDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQ 160 (195)
Q Consensus 118 ~~~~~~~~i~~~l~~~irP~l~~dGG~ie~v~~~~g~v~v~l~ 160 (195)
+.+++.+++++.+. .-.|+.+.-| +++..+++|.+.+++.
T Consensus 15 ~~~~~~~~i~~~~~-~~~pf~~~lG--i~~~~~~~g~~~~~~~ 54 (164)
T 3e8p_A 15 IQAEVLKRVAEVFD-QHVPFHNLLG--LDIKRYDIDGVEVAIN 54 (164)
T ss_dssp HHHHHHHHHHHHHH-HSCHHHHHHT--CEEEEESSSCEEEEEE
T ss_pred CHHHHHHHHHHHhh-cCCcHHHhcC--cEEEEEeCCEEEEEEE
Confidence 45788889999888 5578888776 7888898888877774
Done!