RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1153
(195 letters)
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: d.52.8.1
Length = 92
Score = 141 bits (357), Expect = 3e-44
Identities = 56/78 (71%), Positives = 68/78 (87%)
Query: 110 SSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSS 169
SS + E+DDE V MIKELLDTRIRPTVQEDGGD+ + F+ G+V+LK+QGSCTSCPSS
Sbjct: 2 SSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSS 61
Query: 170 VVTLKNGVQNMLQFYIPE 187
++TLK+G+QNMLQFYIPE
Sbjct: 62 IITLKSGIQNMLQFYIPE 79
Score = 59.6 bits (145), Expect = 2e-12
Identities = 23/31 (74%), Positives = 28/31 (90%)
Query: 1 MIKELLDTRIRPTVQEDGGDIQFISFQDGVL 31
MIKELLDTRIRPTVQEDGGD+ + F+DG++
Sbjct: 17 MIKELLDTRIRPTVQEDGGDVIYRGFEDGIV 47
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural
genomics, protein structur initiative, NESG, PSI; NMR
{Staphylococcus epidermidis} SCOP: d.52.8.1
Length = 88
Score = 121 bits (306), Expect = 2e-36
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 115 IHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLK 174
+ ++ + E+++ R+RP + DGGD + + G+VKL++ G+C +CPSS +TLK
Sbjct: 1 MPTENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLK 59
Query: 175 NGVQNMLQFYIPE 187
G++ L +P
Sbjct: 60 AGIERALHEEVPG 72
Score = 50.7 bits (122), Expect = 3e-09
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 1 MIKELLDTRIRPTVQEDGGDIQFISFQDGV 30
+ E+++ R+RP + DGGD + +DG+
Sbjct: 11 QVAEVIE-RLRPFLLRDGGDCTLVDVEDGI 39
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster
biosynthesis, metal transport; 1.35A {Arabidopsis
thaliana} PDB: 2jnv_A
Length = 154
Score = 115 bits (289), Expect = 4e-33
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 120 DETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQN 179
T + ++ +LD IRP + DGG++ G VV++K+QG+C SCPSS +T+K G++
Sbjct: 3 PLTEENVESVLD-EIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIER 61
Query: 180 MLQFYIPE 187
L IPE
Sbjct: 62 RLMEKIPE 69
Score = 70.2 bits (172), Expect = 7e-16
Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 116 HEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKN 175
+ + I+++L+ + G + + + +VK+++ G + V+T++
Sbjct: 80 ETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPA----AGVMTVRV 135
Query: 176 GVQNMLQFYIPE 187
V L+ IP
Sbjct: 136 AVTQKLREKIPS 147
Score = 49.8 bits (119), Expect = 4e-08
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 1 MIKELLDTRIRPTVQEDGGDIQFISFQDGV 30
++ +LD IRP + DGG++ V
Sbjct: 8 NVESVLD-EIRPYLMSDGGNVALHEIDGNV 36
Score = 27.8 bits (62), Expect = 1.7
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 1 MIKELLDTRIRPTVQEDGGDIQFISFQDGV 30
I+++L+ + G + + +D +
Sbjct: 89 NIEKVLEEIRPYLIGTADGSLDLVEIEDPI 118
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural
genomics, northeast structural genomics consortiu
PSI-biology; NMR {Homo sapiens}
Length = 107
Score = 88.7 bits (220), Expect = 2e-23
Identities = 48/73 (65%), Positives = 63/73 (86%)
Query: 34 PGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATI 93
+T+DFPT AA+ SPL + LFRIEGVKSVFFG D ITVTK+++++DW LLKP+I+ATI
Sbjct: 34 ETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPDIYATI 93
Query: 94 MDFFSSGLPVLTD 106
MDFF+SGLP++T+
Sbjct: 94 MDFFASGLPLVTE 106
>1pqx_A Conserved hypothetical protein; ZR18,structure,
autostructure,spins,autoassign, northeast structural
genomics consortium; NMR {Staphylococcus aureus subsp}
SCOP: d.267.1.1 PDB: 2ffm_A
Length = 91
Score = 81.7 bits (202), Expect = 7e-21
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 34 PGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATI 93
G T D T + ++EGVKS+F DFI+V K ++D +W+ + P++ A
Sbjct: 24 EGMTSDTYTKVDDSQPAFINDILKVEGVKSIFHVMDFISVDK-ENDANWETVLPKVEAVF 82
Query: 94 MDFFSSG 100
Sbjct: 83 ELEHHHH 89
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program
for RICE genome research, unknown function; NMR {Oryza
sativa} SCOP: d.52.8.1
Length = 74
Score = 76.2 bits (188), Expect = 5e-19
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 120 DETVQMIKELLDTRIRPTVQED-GGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQ 178
+ + ++++L+ IRP + GG +QF+ +G +VK+++ G T++ V
Sbjct: 3 ELNEENVEKVLN-EIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVV----RTVRIAVS 57
Query: 179 NMLQFYIPE 187
L+ IP
Sbjct: 58 KKLREKIPS 66
Score = 33.4 bits (77), Expect = 0.006
Identities = 8/31 (25%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 2 IKELLDTRIRPTVQED-GGDIQFISFQDGVL 31
++++L+ IRP + GG +QF+ + ++
Sbjct: 9 VEKVLN-EIRPYLAGTGGGGLQFLMIKGPIV 38
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown
function, PSI-2, protein struct initiative; NMR
{Staphylococcus epidermidis}
Length = 94
Score = 75.2 bits (185), Expect = 2e-18
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 34 PGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATI 93
+ Q LF IEGVKS+F+ DFI++ K +D+ +W L P+I T
Sbjct: 25 DNSFTTYTAAQEG-QPEFINRLFEIEGVKSIFYVLDFISIDK-EDNANWNELLPQIENTF 82
Query: 94 MD 95
Sbjct: 83 AK 84
>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast
structural consortium, NESG, PSI-biology; NMR
{Saccharomyces cerevisiae}
Length = 119
Score = 73.5 bits (180), Expect = 2e-17
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 23 FISFQDGVLEEPGQTIDF----PTGQAAYCSPLGKLLF-RIEGVKSVFFGHDFITVTKQD 77
F+S DG + + + S L + +F + GV+S+ G DF+T+ K D
Sbjct: 32 FLS-TDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINK-D 89
Query: 78 DDVDWKLLKPEIFATIMDFFSSGLPVLTD 106
V W +KPEI + + G V++
Sbjct: 90 RMVHWNSIKPEIIDLLTKQLAYGEDVISK 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 8e-05
Identities = 37/189 (19%), Positives = 60/189 (31%), Gaps = 52/189 (27%)
Query: 38 IDFPTGQAAYCSPLGKLL----------FRIEGV----KSVFFGHDFITVTKQDDDVD-- 81
+DF TG+ Y +L F + V KS+ + + D V
Sbjct: 7 MDFETGEHQYQY--KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 82 ----WKLL-KPEIFATIMDFFSSGL----PVLTDA------QPSSDTVIHEDDDE----T 122
W LL K E + F L L QPS T ++ + +
Sbjct: 65 LRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 123 VQMIKELLDTR------IRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNG 176
Q+ + +R +R + E + + G + GS + + V L
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVLIDG------VLGSGKTWVALDVCLSYK 175
Query: 177 VQNMLQFYI 185
VQ + F I
Sbjct: 176 VQCKMDFKI 184
Score = 27.5 bits (60), Expect = 3.2
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 24/83 (28%)
Query: 65 FFGHDFITVTKQDDDVDWKLLKPEIFATIMDF-F---------------SSGLPVLTDAQ 108
GH + + + + L +F +DF F S L L +
Sbjct: 476 HIGHHLKNI-EHPERMT---LFRMVF---LDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 109 PSSDTVIHEDDDETVQMIKELLD 131
I ++D + +++ +LD
Sbjct: 529 FYKP-YICDNDPKYERLVNAILD 550
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.8 bits (89), Expect = 3e-04
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 172 TLKNGVQNMLQFYIPETTPGL----NME 195
LK +Q L+ Y ++ P L ME
Sbjct: 21 ALKK-LQASLKLYADDSAPALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.15
Identities = 25/141 (17%), Positives = 39/141 (27%), Gaps = 49/141 (34%)
Query: 1 MIKELLDTRIRPTVQE--DGGDIQF-----ISFQDGVLEEPGQ-TIDFPTGQAAYCSPLG 52
M +L T Q+ + D F S D V+ P TI F G+ G
Sbjct: 1631 MGMDLYKTS--KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF-GGEK------G 1681
Query: 53 KLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFATIMDFFSSGLPVLTDAQPSSD 112
K RI ++ + F TI+D + + S
Sbjct: 1682 K---RIR--------ENYSAMI---------------FETIVDGKLKTEKIFKEINEHST 1715
Query: 113 TVIHEDDDETVQMIKELLDTR 133
+ + L T+
Sbjct: 1716 SYTFRSEKG------LLSATQ 1730
Score = 30.4 bits (68), Expect = 0.41
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 31/114 (27%)
Query: 89 IFATIM-DFFSSGLPVLTDA-----QPSSDT---------VIHEDDDETVQMIKELLDTR 133
A+ + + F+ LP T+ +P++ V + V ++L+
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC 87
Query: 134 IRPTVQE--DGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYI 185
+ +G DI + KL T + +++ YI
Sbjct: 88 LTEFENCYLEGNDIH--AL---AAKL---------LQENDTTLVKTKELIKNYI 127
Score = 28.1 bits (62), Expect = 2.5
Identities = 38/243 (15%), Positives = 74/243 (30%), Gaps = 81/243 (33%)
Query: 1 MIKELLDTRIRPTVQE---DGGDIQFISFQDGV-----LEEPGQT----------IDFP- 41
++ +L+ T+ E D + + F G+ LE P T I P
Sbjct: 183 LVGDLIK-FSAETLSELIRTTLDAEKV-FTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 42 ---TGQAAYC--------SPLGKLLFRIEGVKSVFFGHDFIT--VTKQDDDVDWKLLKPE 88
A Y +P G+L ++G +T + D W+
Sbjct: 241 IGVIQLAHYVVTAKLLGFTP-GELRSYLKGATGH--SQGLVTAVAIAETDS--WESFF-V 294
Query: 89 IFATIMDF-FSSGL------PVLT-DAQPSSDTVIHEDDDETVQM--IKELLDTRIRPTV 138
+ F G+ P + D++ + + + M I L +++ V
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-PMLSISNLTQEQVQDYV 353
Query: 139 QEDGGDIQFISFQGGVVKLKMQGSCTSCPSS---VVTLKNGVQNMLQFYI---PETTPGL 192
+ + P+ ++L NG +N + P++ GL
Sbjct: 354 NKT---------------------NSHLPAGKQVEISLVNGAKN---LVVSGPPQSLYGL 389
Query: 193 NME 195
N+
Sbjct: 390 NLT 392
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein,
flavoprotein, FAD, mitochondrion, plastid, chromophore,
chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana}
PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Length = 525
Score = 31.1 bits (71), Expect = 0.22
Identities = 2/38 (5%), Positives = 9/38 (23%), Gaps = 1/38 (2%)
Query: 7 DTRIRPTVQEDGGDIQFISFQDGVLEEPGQTIDFPTGQ 44
+ + ++ G + + + F
Sbjct: 153 ERLVNQGLKRVGNSTKLELIWGSTMYHKDD-LPFDVFD 189
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag,
phosphorylation, gene regulation, signaling protein;
HET: TPO FAD; 2.30A {Drosophila melanogaster}
Length = 538
Score = 28.4 bits (64), Expect = 1.8
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 7 DTRIRPTVQEDGGDIQFISFQDGVLEEPGQTIDFPTGQA 45
D IR +E I F+ L +P I+ G
Sbjct: 117 DESIRSLCRELN--IDFVEKVSHTLWDPQLVIETNGGIP 153
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 27.5 bits (62), Expect = 2.5
Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 26/97 (26%)
Query: 112 DTVIHEDDDETVQMIKELLDTR---------------------IRPTVQEDGGDIQFISF 150
+I+ + + V+ I + D + I+P G DI +++
Sbjct: 213 TDIINYKNGDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKP-----GSDIGNVNY 267
Query: 151 QGGVVKLKMQGSCTSCPSSVVTLKNGVQNMLQFYIPE 187
G + + S + G+ + +
Sbjct: 268 LGEGDNIDIPRSEWGVGMGHKHIHGGLCPGGRLRMER 304
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 27.6 bits (62), Expect = 2.7
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 151 QGGVVKLKMQGSCTSC 166
V ++K QG C S
Sbjct: 124 SNAVSEVKDQGQCGSS 139
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 27.2 bits (61), Expect = 3.0
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 115 IHEDDDETVQMIKELLDTRIRPTVQEDGGDI 145
+ ++ + + K I P + + GG I
Sbjct: 22 MERNETDVLNRQKLYRRELIDPAIAQAGGQI 52
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural
genomics, PSI-2, protein structure initiative; 2.60A
{Vibrio parahaemolyticus rimd 2210633}
Length = 396
Score = 27.6 bits (60), Expect = 3.2
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 17/140 (12%)
Query: 17 DGGDIQFISFQDGVLEEPGQTIDFPTGQA---AYCSPLGKLLFRIEGVKSVFFGHDFITV 73
DG + ++S+ G + + T + P L+ +G V G V
Sbjct: 248 DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDG-CDAPV 306
Query: 74 TKQDDDVDWKLLKPEIFATIMDFFSSGLPVLTDAQPSSDTVIHEDDDETVQMIKELLDTR 133
D D P ++ +++ + L S D + + T
Sbjct: 307 DVADADSYNIENDPFLY--VLNTKAKSAQKLCKHSTSWDVLDGDRQI-----------TH 353
Query: 134 IRPTVQEDGGDIQFISFQGG 153
P+ + + F S G
Sbjct: 354 PHPSFTPNDDGVLFTSDFEG 373
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin
enzyme, photoreactivating enzyme; HET: FAD; 1.80A
{Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB:
1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Length = 484
Score = 27.2 bits (61), Expect = 3.9
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 7 DTRIRPTVQEDGGDIQFISFQDGVLEEPGQ 36
D ++ ++ G I+ + D +L P Q
Sbjct: 110 DGQVAAALKTAG--IRAVQLWDQLLHSPDQ 137
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A
{Arabidopsis thaliana}
Length = 537
Score = 27.2 bits (61), Expect = 4.1
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 7 DTRIRPTVQEDGGDIQFISFQDGVLEEPGQTIDFPTGQAAY 47
D +++ G ++ S L P I G
Sbjct: 121 DVKVKDYASSTG--VEVFSPVSHTLFNPA-HIIEKNGGKPP 158
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein;
HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP:
a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Length = 509
Score = 26.8 bits (60), Expect = 4.7
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 7 DTRIRPTVQEDGGDIQFISFQDGVLEEPGQ 36
D R + + G I SF +L EP +
Sbjct: 119 DHRAKDVLTAQG--IAVRSFNADLLYEPWE 146
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase;
HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Length = 214
Score = 26.3 bits (59), Expect = 5.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 151 QGGVVKLKMQGSCTSC 166
+G V K+K QG C SC
Sbjct: 10 KGAVTKVKDQGMCGSC 25
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A
{Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Length = 489
Score = 26.8 bits (60), Expect = 5.7
Identities = 5/38 (13%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 7 DTRIRPTVQEDGGDIQFISFQDGVLEEPGQTIDFPTGQ 44
+ + + G I+ + L P + F
Sbjct: 118 ERNLVKQLTILG--IEAKGYWGSTLCHPE-DLPFSIQD 152
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH
2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP:
d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Length = 208
Score = 26.1 bits (58), Expect = 6.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 151 QGGVVKLKMQGSCTSC 166
+G V +K QGSC SC
Sbjct: 10 KGAVTPVKNQGSCGSC 25
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase,
peptidase_C1A, hydrolase, in form; 1.31A {Crocus
sativus}
Length = 222
Score = 26.4 bits (58), Expect = 6.7
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 151 QGGVVKLKMQGSCTSC 166
+G V +K QG+C C
Sbjct: 10 KGAVTSVKDQGACGMC 25
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET:
TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A*
2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Length = 543
Score = 26.5 bits (59), Expect = 7.2
Identities = 5/38 (13%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 7 DTRIRPTVQEDGGDIQFISFQDGVLEEPGQTIDFPTGQ 44
D ++ + +G ++ + + P I G+
Sbjct: 142 DAAVQKLAKAEG--VRVETHCSHTIYNPELVIAKNLGK 177
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein,
hydrola protease, secreted, thiol protease; HET: P6G;
1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A
3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Length = 222
Score = 25.9 bits (58), Expect = 7.3
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 151 QGGVVKLKMQGSCTSC 166
V ++MQG C S
Sbjct: 19 MRTVTPIRMQGGCGSA 34
>3dao_A Putative phosphatse; structural genomics, joint center for S
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Length = 283
Score = 26.0 bits (58), Expect = 7.5
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 13/54 (24%)
Query: 116 HEDDDETVQMIKELLD-------------TRIRPTVQEDGGDIQFISFQGGVVK 156
D E + +I L+D + + +I+ G VV+
Sbjct: 38 LLIDPEYMSVIDRLIDKGIIFVVCSGRQFSSEFKLFAPIKHKLLYITDGGTVVR 91
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol
protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi}
PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A*
1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A*
1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A*
...
Length = 215
Score = 25.9 bits (58), Expect = 8.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 151 QGGVVKLKMQGSCTSC 166
+G V +K QG C SC
Sbjct: 10 RGAVTAVKDQGQCGSC 25
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen,
cysteine protease, house DUST mite, dermatop
pteronyssinus; 1.61A {Dermatophagoides pteronyssinus}
SCOP: d.3.1.1
Length = 312
Score = 26.1 bits (58), Expect = 8.7
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 151 QGGVVKLKMQGSCTSC 166
V ++MQG C S
Sbjct: 99 MRTVTPIRMQGGCGSA 114
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD,
DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Length = 440
Score = 26.0 bits (58), Expect = 9.0
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 7 DTRIRPTVQEDGGDIQFISFQDGVLEEPGQT 37
D +IR +E+G I+F +++D +L
Sbjct: 107 DEKIRKVCEENG--IEFKAYEDYLLTPKSLF 135
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A
{Plasmodium falciparum} PDB: 3bpm_A*
Length = 243
Score = 25.6 bits (57), Expect = 9.6
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 151 QGGVVKLKMQGSCTSC 166
GGV +K Q C SC
Sbjct: 29 HGGVTPVKDQALCGSC 44
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A
{Pachyrhizus erosus} PDB: 2b1n_A*
Length = 246
Score = 25.6 bits (57), Expect = 9.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 151 QGGVVKLKMQGSCTSC 166
+G + K+K QG C S
Sbjct: 11 KGVITKVKFQGQCGSG 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.408
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,036,085
Number of extensions: 178320
Number of successful extensions: 573
Number of sequences better than 10.0: 1
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 58
Length of query: 195
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 106
Effective length of database: 4,216,824
Effective search space: 446983344
Effective search space used: 446983344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)