RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1153
         (195 letters)



>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 92

 Score =  108 bits (271), Expect = 8e-32
 Identities = 56/78 (71%), Positives = 68/78 (87%)

Query: 110 SSDTVIHEDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSS 169
           SS +   E+DDE V MIKELLDTRIRPTVQEDGGD+ +  F+ G+V+LK+QGSCTSCPSS
Sbjct: 2   SSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSS 61

Query: 170 VVTLKNGVQNMLQFYIPE 187
           ++TLK+G+QNMLQFYIPE
Sbjct: 62  IITLKSGIQNMLQFYIPE 79



 Score = 49.5 bits (118), Expect = 4e-09
 Identities = 23/31 (74%), Positives = 28/31 (90%)

Query: 1  MIKELLDTRIRPTVQEDGGDIQFISFQDGVL 31
          MIKELLDTRIRPTVQEDGGD+ +  F+DG++
Sbjct: 17 MIKELLDTRIRPTVQEDGGDVIYRGFEDGIV 47


>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630
           {Staphylococcus epidermidis [TaxId: 1282]}
          Length = 88

 Score = 93.7 bits (233), Expect = 5e-26
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 117 EDDDETVQMIKELLDTRIRPTVQEDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNG 176
            ++      + E+++ R+RP +  DGGD   +  + G+VKL++ G+C +CPSS +TLK G
Sbjct: 3   TENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAG 61

Query: 177 VQNMLQFYIPE 187
           ++  L   +P 
Sbjct: 62  IERALHEEVPG 72



 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 2  IKELLDTRIRPTVQEDGGDIQFISFQDGVL 31
          + E+++ R+RP +  DGGD   +  +DG++
Sbjct: 12 VAEVIE-RLRPFLLRDGGDCTLVDVEDGIV 40


>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice
           (Oryza sativa) [TaxId: 4530]}
          Length = 73

 Score = 71.7 bits (176), Expect = 9e-18
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 120 DETVQMIKELLDTRIRPTVQ-EDGGDIQFISFQGGVVKLKMQGSCTSCPSSVVTLKNGVQ 178
           +   + ++++L+  IRP +    GG +QF+  +G +VK+++ G          T++  V 
Sbjct: 2   ELNEENVEKVLN-EIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVR----TVRIAVS 56

Query: 179 NMLQFYIPETT 189
             L+  IP   
Sbjct: 57  KKLREKIPSIQ 67



 Score = 33.6 bits (77), Expect = 0.002
 Identities = 8/31 (25%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 2  IKELLDTRIRPTVQ-EDGGDIQFISFQDGVL 31
          ++++L+  IRP +    GG +QF+  +  ++
Sbjct: 8  VEKVLN-EIRPYLAGTGGGGLQFLMIKGPIV 37


>d2ffma1 d.267.1.1 (A:1-83) Hypothetical protein SAV1430
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 83

 Score = 62.5 bits (152), Expect = 5e-14
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 33 EPGQTIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLKPEIFAT 92
          E   +  +     +        + ++EGVKS+F   DFI+V K ++D +W+ + P++ A 
Sbjct: 24 EGMTSDTYTKVDDS-QPAFINDILKVEGVKSIFHVMDFISVDK-ENDANWETVLPKVEAV 81

Query: 93 I 93
           
Sbjct: 82 F 82


>d1rwja_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA)
          {Geobacter sulfurreducens, GSU1996 [TaxId: 35554]}
          Length = 81

 Score = 26.7 bits (59), Expect = 0.54
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 48 CSPLGKLLFRIEGVKSVFFGHDF 70
           +P   + F+++GV    F H+F
Sbjct: 3  MTPPKTVNFKMKGVADAAFSHEF 25


>d1wqlb1 d.17.4.4 (B:5-186) Small subunit of cumene dioxygenase
           CumA2 {Pseudomonas fluorescens [TaxId: 294]}
          Length = 182

 Score = 24.3 bits (52), Expect = 8.9
 Identities = 8/50 (16%), Positives = 17/50 (34%)

Query: 37  TIDFPTGQAAYCSPLGKLLFRIEGVKSVFFGHDFITVTKQDDDVDWKLLK 86
                 G     S       R+E +  ++ G     + +  D + +K+ K
Sbjct: 114 RETESAGTLEVSSAFLCYRNRLERMTDIYVGERRDILLRVSDGLGFKIAK 163


>g1q7l.1 c.56.5.4 (A:,B:) Aminoacylase-1, catalytic domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 280

 Score = 24.7 bits (53), Expect = 9.0
 Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 117 EDDDETVQMIKELLDTRIRPTVQEDGGDIQFISF 150
           E++  +V + ++ L  RI  TVQ        ++F
Sbjct: 1   EEEHPSVTLFRQYL--RI-RTVQPKPDYGAAVAF 31


>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare),
           peroxidase 1 [TaxId: 4513]}
          Length = 309

 Score = 24.7 bits (53), Expect = 9.9
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 2   IKELLDTRIRPTVQEDGGDIQFISFQDGVLEEPGQTIDFPTGQAAYCSP 50
           I++ L+   R  V     DI  ++ +D V+   G     P G+    S 
Sbjct: 91  IRDRLERECRGAV-VSCSDILALAARDSVVVSGGPDYRVPLGRRDSRSF 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0524    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 744,018
Number of extensions: 34154
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 11
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)