BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11532
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Query: 132 SKGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVIRPLWYE 191
S+ H I TRR++P + A ++ R L+ RY LLPY YTL H G V+RPL +E
Sbjct: 630 SRNHNTIGTRRQDPVSWDVAFVNISRTVLQTRYTLLPYLYTLMHKAHTEGVTVVRPLLHE 689
Query: 192 FPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFD 237
F D+ T+ +++Q+L+G + LV PV + A V+ YFPRA W+D
Sbjct: 690 FVSDQVTWDIDSQFLLGPAFLVSPVLERNARNVTAYFPRAR--WYD 733
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTGS-VTIAVSLSKI 59
+++Q+L+G + LV PV + A V+ YFPRA W+D T G T+ L I
Sbjct: 699 IDSQFLLGPAFLVSPVLERNARNVTAYFPRAR--WYDYYTGVDINARGEWKTLPAPLDHI 756
Query: 60 PTYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYD-YRKGNY 118
+ RGG I+P +E + L+ Q + +AL+ GTA G L+ DDGQS D Y KG Y
Sbjct: 757 NLHVRGGYILPWQEPALN-THLSRQKFMGFKIALDDEGTAGGWLFWDDGQSIDTYGKGLY 815
Query: 119 VAVQFKYENGVLSSK 133
F + S
Sbjct: 816 YLASFSASQNTMQSH 830
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 132 SKGHAHIDTRRREPWLYGDATTSL--VRDALRARYALLPYWYTLFHTQEISGAPVIRPLW 189
S+ H + ++P +G + L R L RY LLPY YTLF G V RPL
Sbjct: 597 SRNHNGQGYKDQDPASFGADSLLLNSSRHYLNIRYTLLPYLYTLFFRAHSRGDTVARPLL 656
Query: 190 YEFPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDT 240
+EF +D T+ + Q+L G +L+ PV D GA +V Y P D VW+D +T
Sbjct: 657 HEFYEDNSTWDVHQQFLWGPGLLITPVLDEGAEKVMAYVP--DAVWYDYET 705
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 10/116 (8%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQT----GSVTIAVSL 56
+ Q+L G +L+ PV D GA +V Y P D VW+D YE +Q V + +
Sbjct: 668 VHQQFLWGPGLLITPVLDEGAEKVMAYVP--DAVWYD---YETGSQVRWRKQKVEMELPG 722
Query: 57 SKIPTYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYD 112
KI + RGG I P ++ + + ++P+ LI+AL+ N A+G L+ DDG++ D
Sbjct: 723 DKIGLHLRGGYIFPTQQP-NTTTLASRKNPLGLIIALDENKEAKGELFWDDGETKD 777
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 132 SKGHAHIDTRRREPWLYGDATTSL--VRDALRARYALLPYWYTLFHTQEISGAPVIRPLW 189
S+ H + ++P +G + L R L RY LLPY YTLF G V RPL
Sbjct: 597 SRNHNGQGYKDQDPASFGADSLLLNSSRHYLNIRYTLLPYLYTLFFRAHSRGDTVARPLL 656
Query: 190 YEFPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDT 240
+EF +D T+ + Q+L G +L+ PV D GA +V Y P D VW+D +T
Sbjct: 657 HEFYEDNSTWDVHQQFLWGPGLLITPVLDEGAEKVMAYVP--DAVWYDYET 705
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 10/116 (8%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQT----GSVTIAVSL 56
+ Q+L G +L+ PV D GA +V Y P D VW+D YE +Q V + +
Sbjct: 668 VHQQFLWGPGLLITPVLDEGAEKVMAYVP--DAVWYD---YETGSQVRWRKQKVEMELPG 722
Query: 57 SKIPTYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYD 112
KI + RGG I P ++ + + ++P+ LI+AL+ N A+G L+ DDG++ D
Sbjct: 723 DKIGLHLRGGYIFPTQQP-NTTTLASRKNPLGLIIALDENKEAKGELFWDDGETKD 777
>pdb|3LPO|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|B Chain B, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|C Chain C, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|D Chain D, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPP|A Chain A, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|B Chain B, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|C Chain C, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|D Chain D, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
Length = 898
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 11/134 (8%)
Query: 2 ENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQ----TGSVTIAVSLS 57
+ ++L G ++L+ PV GA VS Y P D +W+D YE+ + V + +
Sbjct: 698 DTEFLWGPALLITPVLKQGADTVSAYIP--DAIWYD---YESGAKRPWRKQRVDMYLPAD 752
Query: 58 KIPTYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYD-YRKG 116
KI + RGG IIP++E ++ + ++P+ LIVAL N TA+G+ + DDG++ D + G
Sbjct: 753 KIGLHLRGGYIIPIQEP-DVTTTASRKNPLGLIVALGENNTAKGDFFWDDGETKDTIQNG 811
Query: 117 NYVAVQFKYENGVL 130
NY+ F N L
Sbjct: 812 NYILYTFSVSNNTL 825
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 132 SKGHAHIDTRRREPWLYGDATTSL--VRDALRARYALLPYWYTLFHTQEISGAPVIRPLW 189
S+ H ++P +G + + R L RY LLP+ YTLF+ + G V RP+
Sbjct: 626 SRNHNSDGYEHQDPAFFGQNSLLVKSSRQYLTIRYTLLPFLYTLFYKAHVFGETVARPVL 685
Query: 190 YEFPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDT 240
+EF +D ++ + ++L G ++L+ PV GA VS Y P D +W+D ++
Sbjct: 686 HEFYEDTNSWIEDTEFLWGPALLITPVLKQGADTVSAYIP--DAIWYDYES 734
>pdb|4B9Y|A Chain A, Crystal Structure Of Apo Agd31b, Alpha-transglucosylase In
Glycoside Hydrolase Family 31
pdb|4B9Z|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With Acarbose
pdb|4BA0|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With 5f-alpha-glcf
Length = 817
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 8/132 (6%)
Query: 107 DGQSYDYRKGNYVA-VQFKYENGVLSSKGHAHIDTRRREPWLYGDATTSLVRDALRARYA 165
DG++ D K Y+ +Q+ V G HI + EP + T +++R ++ RY
Sbjct: 515 DGETLD--KEMYIRWLQYGVFQPVYRPHGQDHIPS---EPVFQDEETKAILRPLVKLRYR 569
Query: 166 LLPYWYTLFHTQEISGAPVIRPLWYEFPQDKETFAMENQYLIGDSILVRPVTDPGATQVS 225
+LPY YT + ++G P++RPL++ ++ + Y GDS+LV P+T G VS
Sbjct: 570 MLPYIYTAAYQNTLTGMPLMRPLFFSDEKNPALIDNKTSYFWGDSLLVTPITQAGVESVS 629
Query: 226 VYFPRADEVWFD 237
+ P+ VWFD
Sbjct: 630 IPAPKG--VWFD 639
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 2 ENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFD--RDT-YEAFTQTGSVTIAVSLSK 58
+ Y GDS+LV P+T G VS+ P+ VWFD +DT Y+ T +T+ L
Sbjct: 606 KTSYFWGDSLLVTPITQAGVESVSIPAPKG--VWFDFWKDTRYQ--TDGAPLTLPTDLHT 661
Query: 59 IPTYQRGGTIIPLRERVR-----RASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYDY 113
IP + G +P V R+ SL + V L A+G ++ DDG+ +
Sbjct: 662 IPVLVKAGAFMPYVPAVSTTEDYRSDSLEIHYYADASVPL-----AQGEIFEDDGKDPNS 716
Query: 114 RKGN 117
K N
Sbjct: 717 IKRN 720
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 128 GVLSSKGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVIRP 187
G+LSS H R PW Y D + +VR + + ++PY Y G P++R
Sbjct: 531 GLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRA 590
Query: 188 LWYEFPQDKETFAMENQYLIGDSILVRPV-TDPGATQVSVYFPRADEVWFD 237
+ EFP D ++ QY++GD+++V PV T+ G Q + R +W +
Sbjct: 591 MMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHN 641
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 128 GVLSSKGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVIRP 187
G+LSS H R PW Y D + +VR + + ++PY Y G P++R
Sbjct: 531 GLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRA 590
Query: 188 LWYEFPQDKETFAMENQYLIGDSILVRPV-TDPGATQVSVYFPRADEVWFD 237
+ EFP D ++ QY++GD+++V PV T+ G Q + R +W +
Sbjct: 591 MMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHN 641
>pdb|2G3M|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3N|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
Length = 693
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 133 KGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVIRPLWYEF 192
+ H D EP D V++ + RY LPY Y+L G PVIRPL+YEF
Sbjct: 478 RSHKATDGIDTEPVFLPDYYKEKVKEIVELRYKFLPYIYSLALEASEKGHPVIRPLFYEF 537
Query: 193 PQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFD 237
D + + +E++Y++G +L P+ +++ V PR W++
Sbjct: 538 QDDDDMYRIEDEYMVGKYLLYAPIVSKEESRL-VTLPRGK--WYN 579
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTGSVTIAVSLSKIP 60
+E++Y++G +L P+ +++ V PR W++ Y ++ S ++P
Sbjct: 546 IEDEYMVGKYLLYAPIVSKEESRL-VTLPRGK--WYN---YWNGEIINGKSVVKSTHELP 599
Query: 61 TYQRGGTIIPLR 72
Y R G+IIPL
Sbjct: 600 IYLREGSIIPLE 611
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTGSVTIAVSLSKIP 60
+ QY+ G + LV PV + A VY P + W++ T E ++T L+++P
Sbjct: 807 INTQYMFGPAFLVNPVYEYKARSRDVYLPAGSD-WYNFYTGEKLAGGQTITADAPLARVP 865
Query: 61 TYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYDYRKGNYVA 120
+ + G I+P ++ L P+ + V NG+ ++Y DDG+S Y++G +
Sbjct: 866 LFVKAGAIVPTGPLIQHVDE-GLNSPLLITVYTGANGSF--DIYEDDGRSLKYQQGEWSR 922
Query: 121 VQFKYEN 127
+ Y++
Sbjct: 923 IPLSYDD 929
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 161 RARYALLPYWYTLFHTQEISGAPVIRPLWYEFPQDKETFAMENQYLIGDSILVRPVTDPG 220
+ RY L+PY YTL ++R L +FP D++ + + QY+ G + LV PV +
Sbjct: 767 KLRYYLMPYIYTLGGDTYHKDGTIMRGLVMDFPNDRKAWDINTQYMFGPAFLVNPVYEYK 826
Query: 221 ATQVSVYFPRADEVWFDRDTYEAFTQTGSVTIAVSLSKI 259
A VY P + W++ T E ++T L+++
Sbjct: 827 ARSRDVYLPAGSD-WYNFYTGEKLAGGQTITADAPLARV 864
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 133 KGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVIRPLWYEF 192
+ HA TR +E + + + R + ARY L+PY Y+ + ++ +PL + +
Sbjct: 479 RDHAAEGTREQECYQFENIED--FRSVINARYRLVPYLYSEYMKAALNDDMYFKPLGFVY 536
Query: 193 PQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWF-----DRDTYEAFTQT 247
P DK +E+Q ++G+ I++ PV + A VY P +E+ F D E +
Sbjct: 537 PDDKMAIRVEDQLMLGNEIMIAPVYEQNARGRYVYLP--EEMKFIKFMPDGSISEEVLEK 594
Query: 248 GSVTIAVSLSKI 259
G + V+L+++
Sbjct: 595 GVHYVDVALNEV 606
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWF-----DRDTYEAFTQTGSVTIAVS 55
+E+Q ++G+ I++ PV + A VY P +E+ F D E + G + V+
Sbjct: 545 VEDQLMLGNEIMIAPVYEQNARGRYVYLP--EEMKFIKFMPDGSISEEVLEKGVHYVDVA 602
Query: 56 LSKIPTYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYDY-R 114
L+++P + R G IP+ E + ++ + + G++ LY DDG DY +
Sbjct: 603 LNEVPLFIRSGKCIPVAEAAECVKDIDTEN----MQLIGYEGSSY-TLYEDDGIHKDYDK 657
Query: 115 KGNY 118
K NY
Sbjct: 658 KENY 661
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 133 KGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVIRPLWYEF 192
+ HA TR +E + + + R + ARY L+PY Y+ + ++ +PL + +
Sbjct: 479 RDHAAEGTREQECYQFENIED--FRSVINARYRLVPYLYSEYMKAALNDDMYFKPLGFVY 536
Query: 193 PQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWF-----DRDTYEAFTQT 247
P DK +E+Q ++G+ I++ PV + A VY P +E+ F D E +
Sbjct: 537 PDDKMAIRVEDQLMLGNEIMIAPVYEQNARGRYVYLP--EEMKFIKFMPDGSISEEVLEK 594
Query: 248 GSVTIAVSLSKI 259
G + V+L+++
Sbjct: 595 GVHYVDVALNEV 606
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWF-----DRDTYEAFTQTGSVTIAVS 55
+E+Q ++G+ I++ PV + A VY P +E+ F D E + G + V+
Sbjct: 545 VEDQLMLGNEIMIAPVYEQNARGRYVYLP--EEMKFIKFMPDGSISEEVLEKGVHYVDVA 602
Query: 56 LSKIPTYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYDY-R 114
L+++P + R G IP+ E + ++ + + G++ LY DDG DY +
Sbjct: 603 LNEVPLFIRSGKCIPVAEAAECVKDIDTEN----MQLIGYEGSSY-TLYEDDGIHKDYDK 657
Query: 115 KGNY 118
K NY
Sbjct: 658 KENY 661
>pdb|3NSX|A Chain A, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
pdb|3NSX|B Chain B, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
Length = 666
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 133 KGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVIRPLWYEF 192
+ HA TR +E + + + R + ARY L+PY Y+ + ++ +PL + +
Sbjct: 479 RDHAAEGTREQECYQFENIED--FRSVINARYRLVPYLYSEYMKAALNDDMYFKPLGFVY 536
Query: 193 PQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWF-----DRDTYEAFTQT 247
P DK +E+Q ++G+ I++ PV + A VY P +E+ F D E +
Sbjct: 537 PDDKMAIRVEDQLMLGNEIMIAPVYEQNARGRYVYLP--EEMKFIKFMPDGSISEEVLEK 594
Query: 248 GSVTIAVSLSKI 259
G + V+L+++
Sbjct: 595 GVHYVDVALNEV 606
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWF-----DRDTYEAFTQTGSVTIAVS 55
+E+Q ++G+ I++ PV + A VY P +E+ F D E + G + V+
Sbjct: 545 VEDQLMLGNEIMIAPVYEQNARGRYVYLP--EEMKFIKFMPDGSISEEVLEKGVHYVDVA 602
Query: 56 LSKIPTYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYDY-R 114
L+++P + R G IP+ E + ++ + + G++ LY DDG DY +
Sbjct: 603 LNEVPLFIRSGKCIPVAEAAECVKDIDTEN----MQLIGYEGSSY-TLYEDDGIHKDYDK 657
Query: 115 KGNY 118
K NY
Sbjct: 658 KENY 661
>pdb|3M6D|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M6D|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3MKK|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3MKK|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3POC|A Chain A, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3POC|B Chain B, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 666
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 133 KGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVIRPLWYEF 192
+ HA TR +E + + + R + ARY L+PY Y+ + ++ +PL + +
Sbjct: 479 RDHAAEGTREQECYQFENIED--FRSVINARYRLVPYLYSEYMKAALNDDMYFKPLGFVY 536
Query: 193 PQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWF-----DRDTYEAFTQT 247
P DK +E+Q ++G+ I++ PV + A VY P +E+ F D E +
Sbjct: 537 PDDKMAIRVEDQLMLGNEIMIAPVYEQNARGRYVYLP--EEMKFIKFMPDGSISEEVLEK 594
Query: 248 GSVTIAVSLSKI 259
G + V+L+++
Sbjct: 595 GVHYVDVALNEV 606
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWF-----DRDTYEAFTQTGSVTIAVS 55
+E+Q ++G+ I++ PV + A VY P +E+ F D E + G + V+
Sbjct: 545 VEDQLMLGNEIMIAPVYEQNARGRYVYLP--EEMKFIKFMPDGSISEEVLEKGVHYVDVA 602
Query: 56 LSKIPTYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYDY-R 114
L+++P + R G IP+ E + ++ + + G++ LY DDG DY +
Sbjct: 603 LNEVPLFIRSGKCIPVAEAAECVKDIDTEN----MQLIGYEGSSY-TLYEDDGIHKDYDK 657
Query: 115 KGNY 118
K NY
Sbjct: 658 KENY 661
>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 133 KGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVIRPLWYEF 192
+ HA TR +E + + + R + ARY L+PY Y+ + ++ +PL + +
Sbjct: 479 RDHAAEGTREQECYQFENIED--FRSVINARYRLVPYLYSEYMKAALNDDMYFKPLGFVY 536
Query: 193 PQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWF-----DRDTYEAFTQT 247
P DK +E+Q ++G+ I++ PV + A VY P +E+ F D E +
Sbjct: 537 PDDKMAIRVEDQLMLGNEIMIAPVYEQNARGRYVYLP--EEMKFIKFMPDGSISEEVLEK 594
Query: 248 GSVTIAVSLSKI 259
G + V+L+++
Sbjct: 595 GVHYVDVALNEV 606
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWF-----DRDTYEAFTQTGSVTIAVS 55
+E+Q ++G+ I++ PV + A VY P +E+ F D E + G + V+
Sbjct: 545 VEDQLMLGNEIMIAPVYEQNARGRYVYLP--EEMKFIKFMPDGSISEEVLEKGVHYVDVA 602
Query: 56 LSKIPTYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYDY-R 114
L+++P + R G IP+ E + ++ + + G++ LY DDG DY +
Sbjct: 603 LNEVPLFIRSGKCIPVAEAAECVKDIDTEN----MQLIGYEGSSY-TLYEDDGIHKDYDK 657
Query: 115 KGNY 118
K NY
Sbjct: 658 KENY 661
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Query: 128 GVLSSKGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVIRP 187
G+LSS H R PW Y D + +VR + + PY Y G P R
Sbjct: 531 GLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRXXPYLYREAARANARGTPXXRA 590
Query: 188 LWYEFPQDKETFAMENQYLIGDSILVRPV-TDPGATQVSVYFPRADEVWFD 237
EFP D ++ QY +GD++ V PV T+ G Q + R +W +
Sbjct: 591 XXXEFPDDPACDYLDRQYXLGDNVXVAPVFTEAGDVQFYLPEGRWTHLWHN 641
>pdb|3N04|A Chain A, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
pdb|3N04|B Chain B, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%)
Query: 128 GVLSSKGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVIRP 187
GV + H RE Y R + ARY L+PY Y+ + ++ +P
Sbjct: 472 GVFTPLXRDHAAEGTREQECYQFENIEDFRSVINARYRLVPYLYSEYXKAALNDDXYFKP 531
Query: 188 LWYEFPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFP 229
L + +P DK +E+Q +G+ I + PV + A VY P
Sbjct: 532 LGFVYPDDKXAIRVEDQLXLGNEIXIAPVYEQNARGRYVYLP 573
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADE-VWF--DRDTYEAFTQTGSVTIAVSLS 57
+E+Q +G+ I + PV + A VY P + + F D E + G + V+L+
Sbjct: 545 VEDQLXLGNEIXIAPVYEQNARGRYVYLPEEXKFIKFXPDGSISEEVLEKGVHYVDVALN 604
Query: 58 KIPTYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYDY-RKG 116
++P + R G IP+ E + ++ + G++ LY DDG DY +K
Sbjct: 605 EVPLFIRSGKCIPVAEAAECVKDIDTEN----XQLIGYEGSSY-TLYEDDGIHKDYDKKE 659
Query: 117 NY 118
NY
Sbjct: 660 NY 661
>pdb|2X2H|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2I|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2J|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
Length = 1027
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 8 GDSILVRPVTDPGATQVSVYFPRADEVW-----FDRDTYEAFTQTGS--VTIAVSLSKIP 60
G IL PV +T+ +Y P + + FD E G V S+ P
Sbjct: 803 GYRILCAPVVWENSTERELYLPVLTQWYKFGPDFDTKPLEGAMNGGDRIYNYPVPQSESP 862
Query: 61 TYQRGGTIIPLRERV----RRASSLTLQDPVTLIVALNVNGTARGNLYLDDG 108
+ R G I+P R + + ++ T +DP+ V N A G YLDDG
Sbjct: 863 IFVREGAILPTRYTLNGENKSLNTYTDEDPLVFEVFPLGNNRADGMCYLDDG 914
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,063,605
Number of Sequences: 62578
Number of extensions: 328150
Number of successful extensions: 876
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 41
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)