RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11532
(260 letters)
>gnl|CDD|216268 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31. Glycosyl
hydrolases are key enzymes of carbohydrate metabolism.
Family 31 comprises of enzymes that are, or similar to,
alpha- galactosidases.
Length = 436
Score = 161 bits (409), Expect = 7e-47
Identities = 59/141 (41%), Positives = 85/141 (60%), Gaps = 8/141 (5%)
Query: 125 YENGVLS--SKGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGA 182
+ G S + H+ DT+R+EPWL+G+ R ALR RY LLPY YTLF+ +G
Sbjct: 288 MQLGAFSPFFRNHSSNDTKRQEPWLFGEEVEEAARKALRLRYRLLPYLYTLFYEAHKTGL 347
Query: 183 PVIRPLWYEFPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYE 242
PV+RPL+ EFP+D+ T+ +++Q+L+GD +LV PV + GAT VY P + W+D T E
Sbjct: 348 PVMRPLFLEFPEDENTYDIDDQFLLGDDLLVAPVLEEGATSRDVYLP--EGTWYDFWTGE 405
Query: 243 AFTQTGS----VTIAVSLSKI 259
+ G VT+ L +I
Sbjct: 406 VYEGGGGGGQTVTVDAPLDRI 426
Score = 78.8 bits (195), Expect = 9e-17
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTGS----VTIAVSL 56
+++Q+L+GD +LV PV + GAT VY P + W+D T E + G VT+ L
Sbjct: 366 IDDQFLLGDDLLVAPVLEEGATSRDVYLP--EGTWYDFWTGEVYEGGGGGGQTVTVDAPL 423
Query: 57 SKIPTYQRGGTII 69
+IP + RGG+II
Sbjct: 424 DRIPVFVRGGSII 436
>gnl|CDD|224418 COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl
hydrolases [Carbohydrate transport and metabolism].
Length = 772
Score = 125 bits (317), Expect = 7e-33
Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 5/137 (3%)
Query: 125 YENGVLS--SKGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGA 182
Y+ G S + H + D REPW +G+ T +VR+ ++ RY LLPY YTL +G
Sbjct: 527 YQFGAFSPIFRLHGN-DNIPREPWAFGEETEEIVREYIQLRYRLLPYIYTLAAEASETGL 585
Query: 183 PVIRPLWYEFPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYE 242
P++RPL+ EFP+D+ T+ +++QY+ GD +LV PV + G T VY P W+D T E
Sbjct: 586 PMMRPLFLEFPEDETTYNLDDQYMFGDDLLVAPVVEEGQTSREVYLPEGT--WYDFWTGE 643
Query: 243 AFTQTGSVTIAVSLSKI 259
+ ++T+ L I
Sbjct: 644 EYEGGQTITVEAPLETI 660
Score = 92.8 bits (231), Expect = 2e-21
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTGSVTIAVSLSKIP 60
+++QY+ GD +LV PV + G T VY P W+D T E + ++T+ L IP
Sbjct: 604 LDDQYMFGDDLLVAPVVEEGQTSREVYLPEGT--WYDFWTGEEYEGGQTITVEAPLETIP 661
Query: 61 TYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYDYRKGNYVA 120
+ R G+IIPL E ++D + A G LY DDG+S+ Y KG Y
Sbjct: 662 VFVRAGSIIPLLENELYVGESYVEDVAFDVFPG--QDGASGELYDDDGESFAYEKGEYTD 719
Query: 121 VQFKYENGVLSSK 133
+ N +
Sbjct: 720 SKITVSNTKHGVE 732
>gnl|CDD|133133 cd06602, GH31_MGAM_SI_GAA, This family includes the following three
closely related glycosyl hydrolase family 31 (GH31)
enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase
(SI), and lysosomal acid alpha-glucosidase (GAA), also
known as acid-maltase. MGAM is one of the two enzymes
responsible for catalyzing the last glucose-releasing
step in starch digestion. SI is implicated in the
digestion of dietary starch and major disaccharides such
as sucrose and isomaltose, while GAA degrades glycogen
in the lysosome, cleaving both alpha-1,4 and alpha-1,6
glucosidic linkages. MGAM and SI are anchored to
small-intestinal brush-border epithelial cells. The
absence of SI from the brush border membrane or its
malfunction is associated with malabsorption disorders
such as congenital sucrase-isomaltase deficiency (CSID).
The domain architectures of MGAM and SI include two
tandem GH31 catalytic domains, an N-terminal domain
found near the membrane-bound end, and a C-terminal
luminal domain. Both of the tandem GH31 domains of MGAM
and SI are included in this family. The domain
architecture of GAA includes an N-terminal TFF (trefoil
factor family) domain in addition to the GH31 catalytic
domain. Deficient GAA expression causes pompe disease,
an autosomal recessive genetic disorder also known as
glycogen storage disease type II (GSDII).
Length = 339
Score = 93.4 bits (233), Expect = 3e-22
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 132 SKGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVIRPLWYE 191
S+ H I +EP+++G + R AL RY+LLPY YTLF+ SG V+RPL++E
Sbjct: 272 SRNHNDIGAIPQEPYVWGPSVADAARKALNIRYSLLPYLYTLFYEAHTSGTTVVRPLFFE 331
Query: 192 FPQDKETF 199
FP D T+
Sbjct: 332 FPSDPNTY 339
>gnl|CDD|133134 cd06603, GH31_GANC_GANAB_alpha, This family includes the closely
related glycosyl hydrolase family 31 (GH31) isozymes,
neutral alpha-glucosidase C (GANC) and the alpha subunit
of heterodimeric neutral alpha-glucosidase AB (GANAB).
Initially distinguished on the basis of differences in
electrophoretic mobility in starch gel, GANC and GANAB
have been shown to have other differences, including
those of substrate specificity. GANC and GANAB are key
enzymes in glycogen metabolism that hydrolyze terminal,
non-reducing 1,4-linked alpha-D-glucose residues from
glycogen in the endoplasmic reticulum. The GANC/GANAB
family includes the alpha-glucosidase II (ModA) from
Dictyostelium discoideum as well as the
alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2
lethality protein 2) from Saccharomyces cerevisiae.
Length = 339
Score = 88.8 bits (221), Expect = 2e-20
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 134 GHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFH 175
HAHIDT+RREPWL+G+ TS++R+A+R RYALLPYWYTLF+
Sbjct: 292 AHAHIDTKRREPWLFGEEYTSIIREAIRLRYALLPYWYTLFY 333
>gnl|CDD|236691 PRK10426, PRK10426, alpha-glucosidase; Provisional.
Length = 635
Score = 69.6 bits (171), Expect = 2e-13
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 16/119 (13%)
Query: 147 LYGDATTSLVRDALRARY-----ALLPYWYTLFHTQEISGAPVIRPLWYEFPQDKETFAM 201
DA T A AR L PY L +G PV+RPL+ + D T+ +
Sbjct: 503 FDSDAETI----AHFARMTRVFTTLKPYLKELVAEAAKTGLPVMRPLFLHYEDDAATYTL 558
Query: 202 ENQYLIGDSILVRPVTDPGATQVSVYFPRAD--EVWFDRDTYEAFTQTGSVTIAVSLSK 258
+ QYL+G +LV PV + G T +VY P +W T EAF G +T+ + K
Sbjct: 559 KYQYLLGRDLLVAPVHEEGRTDWTVYLPEDKWVHLW----TGEAFA-GGEITVEAPIGK 612
Score = 45.0 bits (107), Expect = 2e-05
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 4 QYLIGDSILVRPVTDPGATQVSVYFPRAD--EVWFDRDTYEAFTQTGSVTIAVSLSKIPT 61
QYL+G +LV PV + G T +VY P +W T EAF G +T+ + K P
Sbjct: 561 QYLLGRDLLVAPVHEEGRTDWTVYLPEDKWVHLW----TGEAFA-GGEITVEAPIGKPPV 615
Query: 62 YQRGGTI 68
+ R G+
Sbjct: 616 FYRAGSE 622
>gnl|CDD|236731 PRK10658, PRK10658, putative alpha-glucosidase; Provisional.
Length = 665
Score = 68.4 bits (168), Expect = 3e-13
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 121 VQFKYENGVLSSKGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEIS 180
F G+LSS H R PW Y + +VR + + L+PY Y
Sbjct: 527 CAF----GLLSSHSRLHGSKSYRVPWAYDEEAVDVVRFFTKLKCRLMPYLYREAAEAHER 582
Query: 181 GAPVIRPLWYEFPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFP 229
G P++R + EFP D ++ QY++GDS+LV PV V Y P
Sbjct: 583 GTPMMRAMVLEFPDDPACDYLDRQYMLGDSLLVAPVFSEAGD-VEYYLP 630
Score = 29.1 bits (66), Expect = 2.6
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 2 ENQYLIGDSILVRPVTDPGATQVSVYFP 29
+ QY++GDS+LV PV V Y P
Sbjct: 604 DRQYMLGDSLLVAPVFSEAGD-VEYYLP 630
>gnl|CDD|215408 PLN02763, PLN02763, hydrolase, hydrolyzing O-glycosyl compounds.
Length = 978
Score = 68.4 bits (167), Expect = 4e-13
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 132 SKGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVIRPLWYE 191
++GH+ T EPW +G+ + R AL+ RY LLP++YTLF+ +G PV+ P+++
Sbjct: 469 ARGHSEQGTIDHEPWSFGEECEEVCRLALKRRYRLLPHFYTLFYKAHTTGLPVMTPIFFA 528
Query: 192 FPQDKETFAMENQYLIGDS-ILVRPVTDPGATQVSVYFPRADEVW--FDRDTYEA----- 243
P+D +EN +L+G I + D G+ + P+ +W FD D
Sbjct: 529 DPKDPSLRKVENSFLLGPLLISASTLPDQGSDNLQHVLPKG--IWQRFDFDDSHPDLPLL 586
Query: 244 FTQTGSV 250
+ Q GS+
Sbjct: 587 YLQGGSI 593
Score = 63.8 bits (155), Expect = 1e-11
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 62 YQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYDYRKGNY 118
Y +GG+IIPL ++ +L D +TL++AL+ NG A G LY DDG + Y KG+Y
Sbjct: 587 YLQGGSIIPLGPPIQHVGEASLSDDLTLLIALDENGKAEGVLYEDDGDGFGYTKGDY 643
>gnl|CDD|133135 cd06604, GH31_glucosidase_II_MalA, Alpha-glucosidase II
(alpha-D-glucoside glucohydrolase) is a glycosyl
hydrolase family 31 (GH31) enzyme, found in bacteria and
plants, which has exo-alpha-1,4-glucosidase and
oligo-1,6-glucosidase activities. Alpha-glucosidase II
has been characterized in Bacillus
thermoamyloliquefaciens where it forms a homohexamer.
This family also includes the MalA alpha-glucosidase
from Sulfolobus sulfataricus and the AglA
alpha-glucosidase from Picrophilus torridus. MalA is
part of the carbohydrate-metabolizing machinery that
allows this organism to utilize carbohydrates, such as
maltose, as the sole carbon and energy source.
Length = 339
Score = 60.3 bits (147), Expect = 2e-10
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 134 GHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFH 175
H+ TR +EPW +G+ + R+A++ RY LLPY YTLF
Sbjct: 292 NHSAKGTRDQEPWAFGEEVEEIAREAIKLRYRLLPYLYTLFW 333
>gnl|CDD|133131 cd06600, GH31_MGAM-like, This family includes the following closely
related glycosyl hydrolase family 31 (GH31) enzymes:
maltase-glucoamylase (MGAM), sucrase-isomaltase (SI),
lysosomal acid alpha-glucosidase (GAA), neutral
alpha-glucosidase C (GANC), the alpha subunit of neutral
alpha-glucosidase AB (GANAB), and alpha-glucosidase II.
MGAM is one of the two enzymes responsible for
catalyzing the last glucose-releasing step in starch
digestion. SI is implicated in the digestion of dietary
starch and major disaccharides such as sucrose and
isomaltose, while GAA degrades glycogen in the lysosome,
cleaving both alpha-1,4 and alpha-1,6 glucosidic
linkages. MGAM and SI are anchored to small-intestinal
brush-border epithelial cells. The absence of SI from
the brush border membrane or its malfunction is
associated with malabsorption disorders such as
congenital sucrase-isomaltase deficiency (CSID). The
domain architectures of MGAM and SI include two tandem
GH31 catalytic domains, an N-terminal domain found near
the membrane-bound end and a C-terminal luminal domain.
Both of the tandem GH31 domains of MGAM and SI are
included in this family. The domain architecture of GAA
includes an N-terminal TFF (trefoil factor family)
domain in addition to the GH31 catalytic domain.
Deficient GAA expression causes pompe disease, an
autosomal recessive genetic disorder also known as
glycogen storage disease type II (GSDII). GANC and GANAB
are key enzymes in glycogen metabolism that hydrolyze
terminal, non-reducing 1,4-linked alpha-D-glucose
residues from glycogen in the endoplasmic reticulum.
Alpha-glucosidase II is a GH31 enzyme, found in bacteria
and plants, which has exo-alpha-1,4-glucosidase and
oligo-1,6-glucosidase activities. Alpha-glucosidase II
has been characterized in Bacillus
thermoamyloliquefaciens where it forms a homohexamer.
This family also includes the MalA alpha-glucosidase
from Sulfolobus sulfataricus and the AglA
alpha-glucosidase from Picrophilus torridus. MalA is
part of the carbohydrate-metabolizing machinery that
allows this organism to utilize carbohydrates, such as
maltose, as the sole carbon and energy source. The
MGAM-like family corresponds to subgroup 1 in the Ernst
et al classification of GH31 enzymes.
Length = 317
Score = 53.3 bits (128), Expect = 3e-08
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 132 SKGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLF 174
+ H D + EP + D VR+ + RY LLPY YTLF
Sbjct: 268 YRSHKATDGKDTEPVFFPDYYKEKVREIVELRYKLLPYLYTLF 310
>gnl|CDD|133124 cd06593, GH31_xylosidase_YicI, YicI alpha-xylosidase is a glycosyl
hydrolase family 31 (GH31) enzyme that catalyzes the
release of an alpha-xylosyl residue from the
non-reducing end of alpha-xyloside substrates such as
alpha-xylosyl fluoride and isoprimeverose. YicI forms a
homohexamer (a trimer of dimers). All GH31 enzymes
cleave a terminal carbohydrate moiety from a substrate
that varies considerably in size, depending on the
enzyme, and may be either a starch or a glycoprotein.
The YicI family corresponds to subgroup 4 in the Ernst
et al classification of GH31 enzymes.
Length = 308
Score = 36.1 bits (84), Expect = 0.014
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 121 VQFKYENGVLSSKGHAHIDTRRREPWLYGDATTSLVRDALRARYAL 166
QF G+LSS H + REPW YG+ +VR + +Y L
Sbjct: 268 AQF----GLLSSHSRLH-GSGYREPWEYGEEAVDVVRKFAKLKYRL 308
>gnl|CDD|133127 cd06596, GH31_CPE1046, CPE1046 is an uncharacterized Clostridium
perfringens protein with a glycosyl hydrolase family 31
(GH31) domain. The domain architecture of CPE1046 and
its orthologs includes a C-terminal fibronectin type 3
(FN3) domain and a coagulation factor 5/8 type C domain
in addition to the GH31 domain. Enzymes of the GH31
family possess a wide range of different hydrolytic
activities including alpha-glucosidase (glucoamylase and
sucrase-isomaltase), alpha-xylosidase,
6-alpha-glucosyltransferase,
3-alpha-isomaltosyltransferase and alpha-1,4-glucan
lyase. All GH31 enzymes cleave a terminal carbohydrate
moiety from a substrate that varies considerably in
size, depending on the enzyme, and may be either a
starch or a glycoprotein.
Length = 261
Score = 34.7 bits (80), Expect = 0.031
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 142 RREPWLYGDATTSLVRDALRARYALLPYWY 171
++PW++G+ TS+ RD L+ + L+PY Y
Sbjct: 232 DKQPWVFGEPYTSINRDYLKLKMRLMPYIY 261
>gnl|CDD|215373 PLN02691, PLN02691, porphobilinogen deaminase.
Length = 351
Score = 30.5 bits (69), Expect = 0.94
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 16/75 (21%)
Query: 8 GDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTGSVTIAV-SLSKIPTYQRGG 66
GD IL +P+ D G + F ++ +A G + IAV S+ +PTY G
Sbjct: 87 GDKILDQPLADIGGKGL-----------FTKEIDDALLS-GRIDIAVHSMKDVPTYLPEG 134
Query: 67 TIIPL---RERVRRA 78
TI+P RE VR A
Sbjct: 135 TILPCNLPREDVRDA 149
>gnl|CDD|131383 TIGR02330, prpD, 2-methylcitrate dehydratase. Members of this
family are bacterial proteins known or predicted to act
as 2-methylcitrate dehydratase, an enzyme involved in
the methylcitrate cycle of propionate catabolism. A
related clade of archaeal proteins that may or may not
be functionally equivalent is reserved for a future
model and is excluded from this family. The PrpD enzyme
of E. coli is responsible for the minor aconitase
activity (AcnC) not accounted for by AcnA and AcnB.
Length = 468
Score = 29.0 bits (65), Expect = 2.4
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 23/89 (25%)
Query: 126 ENGVLSSKGHAHIDTRRREPWLYGDATTSLVRDALRARYALL--------PYWY---TLF 174
+ L + HA +T R+ W GDAT+ VR AL+A + P W LF
Sbjct: 192 DGQSLRTYRHAP-NTGSRKSWAAGDATSRGVRLALKALTGEMGYPSALSAPVWGFYDVLF 250
Query: 175 HTQEISGAPVIRPLWYEFPQDKETFAMEN 203
Q FP+ ++ MEN
Sbjct: 251 KGQSFR-----------FPRPYGSYVMEN 268
>gnl|CDD|131378 TIGR02325, C_P_lyase_phnF, phosphonates metabolism transcriptional
regulator PhnF. All members of the seed alignment for
this family are predicted helix-turn-helix
transcriptional regulatory proteins of the broader gntR
and are found associated with genes for the import and
degradation of phosphonates and/or related compounds
(e.g. phosphonites) with a direct C-P bond [Transport
and binding proteins, Anions, Regulatory functions, DNA
interactions].
Length = 238
Score = 28.6 bits (64), Expect = 2.9
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 15/77 (19%)
Query: 35 WFDRDTY----EAFTQTGSVTIAVSLSKIPTYQRGGTIIPLRERVRRASSLTLQD----- 85
WF + +A+ +GS+T A+ + Y+R T I R A +
Sbjct: 146 WFPAARFPGIGQAYAASGSITDALREQGVADYRRSSTRI----SARHADAKDCARLELPP 201
Query: 86 --PVTLIVALNVNGTAR 100
P+ ++ ALN +G R
Sbjct: 202 GRPLLVVQALNHDGEGR 218
>gnl|CDD|184979 PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase;
Provisional.
Length = 245
Score = 28.4 bits (63), Expect = 3.2
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 137 HIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVI 185
H RR W++ + T S R R LLP+ FH +G P+I
Sbjct: 134 HFKKRRISIWMFPEGTRS------RGR-GLLPFKTGAFHAAIAAGVPII 175
>gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit;
Provisional.
Length = 843
Score = 28.2 bits (63), Expect = 5.5
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 65 GGTIIPLRERVRRASSLT----LQDPVTLIVALNVNGTARGNLY 104
GG IIP RV AS LT L +PV L V + A G +Y
Sbjct: 703 GGQIIPTARRVIYASQLTAKPRLLEPVYL-VEIQAPEQALGGIY 745
>gnl|CDD|200328 TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood
ATPase. Members of this protein family comprise a
distinct clade of putative ATPase associated with an
integral membrane complex likely to act in pilus
formation, secretion, or conjugal transfer. The
association of most members with a nearby gene for a
DEAH-box helicase suggests a role in conjugal transfer.
Length = 340
Score = 27.7 bits (62), Expect = 7.3
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 6 LIGDSILVRPVTDPGATQVSVYFPRADEVWFDR 38
L+G L + DPG T V V P DEVW DR
Sbjct: 49 LVGAGPLEPLLADPGVTDVLVNGP--DEVWVDR 79
Score = 27.7 bits (62), Expect = 7.3
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 206 LIGDSILVRPVTDPGATQVSVYFPRADEVWFDR 238
L+G L + DPG T V V P DEVW DR
Sbjct: 49 LVGAGPLEPLLADPGVTDVLVNGP--DEVWVDR 79
>gnl|CDD|224663 COG1749, FlgE, Flagellar hook protein FlgE [Cell motility and
secretion].
Length = 423
Score = 27.3 bits (61), Expect = 7.9
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 78 ASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYDYRKGNYVAVQFKYENGV 129
S +L VA +G A GNL + Y + + Y NGV
Sbjct: 283 TGSTQQSTGFSLTVASTQDGYAPGNL-----KDYRIDEDGVIVGV--YSNGV 327
>gnl|CDD|240407 PTZ00412, PTZ00412, leucyl aminopeptidase; Provisional.
Length = 569
Score = 27.2 bits (60), Expect = 9.0
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 45 TQTGSVTIAVSLSKIPTYQRGGTIIPLRERVRRASSLTLQDPVTLIVA-LNVNGTARGNL 103
T +VT A ++ + +GG R R Q P+ L++ N A GN+
Sbjct: 151 TAIFAVTAAYQYDRLKSGAKGGLTRARRAESRAKPPAAPQPPMELVIDSSNAQAIAAGNI 210
>gnl|CDD|191750 pfam07467, BLIP, Beta-lactamase inhibitor (BLIP). The structure of
BLIP reveals two structural domains, which form a polar,
concave surface that docks onto a predominantly polar,
convex protrusion on beta-lactamase. The ability of BLIP
to adapt to a variety of class A beta-lactamases is
thought to be due to flexibility between these two
domains.
Length = 156
Score = 26.8 bits (59), Expect = 9.5
Identities = 11/54 (20%), Positives = 17/54 (31%)
Query: 200 AMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTGSVTIA 253
E GDSI R + F A ++ R ++T+A
Sbjct: 30 NCETGGSFGDSIHCRGHAGDYYPYGTFGFTSAAKLDSKRQEKLLAASAPTLTLA 83
>gnl|CDD|235919 PRK07053, PRK07053, glutamine amidotransferase; Provisional.
Length = 234
Score = 26.8 bits (60), Expect = 9.8
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 12/40 (30%)
Query: 113 YRKGNYV-AVQFKYENGVLSSKGHAHIDTRRREPWLYGDA 151
+ GN+V A+QF H R E WL G A
Sbjct: 165 FAWGNHVLALQF-----------HPEAREDRFEAWLIGHA 193
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,469,040
Number of extensions: 1280086
Number of successful extensions: 1079
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1075
Number of HSP's successfully gapped: 37
Length of query: 260
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 165
Effective length of database: 6,723,972
Effective search space: 1109455380
Effective search space used: 1109455380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)