RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11532
(260 letters)
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase
inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB:
3ton_A*
Length = 908
Score = 173 bits (439), Expect = 2e-49
Identities = 47/127 (37%), Positives = 67/127 (52%), Gaps = 3/127 (2%)
Query: 134 GHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVIRPLWYEFP 193
H I TRR++P + A ++ R L+ RY LLPY YTL H G V+RPL +EF
Sbjct: 632 NHNTIGTRRQDPVSWDVAFVNISRTVLQTRYTLLPYLYTLMHKAHTEGVTVVRPLLHEFV 691
Query: 194 QDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTGS-VTI 252
D+ T+ +++Q+L+G + LV PV + A V+ YFP W+D T G T+
Sbjct: 692 SDQVTWDIDSQFLLGPAFLVSPVLERNARNVTAYFP--RARWYDYYTGVDINARGEWKTL 749
Query: 253 AVSLSKI 259
L I
Sbjct: 750 PAPLDHI 756
Score = 148 bits (374), Expect = 1e-40
Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTGS-VTIAVSLSKI 59
+++Q+L+G + LV PV + A V+ YFP W+D T G T+ L I
Sbjct: 699 IDSQFLLGPAFLVSPVLERNARNVTAYFP--RARWYDYYTGVDINARGEWKTLPAPLDHI 756
Query: 60 PTYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYD-YRKGNY 118
+ RGG I+P +E + L+ Q + +AL+ GTA G L+ DDGQS D Y KG Y
Sbjct: 757 NLHVRGGYILPWQEPALN-THLSRQKFMGFKIALDDEGTAGGWLFWDDGQSIDTYGKGLY 815
Query: 119 VAVQFKYENGVLSSK 133
F + S
Sbjct: 816 YLASFSASQNTMQSH 830
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family
31, multidomain protein, (beta/alpha)8 barrel, retaining
mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Length = 693
Score = 165 bits (419), Expect = 4e-47
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 8/137 (5%)
Query: 125 YENGVLS--SKGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGA 182
Y + + H D EP D V++ + RY LPY Y+L G
Sbjct: 468 YALALFFPFYRSHKATDGIDTEPVFLPDYYKEKVKEIVELRYKFLPYIYSLALEASEKGH 527
Query: 183 PVIRPLWYEFPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYE 242
PVIRPL+YEF D + + +E++Y++G +L P+ + V P W++ E
Sbjct: 528 PVIRPLFYEFQDDDDMYRIEDEYMVGKYLLYAPIVSKEES-RLVTLP--RGKWYNYWNGE 584
Query: 243 AFTQTGSVTIAVSLSKI 259
++ S ++
Sbjct: 585 IIN---GKSVVKSTHEL 598
Score = 111 bits (280), Expect = 4e-28
Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 24/147 (16%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTGSVTIAVSLSKIP 60
+E++Y++G +L P+ + V P W++ E ++ S ++P
Sbjct: 546 IEDEYMVGKYLLYAPIVSKEES-RLVTLP--RGKWYNYWNGEIIN---GKSVVKSTHELP 599
Query: 61 TYQRGGTIIPLRER---VRRASSLTLQDPVTLIVALN---------------VNGTARGN 102
Y R G+IIPL V +S D + + N +
Sbjct: 600 IYLREGSIIPLEGDELIVYGETSFKRYDNAEITSSSNEIKFSREIYVSKLTITSEKPVSK 659
Query: 103 LYLDDGQSYDYRKGNYVAVQFKYENGV 129
+ +DD + K K +
Sbjct: 660 IIVDDSKEIQVEKTMQNTYVAKINQKI 686
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31,
alpha-glucosidase membrane, disease mutation, disulfide
bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL;
2.15A {Homo sapiens} PDB: 3lpo_A*
Length = 898
Score = 166 bits (422), Expect = 5e-47
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 134 GHAHIDTRRREPWLYGDAT--TSLVRDALRARYALLPYWYTLFHTQEISGAPVIRPLWYE 191
H ++P +G + R L RY LLP+ YTLF+ + G V RP+ +E
Sbjct: 628 NHNSDGYEHQDPAFFGQNSLLVKSSRQYLTIRYTLLPFLYTLFYKAHVFGETVARPVLHE 687
Query: 192 FPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTG-SV 250
F +D ++ + ++L G ++L+ PV GA VS Y P D +W+D ++ V
Sbjct: 688 FYEDTNSWIEDTEFLWGPALLITPVLKQGADTVSAYIP--DAIWYDYESGAKRPWRKQRV 745
Query: 251 TIAVSLSKI 259
+ + KI
Sbjct: 746 DMYLPADKI 754
Score = 155 bits (392), Expect = 5e-43
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 5/135 (3%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTG-SVTIAVSLSKI 59
+ ++L G ++L+ PV GA VS Y P D +W+D ++ V + + KI
Sbjct: 697 EDTEFLWGPALLITPVLKQGADTVSAYIP--DAIWYDYESGAKRPWRKQRVDMYLPADKI 754
Query: 60 PTYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYD-YRKGNY 118
+ RGG IIP++E ++ + ++P+ LIVAL N TA+G+ + DDG++ D + GNY
Sbjct: 755 GLHLRGGYIIPIQEPDVT-TTASRKNPLGLIVALGENNTAKGDFFWDDGETKDTIQNGNY 813
Query: 119 VAVQFKYENGVLSSK 133
+ F N L
Sbjct: 814 ILYTFSVSNNTLDIV 828
>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31,
cell membrane, disulfide bond, glycoprotein,
glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A
{Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A*
3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*
Length = 875
Score = 166 bits (421), Expect = 5e-47
Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 7/140 (5%)
Query: 125 YENGVLS--SKGHAHIDTRRREPWLYGDATT--SLVRDALRARYALLPYWYTLFHTQEIS 180
+ G S+ H + ++P +G + + R L RY LLPY YTLF
Sbjct: 588 MQLGAFYPFSRNHNGQGYKDQDPASFGADSLLLNSSRHYLNIRYTLLPYLYTLFFRAHSR 647
Query: 181 GAPVIRPLWYEFPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDT 240
G V RPL +EF +D T+ + Q+L G +L+ PV D GA +V Y P D VW+D +T
Sbjct: 648 GDTVARPLLHEFYEDNSTWDVHQQFLWGPGLLITPVLDEGAEKVMAYVP--DAVWYDYET 705
Query: 241 YEAFTQTG-SVTIAVSLSKI 259
V + + KI
Sbjct: 706 GSQVRWRKQKVEMELPGDKI 725
Score = 143 bits (362), Expect = 4e-39
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTG-SVTIAVSLSKI 59
+ Q+L G +L+ PV D GA +V Y P D VW+D +T V + + KI
Sbjct: 668 VHQQFLWGPGLLITPVLDEGAEKVMAYVP--DAVWYDYETGSQVRWRKQKVEMELPGDKI 725
Query: 60 PTYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYD-YRKGNY 118
+ RGG I P ++ + + ++P+ LI+AL+ N A+G L+ DDG++ D Y
Sbjct: 726 GLHLRGGYIFPTQQ-PNTTTLASRKNPLGLIIALDENKEAKGELFWDDGETKDTVANKVY 784
Query: 119 VAVQFKYENGVLSSK 133
+ +F L
Sbjct: 785 LLCEFSVTQNRLEVN 799
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A
3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A*
3poc_A*
Length = 666
Score = 161 bits (410), Expect = 7e-46
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 7/140 (5%)
Query: 125 YENGVLS--SKGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGA 182
GV + + HA TR +E + + R + ARY L+PY Y+ + ++
Sbjct: 469 LALGVFTPLMRDHAAEGTREQECYQFE--NIEDFRSVINARYRLVPYLYSEYMKAALNDD 526
Query: 183 PVIRPLWYEFPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRA---DEVWFDRD 239
+PL + +P DK +E+Q ++G+ I++ PV + A VY P + D
Sbjct: 527 MYFKPLGFVYPDDKMAIRVEDQLMLGNEIMIAPVYEQNARGRYVYLPEEMKFIKFMPDGS 586
Query: 240 TYEAFTQTGSVTIAVSLSKI 259
E + G + V+L+++
Sbjct: 587 ISEEVLEKGVHYVDVALNEV 606
Score = 129 bits (325), Expect = 4e-34
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRA---DEVWFDRDTYEAFTQTGSVTIAVSLS 57
+E+Q ++G+ I++ PV + A VY P + D E + G + V+L+
Sbjct: 545 VEDQLMLGNEIMIAPVYEQNARGRYVYLPEEMKFIKFMPDGSISEEVLEKGVHYVDVALN 604
Query: 58 KIPTYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYDYRKGN 117
++P + R G IP+ E ++D T + L + LY DDG DY K
Sbjct: 605 EVPLFIRSGKCIPVAEAAE-----CVKDIDTENMQLIGYEGSSYTLYEDDGIHKDYDKKE 659
Query: 118 Y 118
Sbjct: 660 N 660
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase
family 31, (beta/alpha)8 barre; HET: PXN; 2.30A
{Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*
Length = 1020
Score = 156 bits (396), Expect = 1e-43
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Query: 125 YENGVLSSKGHAHIDTRRREPWLYGDATTS---LVRDALRARYALLPYWYTLFHTQEISG 181
Y+ G +H RE + D T + + RY L+PY YTL
Sbjct: 728 YQFGAFVPLYRSHGQNPYREIFNIADEGTEVYNAMVWYTKLRYYLMPYIYTLGGDTYHKD 787
Query: 182 APVIRPLWYEFPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTY 241
++R L +FP D++ + + QY+ G + LV PV + A VY P A W++ T
Sbjct: 788 GTIMRGLVMDFPNDRKAWDINTQYMFGPAFLVNPVYEYKARSRDVYLP-AGSDWYNFYTG 846
Query: 242 EAFTQTGSVTIAVSLSKI 259
E ++T L+++
Sbjct: 847 EKLAGGQTITADAPLARV 864
Score = 145 bits (367), Expect = 9e-40
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTGSVTIAVSLSKIP 60
+ QY+ G + LV PV + A VY P A W++ T E ++T L+++P
Sbjct: 807 INTQYMFGPAFLVNPVYEYKARSRDVYLP-AGSDWYNFYTGEKLAGGQTITADAPLARVP 865
Query: 61 TYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYDYRKGNYVA 120
+ + G I+P ++ P+ + V NG+ ++Y DDG+S Y++G +
Sbjct: 866 LFVKAGAIVPTGPLIQHVDEGL-NSPLLITVYTGANGS--FDIYEDDGRSLKYQQGEWSR 922
Query: 121 VQFKYENGVLSSK 133
+ Y++ +
Sbjct: 923 IPLSYDDVTGTLI 935
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase;
HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1
b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A*
1we5_A*
Length = 773
Score = 154 bits (391), Expect = 5e-43
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 3/135 (2%)
Query: 125 YENGVLSSKGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPV 184
G+LSS H R PW Y D + +VR + + ++PY Y G P+
Sbjct: 528 CAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPM 587
Query: 185 IRPLWYEFPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAF 244
+R + EFP D ++ QY++GD+++V PV V Y P + W +
Sbjct: 588 MRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGD-VQFYLP--EGRWTHLWHNDEL 644
Query: 245 TQTGSVTIAVSLSKI 259
+ +
Sbjct: 645 DGSRWHKQQHGFLSL 659
Score = 119 bits (301), Expect = 6e-31
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 3/118 (2%)
Query: 1 MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTGSVTIAVSLSKIP 60
++ QY++GD+++V PV V Y P + W + + +P
Sbjct: 604 LDRQYMLGDNVMVAPVFTEAGD-VQFYLP--EGRWTHLWHNDELDGSRWHKQQHGFLSLP 660
Query: 61 TYQRGGTIIPLRERVRRASSLTLQDPVTLIVALNVNGTARGNLYLDDGQSYDYRKGNY 118
Y R T++ L +R + + + L A + DG K
Sbjct: 661 VYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAAR 718
>2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway,
glycoside hydrolase family 3 starch binding domain;
2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A*
2x2j_A*
Length = 1027
Score = 139 bits (352), Expect = 1e-37
Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 14/134 (10%)
Query: 138 IDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISGAPVIRPLWYEFPQDKE 197
+E ++Y + + +R + RY YT + G P+I+
Sbjct: 730 HGKDYQELYMYPNEMDT-LRKFVEFRYRWQEVLYTAMYQNAAFGKPIIKAASMYNNDSNV 788
Query: 198 TFAMENQYLIGD----SILVRPVTDPGATQVSVYFPRADEVWFDRDTY--------EAFT 245
A + +L+G IL PV +T+ +Y P W+
Sbjct: 789 RRAQNDHFLLGGHDGYRILCAPVVWENSTERELYLP-VLTQWYKFGPDFDTKPLEGAMNG 847
Query: 246 QTGSVTIAVSLSKI 259
V S+
Sbjct: 848 GDRIYNYPVPQSES 861
Score = 132 bits (334), Expect = 3e-35
Identities = 32/151 (21%), Positives = 49/151 (32%), Gaps = 19/151 (12%)
Query: 1 MENQYLIGD----SILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTGS------- 49
+ +L+G IL PV +T+ +Y P W+
Sbjct: 792 QNDHFLLGGHDGYRILCAPVVWENSTERELYLP-VLTQWYKFGPDFDTKPLEGAMNGGDR 850
Query: 50 -VTIAVSLSKIPTYQRGGTIIPLRERVRRASSLT----LQDPVTLIVALNVNGTARGNLY 104
V S+ P + R G I+P R + + +DP+ V N A G Y
Sbjct: 851 IYNYPVPQSESPIFVREGAILPTRYTLNGENKSLNTYTDEDPLVFEVFPLGNNRADGMCY 910
Query: 105 LDDGQS--YDYRKGNYVAVQFKYENGVLSSK 133
LDDG G + V+ E +
Sbjct: 911 LDDGGVTTNAEDNGKFSVVKVAAEQDGGTET 941
>3eki_A High affinity transport system protein P37; TPP, cell membrane,
lipoprotein, membrane, transport protein, palmitate;
HET: TPP; 1.60A {Mycoplasma hyorhinis} PDB: 3e79_A*
3e78_A*
Length = 403
Score = 28.0 bits (61), Expect = 3.2
Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 2/130 (1%)
Query: 27 YFPRADEVWFDRDTYEAFTQTGSVTIAVSLSKIPTYQRGGTIIPLRERVRRASSLTLQDP 86
+ + + +T + + K Y G PL + + + + ++ P
Sbjct: 127 SGKLVEFLKNNPGIITPALETTTNSFVFDKEKDKFYVDGTDSDPLVKIAKEINKIFVETP 186
Query: 87 VT--LIVALNVNGTARGNLYLDDGQSYDYRKGNYVAVQFKYENGVLSSKGHAHIDTRRRE 144
NG ++Y Q+ YR ++ + + + +T R
Sbjct: 187 YASWTDENHKWNGNVYQSVYDPTVQANFYRGMIWIKGNDETLAKIKKAWNDKDWNTFRNF 246
Query: 145 PWLYGDATTS 154
L+G +S
Sbjct: 247 GILHGKDNSS 256
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 27.8 bits (62), Expect = 3.9
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%)
Query: 61 TYQRGGTIIPLRERVRRASSLTLQDPVTLIVALN--VNGTARGNL----YLDDGQSYDYR 114
QRG +I R+ S+ + + GT G + DG SY
Sbjct: 226 VQQRGAAVIKARKLSSAMSA-----AKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVP 280
Query: 115 KGNYVAVQFKYENG 128
+ ++
Sbjct: 281 DDLLYSFPVTIKDK 294
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,082,298
Number of extensions: 245070
Number of successful extensions: 574
Number of sequences better than 10.0: 1
Number of HSP's gapped: 545
Number of HSP's successfully gapped: 23
Length of query: 260
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 168
Effective length of database: 4,133,061
Effective search space: 694354248
Effective search space used: 694354248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)