RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11532
         (260 letters)



>d2f2ha3 b.71.1.4 (A:586-665) Putative glucosidase YicI, domain 3
           {Escherichia coli [TaxId: 562]}
          Length = 80

 Score = 80.2 bits (198), Expect = 3e-20
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 183 PVIRPLWYEFPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYE 242
           P++R +  EFP D     ++ QY++GD+++V PV       V  Y P     W      +
Sbjct: 1   PMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGD-VQFYLPEGR--WTHLWHND 57

Query: 243 AFTQTGSVTIAVSLSKI 259
               +           +
Sbjct: 58  ELDGSRWHKQQHGFLSL 74



 Score = 55.6 bits (134), Expect = 4e-11
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 1  MENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDTYEAFTQTGSVTIAVSLSKIP 60
          ++ QY++GD+++V PV       V  Y P     W      +    +           +P
Sbjct: 19 LDRQYMLGDNVMVAPVFTEAGD-VQFYLPEGR--WTHLWHNDELDGSRWHKQQHGFLSLP 75

Query: 61 TYQR 64
           Y R
Sbjct: 76 VYVR 79


>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2
           {Escherichia coli [TaxId: 562]}
          Length = 338

 Score = 63.3 bits (153), Expect = 3e-12
 Identities = 16/57 (28%), Positives = 23/57 (40%)

Query: 125 YENGVLSSKGHAHIDTRRREPWLYGDATTSLVRDALRARYALLPYWYTLFHTQEISG 181
              G+LSS    H     R PW Y D +  +VR   + +  ++PY Y         G
Sbjct: 281 CAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARG 337


>d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal
           catalytic domain {Streptomyces albus G [TaxId: 1962]}
          Length = 130

 Score = 25.3 bits (55), Expect = 4.8
 Identities = 4/19 (21%), Positives = 5/19 (26%)

Query: 128 GVLSSKGHAHIDTRRREPW 146
           G      H H+       W
Sbjct: 105 GYPGHNDHTHVAGGDGRFW 123


>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 156

 Score = 24.8 bits (53), Expect = 8.6
 Identities = 11/72 (15%), Positives = 17/72 (23%), Gaps = 7/72 (9%)

Query: 181 GAPVIRPLWYEFPQDKETFAMENQYLIGDSILVRPVTDPGATQVSVYFPRADEVWFDRDT 240
             P + PL + +      F   ++      I   P       +V                
Sbjct: 26  DQPYVIPLNFVWHNHAIYFHGASEGRKIKMIEANP-------EVCFTICEDLGTIVSPVP 78

Query: 241 YEAFTQTGSVTI 252
               T   SV I
Sbjct: 79  AHTDTAYMSVII 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 978,888
Number of extensions: 44420
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 6
Length of query: 260
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,268,006
Effective search space: 224437062
Effective search space used: 224437062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)