Query psy11533
Match_columns 92
No_of_seqs 106 out of 235
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 20:52:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nsx_A Alpha-glucosidase; stru 99.1 2.2E-10 7.5E-15 95.8 7.8 50 2-53 70-119 (666)
2 3lpp_A Sucrase-isomaltase; gly 99.0 4.6E-10 1.6E-14 97.1 7.7 48 2-51 225-274 (898)
3 2g3m_A Maltase, alpha-glucosid 99.0 1.2E-09 4.1E-14 91.5 7.4 51 2-53 81-131 (693)
4 3l4y_A Maltase-glucoamylase, i 98.9 4.7E-09 1.6E-13 90.6 7.8 48 2-51 197-246 (875)
5 4ba0_A Alpha-glucosidase, puta 98.8 5.3E-09 1.8E-13 89.4 7.0 48 2-53 171-218 (817)
6 3top_A Maltase-glucoamylase, i 98.5 1.3E-07 4.5E-12 82.2 7.4 47 2-51 200-247 (908)
7 2f2h_A Putative family 31 gluc 98.1 4E-06 1.4E-10 71.2 5.9 45 2-53 179-223 (773)
8 2x2h_A Alpha-1,4-glucan lyase 98.1 3.2E-06 1.1E-10 74.1 5.2 52 2-53 222-292 (1027)
9 2xvl_A Alpha-xylosidase, putat 94.0 0.042 1.4E-06 48.5 4.0 26 20-48 207-232 (1020)
10 3mlq_A DNA-directed RNA polyme 20.7 11 0.00037 27.2 -1.5 25 20-50 99-123 (188)
No 1
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A*
Probab=99.08 E-value=2.2e-10 Score=95.78 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=44.2
Q ss_pred eeEeecccCccccCCCCccccceeEEEeecCCCeEEEEEeccCCcEEEeccC
Q psy11533 2 YRLYNLDVFEYELDSPMSLYAAIPFVTAHNSHHSVGVFWLNAAETWVDVTRS 53 (92)
Q Consensus 2 YRlyN~Dvf~Y~~~s~~~lYGsIP~l~~~~~~~~~G~fw~N~aet~Vdi~~~ 53 (92)
|+|||.|+++|.. +.++|||+|||++++ .+.+.||||+|++++++|+...
T Consensus 70 ~~l~n~D~~~~~~-~~~~lY~~~Pf~~~~-~~~~~Gvf~~n~~~~~~d~~~~ 119 (666)
T 3nsx_A 70 YISNCTDDPIHTE-DKRSLYGAHNFIIVS-GKTTFGLFFDYPSKLTFDIGYT 119 (666)
T ss_dssp EEECCCCCSSCCT-TCCCCSEECCEEEEE-SSSCEEEEEECCSCEEEEESSS
T ss_pred EeeccCCCCCccc-cchhhhhcceEEEEE-cCcceeEEEecCCcEEEEeccc
Confidence 7999999999864 557999999999987 4678999999999999999754
No 2
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A*
Probab=99.02 E-value=4.6e-10 Score=97.06 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=43.4
Q ss_pred eeEeecccCccccCCCCccccceeEEEeecC--CCeEEEEEeccCCcEEEec
Q psy11533 2 YRLYNLDVFEYELDSPMSLYAAIPFVTAHNS--HHSVGVFWLNAAETWVDVT 51 (92)
Q Consensus 2 YRlyN~Dvf~Y~~~s~~~lYGsIP~l~~~~~--~~~~G~fw~N~aet~Vdi~ 51 (92)
|+|||.|++. ..+.++|||+|||++++++ +.+.||||.|++++.|++.
T Consensus 225 ~~l~n~D~~~--~~~~~~lY~~iPf~~~~~~~~~~~~Gvf~~Ns~~~~v~~~ 274 (898)
T 3lpp_A 225 WPIFTRDQLP--GDNNNNLYGHQTFFMCIEDTSGKSFGVFLMNSNAMEIFIQ 274 (898)
T ss_dssp EEESCCCCCC--CSSCCCCSCCEEEEEEECSTTCCEEEEEECCCSCEEEEEE
T ss_pred EEEEecCCCC--CCCCCCccccccEEEEEecCCCcEEEEEEeCCCCceEEcc
Confidence 8999999997 5667899999999999986 7799999999999988884
No 3
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Probab=98.95 E-value=1.2e-09 Score=91.50 Aligned_cols=51 Identities=27% Similarity=0.455 Sum_probs=46.9
Q ss_pred eeEeecccCccccCCCCccccceeEEEeecCCCeEEEEEeccCCcEEEeccC
Q psy11533 2 YRLYNLDVFEYELDSPMSLYAAIPFVTAHNSHHSVGVFWLNAAETWVDVTRS 53 (92)
Q Consensus 2 YRlyN~Dvf~Y~~~s~~~lYGsIP~l~~~~~~~~~G~fw~N~aet~Vdi~~~ 53 (92)
|+|||.|+++|..++ ++|||+|||++++..+...||||.|++.+++|+++.
T Consensus 81 ~~l~n~D~~~~~~~~-~~lY~~iPf~~~~~~~~~~Gvf~~n~~~~~~d~~~~ 131 (693)
T 2g3m_A 81 YVMYNVDAGAYKKYQ-DPLYVSIPLFISVKDGVATGYFFNSASKVIFDVGLE 131 (693)
T ss_dssp EEECCCCCCSCCTTC-CCCSEECCEEEEEETTEEEEEEECCCSCEEEEESSS
T ss_pred EEeEecCCCccCCCC-cccccceeEEEEEccCCEEEEEEeCCCceEEEEecc
Confidence 799999999999866 599999999999988889999999999999999754
No 4
>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*
Probab=98.86 E-value=4.7e-09 Score=90.55 Aligned_cols=48 Identities=25% Similarity=0.350 Sum_probs=42.5
Q ss_pred eeEeecccCccccCCCCccccceeEEEeecC--CCeEEEEEeccCCcEEEec
Q psy11533 2 YRLYNLDVFEYELDSPMSLYAAIPFVTAHNS--HHSVGVFWLNAAETWVDVT 51 (92)
Q Consensus 2 YRlyN~Dvf~Y~~~s~~~lYGsIP~l~~~~~--~~~~G~fw~N~aet~Vdi~ 51 (92)
|+|||.|.+. ....++|||+|||++++.+ +.+.||||.|++++.|++.
T Consensus 197 ~~~~n~D~~~--~~~~~~lY~~~Pf~~~~~~~~~~~~Gvf~~Ns~~~~v~~~ 246 (875)
T 3l4y_A 197 WPIFNRDTTP--NGNGTNLYGAQTFFLCLEDASGLSFGVFLMNSNAMEVVLQ 246 (875)
T ss_dssp EEECCCCCCC--STTCCCCSCCEEEEEEECSTTCCEEEEEECCCSCEEEEEE
T ss_pred EEEEecCCCC--CCCCCCcccceeEEEEEecCCCcEEEEEEECCCccEEEcc
Confidence 6899999988 4556799999999999975 6789999999999999985
No 5
>4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A*
Probab=98.83 E-value=5.3e-09 Score=89.36 Aligned_cols=48 Identities=21% Similarity=0.399 Sum_probs=43.4
Q ss_pred eeEeecccCccccCCCCccccceeEEEeecCCCeEEEEEeccCCcEEEeccC
Q psy11533 2 YRLYNLDVFEYELDSPMSLYAAIPFVTAHNSHHSVGVFWLNAAETWVDVTRS 53 (92)
Q Consensus 2 YRlyN~Dvf~Y~~~s~~~lYGsIP~l~~~~~~~~~G~fw~N~aet~Vdi~~~ 53 (92)
|+|||.|.|+|..+++ ++|++|||+++++ ..|+||.|++++++|+...
T Consensus 171 ~~l~n~d~~~~~~~~~-~~y~~iPf~~s~~---~yGvf~dn~~~~~~d~~~~ 218 (817)
T 4ba0_A 171 FPLYNRAHYGYSDHSG-QMYFGLPAIMSSK---QYILVFDNSASGAMDIGKT 218 (817)
T ss_dssp EEECCCCCTTCCSCBS-SCSCEEEEEEETT---SEEEEECCCSSEEEEESSS
T ss_pred EEEEecCCCCcCCCCc-cccccccEEEecC---cEEEEEECCCceEEEEEeC
Confidence 7899999999999987 6999999999854 5899999999999999754
No 6
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB: 3ton_A*
Probab=98.55 E-value=1.3e-07 Score=82.18 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=39.0
Q ss_pred eeEeecccCccccCCCCccccceeEEEeecC-CCeEEEEEeccCCcEEEec
Q psy11533 2 YRLYNLDVFEYELDSPMSLYAAIPFVTAHNS-HHSVGVFWLNAAETWVDVT 51 (92)
Q Consensus 2 YRlyN~Dvf~Y~~~s~~~lYGsIP~l~~~~~-~~~~G~fw~N~aet~Vdi~ 51 (92)
|+|||.|.+. ...++|||+|||++++.+ +.+.||||+|++++-|++.
T Consensus 200 ~~~~~~D~~~---~~~~nlYgs~Pfyl~~~~~~~~~Gvf~~Ns~~~dv~~~ 247 (908)
T 3top_A 200 WGMFSRDQPP---GYKKNSYGVHPYYMGLEEDGSAHGVLLLNSNAMDVTFQ 247 (908)
T ss_dssp EEESCCCCCS---CTTCCCSCCCCEEEEECSSSCEEEEEECCCSSEEEEEE
T ss_pred eeeeecCCCC---CCCCCccceeeeEEEEcCCCeEEEEEEEcCCCCeEEec
Confidence 6799999875 345799999999999864 5789999999999766663
No 7
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1 b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A* 1we5_A*
Probab=98.09 E-value=4e-06 Score=71.19 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=38.0
Q ss_pred eeEeecccCccccCCCCccccceeEEEeecCCCeEEEEEeccCCcEEEeccC
Q psy11533 2 YRLYNLDVFEYELDSPMSLYAAIPFVTAHNSHHSVGVFWLNAAETWVDVTRS 53 (92)
Q Consensus 2 YRlyN~Dvf~Y~~~s~~~lYGsIP~l~~~~~~~~~G~fw~N~aet~Vdi~~~ 53 (92)
|+|||.|.. .++++|||+|||++++ +..||||.|++.+.+|+...
T Consensus 179 ~~l~n~d~~----~~~~~lY~~iPf~~s~---~g~Gvf~~n~~~~~~d~~~~ 223 (773)
T 2f2h_A 179 VETWNRDGG----TSTEQAYKNIPFYMTN---RGYGVLVNHPQCVSFEVGSE 223 (773)
T ss_dssp EECCCCCCT----TSBSCCSEEEEEEEET---TSEEEEECCSSCCEEEESSS
T ss_pred EEEEecCCC----CCCccCcceEEEEEEC---CEEEEEEeCCCceEEEEeec
Confidence 789999963 2457899999999984 47999999999999999754
No 8
>2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway, glycoside hydrolase family 3 starch binding domain; 2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A* 2x2j_A*
Probab=98.08 E-value=3.2e-06 Score=74.06 Aligned_cols=52 Identities=25% Similarity=0.532 Sum_probs=43.7
Q ss_pred eeEeecccCcccc--------CC---C---CccccceeEEEeec-----CCCeEEEEEeccCCcEEEeccC
Q psy11533 2 YRLYNLDVFEYEL--------DS---P---MSLYAAIPFVTAHN-----SHHSVGVFWLNAAETWVDVTRS 53 (92)
Q Consensus 2 YRlyN~Dvf~Y~~--------~s---~---~~lYGsIP~l~~~~-----~~~~~G~fw~N~aet~Vdi~~~ 53 (92)
|++||.|.++|.. +| | .+||++|||++++. ++...|+||.|++.+++|++..
T Consensus 222 ~~~wN~D~~~y~~~~~~~~g~~s~~dp~~~~~lY~siPf~is~~~~g~~~~~~yGvf~dn~~~~~fD~g~~ 292 (1027)
T 2x2h_A 222 MTNYNYDNLNYNQWDLRPPHHDGALNPDYYIPMYYAAPWLIVNGCAGTSEQYSYGWFMDNVSQSYMNTGDT 292 (1027)
T ss_dssp EEECCCCCGGGCCGGGCCTTCCSCCCCCTTSCCSEECCEEEEEESTTSTTCEEEEEEECCCSSEEEESSCC
T ss_pred eeeeeccccccccccccccCCccccCcccccccccccceEEEeccccCCCCceEEEEEeCCCceEEEcccc
Confidence 6899999999875 33 2 48999999999965 3457899999999999999865
No 9
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase family 31, (beta/alpha)8 barre; HET: PXN; 2.30A {Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*
Probab=94.02 E-value=0.042 Score=48.50 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=23.9
Q ss_pred cccceeEEEeecCCCeEEEEEeccCCcEE
Q psy11533 20 LYAAIPFVTAHNSHHSVGVFWLNAAETWV 48 (92)
Q Consensus 20 lYGsIP~l~~~~~~~~~G~fw~N~aet~V 48 (92)
+|-+|||+++ .+.-|+||.|++-|.+
T Consensus 207 ~~~siPf~~s---~~~YGilwdn~~~~~f 232 (1020)
T 2xvl_A 207 LVISIPFLVS---SRNYGLLWDNNSITRF 232 (1020)
T ss_dssp TBEEEEEEEE---SSSEEEEECCCSCEEE
T ss_pred CCcceeEEEc---CCcEEEEEeCCCceEE
Confidence 9999999997 3578999999999999
No 10
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=20.74 E-value=11 Score=27.17 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=18.5
Q ss_pred cccceeEEEeecCCCeEEEEEeccCCcEEEe
Q psy11533 20 LYAAIPFVTAHNSHHSVGVFWLNAAETWVDV 50 (92)
Q Consensus 20 lYGsIP~l~~~~~~~~~G~fw~N~aet~Vdi 50 (92)
.-|.||+|+ ..|.|-.|-+|.-|=-
T Consensus 99 ~iG~iPlMt------~gGyFIING~ERVIVs 123 (188)
T 3mlq_A 99 FLGHLPLMT------EDGSFIINGADRVIVS 123 (188)
T ss_dssp EEEEEECCC------TTSCEEETTEEEECCC
T ss_pred EEcccCEEC------CCCEEEECCEEEEEEE
Confidence 347788887 4589999999876643
Done!