RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11533
(92 letters)
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family
31, multidomain protein, (beta/alpha)8 barrel, retaining
mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Length = 693
Score = 71.3 bits (175), Expect = 2e-16
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 2 YRLYNLDVFEYELDSPMSLYAAIPFVTAHNSHHSVGVFWLNAAETWVDVTRSKST 56
Y +YN+D Y+ LY +IP + + G F+ +A++ DV +
Sbjct: 81 YVMYNVDAGAYKKYQ-DPLYVSIPLFISVKDGVATGYFFNSASKVIFDVGLEEYD 134
>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31,
cell membrane, disulfide bond, glycoprotein,
glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A
{Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A*
3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*
Length = 875
Score = 57.9 bits (140), Expect = 1e-11
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 1 MYRLYNLDVFEYELDSPMSLYAAIPFVTAH--NSHHSVGVFWLNAAETWVDVTRSKST 56
+ ++N D + +LY A F S S GVF +N+ V + + +
Sbjct: 196 TWPIFNRDTTPNG--NGTNLYGAQTFFLCLEDASGLSFGVFLMNSNAMEVVLQPAPAI 251
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31,
alpha-glucosidase membrane, disease mutation, disulfide
bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL;
2.15A {Homo sapiens} PDB: 3lpo_A*
Length = 898
Score = 57.2 bits (138), Expect = 2e-11
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 1 MYRLYNLDVFEYELDSPMSLYAAIPFVTA--HNSHHSVGVFWLNAAETWVDVTRSKST 56
+ ++ D + ++ LY F S S GVF +N+ + + +
Sbjct: 224 TWPIFTRDQLPGDNNNN--LYGHQTFFMCIEDTSGKSFGVFLMNSNAMEIFIQPTPIV 279
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase
inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB:
3ton_A*
Length = 908
Score = 56.8 bits (137), Expect = 3e-11
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 2 YRLYNLDVFEYELDSPMSLYAAIPFVTAH-NSHHSVGVFWLNAAETWVDVTRSKST 56
+ + + + + Y P+ + GV LN+ V +
Sbjct: 197 WHTWGMFSRDQPPGYKKNSYGVHPYYMGLEEDGSAHGVLLLNSNAMDVTFQPLPAL 252
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A
3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A*
3poc_A*
Length = 666
Score = 53.9 bits (130), Expect = 3e-10
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 2 YRLYNLDVFEYELDSPMSLYAAIPFVTAHNSHHSVGVFWLNAAETWVDVTRSKST 56
Y D + + SLY A F+ + G+F+ ++ D+ ++
Sbjct: 70 YISNCTDDPIH-TEDKRSLYGAHNFIIVSGKT-TFGLFFDYPSKLTFDIGYTRMD 122
>2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway,
glycoside hydrolase family 3 starch binding domain;
2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A*
2x2j_A*
Length = 1027
Score = 52.4 bits (125), Expect = 1e-09
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 19/73 (26%)
Query: 2 YRLYNLDVFEYE--------------LDSPMSLYAAIPFVTAH-----NSHHSVGVFWLN 42
YN D Y D + +Y A P++ + + +S G F N
Sbjct: 222 MTNYNYDNLNYNQWDLRPPHHDGALNPDYYIPMYYAAPWLIVNGCAGTSEQYSYGWFMDN 281
Query: 43 AAETWVDVTRSKS 55
++++++ +
Sbjct: 282 VSQSYMNTGDTTW 294
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase;
HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1
b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A*
1we5_A*
Length = 773
Score = 48.6 bits (116), Expect = 2e-08
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 2 YRLYNLDVFEYELDSPMSLYAAIPFVTAHNSHHSVGVFWLNAAETWVDVTRSKST 56
+N D S Y IPF ++ GV + +V K +
Sbjct: 179 VETWNRDGGT----STEQAYKNIPFYM---TNRGYGVLVNHPQCVSFEVGSEKVS 226
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.17
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 11/34 (32%)
Query: 13 ELDSPMSLYAAIPFVTAHNSHHSVGVFWLNAA-E 45
+L + + LYA +S ++ + A E
Sbjct: 24 KLQASLKLYA--D-----DSAPALAI---KATME 47
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics,
riken structural genomics/proteomics in RSGI, rossmann
fold; 2.07A {Symbiobacterium toebii}
Length = 229
Score = 25.2 bits (56), Expect = 3.2
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 41 LNAAETWVDVTRSKSTLTGDVMSKIVNFVSGSG 73
+ ++ + ++ M +I +SGSG
Sbjct: 1 MGSSHHHHHHSSGENLYFQGHMIRIGVLISGSG 33
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 5.1
Identities = 4/9 (44%), Positives = 5/9 (55%)
Query: 37 GVFWLNAAE 45
+FWLN
Sbjct: 183 KIFWLNLKN 191
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 24.6 bits (54), Expect = 6.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 7 LDVFEYELDSPMSLYAAIPFVTAH 30
LDV+E E D ++L A+ T+H
Sbjct: 234 LDVWEGEPDLNVALLEAVDIGTSH 257
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 24.5 bits (54), Expect = 6.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 19 SLYAAIPFVTAHNSHHS 35
S +AI + H+S H+
Sbjct: 353 STESAIQHINTHSSRHT 369
>1rxq_A YFIT; nickel-binding, hydrolase, helix-bundle, structural genomics
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.70A {Bacillus
subtilis} SCOP: a.213.1.1
Length = 178
Score = 24.2 bits (52), Expect = 7.1
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 13 ELDSPMSLYAAIPFVTAHNSHH 34
+ ++L A+ H+ HH
Sbjct: 143 DTKEIITLENALGLYVWHSHHH 164
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 24.4 bits (53), Expect = 8.1
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 68 FVSGSGGDGGPRSSTE 83
F+ G+G GG +
Sbjct: 454 FIVGAGKFGGKKDPIA 469
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.389
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,397,783
Number of extensions: 66520
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 17
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)