RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11533
         (92 letters)



>d2f2ha2 b.30.5.11 (A:1-247) Putative glucosidase YicI, N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 247

 Score = 31.8 bits (72), Expect = 0.005
 Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 7/54 (12%)

Query: 2   YRLYNLDVFEYELDSPMSLYAAIPFVTAHNSHHSVGVFWLNAAETWVDVTRSKS 55
              +N D            Y  IPF   +  +   GV   +      +V   K 
Sbjct: 179 VETWNRDGGTST----EQAYKNIPFYMTNRGY---GVLVNHPQCVSFEVGSEKV 225


>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39,
          N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}
          Length = 114

 Score = 25.9 bits (57), Expect = 0.48
 Identities = 5/37 (13%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 17 PMSLYAAIPFVTAHNSH-HSVGVFWLNAAETWVDVTR 52
          P  L+  + ++ ++      +G+ W++  E  +    
Sbjct: 31 PRKLHMLLTYLASNPQLEEEIGLSWISDTEFKMKKKN 67


>d1s9ca2 d.38.1.4 (A:10-163) 2-enoyl-coa hydratase domain of
           multifunctional peroxisomal
           hydratase-dehydrogenase-epimerase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 154

 Score = 26.2 bits (57), Expect = 0.57
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 68  FVSGSGGDGGPRSSTEVR 85
           F+ GSGG GG R+S +V+
Sbjct: 136 FLVGSGGFGGKRTSDKVK 153


>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
          Pyrococcus furiosus [TaxId: 2261]}
          Length = 237

 Score = 24.7 bits (52), Expect = 1.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 62 MSKIVNFVSGSGGDG 76
          M +I++ VSG GG G
Sbjct: 1  MGRIISIVSGKGGTG 15


>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
           NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
          Length = 561

 Score = 23.3 bits (50), Expect = 6.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 10  FEYELDSPMSLYAAIPFVT 28
           +EYE+++  S     PFVT
Sbjct: 153 YEYEVNTLFSSNGQTPFVT 171


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0529    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 325,902
Number of extensions: 11617
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 6
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)