RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11534
(81 letters)
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family
31, multidomain protein, (beta/alpha)8 barrel, retaining
mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Length = 693
Score = 111 bits (279), Expect = 1e-30
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 1 MLQVMATFEGLLKRSNYQQRPFILTRSGFAGSQRFGAIWTGDNMAEWSHLKISLPMCLSL 60
+ + MATF+G FIL+R+G+AG QR+ IWTGDN W LK+ L + L L
Sbjct: 377 LYEAMATFKGFRTSHR--NEIFILSRAGYAGIQRYAFIWTGDNTPSWDDLKLQLQLVLGL 434
Query: 61 AVS 63
++S
Sbjct: 435 SIS 437
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31,
alpha-glucosidase membrane, disease mutation, disulfide
bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL;
2.15A {Homo sapiens} PDB: 3lpo_A*
Length = 898
Score = 111 bits (278), Expect = 2e-30
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 1 MLQVMATFEGLLKRSNYQQRPFILTRSGFAGSQRFGAIWTGDNMAEWSHLKISLPMCLSL 60
+AT + + K +R FILTRS FAGS R A W GDN A W ++ S+ L
Sbjct: 531 YSMAIATEQAVQKVFP-NKRSFILTRSTFAGSGRHAAHWLGDNTASWEQMEWSITGMLEF 589
Query: 61 AVS 63
++
Sbjct: 590 SLF 592
>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31,
cell membrane, disulfide bond, glycoprotein,
glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A
{Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A*
3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*
Length = 875
Score = 110 bits (277), Expect = 2e-30
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 1 MLQVMATFEGLLKRSNYQQRPFILTRSGFAGSQRFGAIWTGDNMAEWSHLKISLPMCLSL 60
+AT E +R FILTRS FAGS +F A W GDN A W L+ S+P L
Sbjct: 502 YSMAVATAEAAKTV-FPNKRSFILTRSTFAGSGKFAAHWLGDNTATWDDLRWSIPGVLEF 560
Query: 61 AVS 63
+
Sbjct: 561 NLF 563
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A
3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A*
3poc_A*
Length = 666
Score = 108 bits (271), Expect = 2e-29
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 1 MLQVMATFEGLLKRSNYQQRPFILTRSGFAGSQRFGAIWTGDNMAEWSHLKISLPMCLSL 60
A E +R + ++R + +RS + G R+G IW G N + WSH+ ++L M SL
Sbjct: 383 YNMTRAAGEAF-ERIDPEKRFLMFSRSSYIGMHRYGGIWMGANKSWWSHILLNLKMLPSL 441
Query: 61 AVS 63
+
Sbjct: 442 NMC 444
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase
inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB:
3ton_A*
Length = 908
Score = 108 bits (270), Expect = 2e-29
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 1 MLQVMATFEGLLKRSNYQQRPFILTRSGFAGSQRFGAIWTGDNMAEWSHLKISLPMCLSL 60
Q T+E + + + QR ++TRS F S R+ W GDN A W LK S+ +
Sbjct: 536 WSQTRPTYEAVQEVTG--QRGVVITRSTFPSSGRWAGHWLGDNTAAWDQLKKSIIGMMEF 593
Query: 61 AVS 63
++
Sbjct: 594 SLF 596
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase;
HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1
b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A*
1we5_A*
Length = 773
Score = 107 bits (269), Expect = 3e-29
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 1 MLQVMATFEGLLKRSNYQQRPFILTRSGFAGSQRFGAIWTGDNMAEWSHLKISLPMCLSL 60
+ + L K + ++ + RS G+Q+F W GD A + + SL LS+
Sbjct: 442 YIYNELVWNVL-KDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSI 500
Query: 61 AVS 63
+S
Sbjct: 501 GLS 503
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase
family 31, (beta/alpha)8 barre; HET: PXN; 2.30A
{Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*
Length = 1020
Score = 103 bits (259), Expect = 6e-28
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 1 MLQVMATFEGLLKRSNYQQRPFILTRSGFAGSQRFGA-IWTGDNMAEWSHLKISLPMCLS 59
+ ++G L + +R FILTRSGF G QR G+ IW+GD ++ WS +K + +
Sbjct: 618 VPHAEGVYQGELAT-DGDKRSFILTRSGFGGIQRTGSAIWSGDIVSRWSDMKDQIAAGIG 676
Query: 60 LAVS 63
++
Sbjct: 677 TNLA 680
>2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway,
glycoside hydrolase family 3 starch binding domain;
2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A*
2x2j_A*
Length = 1027
Score = 102 bits (254), Expect = 2e-27
Identities = 14/67 (20%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 1 MLQVMATFEGLLKRS----NYQQRPFILTRSGFAGSQRFGAIWTGDNMAEWSHLKISLPM 56
+T + + + +R +I++R G+ G+Q FG +W GDN +++++ +
Sbjct: 609 YTLCESTRKEGIVENADTLTKFRRSYIISRGGYIGNQHFGGMWVGDNSTTSNYIQMMIAN 668
Query: 57 CLSLAVS 63
+++ +S
Sbjct: 669 NINMNMS 675
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.12
Identities = 14/88 (15%), Positives = 22/88 (25%), Gaps = 41/88 (46%)
Query: 7 TFEG---LLKRSNYQQRPFILTRSGFAGSQRFGAIWTGDNMAEWSHLKISLPMCLSLAVS 63
TF LL + + Q P + A + LK S
Sbjct: 1718 TFRSEKGLLSATQFTQ-PALTLME----------------KAAFEDLK-----------S 1749
Query: 64 E--KKSANFVVG--IG------AAAGSM 81
+ + G +G + A M
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVM 1777
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 26.0 bits (56), Expect = 1.6
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 11 LLKRSNYQQRPFILTRSGFAGSQRFGAIWTGDNMAEWSHLK----ISLPMCLSLAVSEKK 66
L K + +R F+L + AG + + I L C ++
Sbjct: 16 LRKPKSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADS 75
Query: 67 SANFVVGI 74
+V +
Sbjct: 76 KNKHLVAL 83
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 24.1 bits (52), Expect = 6.8
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 20 RPFILTRSGF 29
RP TR+GF
Sbjct: 1168 RPATTTRNGF 1177
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.132 0.395
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,154,421
Number of extensions: 52033
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 11
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.7 bits)